Query 026130
Match_columns 243
No_of_seqs 120 out of 123
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 06:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wi9_A Protein C20ORF116 homol 100.0 2.5E-35 8.4E-40 220.9 4.1 69 130-198 3-71 (72)
2 3cuo_A Uncharacterized HTH-typ 97.3 0.001 3.5E-08 48.1 8.0 69 137-205 27-95 (99)
3 1ub9_A Hypothetical protein PH 97.2 0.0018 6E-08 46.7 8.4 68 138-205 20-90 (100)
4 2oqg_A Possible transcriptiona 96.7 0.008 2.7E-07 44.6 8.1 68 138-206 25-92 (114)
5 1tbx_A ORF F-93, hypothetical 96.7 0.0085 2.9E-07 43.8 8.1 67 138-204 12-82 (99)
6 1xn7_A Hypothetical protein YH 96.6 0.0038 1.3E-07 46.4 5.8 47 135-181 3-49 (78)
7 3jth_A Transcription activator 96.6 0.0086 2.9E-07 43.8 7.8 67 138-205 27-93 (98)
8 3tgn_A ADC operon repressor AD 96.5 0.005 1.7E-07 46.9 6.4 66 137-203 41-109 (146)
9 2k02_A Ferrous iron transport 96.5 0.0054 1.8E-07 46.7 6.3 47 136-182 4-50 (87)
10 2htj_A P fimbrial regulatory p 96.5 0.0048 1.6E-07 44.4 5.7 57 138-194 4-62 (81)
11 3f6o_A Probable transcriptiona 96.5 0.011 3.7E-07 45.2 7.9 69 138-207 22-90 (118)
12 1u2w_A CADC repressor, cadmium 96.5 0.012 4.1E-07 45.4 8.1 68 138-205 46-113 (122)
13 2cg4_A Regulatory protein ASNC 96.5 0.0097 3.3E-07 47.0 7.7 73 137-209 11-95 (152)
14 1r1u_A CZRA, repressor protein 96.4 0.013 4.4E-07 43.9 8.0 66 138-204 30-95 (106)
15 2pn6_A ST1022, 150AA long hypo 96.4 0.0092 3.1E-07 46.8 7.4 73 137-209 6-91 (150)
16 2kko_A Possible transcriptiona 96.3 0.012 4.1E-07 44.5 7.4 67 139-206 30-96 (108)
17 3oop_A LIN2960 protein; protei 96.3 0.022 7.4E-07 43.4 8.7 67 138-204 41-110 (143)
18 2dbb_A Putative HTH-type trans 96.3 0.015 5.3E-07 45.6 8.0 73 137-209 12-95 (151)
19 2hr3_A Probable transcriptiona 96.3 0.027 9.3E-07 42.8 9.0 66 138-203 39-108 (147)
20 1sfx_A Conserved hypothetical 96.3 0.016 5.5E-07 41.6 7.3 65 138-202 24-90 (109)
21 1lj9_A Transcriptional regulat 96.2 0.027 9.1E-07 42.7 8.8 65 138-202 33-100 (144)
22 2jt1_A PEFI protein; solution 96.2 0.0098 3.4E-07 44.1 6.0 50 134-183 4-59 (77)
23 3pqk_A Biofilm growth-associat 96.2 0.016 5.4E-07 42.8 7.1 67 138-205 27-93 (102)
24 2heo_A Z-DNA binding protein 1 96.1 0.011 3.6E-07 41.9 5.6 50 138-189 14-64 (67)
25 1on2_A Transcriptional regulat 96.1 0.041 1.4E-06 42.3 9.2 67 133-202 7-73 (142)
26 3s2w_A Transcriptional regulat 96.0 0.032 1.1E-06 43.4 8.6 67 138-204 54-123 (159)
27 2qvo_A Uncharacterized protein 96.0 0.054 1.8E-06 39.7 9.2 57 148-204 30-86 (95)
28 1i1g_A Transcriptional regulat 96.0 0.027 9.4E-07 43.4 7.9 74 137-210 7-91 (141)
29 3f6v_A Possible transcriptiona 96.0 0.032 1.1E-06 45.2 8.6 68 138-206 62-129 (151)
30 3bja_A Transcriptional regulat 96.0 0.024 8.2E-07 42.4 7.3 65 138-202 37-104 (139)
31 2p5v_A Transcriptional regulat 95.9 0.022 7.5E-07 45.5 7.4 73 137-209 13-98 (162)
32 3eco_A MEPR; mutlidrug efflux 95.9 0.047 1.6E-06 41.1 8.9 67 138-204 35-106 (139)
33 2nnn_A Probable transcriptiona 95.9 0.028 9.5E-07 42.1 7.5 65 138-202 42-109 (140)
34 2w25_A Probable transcriptiona 95.9 0.01 3.4E-07 46.8 5.1 73 137-209 10-94 (150)
35 3cjn_A Transcriptional regulat 95.9 0.047 1.6E-06 42.4 8.8 65 138-202 56-123 (162)
36 2eth_A Transcriptional regulat 95.9 0.045 1.5E-06 42.3 8.7 65 138-202 48-115 (154)
37 2rdp_A Putative transcriptiona 95.9 0.043 1.5E-06 41.8 8.4 66 138-203 46-114 (150)
38 3bj6_A Transcriptional regulat 95.8 0.053 1.8E-06 41.3 8.9 65 138-202 44-111 (152)
39 3bro_A Transcriptional regulat 95.8 0.038 1.3E-06 41.5 8.0 65 138-202 38-107 (141)
40 3k0l_A Repressor protein; heli 95.8 0.033 1.1E-06 43.6 7.8 67 138-204 50-119 (162)
41 2fbi_A Probable transcriptiona 95.8 0.029 1E-06 42.1 7.2 65 138-202 40-107 (142)
42 2a61_A Transcriptional regulat 95.8 0.029 1E-06 42.4 7.2 65 138-202 37-104 (145)
43 3bdd_A Regulatory protein MARR 95.8 0.039 1.3E-06 41.4 7.9 62 138-199 35-99 (142)
44 2bv6_A MGRA, HTH-type transcri 95.8 0.033 1.1E-06 42.2 7.4 65 138-202 41-108 (142)
45 3nrv_A Putative transcriptiona 95.8 0.039 1.3E-06 42.1 7.8 67 138-204 44-113 (148)
46 2gxg_A 146AA long hypothetical 95.7 0.062 2.1E-06 40.6 8.8 65 138-203 41-108 (146)
47 2h09_A Transcriptional regulat 95.7 0.078 2.7E-06 41.4 9.6 68 133-203 39-106 (155)
48 2e1c_A Putative HTH-type trans 95.7 0.027 9.1E-07 46.2 7.2 74 137-210 30-114 (171)
49 3g3z_A NMB1585, transcriptiona 95.7 0.046 1.6E-06 41.6 8.0 68 137-204 34-104 (145)
50 2cyy_A Putative HTH-type trans 95.7 0.031 1.1E-06 44.1 7.2 74 137-210 10-94 (151)
51 2frh_A SARA, staphylococcal ac 95.7 0.032 1.1E-06 42.6 7.1 67 138-204 41-112 (127)
52 2fbh_A Transcriptional regulat 95.6 0.049 1.7E-06 41.0 7.9 65 138-202 41-109 (146)
53 1jgs_A Multiple antibiotic res 95.6 0.072 2.4E-06 40.0 8.7 66 138-203 38-106 (138)
54 3i4p_A Transcriptional regulat 95.6 0.033 1.1E-06 44.8 7.2 74 137-210 6-93 (162)
55 1s3j_A YUSO protein; structura 95.6 0.061 2.1E-06 41.1 8.4 64 138-201 41-107 (155)
56 4hbl_A Transcriptional regulat 95.6 0.04 1.4E-06 42.5 7.4 70 137-206 44-116 (149)
57 2fa5_A Transcriptional regulat 95.6 0.043 1.5E-06 42.5 7.6 66 138-203 53-121 (162)
58 1ufm_A COP9 complex subunit 4; 95.6 0.03 1E-06 42.0 6.4 55 138-192 20-74 (84)
59 2cfx_A HTH-type transcriptiona 95.6 0.052 1.8E-06 42.5 8.1 73 137-209 8-91 (144)
60 3e6m_A MARR family transcripti 95.6 0.063 2.1E-06 41.9 8.5 67 138-204 57-126 (161)
61 3b73_A PHIH1 repressor-like pr 95.5 0.038 1.3E-06 43.4 7.2 60 137-199 16-77 (111)
62 3ech_A MEXR, multidrug resista 95.5 0.027 9.2E-07 42.9 6.2 67 138-204 41-110 (142)
63 3kp7_A Transcriptional regulat 95.5 0.027 9.2E-07 43.3 6.1 66 138-204 42-112 (151)
64 3hsr_A HTH-type transcriptiona 95.5 0.034 1.2E-06 42.5 6.6 67 137-203 39-108 (140)
65 3bpv_A Transcriptional regulat 95.4 0.06 2E-06 40.3 7.7 64 138-201 33-99 (138)
66 2pex_A Transcriptional regulat 95.4 0.041 1.4E-06 42.3 6.9 61 138-198 51-114 (153)
67 2nyx_A Probable transcriptiona 95.4 0.075 2.6E-06 42.0 8.5 65 138-202 49-116 (168)
68 3cdh_A Transcriptional regulat 95.4 0.064 2.2E-06 41.3 7.9 66 138-203 47-115 (155)
69 3f3x_A Transcriptional regulat 95.4 0.067 2.3E-06 40.6 7.9 66 138-204 41-109 (144)
70 4b4t_R RPN7, 26S proteasome re 95.4 0.034 1.2E-06 51.4 7.3 60 135-194 334-393 (429)
71 2qww_A Transcriptional regulat 95.3 0.078 2.7E-06 40.6 8.3 66 138-203 45-115 (154)
72 3jw4_A Transcriptional regulat 95.3 0.021 7.3E-07 43.8 5.0 67 138-204 45-116 (148)
73 1q1h_A TFE, transcription fact 95.3 0.034 1.2E-06 41.5 6.0 57 144-200 29-91 (110)
74 2pjp_A Selenocysteine-specific 95.3 0.062 2.1E-06 41.7 7.6 81 134-219 7-91 (121)
75 1z91_A Organic hydroperoxide r 95.3 0.039 1.3E-06 41.9 6.2 61 138-198 44-107 (147)
76 2jsc_A Transcriptional regulat 95.3 0.038 1.3E-06 42.3 6.2 64 138-202 25-88 (118)
77 2pg4_A Uncharacterized protein 95.2 0.085 2.9E-06 38.4 7.8 66 139-204 20-88 (95)
78 3txn_A 26S proteasome regulato 95.2 0.031 1.1E-06 52.3 6.6 59 136-194 304-362 (394)
79 3df8_A Possible HXLR family tr 95.2 0.068 2.3E-06 40.7 7.4 63 140-204 33-104 (111)
80 2lkp_A Transcriptional regulat 95.2 0.085 2.9E-06 39.6 7.8 65 139-204 37-101 (119)
81 1r1t_A Transcriptional repress 95.2 0.081 2.8E-06 41.0 7.9 64 140-204 52-115 (122)
82 2hzt_A Putative HTH-type trans 95.2 0.099 3.4E-06 39.2 8.1 55 139-194 19-77 (107)
83 3deu_A Transcriptional regulat 95.1 0.078 2.7E-06 42.1 7.9 67 138-204 57-127 (166)
84 3boq_A Transcriptional regulat 95.1 0.045 1.5E-06 42.2 6.1 66 138-203 51-120 (160)
85 2ia0_A Putative HTH-type trans 95.0 0.087 3E-06 43.0 8.1 74 137-210 20-111 (171)
86 3nqo_A MARR-family transcripti 94.9 0.12 4.1E-06 42.0 8.6 66 138-203 45-115 (189)
87 1qgp_A Protein (double strande 94.9 0.04 1.4E-06 40.2 5.1 53 137-189 17-72 (77)
88 3fm5_A Transcriptional regulat 94.9 0.083 2.8E-06 40.5 7.2 67 138-204 43-113 (150)
89 2xvc_A ESCRT-III, SSO0910; cel 94.8 0.05 1.7E-06 39.2 5.2 43 137-179 13-56 (59)
90 2d1h_A ST1889, 109AA long hypo 94.8 0.24 8.3E-06 35.4 9.0 64 141-204 29-98 (109)
91 2fxa_A Protease production reg 94.4 0.16 5.6E-06 42.2 8.5 72 138-209 52-126 (207)
92 2x4h_A Hypothetical protein SS 94.3 0.25 8.6E-06 37.6 8.7 64 135-202 18-81 (139)
93 2fsw_A PG_0823 protein; alpha- 94.3 0.23 8E-06 37.0 8.4 55 140-195 31-89 (107)
94 1qbj_A Protein (double-strande 94.2 0.12 4.2E-06 38.3 6.5 60 135-194 11-73 (81)
95 3u2r_A Regulatory protein MARR 94.2 0.12 4.3E-06 40.4 6.9 67 138-204 50-121 (168)
96 4b4t_Q 26S proteasome regulato 94.1 0.091 3.1E-06 45.0 6.3 73 137-209 345-422 (434)
97 1j5y_A Transcriptional regulat 94.0 0.21 7.3E-06 41.0 8.2 71 135-205 22-109 (187)
98 2zkz_A Transcriptional repress 93.8 0.15 5.2E-06 37.7 6.4 62 142-204 35-96 (99)
99 1yyv_A Putative transcriptiona 93.8 0.28 9.5E-06 38.6 8.1 54 141-195 42-99 (131)
100 2f2e_A PA1607; transcription f 93.7 0.37 1.3E-05 38.3 8.8 56 139-195 29-86 (146)
101 1lva_A Selenocysteine-specific 93.6 0.39 1.3E-05 41.7 9.6 84 132-219 139-227 (258)
102 1z7u_A Hypothetical protein EF 93.2 0.43 1.5E-05 35.9 8.1 56 140-196 28-87 (112)
103 4aik_A Transcriptional regulat 93.1 0.42 1.4E-05 37.6 8.3 65 138-202 35-103 (151)
104 1oyi_A Double-stranded RNA-bin 93.1 0.14 4.7E-06 38.7 5.1 50 131-181 14-63 (82)
105 4b8x_A SCO5413, possible MARR- 93.0 0.5 1.7E-05 36.8 8.5 63 140-202 41-108 (147)
106 2v79_A DNA replication protein 92.9 0.19 6.4E-06 40.3 6.0 60 146-206 49-113 (135)
107 1xmk_A Double-stranded RNA-spe 92.9 0.23 7.7E-06 37.0 6.0 58 134-193 11-70 (79)
108 2b0l_A GTP-sensing transcripti 92.7 0.23 7.9E-06 37.8 5.9 54 147-200 42-97 (102)
109 2fbk_A Transcriptional regulat 92.6 0.12 4.1E-06 41.3 4.4 66 138-203 73-144 (181)
110 3r0a_A Putative transcriptiona 92.4 0.38 1.3E-05 37.1 6.9 66 138-204 30-101 (123)
111 1y0u_A Arsenical resistance op 91.9 0.31 1.1E-05 35.5 5.5 51 138-194 35-85 (96)
112 3tqn_A Transcriptional regulat 91.8 1.1 3.7E-05 34.1 8.8 64 134-200 13-82 (113)
113 1ku9_A Hypothetical protein MJ 91.8 0.66 2.2E-05 34.6 7.4 47 146-192 39-88 (152)
114 3lmm_A Uncharacterized protein 91.5 0.25 8.7E-06 48.2 6.0 83 137-219 433-541 (583)
115 4b4t_P 26S proteasome regulato 91.2 0.3 1E-05 45.4 6.0 83 139-223 350-434 (445)
116 2dk8_A DNA-directed RNA polyme 91.0 0.85 2.9E-05 34.4 7.2 58 132-190 12-71 (81)
117 2wte_A CSA3; antiviral protein 91.0 0.54 1.8E-05 41.0 7.1 59 137-197 155-213 (244)
118 3hrs_A Metalloregulator SCAR; 91.0 0.68 2.3E-05 38.9 7.5 68 134-204 6-73 (214)
119 1bia_A BIRA bifunctional prote 90.3 0.54 1.9E-05 42.0 6.7 45 135-179 6-50 (321)
120 1p4x_A Staphylococcal accessor 90.3 1 3.4E-05 39.2 8.1 65 139-203 163-232 (250)
121 1uly_A Hypothetical protein PH 90.0 1.3 4.5E-05 37.0 8.4 67 138-205 24-106 (192)
122 3mn2_A Probable ARAC family tr 89.9 0.69 2.4E-05 34.0 5.9 76 134-219 2-80 (108)
123 2fu4_A Ferric uptake regulatio 89.8 0.7 2.4E-05 32.6 5.6 54 137-190 20-80 (83)
124 1okr_A MECI, methicillin resis 89.4 0.93 3.2E-05 33.6 6.3 60 138-197 14-78 (123)
125 3oou_A LIN2118 protein; protei 89.3 0.83 2.8E-05 33.7 5.9 76 133-219 4-81 (108)
126 2p5k_A Arginine repressor; DNA 89.3 1.2 4.2E-05 29.6 6.3 50 137-190 8-62 (64)
127 3u5c_Z RP45, S31, YS23, 40S ri 89.3 0.5 1.7E-05 37.6 4.9 60 133-192 44-103 (108)
128 2xzm_8 RPS25E,; ribosome, tran 88.8 0.49 1.7E-05 39.4 4.7 61 132-192 46-107 (143)
129 3iz6_V 40S ribosomal protein S 88.8 0.45 1.6E-05 37.8 4.3 60 133-192 45-104 (108)
130 3neu_A LIN1836 protein; struct 88.7 3.9 0.00013 31.5 9.7 57 133-190 16-78 (125)
131 1sfu_A 34L protein; protein/Z- 88.6 0.6 2E-05 34.9 4.6 52 131-182 12-63 (75)
132 4ev0_A Transcription regulator 88.5 0.42 1.4E-05 37.8 4.1 52 149-203 164-215 (216)
133 4a5n_A Uncharacterized HTH-typ 88.5 1.8 6.3E-05 34.4 7.8 60 146-205 37-106 (131)
134 4b4t_O 26S proteasome regulato 88.3 0.6 2.1E-05 42.8 5.5 74 145-229 304-378 (393)
135 3k2z_A LEXA repressor; winged 88.1 0.79 2.7E-05 37.7 5.6 47 135-181 10-57 (196)
136 3oio_A Transcriptional regulat 87.9 1.5 5.1E-05 32.5 6.6 77 132-219 5-83 (113)
137 2k9s_A Arabinose operon regula 87.9 1.8 6.1E-05 31.8 6.9 75 134-219 3-80 (107)
138 1b4a_A Arginine repressor; hel 87.4 1.2 4E-05 36.6 6.2 58 134-195 5-67 (149)
139 3iuo_A ATP-dependent DNA helic 87.3 1.1 3.7E-05 35.1 5.7 69 147-219 31-101 (122)
140 2g9w_A Conserved hypothetical 87.2 2.9 0.0001 32.2 8.1 60 137-196 12-78 (138)
141 1hsj_A Fusion protein consisti 87.1 1.5 5.1E-05 39.8 7.4 67 138-204 408-479 (487)
142 3tdu_C Cullin-1, CUL-1; E2:E3, 87.1 0.66 2.3E-05 34.3 4.1 55 138-192 15-77 (77)
143 4fx0_A Probable transcriptiona 86.3 1.2 4.1E-05 34.8 5.5 55 148-203 52-109 (148)
144 3lsg_A Two-component response 85.9 2.6 8.9E-05 30.6 6.9 75 134-219 2-79 (103)
145 1mkm_A ICLR transcriptional re 85.8 4.1 0.00014 34.5 9.0 86 138-226 12-103 (249)
146 1p6r_A Penicillinase repressor 85.8 1.9 6.5E-05 30.3 5.9 54 137-191 12-69 (82)
147 3by6_A Predicted transcription 85.8 3.1 0.00011 32.2 7.6 60 134-194 15-80 (126)
148 3cuq_B Vacuolar protein-sortin 85.8 0.95 3.2E-05 39.2 5.0 111 107-219 47-179 (218)
149 3o2p_E Cell division control p 85.4 1.3 4.5E-05 33.6 5.1 55 137-192 26-88 (88)
150 3mkl_A HTH-type transcriptiona 84.8 2 6.8E-05 32.3 5.9 76 132-219 5-82 (120)
151 2qq9_A Diphtheria toxin repres 84.8 4.5 0.00015 34.0 8.7 52 150-204 26-77 (226)
152 1pdn_C Protein (PRD paired); p 84.7 2.3 7.7E-05 30.9 6.0 83 133-218 20-103 (128)
153 2ba3_A NIKA; dimer, bacterial 84.7 1.1 3.6E-05 29.8 3.8 30 188-218 19-48 (51)
154 1bl0_A Protein (multiple antib 84.5 2.9 9.9E-05 31.8 6.8 77 131-218 8-86 (129)
155 2do7_A Cullin-4B, CUL-4B; heli 84.3 2.9 9.9E-05 32.5 6.7 56 137-192 34-95 (101)
156 3chm_A COP9 signalosome comple 84.0 2.3 7.8E-05 35.4 6.4 58 135-192 96-155 (169)
157 3dv8_A Transcriptional regulat 83.9 1.9 6.4E-05 34.1 5.6 51 148-201 169-219 (220)
158 1iuy_A Cullin-3 homologue; win 83.7 4 0.00014 31.0 7.1 57 136-192 28-92 (92)
159 2co5_A Viral protein F93; vira 83.2 4.7 0.00016 30.5 7.4 58 149-206 29-88 (99)
160 3cta_A Riboflavin kinase; stru 82.8 5.4 0.00018 33.3 8.3 54 149-202 28-81 (230)
161 1p4x_A Staphylococcal accessor 82.6 3.1 0.00011 36.0 7.0 65 138-202 38-107 (250)
162 1fx7_A Iron-dependent represso 82.1 4.9 0.00017 33.7 7.8 64 138-204 13-77 (230)
163 3l7w_A Putative uncharacterize 81.6 4.2 0.00014 30.4 6.6 54 152-205 30-87 (108)
164 2ek5_A Predicted transcription 81.5 6.6 0.00022 30.6 7.9 58 135-195 9-72 (129)
165 1ft9_A Carbon monoxide oxidati 81.1 1.9 6.5E-05 34.5 4.7 51 149-202 164-215 (222)
166 2vn2_A DNAD, chromosome replic 81.0 2.9 9.8E-05 32.5 5.6 55 148-203 51-110 (128)
167 2y75_A HTH-type transcriptiona 81.0 3.8 0.00013 31.1 6.2 57 139-195 14-74 (129)
168 1sd4_A Penicillinase repressor 80.9 5.6 0.00019 29.4 7.0 52 138-190 14-69 (126)
169 2qc0_A Uncharacterized protein 80.9 4.4 0.00015 37.0 7.6 62 137-199 300-361 (373)
170 3d0s_A Transcriptional regulat 80.4 2.7 9.3E-05 33.5 5.4 49 149-200 178-226 (227)
171 3fx3_A Cyclic nucleotide-bindi 80.3 1.7 5.9E-05 34.9 4.3 48 151-202 181-228 (237)
172 1k78_A Paired box protein PAX5 80.2 11 0.00037 28.9 8.6 81 133-218 35-118 (149)
173 3e6c_C CPRK, cyclic nucleotide 79.9 2.3 7.9E-05 34.8 5.0 52 148-202 177-228 (250)
174 2zcw_A TTHA1359, transcription 79.8 3 0.0001 32.8 5.4 50 149-201 147-196 (202)
175 2v7f_A RPS19, RPS19E SSU ribos 79.4 1.4 4.7E-05 36.2 3.4 62 142-205 62-138 (150)
176 3ic7_A Putative transcriptiona 79.4 3.7 0.00013 31.8 5.7 69 133-204 14-88 (126)
177 1xn7_A Hypothetical protein YH 78.9 1.6 5.3E-05 32.1 3.2 24 196-219 4-27 (78)
178 2vz4_A Tipal, HTH-type transcr 78.6 9.9 0.00034 28.5 7.8 65 150-219 3-69 (108)
179 2k9i_A Plasmid PRN1, complete 78.2 2.5 8.7E-05 27.6 3.8 29 189-218 14-42 (55)
180 1v4r_A Transcriptional repress 78.1 1.5 5E-05 32.3 2.9 40 150-190 37-76 (102)
181 2dk5_A DNA-directed RNA polyme 78.0 5.4 0.00019 29.8 6.1 55 137-191 23-82 (91)
182 2bgc_A PRFA; bacterial infecti 77.3 3.6 0.00012 33.4 5.3 51 149-203 170-222 (238)
183 3e97_A Transcriptional regulat 77.0 2.8 9.6E-05 33.5 4.5 50 149-201 176-225 (231)
184 3b02_A Transcriptional regulat 76.7 3.8 0.00013 32.1 5.2 49 149-200 140-188 (195)
185 2gqq_A Leucine-responsive regu 76.7 0.72 2.4E-05 36.8 0.9 74 135-208 14-101 (163)
186 3cuq_B Vacuolar protein-sortin 76.6 5.6 0.00019 34.3 6.6 55 135-191 155-211 (218)
187 1stz_A Heat-inducible transcri 76.4 4.3 0.00015 36.8 6.1 38 142-179 30-69 (338)
188 2gau_A Transcriptional regulat 75.6 5.2 0.00018 32.0 5.7 50 149-201 181-230 (232)
189 1cf7_A Protein (transcription 75.4 5.4 0.00018 29.3 5.3 56 134-191 14-72 (76)
190 3i71_A Ethanolamine utilizatio 74.7 2.7 9.1E-05 30.6 3.3 33 147-179 17-49 (68)
191 3ihu_A Transcriptional regulat 74.6 5.5 0.00019 32.8 5.8 55 146-202 38-93 (222)
192 2v9v_A Selenocysteine-specific 74.6 17 0.00057 27.4 8.2 79 139-218 7-97 (135)
193 2fmy_A COOA, carbon monoxide o 73.5 5.6 0.00019 31.6 5.4 49 148-200 167-217 (220)
194 2hs5_A Putative transcriptiona 73.1 5 0.00017 33.8 5.3 52 147-200 51-103 (239)
195 1q06_A Transcriptional regulat 72.9 15 0.00052 28.7 7.7 64 150-218 2-67 (135)
196 2rnn_A E3 SUMO-protein ligase 72.7 8.8 0.0003 30.6 6.3 65 134-207 28-96 (114)
197 2k02_A Ferrous iron transport 72.6 2 6.7E-05 32.4 2.4 24 196-219 4-27 (87)
198 2p4w_A Transcriptional regulat 72.5 7.2 0.00025 32.8 6.1 44 139-183 20-63 (202)
199 4a0z_A Transcription factor FA 72.4 4.9 0.00017 33.7 5.0 42 135-176 13-54 (190)
200 1bja_A Transcription regulator 72.0 16 0.00055 27.9 7.5 59 139-201 21-80 (95)
201 1d5y_A ROB transcription facto 71.9 7.3 0.00025 32.7 6.1 75 133-218 2-78 (292)
202 2lyc_A Spindle and kinetochore 71.9 0.83 2.8E-05 37.2 0.1 29 190-220 9-37 (130)
203 2vxz_A Pyrsv_GP04; viral prote 71.6 20 0.00069 30.3 8.5 70 134-204 11-81 (165)
204 4esf_A PADR-like transcription 71.4 31 0.0011 26.2 9.3 73 146-223 22-105 (117)
205 2esh_A Conserved hypothetical 71.3 19 0.00064 27.1 7.7 59 147-205 25-96 (118)
206 2qlz_A Transcription factor PF 71.1 3.1 0.00011 36.1 3.6 56 138-194 16-77 (232)
207 1u78_A TC3 transposase, transp 71.1 17 0.00058 26.9 7.4 76 137-219 13-88 (141)
208 3bwg_A Uncharacterized HTH-typ 70.7 9.1 0.00031 32.3 6.4 56 135-193 10-71 (239)
209 2wv0_A YVOA, HTH-type transcri 70.5 9.8 0.00033 32.3 6.6 55 134-189 14-74 (243)
210 2di3_A Bacterial regulatory pr 70.3 8.7 0.0003 32.0 6.1 55 136-190 10-73 (239)
211 1o57_A PUR operon repressor; p 69.1 22 0.00074 31.5 8.7 83 133-215 6-103 (291)
212 2jml_A DNA binding domain/tran 69.0 13 0.00045 26.3 6.1 66 148-218 5-74 (81)
213 1xma_A Predicted transcription 68.6 23 0.00078 28.1 8.0 72 147-223 53-137 (145)
214 1r7j_A Conserved hypothetical 68.3 30 0.001 25.5 8.1 59 135-199 9-67 (95)
215 3ri2_A Transcriptional regulat 68.0 15 0.00052 28.5 6.7 65 158-227 48-116 (123)
216 2vlg_A Sporulation kinase A; h 67.8 2.5 8.7E-05 31.2 2.1 23 172-194 5-27 (111)
217 2o0y_A Transcriptional regulat 66.7 17 0.00058 31.0 7.3 86 138-226 27-118 (260)
218 3rkx_A Biotin-[acetyl-COA-carb 66.6 15 0.0005 33.0 7.2 40 138-177 7-48 (323)
219 2hye_C Cullin-4A, CUL-4A; beta 66.5 7.7 0.00026 38.7 5.8 55 138-192 699-759 (759)
220 1hw1_A FADR, fatty acid metabo 66.2 10 0.00034 31.2 5.6 53 136-189 13-71 (239)
221 2zhg_A Redox-sensitive transcr 65.5 19 0.00065 28.9 7.0 68 146-219 9-78 (154)
222 1yg2_A Gene activator APHA; vi 65.5 28 0.00096 27.9 8.1 63 147-209 14-89 (179)
223 4ham_A LMO2241 protein; struct 65.1 8.6 0.00029 29.6 4.7 54 135-189 19-78 (134)
224 3dpl_C Cullin-5; ubiquitin, NE 64.3 5.1 0.00017 36.8 3.8 54 139-192 321-382 (382)
225 3f8b_A Transcriptional regulat 64.1 44 0.0015 25.2 9.4 49 158-206 43-96 (116)
226 2xrn_A HTH-type transcriptiona 64.1 18 0.00061 30.5 6.9 87 138-227 10-101 (241)
227 2cpg_A REPA protein, transcrip 64.0 8.1 0.00028 24.2 3.7 29 189-218 7-35 (45)
228 3f8m_A GNTR-family protein tra 63.7 7.6 0.00026 33.2 4.5 41 147-189 35-75 (248)
229 3t5x_A PCI domain-containing p 63.5 12 0.0004 31.4 5.6 48 146-193 139-192 (203)
230 1r8d_A Transcription activator 63.4 23 0.00079 26.4 6.7 65 149-218 3-69 (109)
231 4f3l_A Mclock, circadian locom 63.4 5.9 0.0002 35.3 3.9 81 105-194 27-114 (361)
232 3gbg_A TCP pilus virulence reg 62.0 12 0.00041 31.1 5.4 76 132-219 167-244 (276)
233 3c7j_A Transcriptional regulat 61.8 17 0.00058 30.6 6.3 42 146-189 48-89 (237)
234 3eqx_A FIC domain containing t 61.4 24 0.00084 32.3 7.8 62 137-199 300-361 (373)
235 1z6r_A MLC protein; transcript 61.0 11 0.00039 33.7 5.3 44 137-180 19-62 (406)
236 1z05_A Transcriptional regulat 60.9 12 0.00043 33.9 5.7 44 137-180 42-85 (429)
237 3elk_A Putative transcriptiona 60.1 19 0.00067 27.5 5.9 71 147-222 26-107 (117)
238 2k27_A Paired box protein PAX- 59.7 15 0.00052 28.5 5.3 81 133-219 28-112 (159)
239 3la7_A Global nitrogen regulat 59.6 9.4 0.00032 31.1 4.2 46 149-197 194-239 (243)
240 1ldj_A Cullin homolog 1, CUL-1 59.5 15 0.0005 36.8 6.3 55 138-192 698-760 (760)
241 3to7_A Histone acetyltransfera 58.5 22 0.00075 32.3 6.7 59 146-211 206-265 (276)
242 3sxy_A Transcriptional regulat 58.4 14 0.00049 30.2 5.2 52 146-199 34-86 (218)
243 3edp_A LIN2111 protein; APC883 57.9 21 0.00072 30.1 6.3 57 134-193 13-75 (236)
244 3t8r_A Staphylococcus aureus C 57.5 18 0.00063 28.4 5.5 44 147-190 27-70 (143)
245 2w48_A Sorbitol operon regulat 57.3 20 0.00069 31.3 6.2 44 136-179 9-52 (315)
246 4esb_A Transcriptional regulat 56.7 56 0.0019 24.7 8.0 74 147-225 21-105 (115)
247 2k4b_A Transcriptional regulat 56.2 31 0.0011 25.8 6.3 53 138-191 39-95 (99)
248 1w7p_D VPS36P, YLR417W; ESCRT- 56.2 17 0.00059 35.8 6.1 57 133-191 493-558 (566)
249 1a62_A RHO; transcription term 54.5 17 0.00059 28.9 4.9 42 142-183 5-56 (130)
250 1ylf_A RRF2 family protein; st 54.5 22 0.00077 27.8 5.5 44 146-190 28-71 (149)
251 2dql_A PEX protein; circadian 54.1 29 0.00099 26.3 5.9 49 157-205 51-105 (115)
252 3dkw_A DNR protein; CRP-FNR, H 54.0 5.6 0.00019 31.5 1.9 40 149-192 179-218 (227)
253 2kvc_A Putative uncharacterize 53.5 6.9 0.00024 30.8 2.3 43 191-233 39-81 (103)
254 2oz6_A Virulence factor regula 53.3 15 0.00051 28.5 4.2 40 149-192 165-204 (207)
255 2hoe_A N-acetylglucosamine kin 53.0 14 0.00048 32.9 4.6 40 139-179 25-64 (380)
256 1lva_A Selenocysteine-specific 52.3 53 0.0018 28.1 8.0 78 139-218 7-97 (258)
257 3vcf_A Probable integrase; cat 52.1 25 0.00086 29.4 5.6 90 133-228 9-123 (163)
258 3ryp_A Catabolite gene activat 51.8 15 0.0005 28.6 4.0 40 149-192 168-207 (210)
259 2p8t_A Hypothetical protein PH 51.4 60 0.002 27.8 8.1 58 146-207 28-85 (200)
260 4fe7_A Xylose operon regulator 51.4 30 0.001 30.5 6.5 77 132-219 303-381 (412)
261 2hgc_A YJCQ protein; SR346, st 50.9 18 0.00062 28.1 4.3 66 138-211 9-81 (102)
262 2xub_A DNA-directed RNA polyme 50.7 82 0.0028 29.9 9.7 86 134-219 19-126 (534)
263 2o03_A Probable zinc uptake re 50.6 52 0.0018 25.1 6.9 53 139-191 16-74 (131)
264 3rjp_A COVR; winged helix-turn 50.4 19 0.00066 25.6 4.2 36 183-218 15-51 (96)
265 3hh0_A Transcriptional regulat 50.1 69 0.0024 25.4 7.8 68 147-219 3-72 (146)
266 3iwz_A CAP-like, catabolite ac 50.0 18 0.00062 28.5 4.3 31 149-179 188-218 (230)
267 2obp_A Putative DNA-binding pr 49.5 46 0.0016 25.2 6.3 56 147-203 35-92 (96)
268 3u1d_A Uncharacterized protein 48.6 1E+02 0.0035 25.1 8.8 65 138-202 33-108 (151)
269 2b5a_A C.BCLI; helix-turn-heli 48.2 49 0.0017 21.7 5.8 61 136-216 11-71 (77)
270 3kcc_A Catabolite gene activat 48.1 21 0.00071 29.5 4.6 40 149-192 218-257 (260)
271 2k5j_A Uncharacterized protein 48.1 19 0.00065 26.1 3.8 30 187-217 12-41 (80)
272 2o0m_A Transcriptional regulat 47.7 3.9 0.00013 36.6 0.0 54 137-195 23-77 (345)
273 1r8e_A Multidrug-efflux transp 47.5 41 0.0014 28.2 6.4 69 146-219 3-74 (278)
274 1u5t_A Appears to BE functiona 47.0 9.4 0.00032 33.6 2.4 70 147-217 112-190 (233)
275 2lky_A Uncharacterized protein 46.9 7.6 0.00026 30.9 1.6 43 191-233 41-83 (112)
276 3qq6_A HTH-type transcriptiona 45.7 45 0.0016 22.8 5.4 62 137-217 12-73 (78)
277 2fe3_A Peroxide operon regulat 45.5 59 0.002 25.3 6.6 76 139-227 27-108 (145)
278 2g7u_A Transcriptional regulat 44.7 22 0.00075 30.1 4.3 85 138-226 18-108 (257)
279 3cuq_A Vacuolar-sorting protei 44.1 38 0.0013 29.7 5.8 71 147-217 93-177 (234)
280 1zyb_A Transcription regulator 43.9 22 0.00074 28.6 3.9 40 149-192 187-226 (232)
281 3akb_A Putative calcium bindin 43.9 49 0.0017 24.1 5.6 34 191-224 129-164 (166)
282 3sqn_A Conserved domain protei 43.6 53 0.0018 30.8 7.1 40 136-175 20-59 (485)
283 3hhh_A Transcriptional regulat 43.5 1E+02 0.0036 23.3 9.2 60 146-205 24-94 (116)
284 1j1j_A Translin; testis/brain 43.2 20 0.0007 31.1 3.9 55 136-211 113-168 (240)
285 1tc3_C Protein (TC3 transposas 42.8 30 0.001 20.4 3.7 38 137-176 12-49 (51)
286 1y6u_A XIS, excisionase from t 42.6 45 0.0016 23.7 5.1 50 143-198 11-62 (70)
287 1adr_A P22 C2 repressor; trans 42.4 69 0.0023 20.8 5.9 61 138-218 8-68 (76)
288 2l0k_A Stage III sporulation p 42.3 25 0.00084 26.5 3.7 53 134-202 7-59 (93)
289 3mq0_A Transcriptional repress 42.2 29 0.00099 30.0 4.7 86 138-226 34-125 (275)
290 3t76_A VANU, transcriptional r 41.7 38 0.0013 24.6 4.7 56 139-216 29-84 (88)
291 3f52_A CLP gene regulator (CLG 41.4 56 0.0019 23.7 5.6 73 135-227 28-100 (117)
292 3zq7_A KDP operon transcriptio 41.1 23 0.0008 25.5 3.4 35 184-218 22-57 (102)
293 2ia2_A Putative transcriptiona 40.8 20 0.0007 30.6 3.5 85 138-226 25-115 (265)
294 2ou2_A Histone acetyltransfera 40.7 17 0.00058 33.0 3.0 48 148-201 212-260 (280)
295 3lwf_A LIN1550 protein, putati 40.6 44 0.0015 27.0 5.3 45 146-190 42-86 (159)
296 1nd9_A Translation initiation 40.4 21 0.00072 22.5 2.7 45 150-203 4-48 (49)
297 1ayg_A Cytochrome C-552; elect 40.1 13 0.00046 25.2 1.8 16 190-205 63-78 (80)
298 3vk0_A NHTF, transcriptional r 40.1 35 0.0012 25.0 4.3 69 133-221 19-87 (114)
299 2jt1_A PEFI protein; solution 39.8 17 0.00059 26.4 2.5 24 196-219 6-35 (77)
300 1gks_A Cytochrome C551; haloph 39.6 15 0.00053 25.1 2.1 25 180-206 53-77 (78)
301 2k9q_A Uncharacterized protein 39.3 56 0.0019 21.9 5.0 61 139-219 6-66 (77)
302 3kdg_A DNA mismatch repair pro 39.2 1.1E+02 0.0039 25.1 7.8 68 132-199 111-192 (197)
303 4b6a_O 60S ribosomal protein L 39.1 18 0.00062 31.2 2.9 27 145-171 132-158 (199)
304 3lap_A Arginine repressor; arg 39.0 40 0.0014 28.1 4.9 58 134-196 20-84 (170)
305 1mzb_A Ferric uptake regulatio 38.9 68 0.0023 24.6 6.0 54 138-191 22-82 (136)
306 3f2g_A Alkylmercury lyase; MER 38.9 44 0.0015 29.1 5.3 49 134-187 22-70 (220)
307 3bd1_A CRO protein; transcript 38.6 52 0.0018 22.3 4.8 53 141-214 6-58 (79)
308 2pi2_A Replication protein A 3 38.5 6.6 0.00023 34.4 0.0 51 135-185 208-262 (270)
309 2xig_A Ferric uptake regulatio 38.1 1E+02 0.0034 24.2 7.0 53 139-191 32-90 (150)
310 3k6e_A CBS domain protein; str 37.7 9.3 0.00032 29.7 0.8 32 174-222 113-144 (156)
311 3gpv_A Transcriptional regulat 37.6 1.4E+02 0.0046 23.5 7.7 67 148-219 16-84 (148)
312 1qys_A TOP7; alpha-beta, novel 37.6 13 0.00043 28.7 1.4 31 181-211 9-52 (106)
313 3s8q_A R-M controller protein; 37.5 92 0.0031 20.9 6.0 63 135-217 11-73 (82)
314 1y7y_A C.AHDI; helix-turn-heli 37.5 67 0.0023 20.8 5.0 59 136-214 14-72 (74)
315 2r1j_L Repressor protein C2; p 37.2 74 0.0025 20.1 5.1 58 138-215 8-65 (68)
316 1qbj_A Protein (double-strande 37.2 19 0.00064 26.3 2.3 32 188-219 4-38 (81)
317 1yj7_A ESCJ; mixed alpha/beta, 37.1 59 0.002 26.9 5.6 49 159-207 8-58 (171)
318 3omt_A Uncharacterized protein 37.0 48 0.0016 21.9 4.3 52 145-216 18-69 (73)
319 3r4k_A Transcriptional regulat 36.6 66 0.0023 27.3 6.1 87 138-227 10-103 (260)
320 2dg6_A Putative transcriptiona 36.3 50 0.0017 28.3 5.2 66 150-219 2-69 (222)
321 3b7h_A Prophage LP1 protein 11 36.2 90 0.0031 20.4 6.9 62 136-216 8-69 (78)
322 1u5t_B Defective in vacuolar p 36.1 40 0.0014 27.8 4.5 51 135-187 100-159 (169)
323 2exv_A Cytochrome C-551; alpha 35.9 16 0.00055 24.6 1.7 16 190-205 65-80 (82)
324 2do1_A Nuclear protein HCC-1; 35.8 21 0.00072 24.8 2.3 34 143-176 10-47 (55)
325 2xi8_A Putative transcription 35.5 82 0.0028 19.8 5.5 54 143-216 9-62 (66)
326 1ucr_A Protein DSVD; dissimila 35.4 53 0.0018 24.6 4.5 43 136-178 5-52 (78)
327 1cch_A Cytochrome C551; electr 35.3 17 0.00057 24.5 1.7 16 190-205 65-80 (82)
328 1g8i_A Frequenin, neuronal cal 35.3 64 0.0022 24.3 5.2 23 151-173 13-35 (190)
329 2jzy_A Transcriptional regulat 35.2 33 0.0011 25.5 3.5 35 184-218 22-57 (112)
330 2zxj_A Transcriptional regulat 35.2 26 0.00088 27.1 2.9 34 185-218 31-65 (120)
331 3v4g_A Arginine repressor; vib 35.2 1E+02 0.0036 26.0 6.9 63 131-196 30-97 (180)
332 2zxy_A Cytochrome C552, cytoch 34.5 20 0.00067 24.1 1.9 16 190-205 70-85 (87)
333 3eet_A Putative GNTR-family tr 34.4 1.1E+02 0.0037 26.3 7.2 75 133-210 32-127 (272)
334 4a17_I RPL13A, 60S ribosomal p 34.4 26 0.00088 30.2 3.0 27 145-171 131-157 (198)
335 3cu4_A Cytochrome C family pro 34.0 20 0.0007 24.4 2.0 17 190-206 67-83 (85)
336 2hwv_A DNA-binding response re 34.0 51 0.0017 25.0 4.5 35 184-218 37-72 (121)
337 3dr0_A Cytochrome C6; photosyn 33.9 23 0.00078 24.0 2.2 16 191-206 72-87 (93)
338 3iz5_K 60S ribosomal protein L 33.8 26 0.00089 30.4 3.0 27 145-171 137-163 (206)
339 1c53_A Cytochrome C553; electr 33.7 20 0.0007 24.3 1.9 16 190-205 63-78 (79)
340 2pmu_A Response regulator PHOP 33.2 42 0.0014 24.7 3.8 34 185-218 29-63 (110)
341 3dmi_A Cytochrome C6; electron 33.0 22 0.00074 24.1 2.0 40 159-206 43-82 (88)
342 3qao_A LMO0526 protein, MERR-l 32.9 1.6E+02 0.0054 25.3 7.9 67 148-219 3-71 (249)
343 3k69_A Putative transcription 32.9 49 0.0017 26.6 4.4 46 146-191 26-71 (162)
344 2k4j_A Putative transcriptiona 32.8 40 0.0014 25.3 3.6 34 185-218 36-70 (115)
345 3gp4_A Transcriptional regulat 32.8 1.1E+02 0.0039 24.0 6.4 65 149-218 3-69 (142)
346 4f3l_B BMAL1B; BHLH, PAS, circ 32.7 53 0.0018 29.5 5.0 84 106-194 29-115 (387)
347 3eyy_A Putative iron uptake re 32.6 92 0.0032 24.2 5.9 53 139-191 24-81 (145)
348 1c75_A Cytochrome C-553; heme, 32.2 22 0.00074 23.7 1.8 16 190-205 54-69 (71)
349 1kx2_A Mono-heme C-type cytoch 32.2 17 0.00059 25.0 1.3 16 190-205 64-79 (81)
350 2z9m_A Response regulator YYCF 32.1 31 0.0011 25.8 2.9 35 184-218 30-65 (120)
351 3axj_A GM27569P, translin; tra 31.9 33 0.0011 30.0 3.4 55 136-211 116-171 (249)
352 3l4g_A Phenylalanyl-tRNA synth 31.8 9.8 0.00034 37.0 0.0 78 138-216 9-96 (508)
353 1gdv_A Cytochrome C6; RED ALGA 31.7 24 0.00081 23.7 2.0 25 180-206 56-80 (85)
354 3mwm_A ZUR, putative metal upt 31.4 1.4E+02 0.0048 23.0 6.7 54 138-191 18-77 (139)
355 2qlz_A Transcription factor PF 31.2 62 0.0021 27.8 5.0 57 136-195 166-222 (232)
356 2zon_G Cytochrome C551; nitrit 31.0 27 0.00091 23.9 2.2 17 190-206 69-85 (87)
357 2w57_A Ferric uptake regulatio 30.9 93 0.0032 24.4 5.7 54 138-191 21-81 (150)
358 1f1f_A Cytochrome C6; heme, pr 30.6 25 0.00086 23.9 2.0 16 190-205 68-83 (89)
359 3ph2_B Cytochrome C6; photosyn 30.6 25 0.00086 23.6 2.0 16 191-206 66-81 (86)
360 1opc_A OMPR, OMPRC; transcript 30.3 39 0.0013 24.7 3.1 34 185-218 26-60 (110)
361 2ozu_A Histone acetyltransfera 30.2 40 0.0014 30.7 3.7 43 146-194 212-254 (284)
362 1ls9_A Cytochrome C6; omega lo 30.1 26 0.00088 24.1 2.0 40 159-206 46-85 (91)
363 2kvu_A MKL/myocardin-like prot 29.7 39 0.0013 25.1 2.9 34 143-176 26-63 (75)
364 1x57_A Endothelial differentia 29.6 1.4E+02 0.0047 20.5 6.3 60 135-214 13-72 (91)
365 1jhf_A LEXA repressor; LEXA SO 29.4 1.1E+02 0.0036 24.5 5.9 43 136-178 12-56 (202)
366 2d1h_A ST1889, 109AA long hypo 29.4 43 0.0015 23.2 3.1 26 192-217 20-45 (109)
367 1wve_C 4-cresol dehydrogenase 29.3 27 0.00092 23.9 2.0 18 190-207 57-74 (80)
368 1c6r_A Cytochrome C6; electron 29.1 27 0.00094 23.7 2.0 16 191-206 68-83 (89)
369 1h1j_S THO1 protein; SAP domai 29.1 37 0.0013 23.2 2.6 32 143-174 5-40 (51)
370 3f1p_B ARYL hydrocarbon recept 29.0 13 0.00045 25.6 0.3 17 178-194 14-30 (121)
371 2kfs_A Conserved hypothetical 29.0 72 0.0025 26.3 4.8 44 147-196 30-73 (148)
372 2ra5_A Putative transcriptiona 29.0 12 0.00042 31.8 0.1 42 147-189 39-80 (247)
373 1a56_A C-551, ferricytochrome 28.9 23 0.00078 24.0 1.5 16 190-205 64-79 (81)
374 3op9_A PLI0006 protein; struct 28.9 1.3E+02 0.0044 21.6 5.8 64 136-219 10-73 (114)
375 1cc5_A Cytochrome C5; electron 28.9 26 0.00088 24.6 1.8 16 190-205 67-82 (83)
376 3dgp_A RNA polymerase II trans 28.5 34 0.0012 25.5 2.5 24 183-206 52-75 (80)
377 1cyi_A Cytochrome C6, cytochro 28.4 29 0.00098 23.7 2.0 16 191-206 67-82 (90)
378 2htj_A P fimbrial regulatory p 28.3 40 0.0014 23.3 2.8 23 197-219 3-25 (81)
379 3olo_A Two-component sensor hi 28.3 43 0.0015 22.1 2.8 17 178-194 25-41 (118)
380 2o3f_A Putative HTH-type trans 28.3 33 0.0011 26.0 2.4 28 191-219 19-50 (111)
381 3dp5_A OMCF, cytochrome C fami 28.2 26 0.00091 25.2 1.8 15 191-205 82-96 (99)
382 2d0s_A Cytochrome C, cytochrom 28.0 22 0.00076 24.0 1.3 16 190-205 62-77 (79)
383 2hqn_A Putative transcriptiona 27.9 38 0.0013 24.7 2.7 34 185-218 24-58 (109)
384 1cno_A Cytochrome C552; electr 27.6 32 0.0011 23.7 2.1 17 191-207 67-83 (87)
385 1zrj_A E1B-55KDA-associated pr 27.3 51 0.0017 22.4 3.0 32 143-174 10-45 (50)
386 3l09_A Putative transcriptiona 27.1 2.6E+02 0.009 24.6 8.5 65 136-200 29-97 (266)
387 3o18_A C-phycocyanin alpha sub 27.1 15 0.0005 30.4 0.3 39 183-223 13-53 (162)
388 1d8j_A General transcription f 27.0 1.6E+02 0.0056 22.0 6.0 55 134-191 11-75 (81)
389 2jrf_A Tubulin polymerization- 26.9 71 0.0024 27.2 4.5 31 151-181 79-113 (184)
390 2ciw_A Chloroperoxidase; oxido 26.8 12 0.0004 34.2 -0.4 35 195-229 32-69 (299)
391 2ce0_A Cytochrome C6; chloropl 26.7 35 0.0012 23.9 2.2 17 190-206 78-94 (105)
392 3dte_A IRRE protein; radiotole 26.5 61 0.0021 29.1 4.3 34 149-182 162-195 (301)
393 3rk3_E Complexin-1; snare prot 26.5 1.4E+02 0.005 21.3 5.3 25 52-76 19-43 (63)
394 3lmm_A Uncharacterized protein 26.4 14 0.00047 36.0 0.0 58 137-196 519-576 (583)
395 1xd7_A YWNA; structural genomi 26.3 60 0.0021 25.1 3.7 40 150-190 25-64 (145)
396 2pij_A Prophage PFL 6 CRO; tra 26.3 1.3E+02 0.0046 19.3 5.7 45 140-191 7-53 (67)
397 1zel_A Hypothetical protein RV 26.2 58 0.002 29.8 4.0 57 135-193 17-78 (298)
398 1dqe_A PBP, pheromone-binding 26.2 38 0.0013 26.3 2.5 37 179-221 59-100 (137)
399 1p94_A Plasmid partition prote 26.1 70 0.0024 23.3 3.8 28 189-217 39-66 (76)
400 2jn6_A Protein CGL2762, transp 26.0 85 0.0029 22.2 4.2 43 134-176 9-51 (97)
401 1f5n_A Interferon-induced guan 26.0 4.2E+02 0.014 25.8 10.4 12 135-146 571-582 (592)
402 4dj2_A Period circadian protei 25.8 31 0.0011 30.8 2.2 23 172-194 32-55 (320)
403 3bs3_A Putative DNA-binding pr 25.8 1.4E+02 0.0047 19.4 5.0 54 142-215 17-70 (76)
404 3gud_A NECK appendage protein; 25.7 57 0.0019 26.4 3.5 56 157-212 44-123 (129)
405 2kpj_A SOS-response transcript 25.7 1.7E+02 0.0058 20.3 6.4 62 136-217 10-71 (94)
406 1qgp_A Protein (double strande 25.6 37 0.0013 24.1 2.2 29 191-219 11-42 (77)
407 3g5g_A Regulatory protein; tra 25.5 1.6E+02 0.0056 21.1 5.8 63 135-217 28-90 (99)
408 2ve8_A FTSK, DNA translocase F 25.3 1.4E+02 0.0049 21.8 5.3 50 132-181 8-57 (73)
409 3l9f_A Putative uncharacterize 25.1 97 0.0033 26.0 5.0 49 159-207 68-121 (204)
410 3g13_A Putative conjugative tr 25.1 80 0.0027 24.6 4.3 52 132-184 60-113 (169)
411 3qrx_A Centrin; calcium-bindin 24.9 1.8E+02 0.006 21.2 6.0 30 190-219 133-164 (169)
412 1s96_A Guanylate kinase, GMP k 24.9 77 0.0026 26.3 4.4 31 185-215 129-159 (219)
413 3fv6_A YQZB protein; CBS domai 24.9 34 0.0012 25.8 2.0 90 134-228 8-100 (159)
414 3f1p_A Endothelial PAS domain- 24.6 32 0.0011 23.3 1.6 17 178-194 11-27 (117)
415 3ivp_A Putative transposon-rel 24.6 1.8E+02 0.006 21.3 6.0 64 135-218 12-75 (126)
416 2vml_A Phycocyanin alpha chain 24.5 11 0.00039 31.0 -0.9 44 178-223 5-53 (162)
417 2wcj_A General odorant-binding 24.5 39 0.0013 26.5 2.3 37 179-221 59-100 (141)
418 2zkr_j 60S ribosomal protein L 24.5 18 0.00063 31.3 0.4 27 145-171 132-158 (203)
419 3a0s_A Sensor protein; PAS-fol 24.4 42 0.0014 20.5 2.1 14 181-194 7-20 (96)
420 1lmb_3 Protein (lambda repress 24.3 1.2E+02 0.0042 20.6 4.7 61 136-216 18-78 (92)
421 1gxq_A PHOB, phosphate regulon 24.3 56 0.0019 23.7 3.0 34 185-218 26-60 (106)
422 2ef8_A C.ECOT38IS, putative tr 24.1 1.6E+02 0.0055 19.4 5.7 67 136-218 11-77 (84)
423 1vjq_A Designed protein; struc 24.1 1.8E+02 0.0061 20.0 5.8 46 160-207 8-61 (79)
424 3ix1_A N-formyl-4-amino-5-amin 23.9 1.3E+02 0.0045 24.7 5.6 86 132-222 203-301 (302)
425 4dj3_A Period circadian protei 23.5 21 0.00072 31.9 0.6 23 172-194 32-55 (317)
426 3ol3_A Putative uncharacterize 23.5 62 0.0021 25.4 3.2 41 191-231 44-88 (107)
427 2l4d_A SCO1/SENC family protei 23.4 41 0.0014 23.7 2.1 16 191-206 81-96 (110)
428 3fc7_A HTR-like protein, senso 23.3 43 0.0015 22.4 2.1 15 180-194 33-47 (125)
429 3mcr_A NADH dehydrogenase, sub 23.2 43 0.0015 29.1 2.5 47 160-206 75-128 (213)
430 1vz0_A PARB, chromosome partit 23.2 18 0.00062 30.9 0.1 79 149-232 135-222 (230)
431 1w2l_A Cytochrome oxidase subu 23.0 40 0.0014 23.2 1.9 15 191-205 83-97 (99)
432 1u8b_A ADA polyprotein; protei 22.8 71 0.0024 23.9 3.5 39 132-170 77-115 (133)
433 3gby_A Uncharacterized protein 22.8 56 0.0019 23.5 2.7 24 171-194 93-118 (128)
434 1o5l_A Transcriptional regulat 22.6 18 0.00062 28.6 0.0 40 149-192 165-204 (213)
435 2x48_A CAG38821; archeal virus 22.5 1.3E+02 0.0043 18.9 4.2 33 185-219 8-42 (55)
436 1ryl_A Hypothetical protein YF 22.4 74 0.0025 26.0 3.7 29 187-218 83-112 (167)
437 1wwh_A Nucleoporin 35, nucleop 22.4 86 0.0029 24.8 3.9 64 158-227 30-94 (119)
438 3dom_A RNA polymerase II trans 22.4 45 0.0015 26.3 2.3 24 183-206 80-103 (108)
439 1fpw_A Yeast frequenin, calciu 22.1 1.1E+02 0.0037 23.0 4.4 10 191-200 80-89 (190)
440 3lqn_A CBS domain protein; csg 22.0 55 0.0019 24.0 2.6 33 159-195 103-136 (150)
441 4esw_A Pyrimidine biosynthesis 22.0 73 0.0025 27.2 3.8 87 131-226 215-309 (342)
442 3cuq_C Vacuolar protein-sortin 22.0 3.1E+02 0.011 22.8 7.5 77 139-216 37-132 (176)
443 3q9s_A DNA-binding response re 22.0 1.5E+02 0.0051 24.1 5.6 58 160-217 139-210 (249)
444 1wdc_C Scallop myosin; calcium 22.0 90 0.0031 22.6 3.8 29 191-219 117-149 (156)
445 2pq8_A Probable histone acetyl 22.0 46 0.0016 30.2 2.5 46 147-198 207-253 (278)
446 4b4t_S RPN3, 26S proteasome re 21.9 24 0.00082 34.4 0.7 56 148-203 401-465 (523)
447 2e1n_A PEX, period extender; c 21.9 95 0.0032 24.4 4.1 48 157-204 63-116 (138)
448 2zfw_A PEX; five alpha-helices 21.8 44 0.0015 26.9 2.2 45 158-202 74-124 (148)
449 2r78_A Sensor protein; sensory 21.6 64 0.0022 22.3 2.8 19 176-194 21-39 (117)
450 3luq_A Sensor protein; PAS, hi 21.6 68 0.0023 20.7 2.8 19 176-194 13-31 (114)
451 2k5e_A Uncharacterized protein 21.6 99 0.0034 21.9 3.8 31 146-176 38-68 (73)
452 2zzs_A Cytochrome C554; C-type 21.4 48 0.0017 23.3 2.1 15 191-205 87-101 (103)
453 1wpn_A Manganese-dependent ino 21.4 18 0.00063 29.0 -0.2 43 173-216 138-182 (188)
454 3nrw_A Phage integrase/site-sp 21.4 1.9E+02 0.0064 20.6 5.4 41 128-174 28-68 (117)
455 1olt_A Oxygen-independent copr 21.4 1.7E+02 0.0057 26.8 6.3 53 139-195 373-429 (457)
456 1ywy_A Hypothetical protein PA 21.3 48 0.0017 24.6 2.1 20 181-200 40-59 (74)
457 1kon_A Protein YEBC, YEBC; alp 21.3 41 0.0014 29.8 2.0 57 172-229 157-216 (249)
458 2lnb_A Z-DNA-binding protein 1 21.2 2E+02 0.0069 21.6 5.5 45 135-179 20-65 (80)
459 2z99_A Putative uncharacterize 21.2 2.5E+02 0.0087 24.2 7.0 63 141-204 24-91 (219)
460 2l2e_A Calcium-binding protein 21.2 1.9E+02 0.0065 21.7 5.7 16 206-221 77-92 (190)
461 4a0z_A Transcription factor FA 21.0 73 0.0025 26.4 3.4 27 194-220 12-38 (190)
462 1mw7_A Hypothetical protein HP 20.9 32 0.0011 30.4 1.2 49 180-228 165-215 (240)
463 1xmk_A Double-stranded RNA-spe 20.8 58 0.002 23.8 2.5 24 196-219 13-36 (79)
464 2m0n_A Putative uncharacterize 20.7 55 0.0019 26.0 2.4 43 191-233 41-90 (112)
465 3bwl_A Sensor protein; structu 20.7 70 0.0024 21.7 2.8 19 176-194 27-45 (126)
466 1jko_C HIN recombinase, DNA-in 20.6 49 0.0017 19.9 1.8 32 137-170 12-43 (52)
467 3zyy_X Iron-sulfur cluster bin 20.6 32 0.0011 34.2 1.3 20 159-178 443-462 (631)
468 2zp2_A Kinase A inhibitor; KIP 20.5 60 0.0021 26.5 2.7 21 150-170 16-36 (141)
469 2cvb_A Probable thiol-disulfid 20.5 1.6E+02 0.0054 22.4 5.1 66 132-210 83-164 (188)
470 1bm9_A RTP, TER, replication t 20.4 2.5E+02 0.0086 22.2 6.3 48 157-204 49-105 (122)
471 1mz4_A Cytochrome C550; PSII a 20.1 51 0.0017 24.7 2.1 16 191-206 107-122 (137)
472 2ojp_A DHDPS, dihydrodipicolin 20.1 91 0.0031 27.1 4.0 52 158-210 17-72 (292)
No 1
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=100.00 E-value=2.5e-35 Score=220.85 Aligned_cols=69 Identities=49% Similarity=0.830 Sum_probs=66.3
Q ss_pred ccchhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHH
Q 026130 130 DGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKA 198 (243)
Q Consensus 130 ~~~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~a 198 (243)
++++++|++||+|||.+|||+|+|||++|||+|++||+||++|+++|+|||||||||||||||++||++
T Consensus 3 ~~~~~ll~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~~a 71 (72)
T 1wi9_A 3 SGSSGFLTEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGPSS 71 (72)
T ss_dssp CSSCCHHHHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSCCC
T ss_pred hhHHHHHHHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHhhc
Confidence 357899999999999999999999999999999999999999999999999999999999999999864
No 2
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.32 E-value=0.001 Score=48.08 Aligned_cols=69 Identities=10% Similarity=0.114 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~ 205 (243)
...+.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|...-|.|..|+++|+..+..+..+|.+
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~ 95 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKN 95 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHH
Confidence 356677777768899999999999999999999999999999999888888999999999999998875
No 3
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.22 E-value=0.0018 Score=46.74 Aligned_cols=68 Identities=13% Similarity=0.235 Sum_probs=57.5
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHHHh
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI~~ 205 (243)
..+.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|...- |.|.+|+++|+.-...+..++..
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~ 90 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSS 90 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHH
Confidence 455667666778999999999999999999999999999999766 66788999999988877777654
No 4
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.67 E-value=0.008 Score=44.57 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=58.5
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
..+.+| .+.-+.+.+||..+|++..-+-..|+.|+..|-|.-.-+.|..|+++|+.-+..+..++...
T Consensus 25 ~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~~ 92 (114)
T 2oqg_A 25 EILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLERI 92 (114)
T ss_dssp HHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHHH
Confidence 455667 44558899999999999999999999999999999888888889999999988888887764
No 5
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.66 E-value=0.0085 Score=43.81 Aligned_cols=67 Identities=18% Similarity=0.199 Sum_probs=57.4
Q ss_pred HHHHHHHhcCccchHHH----HHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDL----AAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdL----A~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.-+...+| |..+|++..-+-..|+.|++.|-|.-..|.|.++|++|+.-...+..+..
T Consensus 12 ~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~ 82 (99)
T 1tbx_A 12 IVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKT 82 (99)
T ss_dssp HHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHH
Confidence 45667777777888999 99999999999999999999999999999999999999987766655543
No 6
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.61 E-value=0.0038 Score=46.37 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 181 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV 181 (243)
.|+..++||..+..|.+.|||.+||++..-+-.-|..|++.|.|.=+
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 37899999999999999999999999988888889999999998543
No 7
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.61 E-value=0.0086 Score=43.83 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=58.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~ 205 (243)
..+.++.. .-+.+.+||..+|++..-+-..|+.|+..|-|.-.-+.+..|.++++..+..+..++..
T Consensus 27 ~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~ 93 (98)
T 3jth_A 27 QILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHS 93 (98)
T ss_dssp HHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHH
Confidence 45566765 67889999999999999999999999999999998888888999999999988888754
No 8
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.55 E-value=0.005 Score=46.85 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=53.2
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI 203 (243)
...+.+|..+. +...+||..+|++..-|-..|..|++.|-|+-.- |-|.++|++|+.-...+....
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 35677888888 9999999999999999999999999999999988 458899999998888777765
No 9
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.51 E-value=0.0054 Score=46.74 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM 182 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi 182 (243)
|+..++||..+..|.+.|||..||++..-+-.=|..|++.|.|.=+-
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 78899999999999999999999999888888899999999999885
No 10
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.51 E-value=0.0048 Score=44.35 Aligned_cols=57 Identities=12% Similarity=0.292 Sum_probs=47.0
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce--eeeCCCCeEEEcHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG--VMDDRGKYIYISQA 194 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG--ViDDRGKFIYIS~e 194 (243)
..+.+|..+.-+.+.|||..||++..-|-..|+.|+..|.|.. .-..+|.|.++++.
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 5677888777889999999999999999999999999999984 34456667777654
No 11
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.47 E-value=0.011 Score=45.22 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=60.1
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcC
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rG 207 (243)
..+.+|.. .-+.+.+||..+|++..-|-..|+.|+..|-|+..-+.|.+|.+++++-+..+..|+....
T Consensus 22 ~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~~ 90 (118)
T 3f6o_A 22 AVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQQ 90 (118)
T ss_dssp HHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHHH
Confidence 45566764 4568899999999999999999999999999999999889999999999999998887643
No 12
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.46 E-value=0.012 Score=45.40 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=55.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~ 205 (243)
..+.++..+.-+.+.+||..+|++..-+-..|+.|+..|.|...-+.|..|.++++..+..+..++..
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~ 113 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALA 113 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHH
Confidence 34566765667889999999999999999999999999999988777888999999999999888754
No 13
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.46 E-value=0.0097 Score=46.98 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=59.9
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce---eeeCC--CC----eEEEcH---HHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYISQ---AEMKAVADYIK 204 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG---ViDDR--GK----FIYIS~---eEl~aVA~fI~ 204 (243)
...+.++..+--+.+.+||..+|++..-|-.+|+.|+..|.|.+ ++|.+ |. ||.|+. ..+..|+..|.
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~~l~ 90 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLE 90 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCCCCHHHHHHHHh
Confidence 46778888888899999999999999999999999999999987 45543 44 777763 26889999998
Q ss_pred hcCCc
Q 026130 205 RQGRV 209 (243)
Q Consensus 205 ~rGRV 209 (243)
..--|
T Consensus 91 ~~peV 95 (152)
T 2cg4_A 91 SLDEV 95 (152)
T ss_dssp TCTTE
T ss_pred CCcCe
Confidence 86554
No 14
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.45 E-value=0.013 Score=43.87 Aligned_cols=66 Identities=5% Similarity=0.115 Sum_probs=55.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+|. +.-+.+.+||..+|++..-+-..|+.|+..|.|...-+.|..|.++++..+..+...|.
T Consensus 30 ~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~ 95 (106)
T 1r1u_A 30 RIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAI 95 (106)
T ss_dssp HHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 3455666 34468999999999999999999999999999998888777788899999988887765
No 15
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.42 E-value=0.0092 Score=46.80 Aligned_cols=73 Identities=14% Similarity=0.229 Sum_probs=60.1
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce---eeeCC--CC----eEEEc----HHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYIS----QAEMKAVADYI 203 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG---ViDDR--GK----FIYIS----~eEl~aVA~fI 203 (243)
...+.++..+--+...+||..+|++..-|-.+|+.|+..|.|.+ ++|.+ |. ||.|+ +..+..|+.+|
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l 85 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKL 85 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEecCChhHHHHHHHHH
Confidence 35677887777899999999999999999999999999999987 56643 43 77777 66789999999
Q ss_pred HhcCCc
Q 026130 204 KRQGRV 209 (243)
Q Consensus 204 ~~rGRV 209 (243)
...--|
T Consensus 86 ~~~p~V 91 (150)
T 2pn6_A 86 AQIPGV 91 (150)
T ss_dssp HTSTTE
T ss_pred hcCchh
Confidence 886444
No 16
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.35 E-value=0.012 Score=44.51 Aligned_cols=67 Identities=9% Similarity=0.186 Sum_probs=57.1
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
.+.+|.. .-+.+.+||..+|++..-+-..|+.|+..|.|...-+.|..|.++++..+..+..+|...
T Consensus 30 IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~~~ 96 (108)
T 2kko_A 30 ILDLLAQ-GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQVV 96 (108)
T ss_dssp HHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHH
Confidence 4445654 556889999999999999999999999999999888878888899999999998888653
No 17
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.31 E-value=0.022 Score=43.36 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=56.9
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|+-.- |-|.++|++|+.-...+..+..
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHH
Confidence 456677777889999999999999999999999999999999877 4488999999988777665544
No 18
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.30 E-value=0.015 Score=45.65 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=59.3
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC----eEEE--cHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YIYI--SQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK----FIYI--S~eEl~aVA~fI~~ 205 (243)
..++.++..+.-+...+||..+|++..-|-.+|+.|+..|.|.++ +|.+ |. ||.| .+.....|+..|..
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~ 91 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISEISD 91 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHHHHHHHc
Confidence 467788888888999999999999999999999999999999765 4543 54 5554 57778888888887
Q ss_pred cCCc
Q 026130 206 QGRV 209 (243)
Q Consensus 206 rGRV 209 (243)
.--|
T Consensus 92 ~peV 95 (151)
T 2dbb_A 92 IEYV 95 (151)
T ss_dssp CTTE
T ss_pred CCCe
Confidence 6544
No 19
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.27 E-value=0.027 Score=42.75 Aligned_cols=66 Identities=17% Similarity=0.168 Sum_probs=53.9
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|.. +.-+.+.+||..+|++..-|-..|+.|++.|-|+-..| -|.++|++|+.-...+....
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 45667777 77899999999999999999999999999999988754 48999999998776655543
No 20
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.26 E-value=0.016 Score=41.60 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=52.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee--CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD--DRGKFIYIS~eEl~aVA~f 202 (243)
..+.+|..+.-+.+.+||..+|++..-|-..|+.|+..|-|...-+ .|..|+|+|+.-...+..+
T Consensus 24 ~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~~~ 90 (109)
T 1sfx_A 24 RIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEF 90 (109)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHHHH
Confidence 4566776667789999999999999999999999999999998876 4567888887655444333
No 21
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.24 E-value=0.027 Score=42.66 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|.-.-| -|.++|++|+.-...+..+
T Consensus 33 ~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 100 (144)
T 1lj9_A 33 LYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 100 (144)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHH
Confidence 4567777788889999999999999999999999999999998874 4888999999876655443
No 22
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.19 E-value=0.0098 Score=44.05 Aligned_cols=50 Identities=14% Similarity=0.243 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHhc------CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee
Q 026130 134 DLLADFVEYIKKH------KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD 183 (243)
Q Consensus 134 ~lL~~Fi~yIK~~------KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD 183 (243)
..++..++||+.. ..+.+.|||..||+++.-|-.-|..|++.|.|.=+-.
T Consensus 4 ~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 4 SIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp THHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 3456677777776 8999999999999998888889999999999965543
No 23
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.17 E-value=0.016 Score=42.77 Aligned_cols=67 Identities=7% Similarity=0.120 Sum_probs=57.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~ 205 (243)
..+.++... -+.+.+||..+|++..-+-..|+.|+..|-|...-+.+..|.++|++.+..+..++..
T Consensus 27 ~Il~~L~~~-~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~ 93 (102)
T 3pqk_A 27 MLVCTLVEG-EFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYT 93 (102)
T ss_dssp HHHHHHHTC-CBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHH
Confidence 345666554 4789999999999999999999999999999998888889999999988888887753
No 24
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.11 E-value=0.011 Score=41.95 Aligned_cols=50 Identities=8% Similarity=0.142 Sum_probs=41.4
Q ss_pred HHHHHHHhc-CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 138 DFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 138 ~Fi~yIK~~-KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
..++++..+ .-+.+.+||..||++.+.|...|+.|.+.|.|.- +.+|.|.
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~--~~~G~y~ 64 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS--PSPKYWS 64 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--EETTEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec--CCCceEe
Confidence 466666655 6799999999999999999999999999999643 5678664
No 25
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.06 E-value=0.041 Score=42.30 Aligned_cols=67 Identities=9% Similarity=0.094 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
...|..++.++..+.-+.+.+||..+|++..-|-..|+.|+..|-|.-. ++++|++|+.-...+...
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHHH
Confidence 3467777777777788999999999999999999999999999888754 568999999765554443
No 26
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.03 E-value=0.032 Score=43.39 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=56.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.-+.+.+||..+|++.+-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+..+..
T Consensus 54 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 123 (159)
T 3s2w_A 54 PFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKK 123 (159)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 5566777788899999999999999999999999999999998874 478899999987766665443
No 27
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.00 E-value=0.054 Score=39.67 Aligned_cols=57 Identities=12% Similarity=0.099 Sum_probs=48.1
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.+.+.+||..+|++.+-+-.-|+.|++.|-|.---|-|.++|++|+.-...+.....
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~ 86 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKS 86 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHH
Confidence 388999999999999999999999999999955556688999999987766555443
No 28
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.99 E-value=0.027 Score=43.38 Aligned_cols=74 Identities=19% Similarity=0.332 Sum_probs=59.1
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC----eE--EEcHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YI--YISQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK----FI--YIS~eEl~aVA~fI~~ 205 (243)
...+.++..+--+...+||..+|++..-+-.+|+.|+..|.|.++ +|.+ |. || .+.+..+..|+..|..
T Consensus 7 ~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~ 86 (141)
T 1i1g_A 7 KIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKE 86 (141)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhc
Confidence 356777777666799999999999999999999999999999765 3332 43 22 2378889999999999
Q ss_pred cCCcc
Q 026130 206 QGRVS 210 (243)
Q Consensus 206 rGRVS 210 (243)
.+.|.
T Consensus 87 ~~~v~ 91 (141)
T 1i1g_A 87 YDFVK 91 (141)
T ss_dssp STTEE
T ss_pred CCCeE
Confidence 87765
No 29
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.98 E-value=0.032 Score=45.23 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=59.9
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
..+.+|. ..-+.+.+||..+|++..-|-.-|+.|...|.|+..-|.|.+|++||+.-+..+..++...
T Consensus 62 ~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~~ 129 (151)
T 3f6v_A 62 RLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDSF 129 (151)
T ss_dssp HHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHH
Confidence 4556676 4557899999999999999999999999999999999989999999999999999988754
No 30
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.97 E-value=0.024 Score=42.40 Aligned_cols=65 Identities=9% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|+-.-| -|.++|++|+.-...+..+
T Consensus 37 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (139)
T 3bja_A 37 GVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQV 104 (139)
T ss_dssp HHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHH
Confidence 5667777788899999999999999999999999999999987754 4888999999876665544
No 31
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=95.94 E-value=0.022 Score=45.50 Aligned_cols=73 Identities=16% Similarity=0.362 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce---eeeCC--CC----eE--EEcHHH--HHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YI--YISQAE--MKAVADYI 203 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG---ViDDR--GK----FI--YIS~eE--l~aVA~fI 203 (243)
...+.++..+--+.+.+||..+|++..-|-.+|+.|+..|.|.+ ++|.+ |. || .+++.. +..|+.+|
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l 92 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASV 92 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCchHHHHHHHHH
Confidence 46778888877789999999999999999999999999999986 45544 44 33 346654 88899888
Q ss_pred HhcCCc
Q 026130 204 KRQGRV 209 (243)
Q Consensus 204 ~~rGRV 209 (243)
...-.|
T Consensus 93 ~~~peV 98 (162)
T 2p5v_A 93 RKWPEV 98 (162)
T ss_dssp TTCTTE
T ss_pred hcChhh
Confidence 776544
No 32
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=95.93 E-value=0.047 Score=41.13 Aligned_cols=67 Identities=19% Similarity=0.291 Sum_probs=55.7
Q ss_pred HHHHHHHhcC--ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~K--vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+|-.+. -+.+.+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 5566777765 889999999999999999999999999999998765 489999999987776665443
No 33
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=95.92 E-value=0.028 Score=42.11 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+..+
T Consensus 42 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (140)
T 2nnn_A 42 AALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAG 109 (140)
T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHH
Confidence 4566777777899999999999999999999999999999998754 4788999999876655544
No 34
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.89 E-value=0.01 Score=46.80 Aligned_cols=73 Identities=18% Similarity=0.275 Sum_probs=57.8
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCC--C----CeEEEc---HHHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--G----KYIYIS---QAEMKAVADYIK 204 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDR--G----KFIYIS---~eEl~aVA~fI~ 204 (243)
...+.++..+--+.+.+||..+|++..-|-.+|+.|+..|.|.++. |.+ | -||.|+ +.....++.+|.
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~~~~~~~~~l~ 89 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLE 89 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTTSCCCHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCCCHHHHHHHHh
Confidence 3677788777789999999999999999999999999999997654 443 3 377777 555677888887
Q ss_pred hcCCc
Q 026130 205 RQGRV 209 (243)
Q Consensus 205 ~rGRV 209 (243)
..-.|
T Consensus 90 ~~p~V 94 (150)
T 2w25_A 90 HIEEV 94 (150)
T ss_dssp TCTTE
T ss_pred cCcCe
Confidence 65444
No 35
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.88 E-value=0.047 Score=42.35 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=54.3
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-|-..|+.|+..|-|+-.- |-|.++|++|+.-...+..+
T Consensus 56 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 123 (162)
T 3cjn_A 56 RALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRL 123 (162)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence 456677777789999999999999999999999999999999876 45889999999765554443
No 36
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.87 E-value=0.045 Score=42.31 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+..+
T Consensus 48 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 115 (154)
T 2eth_A 48 YAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEI 115 (154)
T ss_dssp HHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHH
Confidence 4566777777899999999999999999999999999999998774 4788999999876655544
No 37
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.86 E-value=0.043 Score=41.78 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=53.8
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|..+.-+...+||..+|++..-|-..|+.|++.|-|.-.-| -|.++|++|+.-...+....
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 4556676777899999999999999999999999999999998764 47889999998766655443
No 38
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.84 E-value=0.053 Score=41.34 Aligned_cols=65 Identities=9% Similarity=0.158 Sum_probs=54.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-..| -|.++|++|+.-...+..+
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 111 (152)
T 3bj6_A 44 AILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAI 111 (152)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHH
Confidence 4566777777899999999999999999999999999999998765 4788999999866555443
No 39
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.84 E-value=0.038 Score=41.52 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=53.7
Q ss_pred HHHHHHHhcC--ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~K--vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+. -+...+||..+|++..-+-..|+.|++.|-|.-.-| -|.++|++|+.-...+..+
T Consensus 38 ~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~ 107 (141)
T 3bro_A 38 TIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 107 (141)
T ss_dssp HHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHH
Confidence 4566777776 789999999999999999999999999999987765 4788999999875544433
No 40
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=95.82 E-value=0.033 Score=43.56 Aligned_cols=67 Identities=10% Similarity=0.137 Sum_probs=56.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+|..+.-+.+.+||..+|++..-|-..|..|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 50 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 50 TALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHH
Confidence 5566777788899999999999999999999999999999998875 388999999987666555443
No 41
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.82 E-value=0.029 Score=42.08 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=54.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|+-..| -|.++|++|+.-...+...
T Consensus 40 ~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 107 (142)
T 2fbi_A 40 RVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSM 107 (142)
T ss_dssp HHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHH
Confidence 4556677777799999999999999999999999999999998865 3788999999876655544
No 42
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.80 E-value=0.029 Score=42.37 Aligned_cols=65 Identities=15% Similarity=0.191 Sum_probs=54.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|+.|+..|-|+-.-| -|.++|++|+.-...+...
T Consensus 37 ~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 104 (145)
T 2a61_A 37 DILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKV 104 (145)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHH
Confidence 4566777777899999999999999999999999999999999865 3778999999876655543
No 43
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.80 E-value=0.039 Score=41.39 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=53.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAV 199 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aV 199 (243)
..+.+|..+.-+...+||..+|++..-|-..|+.|+..|-|.-.-| -|.++|++|+.-...+
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 4566777777899999999999999999999999999999998876 5889999999876655
No 44
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.77 E-value=0.033 Score=42.17 Aligned_cols=65 Identities=9% Similarity=0.152 Sum_probs=55.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+...+||..+|++..-+-..|+.|+..|-|+-.-| -|.+||++|+.-...+...
T Consensus 41 ~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~ 108 (142)
T 2bv6_A 41 LVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPEL 108 (142)
T ss_dssp HHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHH
Confidence 4566777777899999999999999999999999999999998876 4788999999877665543
No 45
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.75 E-value=0.039 Score=42.07 Aligned_cols=67 Identities=7% Similarity=0.049 Sum_probs=53.5
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.-+.+.+||..+|++..-|-..|+.|+..|-|+-.-| -|.++|++|+.-...+.....
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHH
Confidence 5667788888999999999999999999999999999999988754 489999999988776666544
No 46
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.73 E-value=0.062 Score=40.58 Aligned_cols=65 Identities=18% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|. +.-+.+.+||..+|++..-|-..|+.|++.|-|+-.-| -|.++|++|+.-...+..+.
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 4556676 78899999999999999999999999999999998765 47788999998766655443
No 47
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.72 E-value=0.078 Score=41.41 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHH
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI 203 (243)
+..+..++.+|....-+...+||..||++..-+-..|+.|+..|.|+- .+|+.||+|+.-...+..+.
T Consensus 39 ~~~~~~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r---~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 39 DDYVELISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEM---IPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE---ETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEE---ecCCceEEChhHHHHHHHHH
Confidence 334555666677667788899999999999999999999999986543 25688999998765554443
No 48
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.71 E-value=0.027 Score=46.24 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC----eE--EEcHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YI--YISQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK----FI--YIS~eEl~aVA~fI~~ 205 (243)
..++.++..+--+.+.+||..+|++..-|..||+.|++.|.|.++ +|.+ |. || .+.+..+..|+.+|..
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~~~~~v~~~l~~ 109 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAK 109 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcchHHHHHHHHhc
Confidence 478888888888999999999999999999999999999999763 5543 54 44 4458889999999998
Q ss_pred cCCcc
Q 026130 206 QGRVS 210 (243)
Q Consensus 206 rGRVS 210 (243)
.--|.
T Consensus 110 ~peV~ 114 (171)
T 2e1c_A 110 YPEIV 114 (171)
T ss_dssp STTEE
T ss_pred CcCeE
Confidence 76654
No 49
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.70 E-value=0.046 Score=41.60 Aligned_cols=68 Identities=9% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
...+.+|..+.-+.+.+||..+|++..-+-..|..|+..|-|+-.-| -|.++|++|+.-...+..+..
T Consensus 34 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 104 (145)
T 3g3z_A 34 FAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTE 104 (145)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHH
Confidence 35566776677799999999999999999999999999999997665 388999999987776655443
No 50
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.67 E-value=0.031 Score=44.11 Aligned_cols=74 Identities=16% Similarity=0.316 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC----eE--EEcHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YI--YISQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK----FI--YIS~eEl~aVA~fI~~ 205 (243)
..++.++..+--+.+.+||..+|++..-|-.+|+.|++.|.|.++ +|.+ |. || .+.+..+..|+.+|..
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~~~~~~~~~l~~ 89 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAK 89 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcccHHHHHHHHhc
Confidence 467788888888999999999999999999999999999999763 5543 54 44 4558889999999998
Q ss_pred cCCcc
Q 026130 206 QGRVS 210 (243)
Q Consensus 206 rGRVS 210 (243)
.--|+
T Consensus 90 ~p~V~ 94 (151)
T 2cyy_A 90 YPEIV 94 (151)
T ss_dssp CTTEE
T ss_pred CCCee
Confidence 76654
No 51
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.67 E-value=0.032 Score=42.64 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=56.8
Q ss_pred HHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.||..+ .-+.+.+||..+|++..-+-.-|+.|+..|-|.=.. |-|.++|++|+.-...+.....
T Consensus 41 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~ 112 (127)
T 2frh_A 41 AVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLS 112 (127)
T ss_dssp HHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 456677777 789999999999999999999999999999998754 4589999999998877776654
No 52
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.62 E-value=0.049 Score=41.01 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=54.6
Q ss_pred HHHHHH-HhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYI-KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yI-K~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+| ..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+...
T Consensus 41 ~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 41 LVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp HHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 455667 6777899999999999999999999999999999988764 4889999999876665544
No 53
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=95.61 E-value=0.072 Score=39.95 Aligned_cols=66 Identities=12% Similarity=0.173 Sum_probs=55.1
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
..+.+|..+.-+...+||..+|++..-+-..|+.|+..|-|+-..| -|.++|++|+.-...+....
T Consensus 38 ~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 38 KVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp HHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 4566677777789999999999999999999999999999998765 37889999998776665544
No 54
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.61 E-value=0.033 Score=44.83 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce---eeeCC--CC----eEEEcH-----HHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG---VMDDR--GK----YIYISQ-----AEMKAVADY 202 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG---ViDDR--GK----FIYIS~-----eEl~aVA~f 202 (243)
...++.+..+--+...+||..+|++..-|..||+.|++.|.|.| ++|.+ |. ||.|+- +.+..|+..
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~~~~~~ 85 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSEV 85 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHHHHHHH
Confidence 46778888888889999999999999999999999999999875 45653 43 566653 458999999
Q ss_pred HHhcCCcc
Q 026130 203 IKRQGRVS 210 (243)
Q Consensus 203 I~~rGRVS 210 (243)
|...--|.
T Consensus 86 l~~~peV~ 93 (162)
T 3i4p_A 86 VSEFPEVV 93 (162)
T ss_dssp HHHCTTEE
T ss_pred HhcCCCEE
Confidence 98876654
No 55
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.60 E-value=0.061 Score=41.13 Aligned_cols=64 Identities=11% Similarity=0.164 Sum_probs=53.2
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~ 201 (243)
..+.+|..+.-+.+.+||..+|++..-|-..|+.|+..|-|+-.-| -|.++|++|+.-...+..
T Consensus 41 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~ 107 (155)
T 1s3j_A 41 FVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE 107 (155)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHH
Confidence 4556677777889999999999999999999999999999987764 478899999986554443
No 56
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.60 E-value=0.04 Score=42.49 Aligned_cols=70 Identities=10% Similarity=0.085 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHHhc
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~~r 206 (243)
...+.+|..+.-+...+||..+|++..-+-..|..|++.|-|+-.-| -|.++|++|+.-...+..+....
T Consensus 44 ~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 116 (149)
T 4hbl_A 44 YLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAI 116 (149)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHH
Confidence 35667787888899999999999999999999999999999997764 48899999999888777665543
No 57
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.59 E-value=0.043 Score=42.45 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=51.2
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|..+.-+...+||..+|++..-|-..|+.|++.|-|.-.- |-|.++|++|+.-...+....
T Consensus 53 ~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 53 RVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp HHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 456677777889999999999999999999999999999998766 458899999998766555443
No 58
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.58 E-value=0.03 Score=42.01 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=48.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
.+..|++--..+.|+.||..|||+.+++-.-|-.|..+|+|.|.||.-..+|...
T Consensus 20 nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 20 NLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 3445888899999999999999999999999999999999999999976666554
No 59
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.56 E-value=0.052 Score=42.54 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC----eEE--EcHHHHHHHHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK----YIY--ISQAEMKAVADYIKR 205 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK----FIY--IS~eEl~aVA~fI~~ 205 (243)
..++.++..+--+...+||..+|++..-|-.+|+.|+..|.|.++ +|.+ |. ||. +.+..+..|+.+|..
T Consensus 8 ~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~ 87 (144)
T 2cfx_A 8 LNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQT 87 (144)
T ss_dssp HHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECcccHHHHHHHHhc
Confidence 367788888888999999999999999999999999999999864 5554 43 333 467778899999987
Q ss_pred cCCc
Q 026130 206 QGRV 209 (243)
Q Consensus 206 rGRV 209 (243)
.--|
T Consensus 88 ~p~V 91 (144)
T 2cfx_A 88 LPNI 91 (144)
T ss_dssp CTTE
T ss_pred Chhh
Confidence 6443
No 60
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.55 E-value=0.063 Score=41.91 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+|..+.-+.+.+||..+|++..-+-..|..|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 57 ~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 57 RLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (161)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHH
Confidence 4566777777889999999999999999999999999999997754 489999999987766665544
No 61
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.55 E-value=0.038 Score=43.37 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=52.5
Q ss_pred HHHHHHHHhcCccchHHHHHHc--CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEF--KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 199 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F--~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aV 199 (243)
..++.+++.+--....+||..+ |++.+-|-.||+.|+..|-|.++ .|| ++.||+.=..-+
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~rg-~Y~LT~~G~~~l 77 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL--ANG-VYVITEEGEAYL 77 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--STT-CEEECHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--CCc-eEEECchHHHHH
Confidence 5678889887889999999999 99999999999999999999986 678 778999875443
No 62
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.54 E-value=0.027 Score=42.91 Aligned_cols=67 Identities=12% Similarity=0.184 Sum_probs=48.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.-+.+.+||..+|++..-+-..|..|+..|-|+-..| -|.++|++|+.-...+.....
T Consensus 41 ~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 41 HVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 5666777778899999999999999999999999999999998776 388999999987666655443
No 63
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.52 E-value=0.027 Score=43.34 Aligned_cols=66 Identities=14% Similarity=0.161 Sum_probs=51.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee-----eeCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV-----MDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV-----iDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+| .+.-+.+.+||..+|++..-|-..|..|++.|-|+-. -|-|.++|++|+.-...+.....
T Consensus 42 ~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~ 112 (151)
T 3kp7_A 42 HVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKA 112 (151)
T ss_dssp HHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHH
Confidence 456677 8888999999999999999999999999999999952 44589999999987766655443
No 64
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.50 E-value=0.034 Score=42.45 Aligned_cols=67 Identities=10% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
...+.+|..+.-+.+.+||..+|++.+-+-..|..|++.|-|+=.-| -|.++|++|+.-...+..+.
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 35667777788899999999999999999999999999999998864 48899999999877766654
No 65
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.43 E-value=0.06 Score=40.27 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=53.8
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~ 201 (243)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|+-.-| -|.++|++|+.-...+..
T Consensus 33 ~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~ 99 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPL 99 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHH
Confidence 4566777788899999999999999999999999999999998765 377889999986555444
No 66
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.42 E-value=0.041 Score=42.30 Aligned_cols=61 Identities=8% Similarity=0.100 Sum_probs=49.5
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKA 198 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~a 198 (243)
..+.+|..+.-+...+||..+|++..-+-..|+.|++.|-|.-..| -|.++|++|+.-...
T Consensus 51 ~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 114 (153)
T 2pex_A 51 LVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRAL 114 (153)
T ss_dssp HHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHG
T ss_pred HHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHH
Confidence 4566777777899999999999999999999999999999998764 488899999976543
No 67
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.40 E-value=0.075 Score=41.97 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=54.5
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~f 202 (243)
.++.+|..+.-+.+.+||..+|++..-|-..|+.|++.|-|+-..| -|.++|++|+.-...+..+
T Consensus 49 ~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~ 116 (168)
T 2nyx_A 49 RTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQV 116 (168)
T ss_dssp HHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHH
Confidence 4566676677899999999999999999999999999999998765 4788999999876655543
No 68
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.39 E-value=0.064 Score=41.27 Aligned_cols=66 Identities=9% Similarity=0.170 Sum_probs=53.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI 203 (243)
..+.+|..+.-+.+.+||..+|++..-|-..|+.|++.|-|+-.. |-|.++|++|+.-...+..+.
T Consensus 47 ~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 47 RVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp HHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 456677777789999999999999999999999999999998765 447899999998766665544
No 69
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.39 E-value=0.067 Score=40.63 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=56.0
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.- .+.+||..+|++..-+-..|+.|++.|-|+-.-|. |.++|++|+.-...+.....
T Consensus 41 ~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 109 (144)
T 3f3x_A 41 SILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANE 109 (144)
T ss_dssp HHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHH
Confidence 56667777777 99999999999999999999999999999988764 67799999987776665544
No 70
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.37 E-value=0.034 Score=51.38 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
....++.|++--+.|.|+.||..||++...+-.-|-.|..+|+|.|-||--.+.|++...
T Consensus 334 r~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 334 RRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp HHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred HHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 467788899999999999999999999999999999999999999999998888888643
No 71
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.35 E-value=0.078 Score=40.60 Aligned_cols=66 Identities=11% Similarity=0.107 Sum_probs=54.0
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce--eee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG--VMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG--ViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|..+.-+...+||..+|++..-|-..|..|+..|-|+- .-| -|.++|++|+.-...+..+.
T Consensus 45 ~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 45 AMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp HHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 4566777778899999999999999999999999999999987 544 47789999998766655544
No 72
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.33 E-value=0.021 Score=43.78 Aligned_cols=67 Identities=24% Similarity=0.334 Sum_probs=46.7
Q ss_pred HHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+ .-+.+.+||..+|++..-+-..|..|++.|-|+-.-| -|.++|++|+.-...+.....
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 116 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 116 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHH
Confidence 456677766 6889999999999999999999999999999998874 489999999987766655443
No 73
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.31 E-value=0.034 Score=41.48 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=43.2
Q ss_pred HhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEE---EcHHHHHHHH
Q 026130 144 KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIY---ISQAEMKAVA 200 (243)
Q Consensus 144 K~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIY---IS~eEl~aVA 200 (243)
....-+...+||..||++..-|-..|+.|...|-|+..- ..+|.|+| +++..+..+.
T Consensus 29 ~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~ 91 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEIL 91 (110)
T ss_dssp HHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC---
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHH
Confidence 344247889999999999999999999999999998652 45788888 7777665543
No 74
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=95.29 E-value=0.062 Score=41.65 Aligned_cols=81 Identities=12% Similarity=0.140 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH----HHHhcCCc
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD----YIKRQGRV 209 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~----fI~~rGRV 209 (243)
.+.+..+..+.. --..+.|||..||+....+.+-++.|...|.|+-|-+| +|++++-+..++. |+...|.+
T Consensus 7 ~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~----~~~~~~~~~~~~~~l~~~~~~~~~i 81 (121)
T 2pjp_A 7 AIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD----RYYRNDRIVEFANMIRDLDQECGST 81 (121)
T ss_dssp HHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT----EEEEHHHHHHHHHHHHHHHHHHSSE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC----ceECHHHHHHHHHHHHHHHHHCCCc
Confidence 344555555533 34467799999999999999999999999999999876 7888877766554 55558999
Q ss_pred cHHHHHhhcc
Q 026130 210 SISHLASKSN 219 (243)
Q Consensus 210 Si~eLa~~sN 219 (243)
|++++-...|
T Consensus 82 t~ae~Rd~lg 91 (121)
T 2pjp_A 82 CAADFRDRLG 91 (121)
T ss_dssp EHHHHHHHHT
T ss_pred cHHHHHHHHC
Confidence 9998887765
No 75
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.28 E-value=0.039 Score=41.91 Aligned_cols=61 Identities=10% Similarity=0.184 Sum_probs=51.8
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKA 198 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~a 198 (243)
.++.+|..+.-+...+||..+|++..-+-..|..|++.|-|.-..| -|.++|++|+.-...
T Consensus 44 ~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~ 107 (147)
T 1z91_A 44 LALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALL 107 (147)
T ss_dssp HHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSG
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHH
Confidence 4566677777899999999999999999999999999999987765 389999999975443
No 76
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=95.25 E-value=0.038 Score=42.32 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=51.3
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
..+.++... -+.+.+||..+|++..-+-..|+.|+..|-|...-+.|+.|.++|+..+..+...
T Consensus 25 ~IL~~L~~~-~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~ 88 (118)
T 2jsc_A 25 RILVALLDG-VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGE 88 (118)
T ss_dssp HHHHHHHTT-CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHH
Confidence 345556543 4677899999999999999999999999999988887888888998766555443
No 77
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.23 E-value=0.085 Score=38.38 Aligned_cols=66 Identities=11% Similarity=0.062 Sum_probs=53.1
Q ss_pred HHHHHHhcC-ccchHHHHHHcCCChHH-HHHHHHHHHhcCCcce-eeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 139 FVEYIKKHK-CIPLEDLAAEFKLRTQE-CINRITSLENMGRLSG-VMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 139 Fi~yIK~~K-vV~LEdLA~~F~lrtqd-~I~RIq~Le~~g~LtG-ViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
++.+|..+. -+.+.+||..+|++..- +-..|+.|++.|-|.- --|-|.++|++|+.-...+..+..
T Consensus 20 ~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~ 88 (95)
T 2pg4_A 20 TLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEK 88 (95)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHH
Confidence 445666666 79999999999999999 8999999999999981 123488999999988776665544
No 78
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.22 E-value=0.031 Score=52.34 Aligned_cols=59 Identities=10% Similarity=0.231 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
....+.|++--..|.|.+||..||++++++-.-|-.|..+|.|.|.||--...|+++..
T Consensus 304 ~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~ 362 (394)
T 3txn_A 304 EQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEE 362 (394)
T ss_dssp HHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC
T ss_pred HHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCC
Confidence 34455577888999999999999999999999999999999999999999999999765
No 79
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.19 E-value=0.068 Score=40.74 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=52.0
Q ss_pred HHHHHhcCccc--hHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH------HHHHHHHHHH
Q 026130 140 VEYIKKHKCIP--LEDLAAEF-KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA------EMKAVADYIK 204 (243)
Q Consensus 140 i~yIK~~KvV~--LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e------El~aVA~fI~ 204 (243)
+.++. ..-.. ..+|+..+ |++..-+-.+|+.|+..|-|+-..+ |..++++|+. -+.++..|+.
T Consensus 33 L~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~ 104 (111)
T 3df8_A 33 ISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYIS 104 (111)
T ss_dssp HHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHH
Confidence 44454 33444 89999999 9999999999999999999999999 9999999997 5666666654
No 80
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.17 E-value=0.085 Score=39.62 Aligned_cols=65 Identities=15% Similarity=0.273 Sum_probs=51.7
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.+.+|.. .-..+.+||..+|++..-+-..|+.|+..|.|.-.-|.|+.|++++...+..++..+.
T Consensus 37 il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~ 101 (119)
T 2lkp_A 37 ILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAI 101 (119)
T ss_dssp HHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHH
Confidence 4445555 5678999999999999999999999999999987777788888888777666555443
No 81
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=95.16 E-value=0.081 Score=41.02 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=53.4
Q ss_pred HHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 140 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 140 i~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
+.++.. .-..+.+||..+|++..-+-..|+.|+..|.|...-+.|+.|.+++++.+..++..+.
T Consensus 52 L~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~ 115 (122)
T 1r1t_A 52 LSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNAL 115 (122)
T ss_dssp HHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 445543 4567889999999999999999999999999998888888888899998877776654
No 82
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=95.16 E-value=0.099 Score=39.21 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=45.9
Q ss_pred HHHHHHhcCccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHH
Q 026130 139 FVEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQA 194 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~e 194 (243)
.+.++. .--+.+.+||..+ |++..-+-.+|+.|++.|-|+...|. |..++++|+.
T Consensus 19 IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 19 ILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 344454 4557889999999 99999999999999999999998874 5678889984
No 83
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.14 E-value=0.078 Score=42.09 Aligned_cols=67 Identities=18% Similarity=0.209 Sum_probs=52.3
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|.. ..-+.+.+||..+|++..-|-..|..|++.|-|+-.- |-|.++|++|+.-...+..+..
T Consensus 57 ~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 127 (166)
T 3deu_A 57 VTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEE 127 (166)
T ss_dssp HHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 45566766 5668999999999999999999999999999999887 4588999999987766655443
No 84
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.05 E-value=0.045 Score=42.24 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=51.6
Q ss_pred HHHHHH-HhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYI-KKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yI-K~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+| ..+.-+.+.+||..+|++..-+-..|+.|++.|-|+-.- |-|.++|++|+.-...+..+.
T Consensus 51 ~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 51 DAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp HHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 456677 456789999999999999999999999999999998765 448899999998776655443
No 85
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.04 E-value=0.087 Score=43.04 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee---eeCC--CC---eEEE--cHH--------HHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV---MDDR--GK---YIYI--SQA--------EMKA 198 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV---iDDR--GK---FIYI--S~e--------El~a 198 (243)
...+..+..+--+.+.+||..+|++..-|..+|+.|++.|.|.++ +|.+ |. ||.| ++. .+..
T Consensus 20 ~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~ 99 (171)
T 2ia0_A 20 RNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISY 99 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHH
Confidence 367888888888999999999999999999999999999999764 4443 42 5544 444 7899
Q ss_pred HHHHHHhcCCcc
Q 026130 199 VADYIKRQGRVS 210 (243)
Q Consensus 199 VA~fI~~rGRVS 210 (243)
|+..|...-.|.
T Consensus 100 ~~~~l~~~peV~ 111 (171)
T 2ia0_A 100 ISSTLSALPGVL 111 (171)
T ss_dssp HHHHHHTSTTEE
T ss_pred HHHHHHCCCCeE
Confidence 999998876664
No 86
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=94.92 E-value=0.12 Score=41.98 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=54.7
Q ss_pred HHHHHHHh--cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~--~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~fI 203 (243)
..+.+|.. ..-+.+.+||..+|++.+-+-..|..|+..|-|+-..|. |.++|++|+.-...+..+.
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45566765 457899999999999999999999999999999988763 7899999998766555443
No 87
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=94.91 E-value=0.04 Score=40.22 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=45.8
Q ss_pred HHHHHHHHhcC---ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 137 ADFVEYIKKHK---CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 137 ~~Fi~yIK~~K---vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
...+.+++.+- -+...+||..+|++...|-.+|..|+..|.|.++-+..|.|.
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 56777888887 899999999999999998899999999999999876566653
No 88
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=94.90 E-value=0.083 Score=40.50 Aligned_cols=67 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHHHhc-CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~-KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
..+.+|..+ .-+.+.+||..+|++..-+-..|..|++.|-|+-.-| -|.++|++|+.-...+..+..
T Consensus 43 ~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 113 (150)
T 3fm5_A 43 SVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp HHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHH
Confidence 344566544 3689999999999999999999999999999987654 488999999987776665544
No 89
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=94.79 E-value=0.05 Score=39.18 Aligned_cols=43 Identities=19% Similarity=0.485 Sum_probs=39.1
Q ss_pred HHHHHHHHhcC-ccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 137 ADFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 137 ~~Fi~yIK~~K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
...++||+.+. |+.+.+.|..||++.++|.+-+..|+.-|-|.
T Consensus 13 ~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 47789999876 88899999999999999999999999999763
No 90
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.77 E-value=0.24 Score=35.36 Aligned_cols=64 Identities=23% Similarity=0.318 Sum_probs=47.4
Q ss_pred HHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CC---CeEEEcHHHHHHHHHHHH
Q 026130 141 EYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RG---KYIYISQAEMKAVADYIK 204 (243)
Q Consensus 141 ~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RG---KFIYIS~eEl~aVA~fI~ 204 (243)
..+..+.-+.+.+||..||++..-|-..|+.|+..|-|...-+. +| .++.+++.-+..+..++.
T Consensus 29 ~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~ 98 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLL 98 (109)
T ss_dssp HHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHH
Confidence 33444777899999999999999999999999999999987653 23 356688855555555443
No 91
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.45 E-value=0.16 Score=42.21 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=58.8
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
..+.+|..+.-+...+||..+|++..-+-..|..|++.|-|+-..| -|-++|++|+.-...+..+......+
T Consensus 52 ~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~ 126 (207)
T 2fxa_A 52 HILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEFDPT 126 (207)
T ss_dssp HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHHHHH
Confidence 3455666667799999999999999999999999999999998876 37889999999988888777665444
No 92
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=94.34 E-value=0.25 Score=37.59 Aligned_cols=64 Identities=13% Similarity=0.265 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
.|..|+.....+.-+.+.+||..+|++..-|-..|+.|+..|-|.-.- +.|++|+.-...+...
T Consensus 18 ~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~----~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 18 YLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE----DGVWITNNGTRSINYL 81 (139)
T ss_dssp HHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC----CeEEEChhHHHHHHHH
Confidence 344444444556788999999999999999999999999998776532 6799999766544333
No 93
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=94.34 E-value=0.23 Score=37.02 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=45.6
Q ss_pred HHHHHhcCccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHH
Q 026130 140 VEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAE 195 (243)
Q Consensus 140 i~yIK~~KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eE 195 (243)
+.++. ..-....+||..+ |++..-+-..|+.|++.|-|+...|. |..++++|+.-
T Consensus 31 L~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 31 IFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp HHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 34454 5567889999999 59999999999999999999998874 56788999963
No 94
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=94.24 E-value=0.12 Score=38.32 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcC---ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 135 LLADFVEYIKKHK---CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 135 lL~~Fi~yIK~~K---vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
.-...+++|+.+- -+...+||..+|++...|-.+|..|+.+|.|.=+-...|.|.-.++.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 3456778888888 89999999999999999999999999999996443344666544443
No 95
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.20 E-value=0.12 Score=40.45 Aligned_cols=67 Identities=13% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+ .-+.+.+||..+|++..-|-..|..|+..|-|+-.-|. |.++|++|+.-...+..+..
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 345566663 58999999999999999999999999999999988763 78899999987766665544
No 96
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.091 Score=45.02 Aligned_cols=73 Identities=14% Similarity=0.376 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH-----HHHHHHHHHHhcCCc
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA-----EMKAVADYIKRQGRV 209 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e-----El~aVA~fI~~rGRV 209 (243)
..+..+++--..|.|..||..||++.+++-..|-.|..+|.|.|.||.-...|.+.+. -+..+...|.+-|.|
T Consensus 345 ~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~~~~l~~~ 422 (434)
T 4b4t_Q 345 SNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALELVGQLNKV 422 (434)
T ss_dssp HHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC----------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHHHHHHHHH
Confidence 3455567777889999999999999999999999999999999999986666666432 244455555554443
No 97
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=93.99 E-value=0.21 Score=41.03 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=51.9
Q ss_pred HHHHHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCC-cce----ee-eCCC-C--eEEE-------cHHHHH
Q 026130 135 LLADFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGR-LSG----VM-DDRG-K--YIYI-------SQAEMK 197 (243)
Q Consensus 135 lL~~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~-LtG----Vi-DDRG-K--FIYI-------S~eEl~ 197 (243)
.+...+.++.. .+.+.+.+||..||++..-|..+|+.|...|. |.| .. .... . .++. |++|+.
T Consensus 22 R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~~~~~l~~~~~~~~~~~~~~~e~~ 101 (187)
T 1j5y_A 22 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGKSGVSRLVAVKHAPEEIKEELL 101 (187)
T ss_dssp HHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCTTTCSEEEEEEEECCGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEECCEEEECCcccccceeeeecCccccCHHHHH
Confidence 45678888886 46799999999999999999999999999998 763 32 2211 1 1222 777877
Q ss_pred HHHHHHHh
Q 026130 198 AVADYIKR 205 (243)
Q Consensus 198 aVA~fI~~ 205 (243)
++..++..
T Consensus 102 ~l~~~~~~ 109 (187)
T 1j5y_A 102 CVVRNGGR 109 (187)
T ss_dssp HHHHTTCE
T ss_pred HHHHhCCC
Confidence 77655544
No 98
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=93.83 E-value=0.15 Score=37.71 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=52.3
Q ss_pred HHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 142 YIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 142 yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
++..+.-+.+.+||..+|++..-+-..|+.|... -|..--+.|..|.+++++.+..+..++.
T Consensus 35 ~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred HHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 4444556788999999999999999999999999 8888777777788889999999888874
No 99
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=93.75 E-value=0.28 Score=38.58 Aligned_cols=54 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHhcCccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHH
Q 026130 141 EYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAE 195 (243)
Q Consensus 141 ~yIK~~KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eE 195 (243)
.++. +.-....+||..+ |++..-+-.+|+.|++.|-|+-..|. |..++++|+.-
T Consensus 42 ~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 99 (131)
T 1yyv_A 42 VALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLG 99 (131)
T ss_dssp HHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHH
T ss_pred HHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccH
Confidence 3444 4557788999999 79999999999999999999998874 67799999964
No 100
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.68 E-value=0.37 Score=38.31 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=45.6
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee--CCCCeEEEcHHH
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--DRGKYIYISQAE 195 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD--DRGKFIYIS~eE 195 (243)
.+.++. .....+.+||..+|++..-+-.+|+.|++.|-|+...+ |+..++++|+.-
T Consensus 29 IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G 86 (146)
T 2f2e_A 29 IVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKG 86 (146)
T ss_dssp HHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHH
T ss_pred HHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchH
Confidence 344554 45678999999999999999999999999999999987 454566689853
No 101
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=93.65 E-value=0.39 Score=41.71 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHhcCcc--chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh---c
Q 026130 132 DRDLLADFVEYIKKHKCI--PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR---Q 206 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~KvV--~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~---r 206 (243)
.+.+++.....+....+. .+.||+..+|+....+.+-+..|...|.|+-|-+| +|++++-+..++..|.. .
T Consensus 139 ~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~----~~~~~~~~~~~~~~l~~~~~~ 214 (258)
T 1lva_A 139 QKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDE----FYWHRQALGEAREVIKNLAST 214 (258)
T ss_dssp HHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS----BEEEHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC----eEEcHHHHHHHHHHHHHHHhc
Confidence 355677888877777753 58899999999999999999999999999999876 89999999888776665 8
Q ss_pred CCccHHHHHhhcc
Q 026130 207 GRVSISHLASKSN 219 (243)
Q Consensus 207 GRVSi~eLa~~sN 219 (243)
|.||++++-...|
T Consensus 215 ~~it~a~~Rd~lg 227 (258)
T 1lva_A 215 GPFGLAEARDALG 227 (258)
T ss_dssp SCBCHHHHHHHHT
T ss_pred CCcCHHHHHHHhC
Confidence 9999988766554
No 102
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=93.20 E-value=0.43 Score=35.92 Aligned_cols=56 Identities=7% Similarity=0.051 Sum_probs=47.1
Q ss_pred HHHHHhcCccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHH
Q 026130 140 VEYIKKHKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEM 196 (243)
Q Consensus 140 i~yIK~~KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl 196 (243)
+.+|.. .-+...+||..+ |++..-+-..|+.|+..|-|....|. |.+++++|+.-.
T Consensus 28 L~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 28 MDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp HHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred HHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 444544 557899999999 99999999999999999999998873 678899999754
No 103
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.14 E-value=0.42 Score=37.56 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=52.6
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~f 202 (243)
.++.+|-. ...+...+||..+|++..-+-.-|..|++.|-|+=..|. |.++|++|+.-...+...
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~ 103 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQV 103 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHH
Confidence 34556644 466777999999999999999999999999999977763 789999999876655443
No 104
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=93.10 E-value=0.14 Score=38.71 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=44.4
Q ss_pred cchhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee
Q 026130 131 GDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 181 (243)
Q Consensus 131 ~~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV 181 (243)
...+....++.|++.+= ...-+||..+|++.+.|-.+|..|+.+|.|.-+
T Consensus 14 ~~~~~~~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp CSHHHHHHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred chHHHHHHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 35677889999999766 999999999999999999999999999998764
No 105
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.05 E-value=0.5 Score=36.79 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHH--hcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHH
Q 026130 140 VEYIK--KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADY 202 (243)
Q Consensus 140 i~yIK--~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~f 202 (243)
+.+|. .+.-+...+||..++++..-+-.-|..|++.|-|+=.-|. |.++|++|+.-...+...
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 44443 3345889999999999999999999999999999988763 899999999887665544
No 106
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.94 E-value=0.19 Score=40.34 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=47.8
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce--eeeCCCC---eEEEcHHHHHHHHHHHHhc
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG--VMDDRGK---YIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG--ViDDRGK---FIYIS~eEl~aVA~fI~~r 206 (243)
......++||..+|++..+|.+.|+.|+..|-|+= ..|..|+ ++++|| =+.++..++...
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p-L~ekL~~~~~~~ 113 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP-LWGKLYEYIQLA 113 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH-HHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH-HHHHHHHHHHHH
Confidence 46689999999999999999999999999999885 5576675 555555 367777777554
No 107
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=92.94 E-value=0.23 Score=37.01 Aligned_cols=58 Identities=12% Similarity=0.202 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChH-HHHHHHHHHHhcCCcceeeeCCCCeEE-EcH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQ-ECINRITSLENMGRLSGVMDDRGKYIY-ISQ 193 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtq-d~I~RIq~Le~~g~LtGViDDRGKFIY-IS~ 193 (243)
+.-...+.|++.+-=+..-+||..+|+++. .|-.-+..|+.+|.|.-. +.|.-+| +|+
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP~w~LT~ 70 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPPIWHLTD 70 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSCEEEECH
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCCCeEeCH
Confidence 445788899999999999999999999999 999999999999999732 3444443 443
No 108
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=92.69 E-value=0.23 Score=37.79 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=42.3
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee-CCCCeEE-EcHHHHHHHH
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD-DRGKYIY-ISQAEMKAVA 200 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD-DRGKFIY-IS~eEl~aVA 200 (243)
++....+||..||++..-|-..|+.|+.+|.|.-+-. -+|-||. ++++++..+.
T Consensus 42 ~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 4458899999999999999999999999999876543 3777775 4556555544
No 109
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.58 E-value=0.12 Score=41.26 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHHHhcCc---cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKC---IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 138 ~Fi~yIK~~Kv---V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
.++.+|..+.- +.+.+||..+|++..-|-..|+.|++.|-|+-..| -|.++|++|+.-...+....
T Consensus 73 ~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 73 DLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp HHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 44556666554 89999999999999999999999999999998754 47889999998776665543
No 110
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=92.42 E-value=0.38 Score=37.08 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=48.4
Q ss_pred HHHHHHHhcCc--cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee--C-CC-CeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKC--IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--D-RG-KYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~Kv--V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD--D-RG-KFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|..+.- +.+.+||..+|++..-|-..|+.|+..|-|....+ | +| .|+|.+. ....+...|.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~-~~~~~~~~i~ 101 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIY-SKNQIRNIIQ 101 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC-CHHHHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecC-CHHHHHHHHH
Confidence 45566666655 89999999999999999999999999999987543 4 44 4666542 2444444444
No 111
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=91.89 E-value=0.31 Score=35.49 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
..+.+| +.-+.+.+||..||++..-+-..|+.|+..|.|.-.- | |.++|+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~---g-~y~l~~~ 85 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---E-RWVVTDA 85 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---T-EEEECTT
T ss_pred HHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC---C-EEEECCC
Confidence 455666 4557899999999999999999999999999998643 6 7778774
No 112
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=91.83 E-value=1.1 Score=34.07 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCcc------chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH
Q 026130 134 DLLADFVEYIKKHKCI------PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 200 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV------~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA 200 (243)
.....+.+.|....+- ...+||..||++..-|..-++.|..+|.|.-+ +|+-.||++-....+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~---~~~G~~V~~~~~~~~~ 82 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR---RGLGMLVKAGARQRLL 82 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe---cCCeEEEeCCchHHHH
Confidence 3455666677665543 67899999999999999999999999987543 6677777775554443
No 113
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=91.77 E-value=0.66 Score=34.60 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=38.5
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEc
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYIS 192 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS 192 (243)
+.-+.+.+||..+|++..-|-..|+.|+..|-|+...|. |..||+++
T Consensus 39 ~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~ 88 (152)
T 1ku9_A 39 DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVD 88 (152)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECC
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeecc
Confidence 356899999999999999999999999999999998643 33444443
No 114
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=91.48 E-value=0.25 Score=48.18 Aligned_cols=83 Identities=11% Similarity=0.098 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCC-cceeeeCCCCeEEEcHHHH-------------------
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGR-LSGVMDDRGKYIYISQAEM------------------- 196 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~-LtGViDDRGKFIYIS~eEl------------------- 196 (243)
...+.||+.+.-+...+||..||++...+-..|+.|...|. -.|+|.-.|...+|++.=.
T Consensus 433 ~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~ 512 (583)
T 3lmm_A 433 AIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLST 512 (583)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC------------
T ss_pred HHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccccccC
Confidence 46788999999999999999999999999999999999331 1344444466677777511
Q ss_pred ------HHHHHHHHhcCCccHHHHHhhcc
Q 026130 197 ------KAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 197 ------~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
..|-.||+..|.||.++++..|+
T Consensus 513 ~~~~~~~~I~~~l~~~g~it~~di~~l~~ 541 (583)
T 3lmm_A 513 DQAELTNAAMLWLSEVGDLATSDLMAMCG 541 (583)
T ss_dssp -----------------------------
T ss_pred ChhHHHHHHHHHHHHcCCcCHHHHHHHHC
Confidence 23668999999999999999886
No 115
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.20 E-value=0.3 Score=45.41 Aligned_cols=83 Identities=12% Similarity=0.146 Sum_probs=46.5
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHH--HHHHHHHHHhcCCccHHHHHh
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE--MKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eE--l~aVA~fI~~rGRVSi~eLa~ 216 (243)
++.+++--..|.|..||..|||++++|-.-|-.|..+|+|.|.||--...|+..... -+.+..|...-+ ++-+++.
T Consensus 350 l~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~--~l~~~v~ 427 (445)
T 4b4t_P 350 LRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVD--ELLEHIE 427 (445)
T ss_dssp HHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC---------------------------
T ss_pred HHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHH--HHHHHHH
Confidence 334566778999999999999999999999999999999999999855577765321 122333332111 2345566
Q ss_pred hcccccc
Q 026130 217 KSNQFID 223 (243)
Q Consensus 217 ~sN~lI~ 223 (243)
.+|.||.
T Consensus 428 k~~~lI~ 434 (445)
T 4b4t_P 428 TIGHLIT 434 (445)
T ss_dssp -------
T ss_pred HHHHHHH
Confidence 6666665
No 116
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=91.02 E-value=0.85 Score=34.37 Aligned_cols=58 Identities=17% Similarity=0.271 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHhc-CccchHHHHHHcCC-ChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 132 DRDLLADFVEYIKKH-KCIPLEDLAAEFKL-RTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~-KvV~LEdLA~~F~l-rtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
...+=+.|++.|+.+ +=|.=++|..+|.- ..++.+.-|+.|+.+|+|. ++-.-|++||
T Consensus 12 ~~~ie~~IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkie-l~K~~~~liY 71 (81)
T 2dk8_A 12 PVEIENRIIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLD-LLRSNTGLLY 71 (81)
T ss_dssp HHHHHHHHHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEE-EEECSSSEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeE-EEecCCeEEE
Confidence 344556788888765 56777889999976 9999999999999999999 8888899999
No 117
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=90.99 E-value=0.54 Score=40.96 Aligned_cols=59 Identities=15% Similarity=0.308 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 197 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~ 197 (243)
...+.+|..+.-+.+.+||..+|++..-|-..|+.|++.|-|... .|++.+++|+.=..
T Consensus 155 ~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 155 MKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHH
Confidence 345667766677899999999999999999999999999999986 67889999987554
No 118
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=90.97 E-value=0.68 Score=38.92 Aligned_cols=68 Identities=16% Similarity=0.152 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
++|.........+.-+...+||..+|++..-+-..|+.|++.|-|+=.- .+.|++|+.-.......+.
T Consensus 6 dYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~G~~~~~~~~~ 73 (214)
T 3hrs_A 6 DYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDLGLKLVSDLYR 73 (214)
T ss_dssp HHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHHHHHHHHHHHH
Confidence 4455554444556788999999999999999999999999999886543 3789999998776555444
No 119
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=90.33 E-value=0.54 Score=41.98 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
.....+.++..+..+...+||..||++..-+-..|+.|...|.+.
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 456788888889999999999999999999999999999988765
No 120
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=90.28 E-value=1 Score=39.21 Aligned_cols=65 Identities=15% Similarity=0.277 Sum_probs=54.7
Q ss_pred HHHHHHhcC--ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 139 FVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 139 Fi~yIK~~K--vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
++.+|..+. -+...+||..++++..-+-..|..|++.|-|+=.-| -|..+|++|+.-...+....
T Consensus 163 vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~ 232 (250)
T 1p4x_A 163 ILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLL 232 (250)
T ss_dssp HHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHH
Confidence 355665554 589999999999999999999999999999999886 38999999999877766543
No 121
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=90.00 E-value=1.3 Score=36.96 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=50.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCC--------CCeEE-EcHH----HHHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--------GKYIY-ISQA----EMKAVAD 201 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDR--------GKFIY-IS~e----El~aVA~ 201 (243)
..+.++. +.-+...+||..+|++..-|-.+|+.|+..|.|.+.- +-+ .-++| |+.. .+..+..
T Consensus 24 ~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~ 102 (192)
T 1uly_A 24 KILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIAR 102 (192)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEECSCSSCHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEEecCCchhHHHHHHH
Confidence 4566776 4568999999999999999999999999999999983 333 12443 6553 4566666
Q ss_pred HHHh
Q 026130 202 YIKR 205 (243)
Q Consensus 202 fI~~ 205 (243)
.+..
T Consensus 103 ~~~~ 106 (192)
T 1uly_A 103 SRLK 106 (192)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6665
No 122
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=89.86 E-value=0.69 Score=34.02 Aligned_cols=76 Identities=11% Similarity=0.226 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCC-cc
Q 026130 134 DLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGR-VS 210 (243)
Q Consensus 134 ~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGR-VS 210 (243)
.++...++||..+ .-+.|++||..+|++..-+-..++....... .=||..-=|......|..-+. +|
T Consensus 2 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~----------~~~~~~~Rl~~A~~lL~~~~~~~s 71 (108)
T 3mn2_A 2 NAVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSP----------MAFAKRVRLQHAHNLLSDGATPTT 71 (108)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCH----------HHHHHHHHHHHHHHHHHSSSSCCC
T ss_pred HHHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCH----------HHHHHHHHHHHHHHHHHcCCCCCC
Confidence 4678889999775 4589999999999998777766665422110 114455556666666766554 78
Q ss_pred HHHHHhhcc
Q 026130 211 ISHLASKSN 219 (243)
Q Consensus 211 i~eLa~~sN 219 (243)
|+++|..|.
T Consensus 72 i~~IA~~~G 80 (108)
T 3mn2_A 72 VTAAALSCG 80 (108)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887764
No 123
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=89.76 E-value=0.7 Score=32.56 Aligned_cols=54 Identities=13% Similarity=0.292 Sum_probs=45.8
Q ss_pred HHHHHHHHhc--CccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 137 ADFVEYIKKH--KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 137 ~~Fi~yIK~~--KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
...+++|..+ .-+.+.+|+..| +++..-|-.-|+.|+..|.|.-+-.+.|...|
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 3566777665 579999999999 99999888999999999999998877777666
No 124
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=89.35 E-value=0.93 Score=33.62 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=47.8
Q ss_pred HHHHHHHhcCccchHHHHHHcC----CChHHHHHHHHHHHhcCCcceeeeCCC-CeEEEcHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRG-KYIYISQAEMK 197 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~----lrtqd~I~RIq~Le~~g~LtGViDDRG-KFIYIS~eEl~ 197 (243)
.++.+|..+.-+...+||..++ ++..-+-.-|+.|+..|-|.-.-|||- .||++|+..-.
T Consensus 14 ~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~ 78 (123)
T 1okr_A 14 EVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDI 78 (123)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHH
Confidence 4556676677899999999999 778889999999999999998888543 34667776543
No 125
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=89.30 E-value=0.83 Score=33.68 Aligned_cols=76 Identities=14% Similarity=0.237 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCcc
Q 026130 133 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 210 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVS 210 (243)
..++..+++||..+ .-+.|++||..+|++..-+-..++....... .=||..-=|...+..|. .+..|
T Consensus 4 ~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~----------~~~~~~~Rl~~A~~lL~-~~~~s 72 (108)
T 3oou_A 4 SPIIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF----------TDYLNRYRVNYAKEELL-QTKDN 72 (108)
T ss_dssp CCHHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHH-HCCCC
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHH-cCCCC
Confidence 45788999999875 4678999999999998888777776532211 11344445666666665 46678
Q ss_pred HHHHHhhcc
Q 026130 211 ISHLASKSN 219 (243)
Q Consensus 211 i~eLa~~sN 219 (243)
|+++|..|.
T Consensus 73 i~~IA~~~G 81 (108)
T 3oou_A 73 LTIIAGKSG 81 (108)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999888764
No 126
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=89.29 E-value=1.2 Score=29.56 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
.-++.++..+..+..++|+..| +++..-+-.-|+ ..|.+ .|..+.|.+.|
T Consensus 8 ~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 8 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 3445567788899999999999 997665554455 66888 99888888887
No 127
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=89.26 E-value=0.5 Score=37.58 Aligned_cols=60 Identities=12% Similarity=0.202 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+.++..+..-|..-|+|..--||..|+++-.-+-.-|++|+..|.|.-|.-.++..||.-
T Consensus 44 k~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 103 (108)
T 3u5c_Z 44 QEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103 (108)
T ss_dssp THHHHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEEC
T ss_pred HHHHHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 556888999999999999999999999999999999999999999999999999999973
No 128
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=88.78 E-value=0.49 Score=39.36 Aligned_cols=61 Identities=8% Similarity=0.232 Sum_probs=56.6
Q ss_pred chhHHHHHHHHHHhc-CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 132 DRDLLADFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~-KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
.+.++..+..-|..- |+|..--||..|+++-.-+-.-|++|+..|.|--|+-.++..||.-
T Consensus 46 Dk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 46 EKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp CHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 356678888889999 9999999999999999999999999999999999999999999974
No 129
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=88.76 E-value=0.45 Score=37.80 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+.+++.+..-|..-|+|..--||..|+++-.-+-.-|++|+..|.|.-|.-.++..||.-
T Consensus 45 k~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 104 (108)
T 3iz6_V 45 KATYDKLLSEVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYTR 104 (108)
T ss_dssp SHHHHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEEE
T ss_pred HHHHHHHHHHccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 445778888889999999999999999999999999999999999999998999999963
No 130
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=88.74 E-value=3.9 Score=31.48 Aligned_cols=57 Identities=7% Similarity=0.157 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhcCc------cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 133 RDLLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~Kv------V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
......+.++|....+ ....+||..||++..-|..-++.|..+|.|.-. --+|-||-
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V~ 78 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK-RGMGSFVT 78 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe-cCCEEEEe
Confidence 3345566666765443 358999999999999999999999999987543 23454543
No 131
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=88.59 E-value=0.6 Score=34.87 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee
Q 026130 131 GDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM 182 (243)
Q Consensus 131 ~~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi 182 (243)
+..+++-.||.++....-+..-+||..||++.+.|=.-|-.|+..|.|..+-
T Consensus 12 ~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~ 63 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVP 63 (75)
T ss_dssp HHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCC
Confidence 3567788999999999999999999999999999777899999999997763
No 132
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=88.53 E-value=0.42 Score=37.82 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=43.0
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI 203 (243)
+...+||...|++.+-+-.-++.|...|.|. + ++|+++-+.++-|..+|.++
T Consensus 164 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~-~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 164 IRHHELAALAGTSRETVSRVLHALAEEGVVR--L-GPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHTTC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-cCCEEEEeCHHHHHHHhhcc
Confidence 5689999999999888888899999999885 2 46776667788888888764
No 133
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=88.46 E-value=1.8 Score=34.37 Aligned_cols=60 Identities=5% Similarity=0.003 Sum_probs=49.9
Q ss_pred cCccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHH------HHHHHHHHHHh
Q 026130 146 HKCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQA------EMKAVADYIKR 205 (243)
Q Consensus 146 ~KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~e------El~aVA~fI~~ 205 (243)
..-....+|+..+ |++..-+-.+|..|+..|-|+=..+. |..++++|+. -+.+++.|...
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~ 106 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGES 106 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHH
Confidence 5667889999999 99999999999999999999988764 4667789997 56666666544
No 134
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.27 E-value=0.6 Score=42.84 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=43.8
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhcccccc
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-SISHLASKSNQFID 223 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV-Si~eLa~~sN~lI~ 223 (243)
..+.+.+++||..+|++..+|-.-|-.+...|.|.|-||.-...|+||- . .||| +..++..-.++|-.
T Consensus 304 ~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~---------~--~pR~~~~~q~~~l~~~L~~ 372 (393)
T 4b4t_O 304 NIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISW---------V--QPRIISGDQITKMKDRLVE 372 (393)
T ss_dssp SCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC---------------------------------
T ss_pred CCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEe---------c--cCCCCCHHHHHHHHHHHHH
Confidence 3567999999999999999999999999999999999999888999972 2 1333 33455555555555
Q ss_pred cccchh
Q 026130 224 LETKAQ 229 (243)
Q Consensus 224 L~p~~~ 229 (243)
|.....
T Consensus 373 W~~~v~ 378 (393)
T 4b4t_O 373 WNDQVE 378 (393)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 544444
No 135
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.06 E-value=0.79 Score=37.68 Aligned_cols=47 Identities=19% Similarity=0.359 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcC-ccchHHHHHHcCCChHHHHHHHHHHHhcCCccee
Q 026130 135 LLADFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 181 (243)
Q Consensus 135 lL~~Fi~yIK~~K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV 181 (243)
.|.-..+|+..+. -..+.+||.+|||+..-|-.+|+.|+..|-|..-
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 3433445676655 4789999999999999777889999999999764
No 136
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=87.90 E-value=1.5 Score=32.53 Aligned_cols=77 Identities=9% Similarity=0.121 Sum_probs=53.4
Q ss_pred chhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 132 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
.+..+..+++||..+ .-+.|++||..+|++..-+-..++...-... .=||..-=|......|.. +..
T Consensus 5 ~~~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~----------~~~~~~~Rl~~A~~lL~~-~~~ 73 (113)
T 3oio_A 5 SQPKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVP----------SKYYLELRLNRARQLLQQ-TSK 73 (113)
T ss_dssp GCHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCH----------HHHHHHHHHHHHHHHHHH-CCC
T ss_pred chHHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHc-CCC
Confidence 456799999999886 5689999999999998877776665422110 114444445666666654 667
Q ss_pred cHHHHHhhcc
Q 026130 210 SISHLASKSN 219 (243)
Q Consensus 210 Si~eLa~~sN 219 (243)
||+++|..|.
T Consensus 74 ~i~eIA~~~G 83 (113)
T 3oio_A 74 SIVQIGLACG 83 (113)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHC
Confidence 8888887764
No 137
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=87.88 E-value=1.8 Score=31.77 Aligned_cols=75 Identities=9% Similarity=0.171 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhc---CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCcc
Q 026130 134 DLLADFVEYIKKH---KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 210 (243)
Q Consensus 134 ~lL~~Fi~yIK~~---KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVS 210 (243)
..+...++||..+ .-+.|++||.++|++..-+-..++....... .=||..-=|......|.. +..|
T Consensus 3 ~~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~----------~~~~~~~Rl~~A~~lL~~-~~~s 71 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISV----------LSWREDQRISQAKLLLST-TRMP 71 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHHH-CCCC
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHc-CCCC
Confidence 4678899999877 5689999999999998877776665432111 013444445555566653 5688
Q ss_pred HHHHHhhcc
Q 026130 211 ISHLASKSN 219 (243)
Q Consensus 211 i~eLa~~sN 219 (243)
|+++|..|.
T Consensus 72 i~~IA~~~G 80 (107)
T 2k9s_A 72 IATVGRNVG 80 (107)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887663
No 138
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=87.40 E-value=1.2 Score=36.58 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 195 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eE 195 (243)
..+..|...|..++++..++|+..| ++ ||.+|.| +|-..| ++=|-+..|+|+|.-|.+
T Consensus 5 ~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~V-tqaTisR--DL~eL~-~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 5 QRHIKIREIIMSNDIETQDELVDRLREAGFNV-TQATVSR--DIKEMQ-LVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-CHHHHHH--HHHHTT-CEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHHHHCCCccHHHHHHHHHHcCCCc-CHHHHHH--HHHHcC-CeEEECCCCCEEEEeCCC
Confidence 3567889999999999999999999 76 7888887 333334 456667789999999875
No 139
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=87.32 E-value=1.1 Score=35.08 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=56.5
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE--EEcHHHHHHHHHHHHhcCCccHHHHHhhcc
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI--YISQAEMKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI--YIS~eEl~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
+=..|+++|..=||++..+++-|..|...|...++-+ || .++++++..+.+++...|--++..+-..+.
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~----~i~~~l~~~~~~~I~~~~~~~~~~~Lk~i~e~l~ 101 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDY----FINEVMDEDHLEDIFEYFKESTTDSLEEAMQELG 101 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHH----HHHHHSCHHHHHHHHHHHHHCSCCCHHHHHHHHT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHH----HcccccCHHHHHHHHHHHHHcCcccHHHHHHHcc
Confidence 5567899999999999999999999999997444322 11 244999999999999999888887777765
No 140
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=87.16 E-value=2.9 Score=32.21 Aligned_cols=60 Identities=10% Similarity=0.142 Sum_probs=45.8
Q ss_pred HHHHHHHHh-cCccchHHHHHHcC----CChHHHHHHHHHHHhcCCcceeeeCCCCeEE--EcHHHH
Q 026130 137 ADFVEYIKK-HKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIY--ISQAEM 196 (243)
Q Consensus 137 ~~Fi~yIK~-~KvV~LEdLA~~F~----lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY--IS~eEl 196 (243)
..++.+|-. +.-+...|||..++ ++..-|-.-|..|++.|-|.=.-|.|...+| +|+..+
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 356777877 47789999999998 7888899999999999999998887744443 566654
No 141
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=87.15 E-value=1.5 Score=39.80 Aligned_cols=67 Identities=13% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI~ 204 (243)
.++.+|-.+ .-+.+.+||..+++...-+-.-|..|++.|-|+=.-| -|..+||||+.-...+...+.
T Consensus 408 ~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~ 479 (487)
T 1hsj_A 408 YILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLIS 479 (487)
T ss_dssp HHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHH
Confidence 345566666 6789999999999999999999999999999998875 399999999987765554443
No 142
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=87.10 E-value=0.66 Score=34.35 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=46.7
Q ss_pred HHHHHHHhcCccchHH--------HHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 138 DFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEd--------LA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
..|.-.|.+|.+...+ |...|..++.++-.+|..|...+-|--.-||...|.|+.
T Consensus 15 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 15 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp HHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4456668888776644 677899999999999999999999999988999999984
No 143
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=86.31 E-value=1.2 Score=34.81 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=40.4
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEEcHHHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYIS~eEl~aVA~fI 203 (243)
-+...+||..+|++..-+-.-|..|++.|-|. +.| -|.++|++|+.-...+....
T Consensus 52 ~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~~v~LT~~G~~~~~~~~ 109 (148)
T 4fx0_A 52 DLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCKRIELTAKGRAALQKAV 109 (148)
T ss_dssp --CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCeeEEEECHHHHHHHHHHH
Confidence 47889999999999999999999999999884 444 38999999999887766654
No 144
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=85.94 E-value=2.6 Score=30.56 Aligned_cols=75 Identities=11% Similarity=0.032 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHhc--C-ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCcc
Q 026130 134 DLLADFVEYIKKH--K-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 210 (243)
Q Consensus 134 ~lL~~Fi~yIK~~--K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVS 210 (243)
+++..+++||..+ . -+.|++||..+|++..-+-..++..-.... .=||..-=|......|. .+..|
T Consensus 2 ~~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~----------~~~~~~~Rl~~A~~lL~-~~~~s 70 (103)
T 3lsg_A 2 NAKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIPF----------QDYLLQKRMEKAKLLLL-TTELK 70 (103)
T ss_dssp HHHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHH-HCCCC
T ss_pred hHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHH-CCCCC
Confidence 4678888899877 2 679999999999999887777776532211 11344445566666665 46788
Q ss_pred HHHHHhhcc
Q 026130 211 ISHLASKSN 219 (243)
Q Consensus 211 i~eLa~~sN 219 (243)
|+++|..|.
T Consensus 71 i~~iA~~~G 79 (103)
T 3lsg_A 71 NYEIAEQVG 79 (103)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 888887764
No 145
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=85.84 E-value=4.1 Score=34.54 Aligned_cols=86 Identities=12% Similarity=0.237 Sum_probs=62.0
Q ss_pred HHHHHHHhcC-ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc-----cH
Q 026130 138 DFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SI 211 (243)
Q Consensus 138 ~Fi~yIK~~K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV-----Si 211 (243)
..+.++..+. -+.+.|||..+||+..-|-..++.|+..|-|.-. +.|+| ++++.=+.--..+.....-+ -+
T Consensus 12 ~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~Y-~lg~~~~~l~~~~~~~~~l~~~a~p~l 88 (249)
T 1mkm_A 12 EILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--KDKRY-VPGYKLIEYGSFVLRRFNIRDIAHDHL 88 (249)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--TTSCE-EECTHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC--CCCcE-EECHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566776654 6899999999999999999999999999999875 44555 78887555545555443322 24
Q ss_pred HHHHhhccccccccc
Q 026130 212 SHLASKSNQFIDLET 226 (243)
Q Consensus 212 ~eLa~~sN~lI~L~p 226 (243)
.+|+..+|..+.|.-
T Consensus 89 ~~L~~~~~etv~L~v 103 (249)
T 1mkm_A 89 VDIMKRTGETVHLIL 103 (249)
T ss_dssp HHHHHTTCSCEEEEE
T ss_pred HHHHHHhCCeEEEEE
Confidence 577777777666654
No 146
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=85.83 E-value=1.9 Score=30.26 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCccchHHHHHHcC----CChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~----lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
..++.+|-.+.-+...|||..++ ++..-|-..|..|++.|-|.=.-|.| .|+|.
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 35677777777899999999997 67888889999999999999876644 67773
No 147
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=85.79 E-value=3.1 Score=32.21 Aligned_cols=60 Identities=13% Similarity=0.180 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhcCc------cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 134 DLLADFVEYIKKHKC------IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 134 ~lL~~Fi~yIK~~Kv------V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
.....+.+.|....+ -...+||..||++..-|..-++.|..+|.|.- .--+|-||--++.
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~-~~g~G~~V~~~~~ 80 (126)
T 3by6_A 15 QLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT-IPGKGTFITGNTA 80 (126)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECSCHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE-ecCCeEEEccCch
Confidence 344556666766554 37889999999999999999999999998753 2235555543333
No 148
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=85.76 E-value=0.95 Score=39.17 Aligned_cols=111 Identities=13% Similarity=0.174 Sum_probs=76.9
Q ss_pred HHHhhhhccceec----ccccccccccccchhHHHHHHHHH-----HhcCccchHHHHHHcC-------CChHHHHHHHH
Q 026130 107 FEFEKWKGEFSID----AEGTTENEVQDGDRDLLADFVEYI-----KKHKCIPLEDLAAEFK-------LRTQECINRIT 170 (243)
Q Consensus 107 eEY~kwK~~f~VE----eeG~~~~~~~~~~~~lL~~Fi~yI-----K~~KvV~LEdLA~~F~-------lrtqd~I~RIq 170 (243)
..|..|-..++|. ..|+-. ..+-..+|=...+.|+ +..-++.|.||=..|+ ++++|+..-|+
T Consensus 47 ~~f~~m~~slGvd~Pl~~~~~~s--~~~f~~ELa~qi~e~c~~~~~~~GG~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~ 124 (218)
T 3cuq_B 47 IRFKSYLLSMGIANPVTRETYGS--GTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELLSPEDLVNACK 124 (218)
T ss_dssp HHHHHHHHHHTCCCHHHHTTSSC--SCHHHHHHHHHHHHHHHHHHHHTTSEEEHHHHHHHHHHTCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcchhhccCc--ccHHHHHHHHHHHHHHHHHHHhCCCeEEHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4566677677776 122211 1122344434444443 2346999999999997 99999999999
Q ss_pred HHHhcCCcceeee-CCCCe-EEEcHHHH----HHHHHHHHhcCCccHHHHHhhcc
Q 026130 171 SLENMGRLSGVMD-DRGKY-IYISQAEM----KAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 171 ~Le~~g~LtGViD-DRGKF-IYIS~eEl----~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
.|...|.-..|+. +.|++ |.-.|.++ ..|..++...|.||..+|+..-|
T Consensus 125 ~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~~l~ 179 (218)
T 3cuq_B 125 MLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAKLVG 179 (218)
T ss_dssp TTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHHHHT
T ss_pred HHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHHHhC
Confidence 9999997777777 55774 65556454 66777888899999999998653
No 149
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=85.36 E-value=1.3 Score=33.57 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCccchHH--------HHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 137 ADFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEd--------LA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
...|.-.|.+|.+...+ |...|..++.++-.+|..|...+-|--.=|| +.|+||.
T Consensus 26 AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~YlA 88 (88)
T 3o2p_E 26 ACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYLA 88 (88)
T ss_dssp HHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEECC
T ss_pred eeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEeeC
Confidence 34566778888876654 6778999999999999999999999987667 9999984
No 150
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=84.84 E-value=2 Score=32.25 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 132 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
...++..+++||..+ .-+.|++||..+|++..-+-..++. . |.= + .=||..-=|......| ..+..
T Consensus 5 ~~~~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~--~-G~s--~------~~~~~~~Rl~~A~~lL-~~~~~ 72 (120)
T 3mkl_A 5 QPNMRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE--E-ETS--Y------SQLLTECRMQRALQLI-VIHGF 72 (120)
T ss_dssp CCCHHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH--T-TCC--H------HHHHHHHHHHHHHHHH-TSTTC
T ss_pred cHHHHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH--c-CCC--H------HHHHHHHHHHHHHHHH-HcCCC
Confidence 356789999999877 5678999999999998876665554 1 321 1 1144455566666666 45678
Q ss_pred cHHHHHhhcc
Q 026130 210 SISHLASKSN 219 (243)
Q Consensus 210 Si~eLa~~sN 219 (243)
||++++..|.
T Consensus 73 si~eIA~~~G 82 (120)
T 3mkl_A 73 SIKRVAVSCG 82 (120)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHC
Confidence 8888887764
No 151
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=84.79 E-value=4.5 Score=33.96 Aligned_cols=52 Identities=6% Similarity=0.103 Sum_probs=42.8
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
...+||..+|++..-+-..|+.|++.|-|+=. +.++|++|+.-...+...++
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~~~~ 77 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATAVMR 77 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHHHHH
Confidence 35899999999999999999999999988654 34889999987766555443
No 152
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=84.69 E-value=2.3 Score=30.93 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCC-CeEEEcHHHHHHHHHHHHhcCCccH
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRG-KYIYISQAEMKAVADYIKRQGRVSI 211 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRG-KFIYIS~eEl~aVA~fI~~rGRVSi 211 (243)
..+-..++.++... ..+.++|..||++..-|-.-|+.....|.+. .---.| +--.+|++....|..++...+..|.
T Consensus 20 ~~~r~~i~~~~~~g--~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~-~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~ 96 (128)
T 1pdn_C 20 NNIRLKIVEMAADG--IRPCVISRQLRVSHGCVSKILNRYQETGSIR-PGVIGGSKPRIATPEIENRIEEYKRSSPGMFS 96 (128)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS-CCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc-cccCCCCCCCcCCHHHHHHHHHHHHhCcchHH
Confidence 34445666666533 4678999999998877777777777777542 111134 4556899889999999988899999
Q ss_pred HHHHhhc
Q 026130 212 SHLASKS 218 (243)
Q Consensus 212 ~eLa~~s 218 (243)
.+|+..+
T Consensus 97 ~~i~~~l 103 (128)
T 1pdn_C 97 WEIREKL 103 (128)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888776
No 153
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=84.68 E-value=1.1 Score=29.77 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=26.2
Q ss_pred eEEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 026130 188 YIYISQAEMKAVADYIKRQGRVSISHLASKS 218 (243)
Q Consensus 188 FIYIS~eEl~aVA~fI~~rGRVSi~eLa~~s 218 (243)
-|.+|++|+..|..+....| +|+++++..+
T Consensus 19 ~vRlt~eE~~~l~~~A~~~g-~s~SeyiR~~ 48 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDSG-LTVSAYIRNA 48 (51)
T ss_dssp EEEECHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 36789999999999999999 6899988753
No 154
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=84.54 E-value=2.9 Score=31.80 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=52.7
Q ss_pred cchhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCC
Q 026130 131 GDRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGR 208 (243)
Q Consensus 131 ~~~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGR 208 (243)
....++..+++||..+ .-+.|++||..+|++..-+-..++....... .=||..-=|......|.. +.
T Consensus 8 ~~~~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~----------~~~l~~~Rl~~A~~lL~~-~~ 76 (129)
T 1bl0_A 8 TDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSL----------GQYIRSRKMTEIAQKLKE-SN 76 (129)
T ss_dssp -CHHHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHHH-CC
T ss_pred chHHHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHHc-CC
Confidence 3566899999999876 4589999999999998877777765432211 114444555666666654 45
Q ss_pred ccHHHHHhhc
Q 026130 209 VSISHLASKS 218 (243)
Q Consensus 209 VSi~eLa~~s 218 (243)
.||+++|..|
T Consensus 77 ~si~~IA~~~ 86 (129)
T 1bl0_A 77 EPILYLAERY 86 (129)
T ss_dssp CCHHHHHHHT
T ss_pred CCHHHHHHHH
Confidence 6888887766
No 155
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.29 E-value=2.9 Score=32.45 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCccchHHHHHH------cCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 137 ADFVEYIKKHKCIPLEDLAAE------FKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~------F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
...|.-.|.+|.+...+|-.+ |..++.++-.+|..|...+-|--.-||++.|+|+.
T Consensus 34 AaIVRIMK~rK~l~h~~Lv~eV~~ql~F~p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA 95 (101)
T 2do7_A 34 AAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 95 (101)
T ss_dssp HHHHHHHHHSSEEEHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEECC
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEec
Confidence 345667799999887776443 99999999999999999999999988999999985
No 156
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=84.01 E-value=2.3 Score=35.41 Aligned_cols=58 Identities=14% Similarity=0.246 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCC-hHHHHHHHH-HHHhcCCcceeeeCCCCeEEEc
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLR-TQECINRIT-SLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lr-tqd~I~RIq-~Le~~g~LtGViDDRGKFIYIS 192 (243)
.|-.++.....++++..++|+...+++ ..+|=.-|- +....|-|.|-||...+-++||
T Consensus 96 rlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~ 155 (169)
T 3chm_A 96 KQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVP 155 (169)
T ss_dssp HHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEE
Confidence 356677777789999999999999999 777777666 8888999999999988888887
No 157
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=83.88 E-value=1.9 Score=34.11 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=40.5
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~ 201 (243)
-+...+||..+|++.+-+-.-++.|..+|.|.- ++|+++-+.++-|.++|.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~ 219 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKL---SRGKITILDSKRLETLQR 219 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe---CCCEEEEeCHHHHHHHhc
Confidence 356799999999988888888899999988752 367766667777877763
No 158
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=83.74 E-value=4 Score=31.05 Aligned_cols=57 Identities=26% Similarity=0.287 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCccchHHH--------HHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 136 LADFVEYIKKHKCIPLEDL--------AAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdL--------A~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
=...|.-.|.+|.+...+| ...|..++.++-.+|..|...+-|--.-||++.|+|+.
T Consensus 28 ~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~A 92 (92)
T 1iuy_A 28 EAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92 (92)
T ss_dssp HHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC-
T ss_pred eeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEecC
Confidence 3455677899998876664 45699999999999999999999999888999999984
No 159
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=83.23 E-value=4.7 Score=30.51 Aligned_cols=58 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred cchHHHHHHc--CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 149 IPLEDLAAEF--KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 149 V~LEdLA~~F--~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
-++.+|+..| .++..-+---+..|+.+|-|+..-+++-||.-||+.--..+..++..-
T Consensus 29 ~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 29 RLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp GHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 3456677776 588888888999999999999988667789999999999988887653
No 160
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=82.77 E-value=5.4 Score=33.29 Aligned_cols=54 Identities=19% Similarity=0.302 Sum_probs=45.5
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
+.+.++|..+|++..-+-..|+.|++.|-+.=..|.|++.|++|+.-..-+...
T Consensus 28 ~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~~ 81 (230)
T 3cta_A 28 LTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (230)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHHH
Confidence 558999999999999999999999998777777777899999999876655443
No 161
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=82.63 E-value=3.1 Score=36.03 Aligned_cols=65 Identities=18% Similarity=0.401 Sum_probs=53.5
Q ss_pred HHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCCeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGKYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGKFIYIS~eEl~aVA~f 202 (243)
.++.+|-.+ .-+...+||..+++...-+-.-|+.|++.|-|+=.-|. |-.+||+|+.-...+...
T Consensus 38 ~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~ 107 (250)
T 1p4x_A 38 ILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAER 107 (250)
T ss_dssp HHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHH
Confidence 456667653 46899999999999999999999999999999988764 888999999876644433
No 162
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=82.09 E-value=4.9 Score=33.70 Aligned_cols=64 Identities=8% Similarity=0.092 Sum_probs=47.7
Q ss_pred HHHHHHHhcCcc-chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 138 DFVEYIKKHKCI-PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 138 ~Fi~yIK~~KvV-~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
.+|-++....+. ...+||..+|++..-+-.-|+.|++.|-|+=.-| ++|++|+.-...+...+.
T Consensus 13 ~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~~ 77 (230)
T 1fx7_A 13 RTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIAVMR 77 (230)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHHHHH
Confidence 344444333332 3499999999999999999999999999886544 699999987766655443
No 163
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=81.62 E-value=4.2 Score=30.45 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=42.7
Q ss_pred HHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC-CC---CeEEEcHHHHHHHHHHHHh
Q 026130 152 EDLAAEFKLRTQECINRITSLENMGRLSGVMDD-RG---KYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 152 EdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD-RG---KFIYIS~eEl~aVA~fI~~ 205 (243)
..|+..|+++..-+-.-|..|+..|-|+...+. .| +|+.||+.-...+..++..
T Consensus 30 ~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~ 87 (108)
T 3l7w_A 30 QTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKE 87 (108)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHH
Confidence 345555799999999999999999999998763 22 4666999988888877654
No 164
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=81.53 E-value=6.6 Score=30.61 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCcc------chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHH
Q 026130 135 LLADFVEYIKKHKCI------PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 195 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV------~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eE 195 (243)
....+.+.|....+- ...+||..||++..-|-.-|+.|...|.|.- .+|+=.||++--
T Consensus 9 i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~---~~g~G~~V~~~~ 72 (129)
T 2ek5_A 9 IASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK---KRGIGMFVSAQA 72 (129)
T ss_dssp HHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE---ETTTEEEECTTH
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE---ecCCEEEEecCc
Confidence 345556666655443 5779999999999999999999999998753 355556666543
No 165
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=81.09 E-value=1.9 Score=34.54 Aligned_cols=51 Identities=24% Similarity=0.209 Sum_probs=39.4
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE-cHHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI-SQAEMKAVADY 202 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI-S~eEl~aVA~f 202 (243)
+...+||..+|++.+-+-.-++.|...|.|.- .+|+.|.| .++.|..+|.+
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~~i~d~~~L~~~~~~ 215 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISR---QGRGHYTIPNLVRLKAAADG 215 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE---CSTTCEECSSHHHHHHTC--
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE---cCCceEEEcCHHHHHHHHhc
Confidence 57899999999999888888999999987642 46665555 78888776643
No 166
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=80.97 E-value=2.9 Score=32.45 Aligned_cols=55 Identities=13% Similarity=0.215 Sum_probs=38.4
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee--CCCC---eEEEcHHHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD--DRGK---YIYISQAEMKAVADYI 203 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD--DRGK---FIYIS~eEl~aVA~fI 203 (243)
.+...+||..+|++..+|.+.|+.|++.|-|+=..| |.|+ +..++| =+.+++.|+
T Consensus 51 ~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~p-l~~kL~~~~ 110 (128)
T 2vn2_A 51 FPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLEP-LWEKLVHHL 110 (128)
T ss_dssp SCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehHH-HHHHHHHHH
Confidence 378999999999999999999999999999876544 3454 233333 244555554
No 167
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=80.96 E-value=3.8 Score=31.10 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=41.4
Q ss_pred HHHHHHh---cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE-EcHHH
Q 026130 139 FVEYIKK---HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAE 195 (243)
Q Consensus 139 Fi~yIK~---~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY-IS~eE 195 (243)
.+.||-. ...+.+.+||..+|++..-+-.-++.|...|-|..+-...|-|.. -.+.+
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 4456654 367899999999999999999999999999998776544455654 23444
No 168
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=80.91 E-value=5.6 Score=29.37 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=43.9
Q ss_pred HHHHHHHhcCccchHHHHHHcC----CChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFK----LRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~----lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
.++.+|-.+.=+...|||..++ +...-+-.-|..|++.|-|+=.-|+| .|+|
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~ 69 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFY 69 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEE
Confidence 5667777777889999999997 57888888999999999999998877 6666
No 169
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=80.86 E-value=4.4 Score=36.95 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 199 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aV 199 (243)
...++++..+.++.+.+++..+|++.+-+-.-|+.|.+.|.|.-+-.-|+ .+|+.++=|+.+
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~~~~~~l 361 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPKFVTLM 361 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHHHHHHH
T ss_pred HHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehHHHHHHH
Confidence 46778888899999999999999999999999999999999987755566 678877655543
No 170
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=80.40 E-value=2.7 Score=33.53 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=38.2
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 200 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA 200 (243)
+...+||...|++.+-+-.-++.|...|.|.= ++|+++-+.++.|..+|
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~~L~~~a 226 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRL---EGKSVLISDSERLARRA 226 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe---cCCEEEEcCHHHHHHhh
Confidence 56899999999999888888999999987642 45555555677777665
No 171
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=80.30 E-value=1.7 Score=34.93 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=37.2
Q ss_pred hHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 151 LEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 151 LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
..+||...|++.+-+-.-++.|...| | . -.+|+++-+.++-|..+|.+
T Consensus 181 ~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~-~~~~~i~I~d~~~L~~~~~~ 228 (237)
T 3fx3_A 181 KMLIAGRLGMKPESLSRAFSRLKAAG-V--T-VKRNHAEIEDIALLRDYAES 228 (237)
T ss_dssp THHHHHHTTCCHHHHHHHHHHHGGGT-E--E-CCTTEEEESCHHHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-e--E-eeCCEEEEcCHHHHHHHhcC
Confidence 68999999998888888899999999 5 3 34565555577777777653
No 172
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=80.19 E-value=11 Score=28.88 Aligned_cols=81 Identities=9% Similarity=0.128 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC--CCC-eEEEcHHHHHHHHHHHHhcCCc
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD--RGK-YIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD--RGK-FIYIS~eEl~aVA~fI~~rGRV 209 (243)
..+-..++.++... ..+.++|..||++..-|-.-|+.....|.+ .+. .|. --.+|++....|..++...+..
T Consensus 35 ~e~r~~iv~~~~~G--~s~~~iA~~lgis~~TV~rw~~~~~~~G~~---~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~ 109 (149)
T 1k78_A 35 DVVRQRIVELAHQG--VRPCDISRQLRVSHGCVSKILGRYYETGSI---KPGVIGGSKPKVATPKVVEKIAEYKRQNPTM 109 (149)
T ss_dssp HHHHHHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHHHHHHSCC---CCCCCCCCCCSSSCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHHcCCC---CccCCCCCCCCCCCHHHHHHHHHHHHhCcch
Confidence 34445566666433 567899999999888777778888877753 221 342 3456899999999999998899
Q ss_pred cHHHHHhhc
Q 026130 210 SISHLASKS 218 (243)
Q Consensus 210 Si~eLa~~s 218 (243)
|..+|+...
T Consensus 110 s~~~i~~~l 118 (149)
T 1k78_A 110 FAWEIRDRL 118 (149)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 988887665
No 173
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=79.94 E-value=2.3 Score=34.76 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=40.6
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
-+...+||...|++.+-+-.-++.|...|.|.- ++|+++-+.++-|..+|.+
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDK---KKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CSSEEEESCHHHHHHHHTS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe---CCCEEEEecHHHHHHHHcc
Confidence 357899999999999888888999999987642 4666666677777766654
No 174
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=79.82 E-value=3 Score=32.84 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=39.3
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~ 201 (243)
+...+||...|++.+-+-.-++.|...|.|. + ++|+++-+.++-|..+|.
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~--~-~~~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIR--S-GYGKIQLLDLKGLKELAE 196 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHT
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-CCCEEEEeCHHHHHHHhc
Confidence 5679999999999988888899999999886 2 356655557777777664
No 175
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=79.43 E-value=1.4 Score=36.20 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.2
Q ss_pred HHHhcCccchHHHHHHcC--------------CChHHHHHHHHHHHhcCCcceeeeCCCCeEE-EcHHHHHHHHHHHHh
Q 026130 142 YIKKHKCIPLEDLAAEFK--------------LRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVADYIKR 205 (243)
Q Consensus 142 yIK~~KvV~LEdLA~~F~--------------lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY-IS~eEl~aVA~fI~~ 205 (243)
.|... -+-..+||..|| ++..-+..-|+.|+..|.|.-. -.+|.||- .+...|..++..|..
T Consensus 62 ~i~~g-~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~-~~~G~~Vt~~~~~~l~~ia~~i~~ 138 (150)
T 2v7f_A 62 VYLDG-PVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV-PGKGRVITPKGRSFLDKIATELKK 138 (150)
T ss_dssp HHHHC-SBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE-TTTEEEECHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe-CCCceEECCCCHHHHHHHHHHHHH
Confidence 34444 444589999999 9999999999999999999754 34677663 345677777777653
No 176
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=79.36 E-value=3.7 Score=31.76 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHhcCcc------chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHH
Q 026130 133 RDLLADFVEYIKKHKCI------PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIK 204 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV------~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~ 204 (243)
+.....+...|....+- ...+||..||++..-|..-++.|..+|.|.-+ +|+=.||++--...+....+
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~~~G~~V~~~~~~~~~~~~~ 88 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK---RGIGFFVASGAKMLIHSLRK 88 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE---TTTEEEECTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE---cCCccEEccCcHHHHHHHHH
Confidence 34556666677655543 67799999999999999999999999987644 56666677766555554443
No 177
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=78.86 E-value=1.6 Score=32.09 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCccHHHHHhhcc
Q 026130 196 MKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 196 l~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
|..|-+||+++|+||+++|+...|
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~ 27 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLN 27 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC
Confidence 567889999999999999998765
No 178
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=78.62 E-value=9.9 Score=28.47 Aligned_cols=65 Identities=11% Similarity=0.169 Sum_probs=47.1
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA--~fI~~rGRVSi~eLa~~sN 219 (243)
.+.++|..+|+++.-+ .-.+..|.|..+-.+.|.|-|.|++.+..+. .+++..| +|+.++....+
T Consensus 3 ~i~e~A~~~gvs~~tL----R~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~~I~~~l~ 69 (108)
T 2vz4_A 3 SVGQVAGFAGVTVRTL----HHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELG-FPLDEVAALLD 69 (108)
T ss_dssp CHHHHHHHHTCCHHHH----HHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHH----HHHHHCCCCCCCccCCCCCeecCHHHHHHHHHHHHHHHCC-CCHHHHHHHHh
Confidence 5678999999976554 4446679999887556667778999998765 3445555 88887776543
No 179
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=78.16 E-value=2.5 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=26.5
Q ss_pred EEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 026130 189 IYISQAEMKAVADYIKRQGRVSISHLASKS 218 (243)
Q Consensus 189 IYIS~eEl~aVA~fI~~rGRVSi~eLa~~s 218 (243)
|+|+++.+..+..+....|. |+++|+..+
T Consensus 14 vrl~~el~~~l~~~a~~~g~-s~s~~ir~a 42 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEKNL-TLSDVCRLA 42 (55)
T ss_dssp EEECHHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 89999999999999999997 999998754
No 180
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=78.07 E-value=1.5 Score=32.29 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=32.7
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
...+||..||++..-|-.-|+.|...|.|..+ -.+|.||.
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~-~g~G~~v~ 76 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAVLKSEGLVSSR-GALGTVVE 76 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE-TTTEEESC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe-CCCeEEEc
Confidence 78999999999999999999999999998643 22455543
No 181
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.05 E-value=5.4 Score=29.79 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=43.8
Q ss_pred HHHHHHHHh--cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee---CCCCeEEE
Q 026130 137 ADFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD---DRGKYIYI 191 (243)
Q Consensus 137 ~~Fi~yIK~--~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD---DRGKFIYI 191 (243)
.-++.+|.. ++=+..-|||..+||....+-.-|+.|+..|-|.=|-+ ++-|..|+
T Consensus 23 ~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~L 82 (91)
T 2dk5_A 23 KLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYML 82 (91)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEE
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEE
Confidence 457788887 66899999999999999999999999999999874333 44454444
No 182
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=77.33 E-value=3.6 Score=33.44 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=40.4
Q ss_pred cchHHHHHHcCCCh-HHHHHHHHHHHhcCCcceeeeCCCCeEEE-cHHHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRT-QECINRITSLENMGRLSGVMDDRGKYIYI-SQAEMKAVADYI 203 (243)
Q Consensus 149 V~LEdLA~~F~lrt-qd~I~RIq~Le~~g~LtGViDDRGKFIYI-S~eEl~aVA~fI 203 (243)
+...+||...|++. +-+-.-++.|..+|.|. -.|+.|+| .++.|..+|.|+
T Consensus 170 ~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I~d~~~L~~~~~~~ 222 (238)
T 2bgc_A 170 LTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYVQNLDYLKRYAPKL 222 (238)
T ss_dssp CCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEESCHHHHHHHCHHH
T ss_pred CCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEEeCHHHHHHHhcCC
Confidence 55789999999999 78888899999998764 22444555 788999999885
No 183
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=77.04 E-value=2.8 Score=33.53 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=38.8
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~ 201 (243)
+...+||...|++.+-+-.-++.|...|.|. + ++|+++-+.++-|..+|.
T Consensus 176 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~--~-~~~~i~i~d~~~L~~~a~ 225 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEAHNILE--V-SPRSVTLLDLAALEALSF 225 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-CSSCEEESCHHHHHHCC-
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE--e-cCCEEEEeCHHHHHHHHh
Confidence 5689999999999988888899999998775 2 466666666777776654
No 184
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=76.70 E-value=3.8 Score=32.12 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=37.2
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 200 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA 200 (243)
+...+||...|++.+-+-.-++.|...|.|.- ++|+++-+.++.|..+|
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~~ 188 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIAT---AYRRVYLLDLAALEREA 188 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE---ETTEEEECCHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe---cCCEEEEeCHHHHHHHh
Confidence 56799999999999888888999999987641 34554444666776665
No 185
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=76.68 E-value=0.72 Score=36.76 Aligned_cols=74 Identities=15% Similarity=0.326 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee---eCC--CC----eEEE-----cHHHHHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM---DDR--GK----YIYI-----SQAEMKAVA 200 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi---DDR--GK----FIYI-----S~eEl~aVA 200 (243)
+-...++.+...--+...+||..||++..-|-.+|+.|+..|.|.+++ |.. |. ||.+ |++.+..+.
T Consensus 14 l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 93 (163)
T 2gqq_A 14 IDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFN 93 (163)
T ss_dssp HHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEEEEEECTTTTTCCCEEEEEEECCCCSTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEEeCCHHHcCCceEEEEEEEeccCChhHHHHHH
Confidence 334556666655555899999999999999999999999999998643 221 21 1222 456667777
Q ss_pred HHHHhcCC
Q 026130 201 DYIKRQGR 208 (243)
Q Consensus 201 ~fI~~rGR 208 (243)
..+.....
T Consensus 94 ~~l~~~~~ 101 (163)
T 2gqq_A 94 TAVQKLEE 101 (163)
T ss_dssp HHHSSCTT
T ss_pred HHHHhChh
Confidence 66665443
No 186
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=76.57 E-value=5.6 Score=34.26 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCC--CCeEEE
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR--GKYIYI 191 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDR--GKFIYI 191 (243)
.....+.++.....|...+||..||.++.-+...|..|+.+|.| ++||. |-|-|.
T Consensus 155 ~~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l--~~D~~~eg~~y~p 211 (218)
T 3cuq_B 155 MVASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHL--CRDDSVEGLRFYP 211 (218)
T ss_dssp GHHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE--EEEESSSCEEEEE
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCE--EEECCCCceEEeh
Confidence 45666678888999999999999999999999999999999987 57864 544343
No 187
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=76.36 E-value=4.3 Score=36.84 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=35.8
Q ss_pred HHHhcCccchHHHHHHc--CCChHHHHHHHHHHHhcCCcc
Q 026130 142 YIKKHKCIPLEDLAAEF--KLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 142 yIK~~KvV~LEdLA~~F--~lrtqd~I~RIq~Le~~g~Lt 179 (243)
||..+.-|-..+||..| |++..-+-+=+.+|++.|.|.
T Consensus 30 yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 30 YIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 89999999999999999 998888889999999999985
No 188
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=75.57 E-value=5.2 Score=31.98 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=37.7
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~ 201 (243)
+...+||...|++.+-+-.-++.|..+|.|.- ++|+++-+.++-|.++|.
T Consensus 181 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVSERMLAL---DGKRIKIIDCDRLQKTAR 230 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee---CCCEEEEeCHHHHHHHhh
Confidence 56799999999999888888999999987641 245544446677776653
No 189
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=75.44 E-value=5.4 Score=29.31 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHhc--CccchHHHHHHcCC-ChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 134 DLLADFVEYIKKH--KCIPLEDLAAEFKL-RTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 134 ~lL~~Fi~yIK~~--KvV~LEdLA~~F~l-rtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
.+.+.||+++..+ .++.|+++|..|++ ..-=+-|-++=|+.-|-|+=. ..+.|.++
T Consensus 14 ~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~--~k~~~~W~ 72 (76)
T 1cf7_A 14 LLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKK--SKNSIQWK 72 (76)
T ss_dssp HHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEE--ETTEEEEC
T ss_pred HHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeec--CCCcEEEe
Confidence 4578999999884 58999999999999 666677777778887766543 34445554
No 190
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=74.68 E-value=2.7 Score=30.63 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=29.5
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
.=...-++|++||.+...+.+.+..|-.+|+|-
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LR 49 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQLFSAGTLR 49 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHHHHhcchhh
Confidence 346678999999999999999999999999874
No 191
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=74.62 E-value=5.5 Score=32.78 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=42.5
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE-EcHHHHHHHHHH
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVADY 202 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY-IS~eEl~aVA~f 202 (243)
.++. ..+||..||++..-|-.-|+.|+.+|.|+- .--+|-||- +|..++..+-.+
T Consensus 38 ~~L~-E~~La~~lgVSRtpVREAl~~L~~eGlv~~-~~~~G~~V~~~~~~~~~e~~~~ 93 (222)
T 3ihu_A 38 QRLV-ETDLVAHFGVGRNSVREALQRLAAEGIVDL-QRHRGAVIRRLSLQETLDVLDV 93 (222)
T ss_dssp CEEC-HHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-CSTTCEEECCCCHHHHHHHHHH
T ss_pred CccC-HHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ecCCCeEEecCCHHHHHHHHHH
Confidence 3444 889999999999999999999999998863 344777764 566766655543
No 192
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=74.57 E-value=17 Score=27.44 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=55.6
Q ss_pred HHHHHHhcCc-cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc-----------
Q 026130 139 FVEYIKKHKC-IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ----------- 206 (243)
Q Consensus 139 Fi~yIK~~Kv-V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r----------- 206 (243)
+..|+..+-+ +...+|+..+|+....+-.-+..|...|.|.=+ ++.+...||+.+-+..+..-|...
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P~~ 85 (135)
T 2v9v_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRALEEFHSRYPLR 85 (135)
T ss_dssp HHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHcCcCCCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4456666655 334999999999999999999999999997655 432333389999988766655432
Q ss_pred CCccHHHHHhhc
Q 026130 207 GRVSISHLASKS 218 (243)
Q Consensus 207 GRVSi~eLa~~s 218 (243)
-=++..+|.+..
T Consensus 86 ~G~~keeLr~~~ 97 (135)
T 2v9v_A 86 PGLAREELRSRY 97 (135)
T ss_dssp SCEEHHHHHHHH
T ss_pred cCCCHHHHHHHh
Confidence 224556776654
No 193
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=73.46 E-value=5.6 Score=31.60 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=37.2
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCC-CCeEEE-cHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR-GKYIYI-SQAEMKAVA 200 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDR-GKFIYI-S~eEl~aVA 200 (243)
-+...+||...|++.+-+-.-++.|..+|.| .-. |+.|.| .++.|..+|
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKDLQKLKEFS 217 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESCHHHHHHHC
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcCHHHHHHHh
Confidence 3567999999999998888889999999865 332 446666 666666654
No 194
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=73.09 E-value=5 Score=33.81 Aligned_cols=52 Identities=10% Similarity=0.153 Sum_probs=39.3
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE-EcHHHHHHHH
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAVA 200 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY-IS~eEl~aVA 200 (243)
++ .-.+||..||++..-|-.-|+.|+.+|.|.- .--+|-||. +|..++..+-
T Consensus 51 ~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~-~~~~G~~V~~~~~~~~~el~ 103 (239)
T 2hs5_A 51 RL-SEPDICAALDVSRNTVREAFQILIEDRLVAH-ELNRGVFVRVPTAEDITELY 103 (239)
T ss_dssp EE-CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECCCCHHHHHHHH
T ss_pred Ee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE-eCCCeeEEeCCCHHHHHHHH
Confidence 44 7889999999999999999999999998863 334666653 4555544433
No 195
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=72.88 E-value=15 Score=28.72 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=47.2
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH--HHHHhcCCccHHHHHhhc
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKS 218 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA--~fI~~rGRVSi~eLa~~s 218 (243)
.+.++|..+|+++.- |.-.+..|.|..+.-+.|.|=|.|++.+..+. .+++..| +|+.++...-
T Consensus 2 ~I~e~A~~~gvs~~t----LR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~eI~~~l 67 (135)
T 1q06_A 2 NISDVAKITGLTSKA----IRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVG-FNLEESGELV 67 (135)
T ss_dssp CHHHHHHHHTCCHHH----HHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH----HHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 467899999997654 45567789999875556677788999998765 3445666 8888777654
No 196
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=72.69 E-value=8.8 Score=30.63 Aligned_cols=65 Identities=14% Similarity=0.144 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCCh----HHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcC
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRT----QECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrt----qd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rG 207 (243)
.-++.-+.-++.-||..|-++....||++ +|+|+||+.....+.-. | ++.+.-+.+|...|...+
T Consensus 28 ~e~~~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~------g---~~D~~rl~ai~~lI~~~~ 96 (114)
T 2rnn_A 28 NEVEETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVV------G---KSDPYRVQAVKFLIERIR 96 (114)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCT------T---CCCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcccc------C---CCCHHHHHHHHHHHHHHh
Confidence 45777888889999999999999999988 99999999998877622 2 577888999988888764
No 197
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=72.57 E-value=2 Score=32.44 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCccHHHHHhhcc
Q 026130 196 MKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 196 l~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
|..|-+||+++|+||+++|+...|
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~ 27 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQ 27 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHC
Confidence 467889999999999999998765
No 198
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=72.49 E-value=7.2 Score=32.78 Aligned_cols=44 Identities=11% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD 183 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD 183 (243)
.+.++. ..-+...+||..+|++..-+-..|+.|+..|-|+..-+
T Consensus 20 IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 20 ILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 344553 45678899999999999999999999999999999876
No 199
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=72.36 E-value=4.9 Score=33.67 Aligned_cols=42 Identities=17% Similarity=0.052 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcC
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMG 176 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g 176 (243)
..+..++++..+..|.++|||..||++.+-+..=+++|...|
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 457888999999999999999999998887776677776554
No 200
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=72.01 E-value=16 Score=27.94 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHhcCccchHHHHH-HcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH
Q 026130 139 FVEYIKKHKCIPLEDLAA-EFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD 201 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~-~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~ 201 (243)
.+-||..+-.+.+.|||. ..+|...-+..-|+-|+.+|-|. -+..| +.+|+.-...+..
T Consensus 21 iL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe--~~~~D--l~LT~~G~~~l~~ 80 (95)
T 1bja_A 21 ILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE--KSGDG--LIITGEAQDIISN 80 (95)
T ss_dssp HHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE--EETTE--EEECHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee--cCCCC--eeeCHhHHHHHHH
Confidence 345666667999999999 99999998888899999999999 44444 8899987766543
No 201
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=71.92 E-value=7.3 Score=32.68 Aligned_cols=75 Identities=15% Similarity=0.213 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCcc
Q 026130 133 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS 210 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVS 210 (243)
+.++..+++||..+ .-+.|++||..+|++..-+-..++... |+ .=+=||..-=|...+..|.. +..|
T Consensus 2 ~~~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~------g~----s~~~~~~~~Rl~~a~~~L~~-~~~~ 70 (292)
T 1d5y_A 2 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVT------GH----AIGAYIRARRLSKSAVALRL-TARP 70 (292)
T ss_dssp HHHHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHH------SS----CHHHHHHHHHHHHHHHHHHH-CCCC
T ss_pred hHHHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHH------Cc----CHHHHHHHHHHHHHHHHHhc-CCCC
Confidence 35788999999887 578999999999998766555544321 10 00113333344444445543 3456
Q ss_pred HHHHHhhc
Q 026130 211 ISHLASKS 218 (243)
Q Consensus 211 i~eLa~~s 218 (243)
|+++|..|
T Consensus 71 i~~ia~~~ 78 (292)
T 1d5y_A 71 ILDIALQY 78 (292)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 66666554
No 202
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=71.87 E-value=0.83 Score=37.19 Aligned_cols=29 Identities=21% Similarity=0.457 Sum_probs=25.0
Q ss_pred EEcHHHHHHHHHHHHhcCCccHHHHHhhccc
Q 026130 190 YISQAEMKAVADYIKRQGRVSISHLASKSNQ 220 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~rGRVSi~eLa~~sN~ 220 (243)
|||.+|+++|-+|++ ||+|...|-+..+.
T Consensus 9 ~IT~eEF~sIPkYmr--GRlTle~lN~~i~~ 37 (130)
T 2lyc_A 9 QITDEEFKTIPKYQL--GRLTLEMMNEIVSK 37 (130)
T ss_dssp CCCHHHHTTSCHHHH--SSCCHHHHHHHHHH
T ss_pred eecHHHHhccCHHHH--hhccHHHHHHHHHH
Confidence 899999999999997 99998877666554
No 203
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=71.65 E-value=20 Score=30.25 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHH-HHHHHHHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE-MKAVADYIK 204 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eE-l~aVA~fI~ 204 (243)
+-....+.|++ .=++..-.||...||+-..+-.-|..|+.+|.+.-|-=-+-.|.-++... +++|+.|++
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s~y~~kV~dilr 81 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLVDGMIR 81 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHHHHHHHHHHHHH
Confidence 34568899999 99999999999999999999999999999999998865444455565544 345555554
No 204
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=71.43 E-value=31 Score=26.25 Aligned_cols=73 Identities=11% Similarity=0.095 Sum_probs=51.6
Q ss_pred cCccchHHHHHHc------CCChHHHHHHHHHHHhcCCcceeeeC----CC-CeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 146 HKCIPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMDD----RG-KYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 146 ~KvV~LEdLA~~F------~lrtqd~I~RIq~Le~~g~LtGViDD----RG-KFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
..=..--+|+..+ +++..-+-..|..|+.+|-|+...+. +. ||..||+.-...+..++.. ...+
T Consensus 22 ~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~-----~~~~ 96 (117)
T 4esf_A 22 RRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKK-----WDFV 96 (117)
T ss_dssp HSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHH-----HHHH
T ss_pred cCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHH-----HHHH
Confidence 3444555566655 89999999999999999999998752 33 4555999999999888764 3344
Q ss_pred Hhhcccccc
Q 026130 215 ASKSNQFID 223 (243)
Q Consensus 215 a~~sN~lI~ 223 (243)
....|.|+.
T Consensus 97 ~~~i~~il~ 105 (117)
T 4esf_A 97 SSKINVLKS 105 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 455555543
No 205
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=71.32 E-value=19 Score=27.14 Aligned_cols=59 Identities=19% Similarity=0.137 Sum_probs=45.9
Q ss_pred CccchHHHHHHc------C--CCh-HHHHHHHHHHHhcCCcceeeeC----CCCeEEEcHHHHHHHHHHHHh
Q 026130 147 KCIPLEDLAAEF------K--LRT-QECINRITSLENMGRLSGVMDD----RGKYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 147 KvV~LEdLA~~F------~--lrt-qd~I~RIq~Le~~g~LtGViDD----RGKFIYIS~eEl~aVA~fI~~ 205 (243)
.=..--+|+..+ + ++. ..+-..|..|+..|-|+...+. +=+|.+||+.-...+..++..
T Consensus 25 ~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~ 96 (118)
T 2esh_A 25 KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRS 96 (118)
T ss_dssp SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHH
Confidence 344555666665 3 777 7888899999999999998753 346889999999998888765
No 206
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=71.11 E-value=3.1 Score=36.07 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=42.9
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee-eeCC-----CCeEEEcHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV-MDDR-----GKYIYISQA 194 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV-iDDR-----GKFIYIS~e 194 (243)
..+.+|.. .-+...+||..+|++..-+-..|+.|+..|-|... .+.+ -+|.+||+.
T Consensus 16 ~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~ 77 (232)
T 2qlz_A 16 DLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIA 77 (232)
T ss_dssp HHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCC
T ss_pred HHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccc
Confidence 35566664 55788899999999999999999999999999984 3334 446666654
No 207
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=71.08 E-value=17 Score=26.90 Aligned_cols=76 Identities=7% Similarity=0.022 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
..++.+.... ....++|..||++..-|-.-|+.....|... ..|.--.+|+++...|..+ ...+..|..+|+.
T Consensus 13 ~~i~~~~~~G--~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~----~~gr~~~l~~~~~~~i~~~-~~~~~~s~~~i~~ 85 (141)
T 1u78_A 13 AQLDVMKLLN--VSLHEMSRKISRSRHCIRVYLKDPVSYGTSK----RAPRRKALSVRDERNVIRA-ASNSCKTARDIRN 85 (141)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCC----CCCCCCSSCHHHHHHHHHH-HHHCCCCHHHHHH
T ss_pred HHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHcccccCCcC----CCCCCCcCCHHHHHHHHHH-HhCCCCCHHHHHH
Confidence 4455555433 5788999999998887777777666555432 2566556799998888888 6678899998887
Q ss_pred hcc
Q 026130 217 KSN 219 (243)
Q Consensus 217 ~sN 219 (243)
..|
T Consensus 86 ~lg 88 (141)
T 1u78_A 86 ELQ 88 (141)
T ss_dssp HTT
T ss_pred HHC
Confidence 653
No 208
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=70.73 E-value=9.1 Score=32.34 Aligned_cols=56 Identities=27% Similarity=0.479 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcC------ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcH
Q 026130 135 LLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 193 (243)
Q Consensus 135 lL~~Fi~yIK~~K------vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~ 193 (243)
....+.+.|.... +-...+||..||++..-|..-|+.|..+|.|.-+ +|+=.||++
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~---~g~G~~V~~ 71 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV---RGSGIFVRK 71 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECC
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe---CCceEEEec
Confidence 4455666676543 3357899999999999999999999999988643 444444443
No 209
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=70.48 E-value=9.8 Score=32.30 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHhcC------ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 134 DLLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 134 ~lL~~Fi~yIK~~K------vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
.....+.+.|.... +-...+||..||++..-|..-|+.|..+|.|.-+ --+|.||
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 74 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL-KGRGTFV 74 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-TTSCEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe-CCCeEEE
Confidence 34455666676543 3357899999999999999999999999988642 2345444
No 210
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=70.34 E-value=8.7 Score=31.96 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCc-----c-chHHHHHHcCCChHHHHHHHHHHHhcCCcce-eeeC--CCCeEE
Q 026130 136 LADFVEYIKKHKC-----I-PLEDLAAEFKLRTQECINRITSLENMGRLSG-VMDD--RGKYIY 190 (243)
Q Consensus 136 L~~Fi~yIK~~Kv-----V-~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG-ViDD--RGKFIY 190 (243)
...+.+.|....+ + .-.+||..||++..-|-.-|+.|+.+|.|.- +.-- +|-||-
T Consensus 10 ~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~ 73 (239)
T 2di3_A 10 MDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIIT 73 (239)
T ss_dssp HHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEEC
T ss_pred HHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceee
Confidence 3455555655443 3 3459999999999999999999999998763 1344 576663
No 211
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=69.06 E-value=22 Score=31.52 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHHhcC--ccchHHHHHHcCCChHHHHHHHH----HHHhcCCcceeee--CCCCeEEEc---HHH----HH
Q 026130 133 RDLLADFVEYIKKHK--CIPLEDLAAEFKLRTQECINRIT----SLENMGRLSGVMD--DRGKYIYIS---QAE----MK 197 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~K--vV~LEdLA~~F~lrtqd~I~RIq----~Le~~g~LtGViD--DRGKFIYIS---~eE----l~ 197 (243)
.+.|.+...|+-.+. ++.|.++|..||....-+-.=|. .|+..|.=+-... -.|-+.||. .++ |+
T Consensus 6 ~~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~ 85 (291)
T 1o57_A 6 SGRLVDLTNYLLTHPHELIPLTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQ 85 (291)
T ss_dssp HHHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCceEeHHHHHHHhccchhhhhhhHHHHHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHH
Confidence 456788888886655 59999999999999887777777 8888775333332 256666664 543 45
Q ss_pred HHHHHHHhcCCccHHHHH
Q 026130 198 AVADYIKRQGRVSISHLA 215 (243)
Q Consensus 198 aVA~fI~~rGRVSi~eLa 215 (243)
.|+..|...|+|--.++.
T Consensus 86 ~l~~~l~~~~~v~~G~f~ 103 (291)
T 1o57_A 86 TLGQSLANPERILPGGYV 103 (291)
T ss_dssp HHHHHHTCGGGEETTTEE
T ss_pred HHHHHHHHCCCcccCCeE
Confidence 677888888887654433
No 212
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=69.04 E-value=13 Score=26.27 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=46.4
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhc-CCcceeeeCCCCeEEEcHHHHHHHH--HHHH-hcCCccHHHHHhhc
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENM-GRLSGVMDDRGKYIYISQAEMKAVA--DYIK-RQGRVSISHLASKS 218 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~-g~LtGViDDRGKFIYIS~eEl~aVA--~fI~-~rGRVSi~eLa~~s 218 (243)
...+.++|..+|+++.- |.-.+.. |.+...-++.|.|-|.|++++..+. .+++ ..| +|+.++....
T Consensus 5 ~~~i~e~A~~~gvs~~t----lR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~~I~~l~~~~G-~sl~ei~~~l 74 (81)
T 2jml_A 5 TLRIRTIARMTGIREAT----LRAWERRYGFPRPLRSEGNNYRVYSREEVEAVRRVARLIQEEG-LSVSEAIAQV 74 (81)
T ss_dssp CEEHHHHHHTTSTTHHH----HHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHHHHHHHHHHTS-THHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHH----HHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 46788999999997654 3445665 7676666654778888999998765 4444 445 8887776643
No 213
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=68.64 E-value=23 Score=28.13 Aligned_cols=72 Identities=13% Similarity=0.154 Sum_probs=53.5
Q ss_pred CccchHHHHHHc--------CCChHHHHHHHHHHHhcCCcceeeeC-----CCCeEEEcHHHHHHHHHHHHhcCCccHHH
Q 026130 147 KCIPLEDLAAEF--------KLRTQECINRITSLENMGRLSGVMDD-----RGKYIYISQAEMKAVADYIKRQGRVSISH 213 (243)
Q Consensus 147 KvV~LEdLA~~F--------~lrtqd~I~RIq~Le~~g~LtGViDD-----RGKFIYIS~eEl~aVA~fI~~rGRVSi~e 213 (243)
.=..--+|+..+ +++..-+-..|..|++.|-|+-..+. +-+|.+||+.=...+..++.. +..
T Consensus 53 ~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~-----~~~ 127 (145)
T 1xma_A 53 GDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEE-----WEL 127 (145)
T ss_dssp CCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHH-----HHH
T ss_pred CCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHH-----HHH
Confidence 445555665555 69999999999999999999988653 457889999999888887653 345
Q ss_pred HHhhcccccc
Q 026130 214 LASKSNQFID 223 (243)
Q Consensus 214 La~~sN~lI~ 223 (243)
+....+.++.
T Consensus 128 ~~~~i~~~l~ 137 (145)
T 1xma_A 128 TKKVINKFVK 137 (145)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHc
Confidence 5555566654
No 214
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=68.28 E-value=30 Score=25.52 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 199 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aV 199 (243)
-+-..+.+|... +...+||...||+...+-..|..|...|-|.=. +|. .+||+.-...+
T Consensus 9 Ii~~IL~~i~~~--~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~-~~LT~kG~~~l 67 (95)
T 1r7j_A 9 IIQAILEACKSG--SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQ-YMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHTTC--BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTE-EEECHHHHHHH
T ss_pred HHHHHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCe-eEEChhHHHHH
Confidence 356677788765 889999999999999999999999999988644 344 66999876433
No 215
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=68.02 E-value=15 Score=28.53 Aligned_cols=65 Identities=11% Similarity=0.247 Sum_probs=49.1
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeeeC---CCC-eEEEcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccc
Q 026130 158 FKLRTQECINRITSLENMGRLSGVMDD---RGK-YIYISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETK 227 (243)
Q Consensus 158 F~lrtqd~I~RIq~Le~~g~LtGViDD---RGK-FIYIS~eEl~aVA~fI~~rGRVSi~eLa~~sN~lI~L~p~ 227 (243)
|+++..-+---|..|+..|-|+...+. +.+ |..||+.-...+..++.. +..+...-|.|+.-.+.
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~-----~~~~~~~i~~il~~~~~ 116 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQ-----WHVLCDGVGKLLETNGE 116 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHH-----HHHHHHHHHHHHTCC--
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHH-----HHHHHHHHHHHHccCCc
Confidence 799999999999999999999988643 444 444999999999998753 45666666777654433
No 216
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=67.76 E-value=2.5 Score=31.20 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=16.5
Q ss_pred HHhcCCcceeeeCCCCeEEEcHH
Q 026130 172 LENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 172 Le~~g~LtGViDDRGKFIYIS~e 194 (243)
|+..+.+.-|+|..|+|+|+|+.
T Consensus 5 le~~~d~i~v~d~~G~i~yvn~~ 27 (111)
T 2vlg_A 5 LQTKTDIHAVLASNGRIIYISAN 27 (111)
T ss_dssp ----CCEEEEECTTSBEEEECTT
T ss_pred hhcCCCEEEEEcCCCeEEEEChH
Confidence 45556677789999999999985
No 217
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=66.67 E-value=17 Score=30.98 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=62.6
Q ss_pred HHHHHHH-hcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCcc-----H
Q 026130 138 DFVEYIK-KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVS-----I 211 (243)
Q Consensus 138 ~Fi~yIK-~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVS-----i 211 (243)
..++++. ...-+.+.|||..+||+..-|-..++.|+..|-|.- |.+| ..++++.=+.--..+.....-+. +
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~--~~~~-~Y~lg~~~~~lg~~~~~~~~l~~~a~p~l 103 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS--RADG-SYSLGPEMLRWVRLAGRTWAPPEEVVDIM 103 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE--CTTS-CEEECHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CCCC-eEEecHHHHHHHHHHHccCCHHHHHHHHH
Confidence 4556664 356789999999999999999999999999999976 5567 44788876554445555544333 4
Q ss_pred HHHHhhccccccccc
Q 026130 212 SHLASKSNQFIDLET 226 (243)
Q Consensus 212 ~eLa~~sN~lI~L~p 226 (243)
.+|+..+|.-+.|.-
T Consensus 104 ~~L~~~~~etv~L~v 118 (260)
T 2o0y_A 104 RQLSADTGETVNLYI 118 (260)
T ss_dssp HHHHHHHTSEEEEEE
T ss_pred HHHHHhHCCcEEEEE
Confidence 578887777666654
No 218
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=66.57 E-value=15 Score=33.00 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.6
Q ss_pred HHHHHHHh--cCccchHHHHHHcCCChHHHHHHHHHHHhcCC
Q 026130 138 DFVEYIKK--HKCIPLEDLAAEFKLRTQECINRITSLENMGR 177 (243)
Q Consensus 138 ~Fi~yIK~--~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~ 177 (243)
..++.++. ...+.-++||.+||++..-|-..|+.|.+.|-
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45566644 46899999999999999999999999999987
No 219
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=66.47 E-value=7.7 Score=38.72 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=46.7
Q ss_pred HHHHHHHhcCccchHHHHHH------cCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 138 DFVEYIKKHKCIPLEDLAAE------FKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~------F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
..|.-.|.+|.+...+|=.+ |..++.++-.+|..|...+-|.=.-||++.|+||.
T Consensus 699 aIVRIMK~rK~l~h~~Lv~ev~~ql~F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 699 AIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHSSEEETHHHHHHHHHHSSSCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 45566788888777765433 99999999999999999999999888999999984
No 220
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=66.25 E-value=10 Score=31.24 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCcc------chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 136 LADFVEYIKKHKCI------PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 136 L~~Fi~yIK~~KvV------~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
...+.+.|....+- .-.+||..||++..-|-.-|+.|+.+|.|.-. --+|.||
T Consensus 13 ~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~-~g~G~~V 71 (239)
T 1hw1_A 13 EEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ-HGKPTKV 71 (239)
T ss_dssp HHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEEEE
T ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe-cCCCcEe
Confidence 34555566554432 57799999999999999999999999987632 2345444
No 221
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=65.54 E-value=19 Score=28.92 Aligned_cols=68 Identities=12% Similarity=0.220 Sum_probs=50.6
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA--~fI~~rGRVSi~eLa~~sN 219 (243)
.+...+.++|..+|+++. .|.-.+..|.|...-+ .|.|-|.|++++..+. .+++.-| +|+.++....+
T Consensus 9 ~~~~~i~e~A~~~gvs~~----TLR~ye~~Gll~p~r~-~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~eI~~~l~ 78 (154)
T 2zhg_A 9 KALLTPGEVAKRSGVAVS----ALHFYESKGLITSIRN-SGNQRRYKRDVLRYVAIIKIAQRIG-IPLATIGEAFG 78 (154)
T ss_dssp -CCBCHHHHHHHHTSCHH----HHHHHHHTTSSCCEEC-TTSCEEBCTTHHHHHHHHHHHHHHT-CCHHHHHHHHC
T ss_pred ccCCCHHHHHHHHCcCHH----HHHHHHHcCCCCcccC-CCCCEEeCHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 356789999999999864 4556688899987654 4667778999988765 4556667 89888776544
No 222
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=65.47 E-value=28 Score=27.95 Aligned_cols=63 Identities=19% Similarity=0.287 Sum_probs=48.6
Q ss_pred CccchHHHHHHc--------CCChHHHHHHHHHHHhcCCcceeeeCC-----CCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 147 KCIPLEDLAAEF--------KLRTQECINRITSLENMGRLSGVMDDR-----GKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 147 KvV~LEdLA~~F--------~lrtqd~I~RIq~Le~~g~LtGViDDR-----GKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
.-..--+|+..| +++...+-..++.|+.+|-|+...+.. =++..||+.-...+..++..-...
T Consensus 14 ~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~~~~ 89 (179)
T 1yg2_A 14 RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQPTAH 89 (179)
T ss_dssp CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSCCCC
T ss_pred CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCcccc
Confidence 445566677766 799999999999999999999876542 245679999999999999876543
No 223
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=65.09 E-value=8.6 Score=29.65 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcC------ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 135 LLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 135 lL~~Fi~yIK~~K------vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
....+.+.|.... +-..-+||..||++..-|..-++.|+.+|.|.-. --+|-||
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~-~g~G~~V 78 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV-KGKGTFI 78 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE-cCcEEEE
Confidence 3444555555443 3346689999999999999999999999987632 2355555
No 224
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=64.29 E-value=5.1 Score=36.80 Aligned_cols=54 Identities=19% Similarity=0.224 Sum_probs=44.0
Q ss_pred HHHHHHhcCccchHH--------HHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 139 FVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 139 Fi~yIK~~KvV~LEd--------LA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
.|.-.|.+|.+...+ |...|..++.++-.||..|...+-|-=.=||++.|+||.
T Consensus 321 IVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 321 IIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred EehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 444456777665544 556799999999999999999999999888899999984
No 225
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=64.12 E-value=44 Score=25.19 Aligned_cols=49 Identities=16% Similarity=0.185 Sum_probs=39.6
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeee----C-CCCeEEEcHHHHHHHHHHHHhc
Q 026130 158 FKLRTQECINRITSLENMGRLSGVMD----D-RGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 158 F~lrtqd~I~RIq~Le~~g~LtGViD----D-RGKFIYIS~eEl~aVA~fI~~r 206 (243)
|+++..-+-.-|..|+.+|-|+...+ + +=||..||+.-...+..+...-
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 96 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESW 96 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 38999999999999999999999864 2 3356669999999888887543
No 226
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=64.11 E-value=18 Score=30.48 Aligned_cols=87 Identities=15% Similarity=0.172 Sum_probs=60.1
Q ss_pred HHHHHHHhcC-ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH----HHhcCCccHH
Q 026130 138 DFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY----IKRQGRVSIS 212 (243)
Q Consensus 138 ~Fi~yIK~~K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f----I~~rGRVSi~ 212 (243)
..++++..+. -+.+.|||..+||+..-|-..++.|+..|-|.-. .+.|+| ++++.=+. ++.- +....+-.+.
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~-~~~~~Y-~lg~~~~~-lg~~~~~~l~~~a~p~l~ 86 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL-GPAGGF-RLGPALGQ-LINQAQTDILSLVKPYLR 86 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC-GGGCEE-EECSHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe-CCCCeE-EECHHHHH-HHhhcccCHHHHHHHHHH
Confidence 4566776554 6899999999999999999999999999999863 223555 77765332 2221 2222333456
Q ss_pred HHHhhcccccccccc
Q 026130 213 HLASKSNQFIDLETK 227 (243)
Q Consensus 213 eLa~~sN~lI~L~p~ 227 (243)
+|+..+|..+.|.--
T Consensus 87 ~L~~~tgetv~L~v~ 101 (241)
T 2xrn_A 87 SLAEELDESVSLASL 101 (241)
T ss_dssp HHHHHHTSEEEEEEE
T ss_pred HHHHHHCCeEEEEEE
Confidence 788888877777654
No 227
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=64.01 E-value=8.1 Score=24.21 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=26.0
Q ss_pred EEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 026130 189 IYISQAEMKAVADYIKRQGRVSISHLASKS 218 (243)
Q Consensus 189 IYIS~eEl~aVA~fI~~rGRVSi~eLa~~s 218 (243)
|+|+++-+..+-.+....|+ |.++|...+
T Consensus 7 v~l~~~l~~~Ld~~a~~~g~-srS~~ir~a 35 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREMGL-SKSAMISVA 35 (45)
T ss_dssp EEEEHHHHHHHHHHHHHHTC-CHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHCc-CHHHHHHHH
Confidence 89999999999999999996 999988753
No 228
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=63.72 E-value=7.6 Score=33.15 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=35.3
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
++=.-.+||..||++..-|..-|+.|..+|.|.- --+|.||
T Consensus 35 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 35 PFPAEREIAEQFEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp BCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 4446789999999999999999999999999987 6677766
No 229
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=63.52 E-value=12 Score=31.41 Aligned_cols=48 Identities=17% Similarity=0.332 Sum_probs=41.5
Q ss_pred cCccchHHHHHHcCC------ChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcH
Q 026130 146 HKCIPLEDLAAEFKL------RTQECINRITSLENMGRLSGVMDDRGKYIYISQ 193 (243)
Q Consensus 146 ~KvV~LEdLA~~F~l------rtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~ 193 (243)
..-+.|.+++..+++ +.+||-.-+-.|..+|.|-|.||-..+.+-+|.
T Consensus 139 ~~rI~l~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk 192 (203)
T 3t5x_A 139 THQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSK 192 (203)
T ss_dssp CSEEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECS
T ss_pred CCcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECC
Confidence 557899999999964 788999999999999999999998777776764
No 230
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=63.42 E-value=23 Score=26.37 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=47.2
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH--HHHhcCCccHHHHHhhc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKS 218 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~--fI~~rGRVSi~eLa~~s 218 (243)
..+.++|..+|+++.- |...+..|.|..+-.+.|.|-|.|++++..+.. +++.-| +|+.++....
T Consensus 3 ~~i~e~A~~~gvs~~t----LR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~I~~l~~~G-~~l~~I~~~l 69 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRT----LHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIG-FRLDEIKEML 69 (109)
T ss_dssp BCHHHHHHHHSCCHHH----HHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 4578999999997654 445567899998875667788889999987653 334445 7877776544
No 231
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=63.37 E-value=5.9 Score=35.25 Aligned_cols=81 Identities=16% Similarity=0.306 Sum_probs=48.2
Q ss_pred HHHHHhhhhccceecccccccccccccchhHHHHHHHHHHhcCccch----HHHHHHc---CCChHHHHHHHHHHHhcCC
Q 026130 105 AAFEFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPL----EDLAAEF---KLRTQECINRITSLENMGR 177 (243)
Q Consensus 105 E~eEY~kwK~~f~VEeeG~~~~~~~~~~~~lL~~Fi~yIK~~KvV~L----EdLA~~F---~lrtqd~I~RIq~Le~~g~ 177 (243)
....+..+...+- +... .-+--..|...|.||+..+.+.- .++...+ .++.++.-.- -|++.+.
T Consensus 27 ~n~~~~~l~~~~p----~~~~---~~dk~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~a~~~ 97 (361)
T 4f3l_A 27 FNVLIKELGSMLP----GNAR---KMDKSTVLQKSIDFLRKHKETTAQSDASEIRQDWKPTFLSNEEFTQL--MLEALDG 97 (361)
T ss_dssp HHHHHHHHHHTCC----SSSC---CCCHHHHHHHHHHHHHHHHHHHTSCSCGGGTSCCSCTTSCHHHHHHH--HHHHTTE
T ss_pred HHHHHHHHHHhCC----CCCC---CcCHHHHHHHHHHHHHHHHhhcccccccccccccCcccccHHHHHHH--HHHhcCc
Confidence 3456666777765 1111 12234679999999998875432 1111111 1233333332 2567777
Q ss_pred cceeeeCCCCeEEEcHH
Q 026130 178 LSGVMDDRGKYIYISQA 194 (243)
Q Consensus 178 LtGViDDRGKFIYIS~e 194 (243)
+.-|+|..|+|+|+|+.
T Consensus 98 ~i~v~~~~G~i~yvs~~ 114 (361)
T 4f3l_A 98 FFLAIMTDGSIIYVSES 114 (361)
T ss_dssp EEEEEETTSBEEEECTT
T ss_pred eEEEEcCCccEEEEech
Confidence 88889999999999963
No 232
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=61.96 E-value=12 Score=31.14 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 132 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
....+..|++||..+ .-+.|++||..+|+++.-+....+ . .| +- =.=||..-=|......+ ..+..
T Consensus 167 ~~~~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk--~-~G----~t----~~~~l~~~Rl~~A~~lL-~~~~~ 234 (276)
T 3gbg_A 167 DLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE--S-RG----VK----FRELINSIRISYSISLM-KTGEF 234 (276)
T ss_dssp TTCHHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH--T-TT----CC----HHHHHHHHHHHHHHHHH-HHTCC
T ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH--H-cC----CC----HHHHHHHHHHHHHHHHH-hCCCC
Confidence 445789999999875 457899999999998876655553 2 33 10 01134444455655555 45788
Q ss_pred cHHHHHhhcc
Q 026130 210 SISHLASKSN 219 (243)
Q Consensus 210 Si~eLa~~sN 219 (243)
||+++|..|.
T Consensus 235 si~eIA~~~G 244 (276)
T 3gbg_A 235 KIKQIAYQSG 244 (276)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHhC
Confidence 9999998875
No 233
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=61.79 E-value=17 Score=30.62 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=33.4
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
.++ ...+||..||++..-|-.-|..|+.+|.|.-+ --+|-||
T Consensus 48 ~~L-~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~-~~~G~~V 89 (237)
T 3c7j_A 48 TAL-RQQELATLFGVSRMPVREALRQLEAQSLLRVE-THKGAVV 89 (237)
T ss_dssp CBC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred Cee-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCCceEE
Confidence 344 89999999999999999999999999987633 2245443
No 234
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=61.39 E-value=24 Score=32.29 Aligned_cols=62 Identities=13% Similarity=0.207 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 199 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aV 199 (243)
..+++++..+-++.+.+++..+|++..-+-.-|+.|.+.|.|.-+-.-|+ .+||.++=|+-+
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~gR~-~~y~~~~~l~il 361 (373)
T 3eqx_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPKFVTLM 361 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHHHHHHH
T ss_pred HHHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCCCc-eEeehHHHHHHH
Confidence 35677888899999999999999998888888999999999987655455 568888655543
No 235
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=61.04 E-value=11 Score=33.67 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG 180 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG 180 (243)
...+++|..+.-+.--|||..+||+..-|-++|++|+..|.|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 45788999999999999999999999999999999999887643
No 236
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=60.89 E-value=12 Score=33.86 Aligned_cols=44 Identities=16% Similarity=0.110 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcce
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSG 180 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtG 180 (243)
...+++|..+.-+.--|||..+||+..-|-++|++|++.|.|..
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 45788999999999999999999999999999999999987643
No 237
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=60.12 E-value=19 Score=27.45 Aligned_cols=71 Identities=10% Similarity=0.070 Sum_probs=47.9
Q ss_pred CccchHHHHHHcC------CChHHHHHHHHHHHhcCCcceeee--C--CCC-eEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 147 KCIPLEDLAAEFK------LRTQECINRITSLENMGRLSGVMD--D--RGK-YIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 147 KvV~LEdLA~~F~------lrtqd~I~RIq~Le~~g~LtGViD--D--RGK-FIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
.=..--+|+..++ ++..-+-.-|..|+.+|-|+...+ + +.+ |..||+.-...+..++.. +..+.
T Consensus 26 ~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~-----~~~~~ 100 (117)
T 3elk_A 26 RPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQA-----LQLAR 100 (117)
T ss_dssp SCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTT-----HHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH-----HHHHH
Confidence 3344445555554 777778889999999999998875 2 334 445999998888877654 44444
Q ss_pred hhccccc
Q 026130 216 SKSNQFI 222 (243)
Q Consensus 216 ~~sN~lI 222 (243)
..-|.|+
T Consensus 101 ~~i~~~l 107 (117)
T 3elk_A 101 KIIDDLL 107 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 238
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.73 E-value=15 Score=28.46 Aligned_cols=81 Identities=7% Similarity=0.119 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC---CCC-eEEEcHHHHHHHHHHHHhcCC
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD---RGK-YIYISQAEMKAVADYIKRQGR 208 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD---RGK-FIYIS~eEl~aVA~fI~~rGR 208 (243)
..+-..++.++... ..+.++|..||++..-|-.-|+.....|. +.+ .|. .--+|++....|..++.....
T Consensus 28 ~e~r~~ii~l~~~G--~s~~~IA~~lgis~~TV~rwl~r~~~~G~----~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~ 101 (159)
T 2k27_A 28 EVVRQRIVDLAHQG--VRPCDISRQLRVSHGCVSKILGRYYETGS----IRPGVIGGSKPKVATPKVVEKIGDYKRQNPT 101 (159)
T ss_dssp HHHHHHHHHHHHHT--CCHHHHHHHHTCCSHHHHHHHCCSSTTSC----CCCCCCCCCCCCCCCTTHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHHHHHhcCC----ccCCCCCCCCCCCCCHHHHHHHHHHHHHCcc
Confidence 34445666666543 57789999999987766655555554443 333 232 445688899999999998889
Q ss_pred ccHHHHHhhcc
Q 026130 209 VSISHLASKSN 219 (243)
Q Consensus 209 VSi~eLa~~sN 219 (243)
+|..+|+..+.
T Consensus 102 ~s~~~i~~~l~ 112 (159)
T 2k27_A 102 MFAWEIRDRLL 112 (159)
T ss_dssp SCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99988887764
No 239
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=59.65 E-value=9.4 Score=31.09 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=32.4
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHH
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 197 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~ 197 (243)
+...+||...|++.+-+-.-++.|...|.|. + ++|+++-+.++.|.
T Consensus 194 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~--~-~~~~i~I~d~~~L~ 239 (243)
T 3la7_A 194 LSHQAIAEAIGSTRVTVTRLLGDLREKKMIS--I-HKKKITVHKPVTLS 239 (243)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-ETTEEEECC-----
T ss_pred CCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE--E-cCCEEEECCHHHHH
Confidence 4679999999999998888999999998876 2 35555544554443
No 240
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=59.50 E-value=15 Score=36.76 Aligned_cols=55 Identities=24% Similarity=0.333 Sum_probs=45.7
Q ss_pred HHHHHHHhcCccchHH--------HHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 138 DFVEYIKKHKCIPLED--------LAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEd--------LA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
..|.-.|.+|.+...+ |...|..++.++-.+|..|...+-|.-.-||++.|+||.
T Consensus 698 aIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 698 AIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred eehhhhhccCCCcHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 4555668888766555 445699999999999999999999999888999999984
No 241
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=58.54 E-value=22 Score=32.28 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=41.5
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCe-EEEcHHHHHHHHHHHHhcCCccH
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKY-IYISQAEMKAVADYIKRQGRVSI 211 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKF-IYIS~eEl~aVA~fI~~rGRVSi 211 (243)
..-+.|+|||..-|+++.|||..++.| |.|. -..|.+ |+||++-++...+. ..++++.|
T Consensus 206 ~~~isi~~is~~Tgi~~~Dii~tL~~l---~~l~---~~kg~~~i~~~~~~~~~~~k~-~~k~~~~i 265 (276)
T 3to7_A 206 QKEITIDEISSMTSMTTTDILHTAKTL---NILR---YYKGQHIIFLNEDILDRYNRL-KAKKRRTI 265 (276)
T ss_dssp CSEEEHHHHHHHHCBCHHHHHHHHHHT---TCEE---EETTEEEEECCHHHHHHHHHH-HHTCCCCC
T ss_pred CCceeHHHHHHHhCCCHHHHHHHHHHC---CCEE---EeCCcEEEEECHHHHHHHHHH-hcCCCcEE
Confidence 457899999999999999998776654 5542 235666 77888777665554 34455554
No 242
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=58.41 E-value=14 Score=30.17 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=38.6
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE-EcHHHHHHH
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY-ISQAEMKAV 199 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY-IS~eEl~aV 199 (243)
.++ .-.+||..||++..-|-.-|+.|+.+|.|.-. --+|-||- +|++++..+
T Consensus 34 ~~L-~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~-~~~G~~V~~~~~~~~~el 86 (218)
T 3sxy_A 34 EKL-NVRELSEKLGISFTPVRDALLQLATEGLVKVV-PRVGFFVTDVDEKFIRET 86 (218)
T ss_dssp CEE-CHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTTEEEECCCCHHHHHHH
T ss_pred CEe-CHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCCceEEcCCCHHHHHHH
Confidence 345 78899999999999999999999999988533 33555553 345554443
No 243
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=57.91 E-value=21 Score=30.11 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhcC------ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcH
Q 026130 134 DLLADFVEYIKKHK------CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 193 (243)
Q Consensus 134 ~lL~~Fi~yIK~~K------vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~ 193 (243)
.....+.+.|.... +=...+||..||++..-|..-|+.|..+|.|..+ +|+=.||++
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~g~G~~V~~ 75 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK---NGVGLYVQP 75 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECC
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---CCceEEEcc
Confidence 34455666676543 3357899999999999999999999999997654 444445544
No 244
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=57.54 E-value=18 Score=28.36 Aligned_cols=44 Identities=27% Similarity=0.408 Sum_probs=37.6
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
+.|.+.+||..+|++..-+..-++.|...|-|..+-...|-|.-
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 58999999999999999999999999999998877555455543
No 245
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=57.33 E-value=20 Score=31.31 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=38.9
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
|-.-|.++....-+...+||..||++..-+-.-|+.|.+.|.|.
T Consensus 9 ~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 9 LIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 44567778888889999999999999988888899999999997
No 246
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=56.71 E-value=56 Score=24.67 Aligned_cols=74 Identities=11% Similarity=0.229 Sum_probs=53.1
Q ss_pred CccchHHHHHHc------CCChHHHHHHHHHHHhcCCcceeee--CCC---CeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 147 KCIPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMD--DRG---KYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 147 KvV~LEdLA~~F------~lrtqd~I~RIq~Le~~g~LtGViD--DRG---KFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
.=..--+|+..+ +++..-+-.-|..|+.+|-|+...+ +.| ||..||+.-...+..++.. ...+.
T Consensus 21 ~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~-----~~~~~ 95 (115)
T 4esb_A 21 EEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQS-----WGMVS 95 (115)
T ss_dssp SCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHH-----HHHHH
T ss_pred CCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHH-----HHHHH
Confidence 334444555554 5889889999999999999999875 223 4555999999999988764 45666
Q ss_pred hhcccccccc
Q 026130 216 SKSNQFIDLE 225 (243)
Q Consensus 216 ~~sN~lI~L~ 225 (243)
..-|.|+.-.
T Consensus 96 ~~i~~il~~~ 105 (115)
T 4esb_A 96 TTVNNLLQGE 105 (115)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHCCC
Confidence 6666766443
No 247
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=56.22 E-value=31 Score=25.82 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHhcCccchHHHHHHcCC----ChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKL----RTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~l----rtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
.++.+|-.+.-+...||+..++. +..-|-.-|..|++.|-|.=.-|.| .|+|-
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR-~~~Y~ 95 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGR-KFVYR 95 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETT-EEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCC-EEEEE
Confidence 34555555667899999999974 5677888899999999998775544 67774
No 248
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=56.20 E-value=17 Score=35.79 Aligned_cols=57 Identities=18% Similarity=0.240 Sum_probs=48.5
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcC-------CChHHHHHHHHHHHhcCCcceeeeC--CCCeEEE
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFK-------LRTQECINRITSLENMGRLSGVMDD--RGKYIYI 191 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~-------lrtqd~I~RIq~Le~~g~LtGViDD--RGKFIYI 191 (243)
.......+.++..+..|...+||..|| ++..-+...|..|+.+|.| ++|| .|-|-|.
T Consensus 493 ~~~~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l--~rDd~~~G~~yyp 558 (566)
T 1w7p_D 493 DVVKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDL--LIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSE--EEEEETTEEEEEE
T ss_pred hHHHHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCE--EEECCCCceEEeh
Confidence 355677778888899999999999999 9999999999999999988 6886 4655554
No 249
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=54.51 E-value=17 Score=28.88 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=33.5
Q ss_pred HHHhcCccchHHHHHHcCC------ChHH-HHHHHHHHHhcCCc---ceeee
Q 026130 142 YIKKHKCIPLEDLAAEFKL------RTQE-CINRITSLENMGRL---SGVMD 183 (243)
Q Consensus 142 yIK~~KvV~LEdLA~~F~l------rtqd-~I~RIq~Le~~g~L---tGViD 183 (243)
-++...+.-|.+||..||+ +.++ +...++.+...|.+ +||+|
T Consensus 5 eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~~~~~~~~~~Gvle 56 (130)
T 1a62_A 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLE 56 (130)
T ss_dssp HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEE
Confidence 3578889999999999997 5567 55567888888854 89988
No 250
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=54.48 E-value=22 Score=27.81 Aligned_cols=44 Identities=9% Similarity=-0.047 Sum_probs=36.3
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
.+.+.+.+||..+|++..-+-.-++.|...|-|..+-- .|-|.-
T Consensus 28 ~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 28 SSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 46889999999999999999999999999999987766 666654
No 251
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=54.09 E-value=29 Score=26.31 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=40.5
Q ss_pred HcCCChHHHHHHHHHHHhcCCcceeeeCC---C---CeEEEcHHHHHHHHHHHHh
Q 026130 157 EFKLRTQECINRITSLENMGRLSGVMDDR---G---KYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 157 ~F~lrtqd~I~RIq~Le~~g~LtGViDDR---G---KFIYIS~eEl~aVA~fI~~ 205 (243)
.++++..-+---|..|+.+|-|+...++. | ||..||+.-...+..++..
T Consensus 51 ~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 105 (115)
T 2dql_A 51 TYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARL 105 (115)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 45799999999999999999999986542 3 7889999988888887654
No 252
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=54.05 E-value=5.6 Score=31.47 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.5
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||...|++.+-+-.-++.|...|.|.- ++|+ |+|.
T Consensus 179 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~-i~i~ 218 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL---DGRE-ISIL 218 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE---SSSC-EEES
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe---cCCE-EEEe
Confidence 56799999999998888888999999987752 4555 5553
No 253
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=53.54 E-value=6.9 Score=30.77 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=38.3
Q ss_pred EcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccchhhhhh
Q 026130 191 ISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETKAQFVED 233 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rGRVSi~eLa~~sN~lI~L~p~~~~~~~ 233 (243)
+|++|+..||..+...|.||-.++....+++.+=.|...+.+.
T Consensus 39 Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~R 81 (103)
T 2kvc_A 39 LSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPSPEDVER 81 (103)
T ss_dssp SCHHHHHHHHHHHHHHTSSCSSCHHHHHHSCCSSCSCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 7899999999999999999988999999999999998887644
No 254
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=53.34 E-value=15 Score=28.50 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.1
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||...|++.+-+-.-++.|...|.|. -.|+.|.|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~ 204 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVF 204 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEE
Confidence 5778999999998888888899999998764 234556654
No 255
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=53.03 E-value=14 Score=32.92 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=36.7
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
.+++|. +.-+.--|||..+||+..-|-++|++|++.|.|.
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 577888 8889999999999999999999999999998874
No 256
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=52.28 E-value=53 Score=28.08 Aligned_cols=78 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred HHHHHHhcCc-cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHh------------
Q 026130 139 FVEYIKKHKC-IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKR------------ 205 (243)
Q Consensus 139 Fi~yIK~~Kv-V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~------------ 205 (243)
+..|+..+-+ +...+|+..+|+....+-.-+..|...|.+.=+ +..|...||+.+-+..+...|..
T Consensus 7 l~~~L~~~~~~~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~ 85 (258)
T 1lva_A 7 LAQIIQEHREGLDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRALEEFHSRYPLR 85 (258)
T ss_dssp HHHHHHTCTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe-ccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3445666655 334999999999999999999999999997655 33233338999988765554432
Q ss_pred cCCccHHHHHhhc
Q 026130 206 QGRVSISHLASKS 218 (243)
Q Consensus 206 rGRVSi~eLa~~s 218 (243)
.| ++..+|.+..
T Consensus 86 ~G-~~~~~L~~~~ 97 (258)
T 1lva_A 86 PG-LAREELRSRY 97 (258)
T ss_dssp SC-EEHHHHHHHH
T ss_pred cC-CCHHHHHHhc
Confidence 23 7777776643
No 257
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=52.12 E-value=25 Score=29.40 Aligned_cols=90 Identities=14% Similarity=0.177 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC--------------CCCeEEEcHHH-
Q 026130 133 RDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD--------------RGKYIYISQAE- 195 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD--------------RGKFIYIS~eE- 195 (243)
.+-|..|++|++.. ++-++==|++.-|||..+++.-+.+ -+.+ |+|+ ++-|+|.+. +
T Consensus 9 ~eEl~~fl~~~k~~~~~~y~lfrLll~TG~R~gEaLaLl~~---p~~~--v~~~~i~~Y~l~~~~g~K~~~~~f~~~-~l 82 (163)
T 3vcf_A 9 LEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKE---PERD--ICGNDVCYYPLSWTRGYKGVFYVFHIT-PL 82 (163)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHS---GGGC--EEETTEEEEEEECCSSSCCEEEEEESS-CC
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhCccHHHHHHHHcC---Ccee--eecCCEEEEEhhhhcCccceEEEEeec-cc
Confidence 34588999999984 5556667999999999999998877 2233 4664 255888864 4
Q ss_pred ------HHHHHHHHHhc-CCccHHHHHhhccc-ccccccch
Q 026130 196 ------MKAVADYIKRQ-GRVSISHLASKSNQ-FIDLETKA 228 (243)
Q Consensus 196 ------l~aVA~fI~~r-GRVSi~eLa~~sN~-lI~L~p~~ 228 (243)
...|..|++.. |+|+...|-...++ +|...-+.
T Consensus 83 ~~~~it~~~v~~~~~~~~~~v~~~~iRk~~~t~m~~~gvp~ 123 (163)
T 3vcf_A 83 KRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPL 123 (163)
T ss_dssp CCCBCCHHHHHHHHHTCTTSCCTHHHHHHHHHHHHHTTCCH
T ss_pred ccccCCHHHHHHHHHhccCCcCHHHHHHHHHHHHHHcCCCH
Confidence 45888999987 89999888876655 44444433
No 258
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=51.82 E-value=15 Score=28.59 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.0
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||...|++.+-+-.-++.|...|.|. -.|+.|.|.
T Consensus 168 ~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 207 (210)
T 3ryp_A 168 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 207 (210)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEE
Confidence 5679999999998888888899999998765 345556664
No 259
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=51.45 E-value=60 Score=27.78 Aligned_cols=58 Identities=3% Similarity=0.093 Sum_probs=45.8
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcC
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rG 207 (243)
+.-|-.-+||..+|++...|-.-|+.|.+.|-|+ .+. .+|++|++-..-....++...
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~--~~~--~Gv~LTe~G~~~A~~i~~rhr 85 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIR--SKQ--RGHFLTLKGKEIRDKLLSMFS 85 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE--EC----CEEECHHHHHHHHHHHTTBC
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEE--EeC--CCeEECHHHHHHHHHHHHHHH
Confidence 3568889999999999999999999999999884 233 699999988775555555444
No 260
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=51.45 E-value=30 Score=30.54 Aligned_cols=77 Identities=12% Similarity=0.191 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHhc--CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc
Q 026130 132 DRDLLADFVEYIKKH--KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV 209 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~--KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV 209 (243)
....+..+++||..+ .-+.|++||..+|++..-+-.+++...-..- .=||..-=|......+. .+..
T Consensus 303 ~d~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~g~s~----------~~~~~~~r~~~a~~~L~-~~~~ 371 (412)
T 4fe7_A 303 TDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETI----------HAMIHAEKLEKARSLLI-STTL 371 (412)
T ss_dssp CCHHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHHSSCH----------HHHHHHHHHHHHHHHHH-HCCC
T ss_pred ccHHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHHHHHh-cCCC
Confidence 356789999999875 6789999999999998888777776432110 11445555666666664 4567
Q ss_pred cHHHHHhhcc
Q 026130 210 SISHLASKSN 219 (243)
Q Consensus 210 Si~eLa~~sN 219 (243)
||+++|..|.
T Consensus 372 ~i~~ia~~~G 381 (412)
T 4fe7_A 372 SINEISQMCG 381 (412)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHcC
Confidence 8888877664
No 261
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=50.90 E-value=18 Score=28.10 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=46.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee--eCCCCe-----EEEcHHHHHHHHHHHHhcCCcc
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM--DDRGKY-----IYISQAEMKAVADYIKRQGRVS 210 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi--DDRGKF-----IYIS~eEl~aVA~fI~~rGRVS 210 (243)
..+.|+.... .+|. +-.+|++-....+-++.|..+|-|.||- ++ +.. ++||++-++ |+...+...
T Consensus 9 kIL~~L~~~~-~~is--~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~-~~~i~~~~~~IT~~Gle----YL~ENS~mk 80 (102)
T 2hgc_A 9 AILKEIFEGN-TPLS--ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDD-RPHLYKLGPELTEKGEN----YLKENGTWS 80 (102)
T ss_dssp HHHHHHHHHC-SCCC--HHHHTSCHHHHHHHHHHHHHHTSEECCEESSS-SEECCSSCCEECHHHHH----HHHHHTCSC
T ss_pred HHHHHHHhCC-CcCC--HHhcCCCHHHHHHHHHHHHHCCCccceEEEeC-cceeeccCceECHHHHH----HHHHChHHH
Confidence 4455555532 2332 5678999999999999999999999994 44 554 359998874 666666665
Q ss_pred H
Q 026130 211 I 211 (243)
Q Consensus 211 i 211 (243)
.
T Consensus 81 K 81 (102)
T 2hgc_A 81 K 81 (102)
T ss_dssp C
T ss_pred H
Confidence 3
No 262
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=50.74 E-value=82 Score=29.95 Aligned_cols=86 Identities=14% Similarity=0.244 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCC------------------CCeEEEcHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR------------------GKYIYISQAE 195 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDR------------------GKFIYIS~eE 195 (243)
.+....+.++-.+--++|-+|+...+|+...|-.-|--|...|-++=..+.+ |+||++-.+.
T Consensus 19 ~~~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~~~~~il~~lR~pk~l~~i~~~ 98 (534)
T 2xub_A 19 EIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTL 98 (534)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEECHHHHHGGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEEChhhHHHHHhhHHHHHHHHHH
Confidence 3456667778888889999999999999999999999999999997555555 4555555555
Q ss_pred H----HHHHHHHHhcCCccHHHHHhhcc
Q 026130 196 M----KAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 196 l----~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
+ ..|...|-+.|++++++|...+.
T Consensus 99 ~G~~a~~I~~~ll~~G~~t~~~ll~~~~ 126 (534)
T 2xub_A 99 YSDTGELIVEELLLNGKLTMSAVVKKVA 126 (534)
T ss_dssp HHHHHHHHHHHHHHHCCBCHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 5 44567778899999999977765
No 263
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.57 E-value=52 Score=25.10 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=43.6
Q ss_pred HHHHHHh-cCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 139 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 139 Fi~yIK~-~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
.++++.. ..-+..++|...+ +++..-|-+-|+.|...|.|.-+-.+.|..-|=
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 3444443 4578899999888 899999999999999999999998888887773
No 264
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=50.40 E-value=19 Score=25.65 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=31.2
Q ss_pred eCCCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 183 DDRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 183 DDRGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
--.|+-|.+|+.|+.-+.-|+...|+ ||..+|....
T Consensus 15 ~~~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 51 (96)
T 3rjp_A 15 NRGDDEISLTKREYDLLNILMTNMNRVMTREELLSNV 51 (96)
T ss_dssp EETTEEEECCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred EECCEEEEcCHHHHHHHHHHHhCCCeeEcHHHHHHHH
Confidence 34688999999999999999999997 6788888764
No 265
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=50.13 E-value=69 Score=25.35 Aligned_cols=68 Identities=9% Similarity=0.111 Sum_probs=49.4
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH--HHHhcCCccHHHHHhhcc
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKSN 219 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~--fI~~rGRVSi~eLa~~sN 219 (243)
+...+-++|..+|+++.- |.--+..|.|..+--+.|.|=|-|++.+..+.. +++.-| +|+.++....+
T Consensus 3 ~~~tI~evA~~~Gvs~~t----LR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G-~sl~~I~~~l~ 72 (146)
T 3hh0_A 3 LAWLISEFASVGDVTVRA----LRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLG-FSLGEIQNIIL 72 (146)
T ss_dssp CCBCHHHHHHHHTCCHHH----HHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHT
T ss_pred CCCcHHHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 456789999999997654 556788899998855556677779999987754 333334 78887766544
No 266
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=49.97 E-value=18 Score=28.50 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=27.4
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
+...+||...|++.+-+-.-++.|.++|.|.
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 4679999999999988888899999998775
No 267
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=49.51 E-value=46 Score=25.22 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=47.3
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeee-C-CCCeEEEcHHHHHHHHHHH
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMD-D-RGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViD-D-RGKFIYIS~eEl~aVA~fI 203 (243)
.-+.+-+||...+|.-.-+-.-|..|+..|-|.=..+ | || |+-||++=...+.+.+
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~-~v~LT~~G~~~l~~~~ 92 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRG-HASLTQEGAALAAQLF 92 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCE-EEEECHHHHHHHHHHC
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCce-eEEECHHHHHHHHHhc
Confidence 4579999999999999999999999999999985555 3 77 5999999888877654
No 268
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=48.60 E-value=1e+02 Score=25.15 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=50.5
Q ss_pred HHHHHHHhcC--ccchHHHHHHcC-CChHHHHHHHHHHHhcCCcceeeeC-----CC---CeEEEcHHHHHHHHHH
Q 026130 138 DFVEYIKKHK--CIPLEDLAAEFK-LRTQECINRITSLENMGRLSGVMDD-----RG---KYIYISQAEMKAVADY 202 (243)
Q Consensus 138 ~Fi~yIK~~K--vV~LEdLA~~F~-lrtqd~I~RIq~Le~~g~LtGViDD-----RG---KFIYIS~eEl~aVA~f 202 (243)
..+.+|..+. ...+++|+..++ |+..-|-..|+.|...|.|.=+--+ +| +|..||+.-...+..|
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y 108 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAV 108 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHh
Confidence 3455666664 478899999999 9888888899999999999855322 34 3889999988887664
No 269
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=48.24 E-value=49 Score=21.74 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
+...|..+...+=+...+||...|++ +..|.+|. +|+. .+|...+..+|.++. |++.+|.
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e--------------~g~~-~~~~~~l~~la~~l~----~~~~~l~ 70 (77)
T 2b5a_A 11 FGRTLKKIRTQKGVSQEELADLAGLH-RTYISEVE--------------RGDR-NISLINIHKICAALD----IPASTFF 70 (77)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH--------------TTCS-CCBHHHHHHHHHHTT----CCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCC-HHHHHHHH--------------CCCC-CCCHHHHHHHHHHhC----cCHHHHh
Confidence 34444445555556789999999996 45555554 2333 378899999999874 7777775
Q ss_pred h
Q 026130 216 S 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 71 ~ 71 (77)
T 2b5a_A 71 R 71 (77)
T ss_dssp H
T ss_pred c
Confidence 4
No 270
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=48.14 E-value=21 Score=29.46 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=32.0
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||...|++.+-+-.-++.|...|.|. -.|+.|+|.
T Consensus 218 lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 4679999999998888888899999987664 456667764
No 271
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=48.08 E-value=19 Score=26.13 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=27.5
Q ss_pred CeEEEcHHHHHHHHHHHHhcCCccHHHHHhh
Q 026130 187 KYIYISQAEMKAVADYIKRQGRVSISHLASK 217 (243)
Q Consensus 187 KFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~ 217 (243)
--|+|+++-+..|-.+...+| +|.++|++.
T Consensus 12 isI~Lpdel~~~Ld~la~~~g-~srselire 41 (80)
T 2k5j_A 12 ILLDLSNEVIKQLDDLEVQRN-LPRADLLRE 41 (80)
T ss_dssp EEEEECHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHhC-CCHHHHHHH
Confidence 569999999999999999999 699999874
No 272
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=47.74 E-value=3.9 Score=36.57 Aligned_cols=54 Identities=7% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcc-eeeeCCCCeEEEcHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLS-GVMDDRGKYIYISQAE 195 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt-GViDDRGKFIYIS~eE 195 (243)
..++.+|..+.-+...+||..||++..-+-.-|+.|++.|.|. -+ . .||+|+.=
T Consensus 23 ~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~---~--gi~LT~~G 77 (345)
T 2o0m_A 23 FQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSK---S--GMTLTERG 77 (345)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---c--ceEEcHHH
Confidence 4567778788889999999999999999999999999999885 22 2 26776543
No 273
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=47.49 E-value=41 Score=28.16 Aligned_cols=69 Identities=7% Similarity=0.229 Sum_probs=52.4
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee-eCCCCeEEEcHHHHHHHH--HHHHhcCCccHHHHHhhcc
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM-DDRGKYIYISQAEMKAVA--DYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi-DDRGKFIYIS~eEl~aVA--~fI~~rGRVSi~eLa~~sN 219 (243)
.+...+.++|..+|+++. .|.--+..|.|...- |+.|-|=|-|++.+..+. .+++.-| +|+.++....+
T Consensus 3 ~~~~~i~e~a~~~gvs~~----tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g-~~l~~i~~~~~ 74 (278)
T 1r8e_A 3 ESYYSIGEVSKLANVSIK----ALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIG-TPLEEMKKAQD 74 (278)
T ss_dssp CCEEEHHHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTT-CCHHHHHHHTT
T ss_pred CCcEeHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 456788999999999765 455678889998875 577778888998887654 4455666 89888877654
No 274
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=47.03 E-value=9.4 Score=33.58 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.3
Q ss_pred CccchHHHHHHc----CCChHHHHHHHHHHHhcCCcceeeeCCCC-eEEEcHHHHHHH----HHHHHhcCCccHHHHHhh
Q 026130 147 KCIPLEDLAAEF----KLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMKAV----ADYIKRQGRVSISHLASK 217 (243)
Q Consensus 147 KvV~LEdLA~~F----~lrtqd~I~RIq~Le~~g~LtGViDDRGK-FIYIS~eEl~aV----A~fI~~rGRVSi~eLa~~ 217 (243)
=++.|.||-..| -+++.|++.-|+.|..- .=..|++=.|+ ||--.|.||... -.++...|.||.++|...
T Consensus 112 Gli~l~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~ 190 (233)
T 1u5t_A 112 GVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKAN 190 (233)
T ss_dssp SCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEETTEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHH
T ss_pred CeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHH
Confidence 489999999998 58999999999999887 44557774455 666667666543 344566899999999854
No 275
>2lky_A Uncharacterized protein; infectious disease, tuberculosis, DUF proteins, ssgcid, STRU genomics; NMR {Mycobacterium smegmatis str}
Probab=46.88 E-value=7.6 Score=30.95 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=35.5
Q ss_pred EcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccchhhhhh
Q 026130 191 ISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETKAQFVED 233 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rGRVSi~eLa~~sN~lI~L~p~~~~~~~ 233 (243)
+|++|+..||..+...|.|+-.++....+++.+=.|...+.+.
T Consensus 41 Ltdeev~~Va~~L~~~~~i~~~dI~~~I~~vt~~~Ps~eDI~R 83 (112)
T 2lky_A 41 LTNDEIKAIAEDLEKRAHFDHIDIGVLITQMTDEMPREEDIER 83 (112)
T ss_dssp CCHHHHHHHHHHHHHHCCCSCCCSHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCHHHHHH
Confidence 6888999999888888888888888888888888888776543
No 276
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=45.68 E-value=45 Score=22.82 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
-..|.++...+=+...+||...|++ ...|.+|.. |+-..+|.+-+..+|.++. |++.+|..
T Consensus 12 ~~~ik~~R~~~gltq~elA~~~gis-~~~is~~E~--------------G~~~~p~~~~l~~ia~~l~----v~~~~l~~ 72 (78)
T 3qq6_A 12 GQRIKQYRKEKGYSLSELAEKAGVA-KSYLSSIER--------------NLQTNPSIQFLEKVSAVLD----VSVHTLLD 72 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHHT--------------TSCCCCBHHHHHHHHHHHT----CCHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc--------------CCCCCCCHHHHHHHHHHHC----cCHHHHhC
Confidence 3556666677778899999999995 445555532 4334579999999999985 77777765
Q ss_pred h
Q 026130 217 K 217 (243)
Q Consensus 217 ~ 217 (243)
.
T Consensus 73 ~ 73 (78)
T 3qq6_A 73 E 73 (78)
T ss_dssp S
T ss_pred C
Confidence 3
No 277
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=45.52 E-value=59 Score=25.27 Aligned_cols=76 Identities=8% Similarity=0.155 Sum_probs=54.0
Q ss_pred HHHHHHh-cCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHH
Q 026130 139 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSIS 212 (243)
Q Consensus 139 Fi~yIK~-~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~ 212 (243)
.++++.. ..-+..+||...+ +++..-|-.-|+.|...|.|.-+-.+.|...|-.. +.-...
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~-------------~~~H~H 93 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV-------------TSDHYH 93 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC-------------CCCEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC-------------CCCcce
Confidence 4444443 4568899999888 89998888999999999999999888888777532 100111
Q ss_pred HHHhhcccccccccc
Q 026130 213 HLASKSNQFIDLETK 227 (243)
Q Consensus 213 eLa~~sN~lI~L~p~ 227 (243)
=+=..|++++.+...
T Consensus 94 liC~~Cg~v~~~~~~ 108 (145)
T 2fe3_A 94 AICENCGKIVDFHYP 108 (145)
T ss_dssp EEETTTCCEEECCCC
T ss_pred EEECCCCCEEEecCC
Confidence 123678888888643
No 278
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=44.67 E-value=22 Score=30.14 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=57.5
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH-----HHhcCCccH
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY-----IKRQGRVSI 211 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f-----I~~rGRVSi 211 (243)
..+.++.. ..-+.+.|||..+||+..-|-..++.|...|-|.- |+ |+| ++++.=+.--..+ +....+-.+
T Consensus 18 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~--~~-~~Y-~Lg~~~~~l~~~~~~~~~l~~~a~p~l 93 (257)
T 2g7u_A 18 AVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG--SG-GRW-SLTPRVLSIGQHYSESHALIEAAMPRL 93 (257)
T ss_dssp HHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ET-TEE-EECGGGHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CC-CEE-EEcHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44556643 45688999999999999999999999999999986 33 555 6777633221111 222333345
Q ss_pred HHHHhhccccccccc
Q 026130 212 SHLASKSNQFIDLET 226 (243)
Q Consensus 212 ~eLa~~sN~lI~L~p 226 (243)
.+|+..+|.-+.|.-
T Consensus 94 ~~L~~~~~etv~L~v 108 (257)
T 2g7u_A 94 LEVAEKTQESASLGV 108 (257)
T ss_dssp HHHHHHHSSCEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 677777776666544
No 279
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=44.11 E-value=38 Score=29.74 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=52.4
Q ss_pred CccchHHHHHHc---------CCChHHHHHHHHHHHhcCCcceeeeCCCC-eEEEcHHHHH----HHHHHHHhcCCccHH
Q 026130 147 KCIPLEDLAAEF---------KLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMK----AVADYIKRQGRVSIS 212 (243)
Q Consensus 147 KvV~LEdLA~~F---------~lrtqd~I~RIq~Le~~g~LtGViDDRGK-FIYIS~eEl~----aVA~fI~~rGRVSi~ 212 (243)
=++.|.||-..| -++++|++.-|+.|..-|.=..|+.=.|+ ||--.|.|+. .|..++...|.||.+
T Consensus 93 Gli~L~el~~~~~r~Rg~~~~~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLela~~~g~vt~~ 172 (234)
T 3cuq_A 93 GLITLEELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVS 172 (234)
T ss_dssp SEEEHHHHHHHHHHTTTTCCSSCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHHHTTTSEECHH
T ss_pred CeeEHHHHHHHHHHhcCCccCccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHH
Confidence 588888887766 57999999999999999864566652365 5555564443 344566678999999
Q ss_pred HHHhh
Q 026130 213 HLASK 217 (243)
Q Consensus 213 eLa~~ 217 (243)
+|...
T Consensus 173 ~L~~~ 177 (234)
T 3cuq_A 173 EIKAS 177 (234)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99864
No 280
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=43.91 E-value=22 Score=28.60 Aligned_cols=40 Identities=20% Similarity=0.332 Sum_probs=31.6
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||...|++.+-+-.-++.|..+|.|. ++ +| .|+|.
T Consensus 187 ~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~--~~-~~-~i~I~ 226 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISKTLNELQDNGLIE--LH-RK-EILIP 226 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE--EE-TT-EEEES
T ss_pred CCHHHHHHHhCCChhHHHHHHHHHHHCCCEE--ec-CC-EEEEe
Confidence 5689999999999988888899999998875 22 44 45554
No 281
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=43.88 E-value=49 Score=24.07 Aligned_cols=34 Identities=9% Similarity=0.282 Sum_probs=19.7
Q ss_pred EcHHHHHHHHHHH--HhcCCccHHHHHhhccccccc
Q 026130 191 ISQAEMKAVADYI--KRQGRVSISHLASKSNQFIDL 224 (243)
Q Consensus 191 IS~eEl~aVA~fI--~~rGRVSi~eLa~~sN~lI~L 224 (243)
+|++++..+-..+ ...|.||..++......+...
T Consensus 129 ~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~~ 164 (166)
T 3akb_A 129 VPEDLARQAAAALDTDGDGKVGETEIVPAFARYFTV 164 (166)
T ss_dssp CCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhcC
Confidence 3444444444443 335778888877776665543
No 282
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=43.61 E-value=53 Score=30.85 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhc
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENM 175 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~ 175 (243)
....++++-.++-+.+.+||..||+++--+-+-|+.|-..
T Consensus 20 ~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI~~In~~ 59 (485)
T 3sqn_A 20 QIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQ 59 (485)
T ss_dssp HHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 4566777766888999999999999999999988888664
No 283
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=43.55 E-value=1e+02 Score=23.27 Aligned_cols=60 Identities=13% Similarity=0.174 Sum_probs=45.1
Q ss_pred cCccchHHHHHHc------CCChHHHHHHHHHHHhcCCcceeeeC--CC---CeEEEcHHHHHHHHHHHHh
Q 026130 146 HKCIPLEDLAAEF------KLRTQECINRITSLENMGRLSGVMDD--RG---KYIYISQAEMKAVADYIKR 205 (243)
Q Consensus 146 ~KvV~LEdLA~~F------~lrtqd~I~RIq~Le~~g~LtGViDD--RG---KFIYIS~eEl~aVA~fI~~ 205 (243)
..=..--+|+..+ +++..-+-.-+..|++.|-|+...+. .| ||..||+.-...+..++..
T Consensus 24 ~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~ 94 (116)
T 3hhh_A 24 RKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQR 94 (116)
T ss_dssp HSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHH
Confidence 3334445666665 78999999999999999999998742 22 4666999999988888764
No 284
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=43.19 E-value=20 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.321 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHH-HHHHHHHHhcCCccH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEM-KAVADYIKRQGRVSI 211 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl-~aVA~fI~~rGRVSi 211 (243)
...|..|+....++.+++|+..+|+.+ ++...| +|+++++ -.|++++-.-.|..+
T Consensus 113 A~~f~~yL~~~~L~t~eev~~~L~~~~--------------------~~~~~f-~v~~edYLlGL~DltGEL~R~av 168 (240)
T 1j1j_A 113 LAAFVVYLETETLVTREAVTEILGIEP--------------------DREKGF-HLDVEDYLSGVLILASELSRLSV 168 (240)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTCCC--------------------SSSSSS-CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhCCCc--------------------cccccC-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999754 233333 6777765 556666555444433
No 285
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=42.81 E-value=30 Score=20.39 Aligned_cols=38 Identities=8% Similarity=0.055 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcC
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMG 176 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g 176 (243)
..++.+.... +...++|..||++..-|-..|......|
T Consensus 12 ~~i~~~~~~g--~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 12 AQLDVMKLLN--VSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHHTT--CCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 3455554332 4688999999999887777776655544
No 286
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=42.60 E-value=45 Score=23.69 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=37.8
Q ss_pred HHhcCccchHHHHHHcCCChHHHHHHHHHHHhcC--CcceeeeCCCCeEEEcHHHHHH
Q 026130 143 IKKHKCIPLEDLAAEFKLRTQECINRITSLENMG--RLSGVMDDRGKYIYISQAEMKA 198 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g--~LtGViDDRGKFIYIS~eEl~a 198 (243)
|-.+.++.+++.|.-||+.. +.|-.|..+| ....|.+ |+=++|...+++.
T Consensus 11 ~~~K~~LTi~EaAeylgIg~----~~l~~L~~~~~~~~~~~~i--G~~~lI~r~~fe~ 62 (70)
T 1y6u_A 11 IWERYTLTIEEASKYFRIGE----NKLRRLAEENKNANWLIMN--GNRIQIKRKQFEK 62 (70)
T ss_dssp TTTSSEEEHHHHHHHTCSCH----HHHHHHHHHCTTCSSEEEE--TTEEEEESHHHHH
T ss_pred ccccceeCHHHHHHHHCcCH----HHHHHHHHcCCCCCcEEEe--CCEEEEEHHHHHH
Confidence 34678899999999999975 4566777776 5556666 7778888877764
No 287
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=42.36 E-value=69 Score=20.84 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=40.6
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHhh
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASK 217 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~ 217 (243)
.-|..+...+=+...+||...|++. ..|.++. +|+.. +|.+.+..+|.++. |++..|..-
T Consensus 8 ~~l~~~r~~~gls~~~lA~~~gis~-~~i~~~e--------------~g~~~-~~~~~l~~ia~~l~----~~~~~l~~~ 67 (76)
T 1adr_A 8 ERIRARRKKLKIRQAALGKMVGVSN-VAISQWE--------------RSETE-PNGENLLALSKALQ----CSPDYLLKG 67 (76)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCH-HHHHHHH--------------TTSSC-CCHHHHHHHHHHTT----SCHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHH--------------cCCCC-CCHHHHHHHHHHHC----cCHHHHhcC
Confidence 3344444445567899999999964 4555553 23332 68888999998873 788887654
Q ss_pred c
Q 026130 218 S 218 (243)
Q Consensus 218 s 218 (243)
.
T Consensus 68 ~ 68 (76)
T 1adr_A 68 D 68 (76)
T ss_dssp C
T ss_pred C
Confidence 3
No 288
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=42.32 E-value=25 Score=26.48 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
......++||..++ +.+.|||..||++. .+|.|. | ..+ .=+||++=...|...
T Consensus 7 ~R~~~I~~~l~~~~-~ti~dlA~~~gVS~-~TVsR~--L----------~~~--~~~Vs~~tr~rV~~a 59 (93)
T 2l0k_A 7 ERTIKIGKYIVETK-KTVRVIAKEFGVSK-STVHKD--L----------TER--LPEINPDLANEVKEI 59 (93)
T ss_dssp HHHHHHHHHHHHHC-CCHHHHHHHHTSCH-HHHHHH--H----------TTH--HHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHCCCH-HHHHHH--H----------cCC--CCCCCHHHHHHHHHH
Confidence 34577888998888 89999999999975 455553 1 111 013788777777665
No 289
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=42.17 E-value=29 Score=29.95 Aligned_cols=86 Identities=8% Similarity=0.178 Sum_probs=57.2
Q ss_pred HHHHHHHhc-CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc-----cH
Q 026130 138 DFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SI 211 (243)
Q Consensus 138 ~Fi~yIK~~-KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRV-----Si 211 (243)
..++++-.+ .-+.|.|||...||+..-|-.-++.|...|-|.= |..|+| .+++.=+.--..++....-+ .+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~--~~~~~Y-~LG~~~~~lg~~~~~~~~l~~~a~p~l 110 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR--SADGTL-RIGPHSLRWANGFLSHLDIVSTFNDHL 110 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE--CTTSEE-EECTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CCCCcE-EehHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 456666554 4689999999999999999999999999999974 555765 47776444333444333222 23
Q ss_pred HHHHhhccccccccc
Q 026130 212 SHLASKSNQFIDLET 226 (243)
Q Consensus 212 ~eLa~~sN~lI~L~p 226 (243)
.+|+..+|..+.|.-
T Consensus 111 ~~L~~~~~etv~L~v 125 (275)
T 3mq0_A 111 AQRHDLDPYTVTLTV 125 (275)
T ss_dssp HTCGGGTTSEEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 466667666665554
No 290
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=41.70 E-value=38 Score=24.56 Aligned_cols=56 Identities=7% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
+-.+.+.+ =+...+||...|++. .+|.+|.. |+. +|.+-+..+|+++. |++.+|..
T Consensus 29 Lk~lR~~~-glTq~eLA~~~GiS~-~tis~iE~--------------G~~--~s~~~l~kIa~~L~----v~~~~L~~ 84 (88)
T 3t76_A 29 LWKLLIDR-DMKKGELREAVGVSK-STFAKLGK--------------NEN--VSLTVLLAICEYLN----CDFGDIIE 84 (88)
T ss_dssp HHHHHHHT-TCCHHHHHHHHTCCH-HHHHHHHT--------------TCC--CCHHHHHHHHHHHT----CCGGGTCE
T ss_pred HHHHHHHc-CCCHHHHHHHHCcCH-HHHHHHHc--------------CCC--cCHHHHHHHHHHHC----cCHHHHhc
Confidence 33344444 457899999999955 56666642 454 69999999999985 77777653
No 291
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=41.42 E-value=56 Score=23.74 Aligned_cols=73 Identities=14% Similarity=0.257 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+...|..+...+=+...+||...|++. ..|.+|.. |+. .+|.+-+..+|.++. |++.+|
T Consensus 28 ~~g~~l~~~R~~~glsq~~lA~~~gis~-~~is~~E~--------------g~~-~~~~~~l~~la~~l~----v~~~~l 87 (117)
T 3f52_A 28 ALGAALRSFRADKGVTLRELAEASRVSP-GYLSELER--------------GRK-EVSSELLASVCHALG----ASVADV 87 (117)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHTTSCH-HHHHHHHT--------------TSS-CCCHHHHHHHHHHHT----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHC--------------CCC-CCCHHHHHHHHHHhC----CCHHHH
Confidence 4556666666666678999999999954 45565542 443 479999999999884 899888
Q ss_pred Hhhcccccccccc
Q 026130 215 ASKSNQFIDLETK 227 (243)
Q Consensus 215 a~~sN~lI~L~p~ 227 (243)
......-..+...
T Consensus 88 ~~~~~~~~~~~~~ 100 (117)
T 3f52_A 88 LIEAAGSMALQAA 100 (117)
T ss_dssp HHHHHHHHCCC--
T ss_pred Hhccccccccchh
Confidence 8776665555443
No 292
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=41.11 E-value=23 Score=25.48 Aligned_cols=35 Identities=11% Similarity=0.270 Sum_probs=30.5
Q ss_pred CCCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 184 DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 184 DRGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
-.|+-|.+|+.|+.-++-|+...|+ ||..+|....
T Consensus 22 ~~~~~i~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~v 57 (102)
T 3zq7_A 22 RGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQV 57 (102)
T ss_dssp ETTEEECCCHHHHHHHHHHHHTTTCEEEHHHHHHHH
T ss_pred ECCEEEEcCHHHHHHHHHHHHCCCeeECHHHHHHHh
Confidence 3688999999999999999999998 5778888764
No 293
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=40.84 E-value=20 Score=30.55 Aligned_cols=85 Identities=12% Similarity=0.236 Sum_probs=57.1
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcC-----CccH
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQG-----RVSI 211 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rG-----RVSi 211 (243)
..++++.. ..-+.+.|||..+||+..-|-.-++.|...|-|.- | .|+| ++++.=+.--..+..... +--+
T Consensus 25 ~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~--~-~~~Y-~Lg~~~~~lg~~~~~~~~l~~~a~p~l 100 (265)
T 2ia2_A 25 AVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVAT--D-GSAF-WLTPRVLELGYSYLSSLSLPEVAQPHL 100 (265)
T ss_dssp HHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE--S-SSEE-EECGGGGGTTHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe--c-CCEE-EEcHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45566653 46789999999999999999999999999999976 3 3666 577753332222332222 2224
Q ss_pred HHHHhhccccccccc
Q 026130 212 SHLASKSNQFIDLET 226 (243)
Q Consensus 212 ~eLa~~sN~lI~L~p 226 (243)
.+|+..++..+.|.-
T Consensus 101 ~~L~~~~getv~L~v 115 (265)
T 2ia2_A 101 EKLSHKVHESSSVSI 115 (265)
T ss_dssp HHHHHHHTSEEEEEE
T ss_pred HHHHHHHCCEEEEEE
Confidence 577777777666654
No 294
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=40.66 E-value=17 Score=33.04 Aligned_cols=48 Identities=8% Similarity=0.276 Sum_probs=27.1
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCC-eEEEcHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMKAVAD 201 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGK-FIYIS~eEl~aVA~ 201 (243)
.+.|+|||..-|+++.|||..++. .|.|. . ..|. .|.|+++-++...+
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~---l~~l~--~-~kg~~~i~~~~~~i~~~~~ 260 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQY---LNLIN--Y-YKGQYILTLSEDIVDGHER 260 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHH---TTCCC--B-CSSSBBC------------
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHH---CCcEE--E-ECCeEEEEECHHHHHHHHH
Confidence 689999999999999999876655 56653 2 2454 46678765555443
No 295
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=40.63 E-value=44 Score=27.01 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=38.8
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
.+.|.+.+||..+|++..-+..-++.|...|-|..+--..|=|.-
T Consensus 42 ~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 86 (159)
T 3lwf_A 42 DGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVL 86 (159)
T ss_dssp SCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEE
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEe
Confidence 468999999999999999999999999999999888665555653
No 296
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=40.44 E-value=21 Score=22.48 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=28.5
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHH
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYI 203 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI 203 (243)
-+.+||.++|++...+++.++++ |. .+ ..- =.||+++...|-.++
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~---g~-~k--~~~---s~l~~~~~~~l~~~~ 48 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADA---GI-RK--SAD---DSVSAQEKQTLIDHL 48 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHH---TS-CC--SSS---SCEETTGGGHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHHHHc---CC-CC--CCC---CcCCHHHHHHHHHHh
Confidence 46789999999999988777654 43 11 110 115666666665543
No 297
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=40.12 E-value=13 Score=25.25 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.9
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 63 ~Lsd~ei~~l~~yl~~ 78 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILS 78 (80)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999985
No 298
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=40.11 E-value=35 Score=25.05 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHH
Q 026130 133 RDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSIS 212 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~ 212 (243)
...+...|..+...+=+...+||...|++ +..|.+|. +|+. .+|.+-+..+|.++. |++.
T Consensus 19 ~~~~g~~lr~~R~~~gltq~elA~~~gis-~~~is~~E--------------~G~~-~p~~~~l~~ia~~l~----v~~~ 78 (114)
T 3vk0_A 19 RAVLAYNMRLFRVNKGWSQEELARQCGLD-RTYVSAVE--------------RKRW-NIALSNIEKMAAALG----VAAY 78 (114)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHT--------------TTCC-CCCHHHHHHHHHHHT----SCHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH--------------cCCC-CCCHHHHHHHHHHhC----CCHH
Confidence 34566666666666777899999999995 45566654 3443 379999999999984 7888
Q ss_pred HHHhhcccc
Q 026130 213 HLASKSNQF 221 (243)
Q Consensus 213 eLa~~sN~l 221 (243)
+|.......
T Consensus 79 ~l~~~~~~~ 87 (114)
T 3vk0_A 79 QLLLPPQER 87 (114)
T ss_dssp HHTSCHHHH
T ss_pred HHhCCccch
Confidence 886554443
No 299
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=39.83 E-value=17 Score=26.38 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=19.5
Q ss_pred HHHHHHHHHhc------CCccHHHHHhhcc
Q 026130 196 MKAVADYIKRQ------GRVSISHLASKSN 219 (243)
Q Consensus 196 l~aVA~fI~~r------GRVSi~eLa~~sN 219 (243)
...|-+||+.. |.+|+.||+...+
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lg 35 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAG 35 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHC
Confidence 45677777777 9999999999875
No 300
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=39.65 E-value=15 Score=25.09 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=18.4
Q ss_pred eeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 180 GVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 180 GViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
|+|-.-+. -+|++|+.+|+.||...
T Consensus 53 ~~Mp~~~~--~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 53 GAMPAYDG--RADREDLVKAIEYMLST 77 (78)
T ss_dssp TTBCCCBT--TBCHHHHHHHHHHHHTT
T ss_pred CCCCCCCC--CCCHHHHHHHHHHHHhh
Confidence 45554332 27999999999999853
No 301
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=39.35 E-value=56 Score=21.87 Aligned_cols=61 Identities=10% Similarity=0.061 Sum_probs=41.4
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHhhc
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKS 218 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~s 218 (243)
.|..+...+=+...+||...|++ ...|++|. +|+. .+|.+-+..+|.++. |++.+|....
T Consensus 6 ~lk~~r~~~glsq~~lA~~~gis-~~~i~~~e--------------~g~~-~p~~~~l~~ia~~l~----v~~~~l~~~~ 65 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMGIS-RQQLCNIE--------------QSET-APVVVKYIAFLRSKG----VDLNALFDRI 65 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHH--------------TCCS-CCHHHHHHHHHHHTT----CCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHhCCC-HHHHHHHH--------------cCCC-CCCHHHHHHHHHHhC----cCHHHHhCcc
Confidence 34444444556788999999996 45556554 2443 378888999998873 7888876554
Q ss_pred c
Q 026130 219 N 219 (243)
Q Consensus 219 N 219 (243)
+
T Consensus 66 ~ 66 (77)
T 2k9q_A 66 I 66 (77)
T ss_dssp S
T ss_pred c
Confidence 3
No 302
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=39.22 E-value=1.1e+02 Score=25.06 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHhcCccchHH----H--------HHHcC--CChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHH
Q 026130 132 DRDLLADFVEYIKKHKCIPLED----L--------AAEFK--LRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK 197 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~KvV~LEd----L--------A~~F~--lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~ 197 (243)
...+|.++++++....-..+.+ + |..+| |+..++..-|.+|.....-.===.-|=.+|.||..||+
T Consensus 111 ~~~~l~ell~~l~~~~~~~~~~~~~~~~~~~ACr~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l~~~ele 190 (197)
T 3kdg_A 111 EAELIEEIIQQVLDSKNIDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHHSTYEME 190 (197)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhHhhccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEeCHHHHH
Confidence 4668999999987654333322 2 34565 88899999999999876543222237779999999988
Q ss_pred HH
Q 026130 198 AV 199 (243)
Q Consensus 198 aV 199 (243)
..
T Consensus 191 k~ 192 (197)
T 3kdg_A 191 KM 192 (197)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 303
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=39.07 E-value=18 Score=31.22 Aligned_cols=27 Identities=11% Similarity=0.299 Sum_probs=24.5
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHH
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITS 171 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~ 171 (243)
.+|.|.|.+||.+||-+-+++|..+..
T Consensus 132 ~~Ky~~lg~ls~~~Gwk~~~vv~~le~ 158 (199)
T 4b6a_O 132 GRKYTTLGKLSTSVGWKYEDVVAKLEA 158 (199)
T ss_dssp TCCEEEHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCeEEhhhhHHHhCccHHHHHHHHHH
Confidence 569999999999999999999988854
No 304
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=38.96 E-value=40 Score=28.08 Aligned_cols=58 Identities=21% Similarity=0.275 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCccchHHHHHH-----cCCChHHHHHH-HHHHHhcCCcceeeeCCCCe-EEEcHHHH
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAE-----FKLRTQECINR-ITSLENMGRLSGVMDDRGKY-IYISQAEM 196 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~-----F~lrtqd~I~R-Iq~Le~~g~LtGViDDRGKF-IYIS~eEl 196 (243)
..+..+...|..+.|-.=+||+.. |.+ ||-+|+| |++| .|.=|-+..|+| +|.-|.+.
T Consensus 20 ~R~~~I~~iI~~~~I~tQeEL~~~L~~~Gi~v-TQATlSRDikEL----~lvKv~~~~G~~~~Y~lp~~~ 84 (170)
T 3lap_A 20 GRQARIVAILSSAQVRSQNELAALLAAEGIEV-TQATLSRDLEEL----GAVKLRGADGGTGIYVVPEDG 84 (170)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCC-CHHHHHHHHHHH----TCEEECCTTCTTCEEECCC--
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCc-CchhHHHHHHHc----CcEEeecCCCCEEEEEECccc
Confidence 356788888999999999988765 445 9999998 5555 456688889999 99887664
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.92 E-value=68 Score=24.56 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=43.6
Q ss_pred HHHHHHHhc--CccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
..++++..+ .-+..++|...+ +++..-|-.-|+.|...|.|.-+-.+.|...|-
T Consensus 22 ~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 22 KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 445566554 478889998888 898888889999999999999988777876664
No 306
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=38.86 E-value=44 Score=29.10 Aligned_cols=49 Identities=18% Similarity=0.248 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCC
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGK 187 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGK 187 (243)
.++.-.+..+-.-+-|.+.+||...|++.+++...|+.|- .=++|+.|+
T Consensus 22 ~~~~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~-----~~~~D~~G~ 70 (220)
T 3f2g_A 22 DLLVPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT-----STEYDKDGN 70 (220)
T ss_dssp HHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT-----TCEECTTSC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC-----cEEECCCCC
Confidence 4455555556689999999999999999999999998884 124566564
No 307
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.57 E-value=52 Score=22.29 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=36.9
Q ss_pred HHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 141 EYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 141 ~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+++.+. ...+||..+|++ +..|+++.. |+. ++.+-+..+|.++. |.||+.+|
T Consensus 6 ~~r~~~g--sq~~lA~~lgvs-~~~is~~e~--------------g~~--~p~~~l~~ia~~l~--~~v~~~~l 58 (79)
T 3bd1_A 6 IAINKLG--SVSALAASLGVR-QSAISNWRA--------------RGR--VPAERCIDIERVTN--GAVICREL 58 (79)
T ss_dssp HHHHHHS--SHHHHHHHHTCC-HHHHHHHHH--------------HTC--CCGGGHHHHHHHTT--TSSCHHHH
T ss_pred HHHHHhC--CHHHHHHHHCCC-HHHHHHHHH--------------CCC--CCHHHHHHHHHHHC--CCCcHHHh
Confidence 3445555 679999999995 556666543 333 33566888888865 78999888
No 308
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=38.48 E-value=6.6 Score=34.36 Aligned_cols=51 Identities=18% Similarity=0.319 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc---CccchHHHHHHc-CCChHHHHHHHHHHHhcCCcceeeeCC
Q 026130 135 LLADFVEYIKKH---KCIPLEDLAAEF-KLRTQECINRITSLENMGRLSGVMDDR 185 (243)
Q Consensus 135 lL~~Fi~yIK~~---KvV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~LtGViDDR 185 (243)
+-+..++||+.. .=|.+.+|+..| +++..++.+-|..|..+|.|-==+||.
T Consensus 208 ~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~ 262 (270)
T 2pi2_A 208 AQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 262 (270)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEecccccc
Confidence 345677788876 578888999999 799999999999999999987777763
No 309
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.07 E-value=1e+02 Score=24.16 Aligned_cols=53 Identities=11% Similarity=0.126 Sum_probs=42.6
Q ss_pred HHHHHHh-cCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 139 FVEYIKK-HKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 139 Fi~yIK~-~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
.++++.. ..-+..++|...+ +++..-|-.-|+.|...|.|.-+-.+.|...|-
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 3444444 3567888888877 788888889999999999999998888888785
No 310
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=37.71 E-value=9.3 Score=29.70 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=24.5
Q ss_pred hcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHhhccccc
Q 026130 174 NMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFI 222 (243)
Q Consensus 174 ~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~sN~lI 222 (243)
....+..|+|+.|+++ |=||.++|.++-|.++
T Consensus 113 ~~~~~lpVVd~~g~l~-----------------GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 113 VDESFLPVVDAEGIFQ-----------------GIITRKSILKAVNALL 144 (156)
T ss_dssp TTSSEEEEECTTSBEE-----------------EEEEHHHHHHHHHHHS
T ss_pred HHcCCeEEEecCCEEE-----------------EEEEHHHHHHHHHHHh
Confidence 3445788999999998 7777778777776665
No 311
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.62 E-value=1.4e+02 Score=23.55 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=48.4
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH--HHHhcCCccHHHHHhhcc
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKSN 219 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~--fI~~rGRVSi~eLa~~sN 219 (243)
...+.++|..+|+++.- |.--+..|.|..+.-+.|.|=|-|++.+..+.. +++.- -+|+.++....+
T Consensus 16 ~~~I~evA~~~gvs~~t----LR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~-G~sL~eIk~~l~ 84 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQ----IRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNT-GMPIQKIKQFID 84 (148)
T ss_dssp CBCHHHHHHHTTCCHHH----HHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTT-TCCHHHHHHHHH
T ss_pred ceeHHHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 57899999999997644 556688999986655567777789999987653 33333 478777665543
No 312
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=37.58 E-value=13 Score=28.67 Aligned_cols=31 Identities=55% Similarity=1.014 Sum_probs=21.3
Q ss_pred eeeCCCC---eEE--EcHHHHHHH----HHHHHhcC----CccH
Q 026130 181 VMDDRGK---YIY--ISQAEMKAV----ADYIKRQG----RVSI 211 (243)
Q Consensus 181 ViDDRGK---FIY--IS~eEl~aV----A~fI~~rG----RVSi 211 (243)
-|||.|| |-| -|+.||+.| -+||++.| ||||
T Consensus 9 niddngknfdytytvtteselqkvlnelmdyikkqgakrvrisi 52 (106)
T 1qys_A 9 NIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISI 52 (106)
T ss_dssp EEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred EecCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 4899997 223 466777655 67999887 5665
No 313
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=37.49 E-value=92 Score=20.88 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+...|..+...+=+...+||...|++. ..|.+|.. |+ ..+|.+.+..+|.++. |++.+|
T Consensus 11 ~~g~~lk~~R~~~glsq~~lA~~~gis~-~~i~~~e~--------------g~-~~~~~~~l~~ia~~l~----v~~~~l 70 (82)
T 3s8q_A 11 KVSFVIKKIRLEKGMTQEDLAYKSNLDR-TYISGIER--------------NS-RNLTIKSLELIMKGLE----VSDVVF 70 (82)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHHT--------------TC-CCCBHHHHHHHHHHTT----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCH-HHHHHHHC--------------CC-CCCCHHHHHHHHHHHC----cCHHHH
Confidence 3555566666667778999999999954 45555532 33 2468999999999874 788777
Q ss_pred Hhh
Q 026130 215 ASK 217 (243)
Q Consensus 215 a~~ 217 (243)
...
T Consensus 71 ~~~ 73 (82)
T 3s8q_A 71 FEM 73 (82)
T ss_dssp HHH
T ss_pred hcC
Confidence 654
No 314
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=37.45 E-value=67 Score=20.77 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
+...|..+...+=+...+||...|++ ...|++|. +|+ ..+|.+.+..+|.++. |++.+|
T Consensus 14 ~~~~l~~~r~~~g~s~~~lA~~~gis-~~~i~~~e--------------~g~-~~~~~~~l~~l~~~l~----~~~~~l 72 (74)
T 1y7y_A 14 FGQRLRELRTAKGLSQETLAFLSGLD-RSYVGGVE--------------RGQ-RNVSLVNILKLATALD----IEPREL 72 (74)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCC-HHHHHHHH--------------TTC-SCCBHHHHHHHHHHTT----SCGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHH--------------CCC-CCCCHHHHHHHHHHhC----cCHHHH
Confidence 44455555556667789999999996 44555553 244 3478888999888873 555544
No 315
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.19 E-value=74 Score=20.12 Aligned_cols=58 Identities=14% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 138 DFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 138 ~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
..|..+...+=+...+||...|++. ..|.++. .|+. .+|.+.+..+|.++. |++..|.
T Consensus 8 ~~l~~~r~~~g~s~~~lA~~~gis~-~~i~~~e--------------~g~~-~~~~~~l~~i~~~l~----~~~~~l~ 65 (68)
T 2r1j_L 8 ERIRARRKKLKIRQAALGKMVGVSN-VAISQWE--------------RSET-EPNGENLLALSKALQ----CSPDYLL 65 (68)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHTSCH-HHHHHHH--------------TTSS-CCBHHHHHHHHHHTT----SCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCH-HHHHHHH--------------cCCC-CCCHHHHHHHHHHhC----CCHHHHh
Confidence 3444444445567899999999965 4555553 2332 258888888888873 6666654
No 316
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=37.17 E-value=19 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.314 Sum_probs=25.9
Q ss_pred eEEEcHHHHHHHHHHHHhcC---CccHHHHHhhcc
Q 026130 188 YIYISQAEMKAVADYIKRQG---RVSISHLASKSN 219 (243)
Q Consensus 188 FIYIS~eEl~aVA~fI~~rG---RVSi~eLa~~sN 219 (243)
|+-++.+--..|-.||+..| ++|..+||...+
T Consensus 4 ~~s~~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 4 MLSIYQDQEQRILKFLEELGEGKATTAHDLSGKLG 38 (81)
T ss_dssp --CHHHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 44566666778899999999 999999999877
No 317
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=37.10 E-value=59 Score=26.88 Aligned_cols=49 Identities=18% Similarity=0.244 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhcCC-cceeeeCCCCe-EEEcHHHHHHHHHHHHhcC
Q 026130 159 KLRTQECINRITSLENMGR-LSGVMDDRGKY-IYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~-LtGViDDRGKF-IYIS~eEl~aVA~fI~~rG 207 (243)
||..+|+-.-+..|...|. +.=-+++.|.| |+|..+.+..+--.+...|
T Consensus 8 ~L~~~da~~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~~~~ar~~La~~G 58 (171)
T 1yj7_A 8 GLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNG 58 (171)
T ss_dssp EECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCceEECCCCCEEEEeCHHHHHHHHHHHHHcC
Confidence 5888999999999999985 45677778884 9999999998888888776
No 318
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=37.02 E-value=48 Score=21.92 Aligned_cols=52 Identities=12% Similarity=0.086 Sum_probs=36.4
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
..+=+...+||...|++. ..|.++.. |+. .+|.+.+..+|.++. |++.+|..
T Consensus 18 ~~~glsq~~lA~~~gis~-~~is~~e~--------------g~~-~~~~~~l~~ia~~l~----v~~~~l~~ 69 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNK-TTVSKWCT--------------NDV-QPSLETLFDIAEALN----VDVRELIV 69 (73)
T ss_dssp HHHTCCHHHHHHHTTCCH-HHHHHHHT--------------TSS-CCCHHHHHHHHHHHT----SCGGGGBC
T ss_pred HHcCCCHHHHHHHHCcCH-HHHHHHHc--------------CCC-CCCHHHHHHHHHHHC----cCHHHHhc
Confidence 344456889999999954 45555542 553 379999999999983 67766643
No 319
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=36.63 E-value=66 Score=27.29 Aligned_cols=87 Identities=14% Similarity=0.173 Sum_probs=62.0
Q ss_pred HHHHHHHh-cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCC-CCeEEEcHHHHHHHHHHHHhcC-----Ccc
Q 026130 138 DFVEYIKK-HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDR-GKYIYISQAEMKAVADYIKRQG-----RVS 210 (243)
Q Consensus 138 ~Fi~yIK~-~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDR-GKFIYIS~eEl~aVA~fI~~rG-----RVS 210 (243)
..++++-. ..-+.+.|||..+||+..-|-..++.|...|-|.- |.. |+| ++++.=+.--..+..... +-.
T Consensus 10 ~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~~~Y-~lG~~~~~lg~~~~~~~~l~~~a~p~ 86 (260)
T 3r4k_A 10 TLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGARSY-RLGPQVLRLAALREASVPILSASRRV 86 (260)
T ss_dssp HHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSSSEE-EECTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCCCcE-EcCHHHHHHHHHHHhcCCHHHHHHHH
Confidence 34555554 56789999999999999999999999999999975 544 666 577765544444444333 223
Q ss_pred HHHHHhhcccccccccc
Q 026130 211 ISHLASKSNQFIDLETK 227 (243)
Q Consensus 211 i~eLa~~sN~lI~L~p~ 227 (243)
+.+|+..++..+.|.--
T Consensus 87 l~~L~~~~getv~L~v~ 103 (260)
T 3r4k_A 87 LRELSEDTGETTHLSLL 103 (260)
T ss_dssp HHHHHHHHSSEEEEEEE
T ss_pred HHHHHHHhCCeEEEEEE
Confidence 46888888877766543
No 320
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=36.29 E-value=50 Score=28.32 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=42.1
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc--CCccHHHHHhhcc
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ--GRVSISHLASKSN 219 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r--GRVSi~eLa~~sN 219 (243)
.+.++|..+|+++.- |.-.+..|.|..+--+.|.|=|.|++.+..+.....-+ +-+|+.++....+
T Consensus 2 ~IgevA~~~Gvs~~T----LRyYE~~GLl~p~~R~~~gyR~Y~~~dl~~L~~I~~lr~~~G~sL~eIk~~l~ 69 (222)
T 2dg6_A 2 RLADLSKRSGVSTAT----IKYYLREGLLPPGRQVNATTAEYDEDHLRRLRLVRALIQVGKVPVATAREVLG 69 (222)
T ss_dssp CHHHHHHHHTCCHHH----HHHHHHHTSSCCC---------CCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH----HHHHHHCCCCCCCeeCCCCceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 467899999997654 55667889999876556678888999999886544444 4689877665544
No 321
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=36.16 E-value=90 Score=20.42 Aligned_cols=62 Identities=10% Similarity=0.209 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
+...|..+...+=+...+||...|++. ..|.+|. +|+.=.+|.+.+..+|.++. |++.+|.
T Consensus 8 ~~~~l~~~r~~~g~sq~~lA~~~gis~-~~i~~~e--------------~g~~~~~~~~~l~~ia~~l~----~~~~~l~ 68 (78)
T 3b7h_A 8 VSEHLMELITQQNLTINRVATLAGLNQ-STVNAMF--------------EGRSKRPTITTIRKVCGTLG----ISVHDFF 68 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHH--------------CTTCCCCCHHHHHHHHHHHT----CCHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHH--------------cCCCCCCCHHHHHHHHHHcC----CCHHHHh
Confidence 444555555555567899999999964 4555553 24432478899999999983 7887775
Q ss_pred h
Q 026130 216 S 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 69 ~ 69 (78)
T 3b7h_A 69 D 69 (78)
T ss_dssp C
T ss_pred c
Confidence 3
No 322
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=36.15 E-value=40 Score=27.84 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhc-Cc----cchH-H-HHHHcCCChHHHHHHHHHHHhcCCcceeeeC--CCC
Q 026130 135 LLADFVEYIKKH-KC----IPLE-D-LAAEFKLRTQECINRITSLENMGRLSGVMDD--RGK 187 (243)
Q Consensus 135 lL~~Fi~yIK~~-Kv----V~LE-d-LA~~F~lrtqd~I~RIq~Le~~g~LtGViDD--RGK 187 (243)
..+..++++... -. |... + ||..||.+..-+...|..++.+|.| ++|| .|-
T Consensus 100 ~~~~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l--~~D~~~~G~ 159 (169)
T 1u5t_B 100 VKEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDL--LIDKQLSGI 159 (169)
T ss_dssp HHHHHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSE--EEEECSSCE
T ss_pred HHHHHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCE--EEECCCCcc
Confidence 334455677654 55 6777 8 9999999999999999999999987 6786 463
No 323
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=35.92 E-value=16 Score=24.65 Aligned_cols=16 Identities=19% Similarity=0.383 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLS 80 (82)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7899999999999975
No 324
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=35.80 E-value=21 Score=24.84 Aligned_cols=34 Identities=24% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHhcCccchHHHHHHcCCCh----HHHHHHHHHHHhcC
Q 026130 143 IKKHKCIPLEDLAAEFKLRT----QECINRITSLENMG 176 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrt----qd~I~RIq~Le~~g 176 (243)
+..-||.-|-++...+||+| +++|+||+.....+
T Consensus 10 l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 34567888888888899887 89999999987765
No 325
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=35.49 E-value=82 Score=19.76 Aligned_cols=54 Identities=26% Similarity=0.373 Sum_probs=35.9
Q ss_pred HHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 143 IKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
+...+=+...+||...|++. ..|.++. +|+. .+|.+.+..+|.++. |++.+|..
T Consensus 9 ~r~~~g~s~~~lA~~~gis~-~~i~~~e--------------~g~~-~~~~~~l~~i~~~l~----~~~~~l~~ 62 (66)
T 2xi8_A 9 IREKKKISQSELAALLEVSR-QTINGIE--------------KNKY-NPSLQLALKIAYYLN----TPLEDIFQ 62 (66)
T ss_dssp HHHHTTCCHHHHHHHHTSCH-HHHHHHH--------------TTSC-CCCHHHHHHHHHHTT----SCHHHHEE
T ss_pred HHHHcCCCHHHHHHHHCcCH-HHHHHHH--------------cCCC-CCCHHHHHHHHHHHC----cCHHHHhC
Confidence 33344456789999999964 4555543 2333 368889999998873 67766643
No 326
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=35.36 E-value=53 Score=24.62 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=35.9
Q ss_pred HHHHHHHHHhc---C-ccchHHHHHHc-CCChHHHHHHHHHHHhcCCc
Q 026130 136 LADFVEYIKKH---K-CIPLEDLAAEF-KLRTQECINRITSLENMGRL 178 (243)
Q Consensus 136 L~~Fi~yIK~~---K-vV~LEdLA~~F-~lrtqd~I~RIq~Le~~g~L 178 (243)
-+..|+|++.. | =..+.|++..| ++++-+|-.-++.|..+|.|
T Consensus 5 K~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 5 KQKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 35667777543 3 56899999999 99999999999999999987
No 327
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=35.34 E-value=17 Score=24.47 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 65 ~ls~~ei~~l~~yl~~ 80 (82)
T 1cch_A 65 PVTEEEAKILAEWVLS 80 (82)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 7999999999999975
No 328
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=35.29 E-value=64 Score=24.33 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=10.7
Q ss_pred hHHHHHHcCCChHHHHHHHHHHH
Q 026130 151 LEDLAAEFKLRTQECINRITSLE 173 (243)
Q Consensus 151 LEdLA~~F~lrtqd~I~RIq~Le 173 (243)
|..|...++++..++..-.+.+-
T Consensus 13 l~~l~~~~~~~~~~i~~~f~~fd 35 (190)
T 1g8i_A 13 VEELTRKTYFTEKEVQQWYKGFI 35 (190)
T ss_dssp HHHHHHTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHH
Confidence 33444455555555444444443
No 329
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=35.22 E-value=33 Score=25.50 Aligned_cols=35 Identities=23% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 184 DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 184 DRGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
..|+-|.+|+.|+.-++-|+...|+ ||..+|....
T Consensus 22 ~~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 57 (112)
T 2jzy_A 22 RSGKKIHLTGKEYVLLELLLQRTGEVLPRSLISSLV 57 (112)
T ss_dssp ETTEECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred ECCEEEecCHHHHHHHHHHHHCCCceEcHHHHHHHh
Confidence 3688899999999999999999998 5678888765
No 330
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=35.21 E-value=26 Score=27.10 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGRV-SISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGRV-Si~eLa~~s 218 (243)
.|+-|.+|+.|+.-+.-|+...|+| |..+|....
T Consensus 31 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~v 65 (120)
T 2zxj_A 31 RGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp TTEEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHh
Confidence 5999999999999999999999996 667887764
No 331
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=35.18 E-value=1e+02 Score=25.97 Aligned_cols=63 Identities=14% Similarity=0.299 Sum_probs=46.7
Q ss_pred cchhHHHHHHHHHHhcCccchHHHHHHc---CCC--hHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHH
Q 026130 131 GDRDLLADFVEYIKKHKCIPLEDLAAEF---KLR--TQECINRITSLENMGRLSGVMDDRGKYIYISQAEM 196 (243)
Q Consensus 131 ~~~~lL~~Fi~yIK~~KvV~LEdLA~~F---~lr--tqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl 196 (243)
...++|..+..-|..+.|-.=+||+..+ |+. ||-+|+| +|-+.| |.=|-+..|+|+|.-|.+.
T Consensus 30 k~~~r~~~I~eiI~~~~I~TQeEL~~~L~~~Gi~viTQATvSR--DIkELg-lvKv~~~~G~~~Y~lp~~~ 97 (180)
T 3v4g_A 30 KQDNLVRAFKALLKEERFGSQGEIVEALKQEGFENINQSKVSR--MLTKFG-AVRTRNAKMEMVYCLPTEL 97 (180)
T ss_dssp CHHHHHHHHHHHHHHTCCCSHHHHHHHHHHTTCTTCCHHHHHH--HHHHTT-CEEEECTTSCEEEECC---
T ss_pred cHHHHHHHHHHHHhhCCcCCHHHHHHHHHHCCCcccCHHHHHH--HHHHcC-CEEeeCCCCCEEEEeCCcc
Confidence 3456788999999999999888877543 666 7999998 344444 5568889999999988774
No 332
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=34.53 E-value=20 Score=24.14 Aligned_cols=16 Identities=50% Similarity=0.667 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 70 ~ls~~ei~~l~~yl~s 85 (87)
T 2zxy_A 70 GLSDAELKALADFILS 85 (87)
T ss_dssp GCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 333
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=34.40 E-value=1.1e+02 Score=26.30 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHhc------CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH------------
Q 026130 133 RDLLADFVEYIKKH------KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA------------ 194 (243)
Q Consensus 133 ~~lL~~Fi~yIK~~------KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e------------ 194 (243)
..+...+.+.|... ++-...+||..||++..-|..-|+.|..+|.|..+ --+|.| |++.
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~--V~~~~~~~~~~~~~~~ 108 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGR-SGSGTY--VRERPVPRRVARSGYR 108 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-CC--EE--ECCCCCCEEEECCSSC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-cCceEE--EecCCccceechhhcc
Confidence 33445556666653 44468899999999999999999999999987542 224444 4332
Q ss_pred ---HHHHHHHHHHhcCCcc
Q 026130 195 ---EMKAVADYIKRQGRVS 210 (243)
Q Consensus 195 ---El~aVA~fI~~rGRVS 210 (243)
.+..+...+...|...
T Consensus 109 ~~~~~~sf~~~~~~~G~~~ 127 (272)
T 3eet_A 109 PDSGATPFRQEQADGAVRG 127 (272)
T ss_dssp C-CCCCHHHHHCCCTTCCE
T ss_pred ccccccchhHHHHhcCCcc
Confidence 2345556666666644
No 334
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=34.38 E-value=26 Score=30.24 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.4
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHH
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITS 171 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~ 171 (243)
.+|.|.|.+||.++|-+-+++|..+.+
T Consensus 131 ~rk~~~lg~ls~~~Gwk~~~vv~~le~ 157 (198)
T 4a17_I 131 SRPVCKLGDLSASVGWGKQTLIEKLEE 157 (198)
T ss_dssp TSCEEEHHHHHHHTTCTTHHHHHHHHH
T ss_pred CCCeEEHHHHHHHhCchHHHHHHHHHH
Confidence 469999999999999999999998764
No 335
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=33.98 E-value=20 Score=24.42 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.9
Q ss_pred EEcHHHHHHHHHHHHhc
Q 026130 190 YISQAEMKAVADYIKRQ 206 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~r 206 (243)
-+|++|+.+|+.||...
T Consensus 67 ~ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 67 MIPPADALKIGEYVVAS 83 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 38999999999999863
No 336
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=33.97 E-value=51 Score=24.96 Aligned_cols=35 Identities=23% Similarity=0.357 Sum_probs=30.1
Q ss_pred CCCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 184 DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 184 DRGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
-.|+-|-+|+.|+.-++-|+...|+ ||..+|....
T Consensus 37 ~~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 72 (121)
T 2hwv_A 37 KRGEKIELTHREFELLYYLAKHIGQVMTREHLLQTV 72 (121)
T ss_dssp ETTEEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred ECCEEEECCHHHHHHHHHHHHcCCeEEcHHHHHHHH
Confidence 3588899999999999999999997 5678888765
No 337
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=33.94 E-value=23 Score=24.04 Aligned_cols=16 Identities=44% Similarity=0.669 Sum_probs=14.5
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++|+.+|+.||...
T Consensus 72 ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 72 LSDADIANVAAYIADQ 87 (93)
T ss_dssp BCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999853
No 338
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=33.81 E-value=26 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.5
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHH
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITS 171 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~ 171 (243)
.+|.|.|.+||.++|-+-+++|..+..
T Consensus 137 ~rk~~~lg~ls~~~Gwk~~~vv~~le~ 163 (206)
T 3iz5_K 137 GHRYCLLGQLSKEVGWNYADTIRELEE 163 (206)
T ss_dssp SSCEEEHHHHGGGTCTTHHHHHHHHHH
T ss_pred CCCeEEHHHHHHHHCchHHHHHHHHHH
Confidence 578999999999999999999998764
No 339
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=33.69 E-value=20 Score=24.29 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 63 ~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 63 RYSDEEMKAMADYMSK 78 (79)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 340
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=33.20 E-value=42 Score=24.70 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.1
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
.|+-|-+|+.|+.-++-|+...|+ ||..+|....
T Consensus 29 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 63 (110)
T 2pmu_A 29 AGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHV 63 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHHCCCEEEcHHHHHHHH
Confidence 588899999999999999999998 5778888765
No 341
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=33.04 E-value=22 Score=24.14 Aligned_cols=40 Identities=25% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 159 KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
+++...++..|. .|. ++|-.-+. .+|++|+.+|+.||...
T Consensus 43 ~~~~~~l~~~i~----~g~--~~Mp~~~~--~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 43 GRTEKSIISQVT----GGK--NAMPAFGG--RLSDEEIANVAAYVLAS 82 (88)
T ss_dssp CSSHHHHHHHHH----HCB--TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH----cCc--CCCCCcCC--CCCHHHHHHHHHHHHHH
Confidence 334455554443 333 45554333 48999999999999863
No 342
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=32.90 E-value=1.6e+02 Score=25.31 Aligned_cols=67 Identities=13% Similarity=0.292 Sum_probs=50.5
Q ss_pred ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH--HHHhcCCccHHHHHhhcc
Q 026130 148 CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKSN 219 (243)
Q Consensus 148 vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~--fI~~rGRVSi~eLa~~sN 219 (243)
...+-++|..+|+++. .|.--+..|.|..+-.+.|.|=|-|++++..|.. +++.-| +|+.++....+
T Consensus 3 ~~tI~evA~~~gvs~~----TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~~L~~I~~lr~~G-~sL~eIk~~l~ 71 (249)
T 3qao_A 3 AMQIKELAELTGVSVR----TLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELD-FPLKKIQQILD 71 (249)
T ss_dssp CBCHHHHHHHHCCCHH----HHHHHHHTTSSCCEECTTTCCEEBCHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHH----HHHHHHHCCCCCCceECCCCCeeeCHHHHHHHHHHHHHHHCC-CCHHHHHHHhc
Confidence 4568899999999764 4566777999999986677788889999987654 455555 78877766543
No 343
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=32.86 E-value=49 Score=26.58 Aligned_cols=46 Identities=22% Similarity=0.321 Sum_probs=38.1
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
...|.+.+||..+|++..-+-.-|+.|...|-|..+--..|=|.-.
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~La 71 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLD 71 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEec
Confidence 4678999999999999999999999999999987774444446543
No 344
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=32.83 E-value=40 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.3
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
.|+-|-+|+.|+.-++-|+...|+ ||..+|....
T Consensus 36 ~g~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~v 70 (115)
T 2k4j_A 36 HEKKLDLTRAEYEILSLLISKKGYVFSRESIAIES 70 (115)
T ss_dssp TTEEECSCHHHHHHHHHHHHHCCCEECHHHHHHHT
T ss_pred CCEEEecCHHHHHHHHHHHHcCCcEEcHHHHHHHH
Confidence 578899999999999999999997 6778998866
No 345
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.76 E-value=1.1e+02 Score=23.96 Aligned_cols=65 Identities=11% Similarity=0.197 Sum_probs=46.5
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHH--HHHhcCCccHHHHHhhc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVAD--YIKRQGRVSISHLASKS 218 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~--fI~~rGRVSi~eLa~~s 218 (243)
..+.++|..+|+++.- |.--+..|.|..+..+.|.|=|-|++.+..+.. +++.- -+|+.++....
T Consensus 3 ~~I~e~A~~~gvs~~t----LR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~-G~sL~eIk~~l 69 (142)
T 3gp4_A 3 LNIKEASEKSGVSADT----IRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRA-GLSIEALIDYL 69 (142)
T ss_dssp BCHHHHHHHHTSCHHH----HHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CcHHHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHHHHHHHHc-CCCHHHHHHHH
Confidence 3578999999997654 445577799999766677778889999986643 33433 47887776543
No 346
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=32.69 E-value=53 Score=29.46 Aligned_cols=84 Identities=13% Similarity=0.126 Sum_probs=42.0
Q ss_pred HHHHhhhhccceecccccccccccccchhHHHHHHHHHHhcCccchHHHHHHcC--CChHHHHHHHHHHHhcCCcceeee
Q 026130 106 AFEFEKWKGEFSIDAEGTTENEVQDGDRDLLADFVEYIKKHKCIPLEDLAAEFK--LRTQECINRITSLENMGRLSGVMD 183 (243)
Q Consensus 106 ~eEY~kwK~~f~VEeeG~~~~~~~~~~~~lL~~Fi~yIK~~KvV~LEdLA~~F~--lrtqd~I~RIq~Le~~g~LtGViD 183 (243)
...+..++..+-....... .-+--..|..-|.|||..+-..-.-....++ .-+.+-...+ -|++.+.+.=|++
T Consensus 29 n~~~~~L~~l~p~~~~~~~----k~dk~~il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~gfi~v~~ 103 (387)
T 4f3l_B 29 NSFIDELASLVPTCNAMSR----KLDKLTVLRMAVQHMKTLRGATNPYTEANYKPTFLSDDELKHL-ILRAADGFLFVVG 103 (387)
T ss_dssp HHHHHHHHHHCHHHHHCSS----CCCHHHHHHHHHHHHHHHHCC------CCSSCTTSCHHHHHHH-HHHTCCSEEEEEE
T ss_pred HHHHHHHHHhcCCCCcccc----ccCHHHHHHHHHHHHHHhhcccccccccccCcccCCHHHHHHH-HHhcCCCEEEEEe
Confidence 4555556666643321111 1224567899999999755221000000010 1122222222 3456666666777
Q ss_pred C-CCCeEEEcHH
Q 026130 184 D-RGKYIYISQA 194 (243)
Q Consensus 184 D-RGKFIYIS~e 194 (243)
. .|+++|||+.
T Consensus 104 ~~~G~i~yvs~~ 115 (387)
T 4f3l_B 104 CDRGKILFVSES 115 (387)
T ss_dssp TTTCBEEEECTT
T ss_pred cCCeEEEEEchh
Confidence 4 5999999964
No 347
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.56 E-value=92 Score=24.24 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=41.3
Q ss_pred HHHHHHhcCccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 139 FVEYIKKHKCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
.++++..+.-+..++|...+ +++..-|-+-|..|...|.|.-|-.+.|..-|-
T Consensus 24 Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 24 VLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp HHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 34455454567777776665 788888889999999999999998888877775
No 348
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=32.18 E-value=22 Score=23.65 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++++.+|+.||..
T Consensus 54 ~ls~~ei~~l~~yl~~ 69 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAE 69 (71)
T ss_dssp SSCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 349
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=32.16 E-value=17 Score=25.04 Aligned_cols=16 Identities=13% Similarity=0.397 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 64 ~Lsd~ei~~l~~Yi~~ 79 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSK 79 (81)
T ss_dssp SCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4899999999999975
No 350
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=32.08 E-value=31 Score=25.82 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCCCeEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhc
Q 026130 184 DRGKYIYISQAEMKAVADYIKRQGRV-SISHLASKS 218 (243)
Q Consensus 184 DRGKFIYIS~eEl~aVA~fI~~rGRV-Si~eLa~~s 218 (243)
-.|+-|.+|+.|+.-+.-|+...|+| |..+|....
T Consensus 30 ~~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~v 65 (120)
T 2z9m_A 30 KRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTV 65 (120)
T ss_dssp ETTEEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHH
T ss_pred ECCEEEeCCHHHHHHHHHHHHCCCceEcHHHHHHHH
Confidence 36889999999999999999999995 678887754
No 351
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=31.87 E-value=33 Score=29.98 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHH-HHHHHHHHhcCCccH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEM-KAVADYIKRQGRVSI 211 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl-~aVA~fI~~rGRVSi 211 (243)
...|..||....++.+++|+..+|+.+. +...| +|++++| -.|++++-.-.|..|
T Consensus 116 A~~f~~yL~~~~L~t~eev~~~L~~~~~--------------------~~~~f-~v~~edYLlGL~DLtGEL~R~ai 171 (249)
T 3axj_A 116 IIALVIYLEAGFLVTRETVAEMLGLKIS--------------------QSEGF-HLDVEDYLLGILQLASELSRFAT 171 (249)
T ss_dssp HHHHHHHHHHSSCCCHHHHHHHHTCBSS--------------------TTTSS-BCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhccccC--------------------CCccc-ccCHHHHHHHHHHHHhHHHHHHH
Confidence 5678889999999999999998888642 33333 6777654 455555554444333
No 352
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=31.81 E-value=9.8 Score=36.96 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHhcC-ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHH---------HHHHHHHhcC
Q 026130 138 DFVEYIKKHK-CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMK---------AVADYIKRQG 207 (243)
Q Consensus 138 ~Fi~yIK~~K-vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~---------aVA~fI~~rG 207 (243)
..+.++..++ .+..++||...|+..+.|+.-|..|++.|.+.-|-.---+++-+|++--. .|..+|...|
T Consensus 9 ~iL~~l~~~~~~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg~~~~~~G~pE~~~~~~~~~~~ 88 (508)
T 3l4g_A 9 LLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEG 88 (508)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcCCCcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHHHHHHHcCCHHHHHHHHhhhcC
Confidence 3445565566 66889999999999999999999999998333333333333334443221 2445666544
Q ss_pred CccHHHHHh
Q 026130 208 RVSISHLAS 216 (243)
Q Consensus 208 RVSi~eLa~ 216 (243)
+++++|..
T Consensus 89 -~~~~~l~~ 96 (508)
T 3l4g_A 89 -LAQSELMR 96 (508)
T ss_dssp ---------
T ss_pred -ccHHHHhc
Confidence 78888864
No 353
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=31.73 E-value=24 Score=23.69 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=18.3
Q ss_pred eeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 180 GVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 180 GViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
++|-.-+. .+|++|+.+|+.||...
T Consensus 56 ~~Mp~~~~--~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 56 NAMPAFGG--RLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCC--CCCHHHHHHHHHHHHHH
Confidence 44544332 48999999999999863
No 354
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.37 E-value=1.4e+02 Score=22.99 Aligned_cols=54 Identities=11% Similarity=0.212 Sum_probs=43.2
Q ss_pred HHHHHHHhc-CccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 138 DFVEYIKKH-KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 138 ~Fi~yIK~~-KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
..++++..+ .-+..+||...+ +++..-|-+-|+.|...|.|.-|-.+.|..-|.
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 345566553 567788888777 788888999999999999999998888877775
No 355
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=31.19 E-value=62 Score=27.78 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAE 195 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eE 195 (243)
...-|-|.-.+.....++||..+|++...|...+..|...|.|.- .++--|-|.++-
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~~~ 222 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKI---INDNTVVLDEDQ 222 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE---ETTTEEEECHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE---ecCCeEEecHHH
Confidence 345666677889999999999999999999999999999998862 223335565554
No 356
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=31.01 E-value=27 Score=23.91 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhc
Q 026130 190 YISQAEMKAVADYIKRQ 206 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~r 206 (243)
.+|++|+.+|+.||...
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999864
No 357
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.91 E-value=93 Score=24.36 Aligned_cols=54 Identities=13% Similarity=0.293 Sum_probs=42.7
Q ss_pred HHHHHHHhc--CccchHHHHHHc-----CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE
Q 026130 138 DFVEYIKKH--KCIPLEDLAAEF-----KLRTQECINRITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 138 ~Fi~yIK~~--KvV~LEdLA~~F-----~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI 191 (243)
..+++|..+ .-+..++|...+ +++..-|-.-|+.|...|.|.-+-.+.|...|-
T Consensus 21 ~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 21 KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 345555544 467888888887 888888888999999999999988777877775
No 358
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=30.60 E-value=25 Score=23.85 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=14.5
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 68 ~ls~~ei~~l~~yl~~ 83 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVD 83 (89)
T ss_dssp TSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3899999999999985
No 359
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=30.59 E-value=25 Score=23.59 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.5
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++++.+|+.||...
T Consensus 66 ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 66 LTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7999999999999863
No 360
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=30.29 E-value=39 Score=24.71 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=29.7
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
.|+-|-+|+.|+.-+.-|+...|+ ||..+|....
T Consensus 26 ~~~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 60 (110)
T 1opc_A 26 EDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLA 60 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHcCCceEcHHHHHHHH
Confidence 578899999999999999999997 6678888765
No 361
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=30.15 E-value=40 Score=30.72 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=24.4
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHH
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~e 194 (243)
.+.+.+.||+..-|+++.|||..++.| |.|.- ..|.||.+...
T Consensus 212 ~~~isi~~is~~T~i~~~DIi~tL~~l---~~l~~---~~g~~~i~~~~ 254 (284)
T 2ozu_A 212 DKQISIKKLSKLTGICPQDITSTLHHL---RMLDF---RSDQFVIIRRE 254 (284)
T ss_dssp ----CHHHHHHHHCBCHHHHHHHHHHT---TCC------------CCCH
T ss_pred CCcEeHHHHHHHhCCCHHHHHHHHHHC---CCEEe---eCCeEEEEcCH
Confidence 467999999999999999999888877 33321 25666655433
No 362
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=30.08 E-value=26 Score=24.14 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 159 KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
+.+...++..|. .|. |+|=.-+. .+|++|+.+|+.||...
T Consensus 46 ~~~~~~l~~~i~----~g~--~~Mp~~~~--~ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 46 GLTLEAIKYQVN----NGK--GAMPAWAD--RLDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp CSCHHHHHHHHH----HCB--TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH----cCc--CCCcchhh--hCCHHHHHHHHHHHHHh
Confidence 344555555554 343 44544332 38999999999999864
No 363
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=29.70 E-value=39 Score=25.09 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=28.4
Q ss_pred HHhcCccchHHHHHHcCCCh----HHHHHHHHHHHhcC
Q 026130 143 IKKHKCIPLEDLAAEFKLRT----QECINRITSLENMG 176 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrt----qd~I~RIq~Le~~g 176 (243)
+..-||..|-++...+||++ +|+|+||+.-....
T Consensus 26 l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 26 LDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp TTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 45678888999999999987 89999999877654
No 364
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=29.61 E-value=1.4e+02 Score=20.52 Aligned_cols=60 Identities=13% Similarity=0.206 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+...|..+...+=+...+||...|++. ..|.+|.. |+. .+|.+-+..+|.++. |++.+|
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~gis~-~~is~~e~--------------g~~-~p~~~~l~~la~~l~----v~~~~l 72 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKINEKP-QVIADYES--------------GRA-IPNNQVLGKIERAIG----LKLRGK 72 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCH-HHHHHHHH--------------TCS-CCCHHHHHHHHHHHT----BCCSST
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHc--------------CCC-CCCHHHHHHHHHHHC----cCHHHH
Confidence 3556666666677778899999999965 45666543 343 378888999999885 566665
No 365
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=29.38 E-value=1.1e+02 Score=24.54 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCcc-chHHHHHHcCCC-hHHHHHHHHHHHhcCCc
Q 026130 136 LADFVEYIKKHKCI-PLEDLAAEFKLR-TQECINRITSLENMGRL 178 (243)
Q Consensus 136 L~~Fi~yIK~~KvV-~LEdLA~~F~lr-tqd~I~RIq~Le~~g~L 178 (243)
+..+..+.+.+.+- ...+||.++|++ +.-+-+.+..|...|.|
T Consensus 12 ~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l 56 (202)
T 1jhf_A 12 FDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVI 56 (202)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCc
Confidence 33333445555653 689999999998 55555566677776544
No 366
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.37 E-value=43 Score=23.24 Aligned_cols=26 Identities=8% Similarity=0.229 Sum_probs=11.5
Q ss_pred cHHHHHHHHHHHHhcCCccHHHHHhh
Q 026130 192 SQAEMKAVADYIKRQGRVSISHLASK 217 (243)
Q Consensus 192 S~eEl~aVA~fI~~rGRVSi~eLa~~ 217 (243)
|+..+..+..++...|.+|.++|+..
T Consensus 20 ~~~~~~~l~~l~~~~~~~t~~ela~~ 45 (109)
T 2d1h_A 20 TDTDVAVLLKMVEIEKPITSEELADI 45 (109)
T ss_dssp CHHHHHHHHHHHHHCSCEEHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444444444433444444444443
No 367
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=29.35 E-value=27 Score=23.93 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=15.7
Q ss_pred EEcHHHHHHHHHHHHhcC
Q 026130 190 YISQAEMKAVADYIKRQG 207 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~rG 207 (243)
.+|++++.+|+.||....
T Consensus 57 ~ls~~ei~~l~~yl~~~~ 74 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSLP 74 (80)
T ss_dssp TSCHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCc
Confidence 379999999999998754
No 368
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=29.12 E-value=27 Score=23.72 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.6
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++|+.+|+.||...
T Consensus 68 ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 68 LDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999863
No 369
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=29.11 E-value=37 Score=23.18 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=26.0
Q ss_pred HHhcCccchHHHHHHcCCCh----HHHHHHHHHHHh
Q 026130 143 IKKHKCIPLEDLAAEFKLRT----QECINRITSLEN 174 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrt----qd~I~RIq~Le~ 174 (243)
+..-+|+-|-++...+||+| .++|+||+.-..
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDE 40 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 34568888999999999987 899999987544
No 370
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=28.99 E-value=13 Score=25.61 Aligned_cols=17 Identities=6% Similarity=0.284 Sum_probs=13.4
Q ss_pred cceeeeCCCCeEEEcHH
Q 026130 178 LSGVMDDRGKYIYISQA 194 (243)
Q Consensus 178 LtGViDDRGKFIYIS~e 194 (243)
+.-++|..|+|+|+++.
T Consensus 14 ~i~~~d~~g~i~~~n~~ 30 (121)
T 3f1p_B 14 FISRHNIEGIFTFVDHR 30 (121)
T ss_dssp EEEEECTTSBEEEECTT
T ss_pred eEEEECCCceEEEECcc
Confidence 34456889999999985
No 371
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=28.98 E-value=72 Score=26.29 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=36.0
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHH
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEM 196 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl 196 (243)
.++.+.|+|..+|++. ++|..|..+|.|.+|-. |+..+|....+
T Consensus 30 ~~LTv~EVAe~LgVs~----srV~~LIr~G~L~AVr~--Gr~~rVP~~f~ 73 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPV----SKVAQQLREGHLVAVRR--AGGVVIPQVFF 73 (148)
T ss_dssp CEEEHHHHHHHHTCCH----HHHHHHHHTTSCCCEEE--TTEEEEEGGGB
T ss_pred ceEcHHHHHHHhCCCH----HHHHHHHHCCCceEEEE--CCEEEecHHHh
Confidence 7899999999999986 56778899999999998 45666665544
No 372
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=28.96 E-value=12 Score=31.77 Aligned_cols=42 Identities=24% Similarity=0.150 Sum_probs=4.2
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI 189 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI 189 (243)
++-...+||..||++..-|..-|+.|..+|.|.-+ --+|.||
T Consensus 39 ~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 80 (247)
T 2ra5_A 39 LLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR-RGVGTQV 80 (247)
T ss_dssp -----------------------------CEEEEE-C------
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-cCceeEE
Confidence 33367899999999999999999999999987543 2345554
No 373
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=28.94 E-value=23 Score=24.00 Aligned_cols=16 Identities=44% Similarity=0.615 Sum_probs=14.5
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 64 ~Ls~~ei~~l~~yl~~ 79 (81)
T 1a56_A 64 NVSDADAKALADWILT 79 (81)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5899999999999975
No 374
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=28.94 E-value=1.3e+02 Score=21.58 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
+..-|..+...+=+...+||...|++ ...|.+|.. |+. .+|.+-+..+|.++. ||+.+|.
T Consensus 10 ~~~~l~~~r~~~glsq~~lA~~~gis-~~~i~~~e~--------------g~~-~p~~~~l~~la~~l~----v~~~~l~ 69 (114)
T 3op9_A 10 FAENLSRLKKEHGLKNHQIAELLNVQ-TRTVAYYMS--------------GET-KPDIEKLIRLATYFH----LSIDELV 69 (114)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHHH--------------TSS-CCCHHHHHHHHHHHT----CCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc--------------CCC-CCCHHHHHHHHHHhC----CCHHHHh
Confidence 44555555555666789999999994 556666543 332 279999999999984 8998887
Q ss_pred hhcc
Q 026130 216 SKSN 219 (243)
Q Consensus 216 ~~sN 219 (243)
...+
T Consensus 70 ~~~~ 73 (114)
T 3op9_A 70 GYVQ 73 (114)
T ss_dssp TCCC
T ss_pred cCCC
Confidence 6544
No 375
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=28.89 E-value=26 Score=24.56 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 376
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=28.47 E-value=34 Score=25.51 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.0
Q ss_pred eCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 183 DDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 183 DDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
|+.-+.++||++-...|..||+.+
T Consensus 52 ~~~kr~~~V~~~gh~~vk~f~k~~ 75 (80)
T 3dgp_A 52 DDKKKKFFISKEGNSQVLDFAKRK 75 (80)
T ss_dssp ETTTTEEEEEGGGHHHHHHHHTTC
T ss_pred cCCccEEEEeccchHHHHHHHHHH
Confidence 777889999999999999999865
No 377
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=28.36 E-value=29 Score=23.75 Aligned_cols=16 Identities=44% Similarity=0.796 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++|+.+|+.||...
T Consensus 67 ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 67 LSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8999999999999864
No 378
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=28.34 E-value=40 Score=23.34 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=18.9
Q ss_pred HHHHHHHHhcCCccHHHHHhhcc
Q 026130 197 KAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 197 ~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
..|-.+|...|.+|+++|+..+|
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lg 25 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALA 25 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHC
Confidence 35778888889999999998775
No 379
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=28.33 E-value=43 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=13.3
Q ss_pred cceeeeCCCCeEEEcHH
Q 026130 178 LSGVMDDRGKYIYISQA 194 (243)
Q Consensus 178 LtGViDDRGKFIYIS~e 194 (243)
..-++|..|+|+|+++.
T Consensus 25 ~i~~~d~~g~i~~~N~~ 41 (118)
T 3olo_A 25 ASFCLGDNWQFLYVNDA 41 (118)
T ss_dssp EEEEECTTSBEEEECHH
T ss_pred eEEEECCCCcEEEEHHH
Confidence 33457889999999974
No 380
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=28.26 E-value=33 Score=25.98 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=21.7
Q ss_pred EcHHHHHHHHHHHHhc----CCccHHHHHhhcc
Q 026130 191 ISQAEMKAVADYIKRQ----GRVSISHLASKSN 219 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r----GRVSi~eLa~~sN 219 (243)
.|+.| ..||+||..+ ...||.+||..|+
T Consensus 19 ls~~e-~~ia~yil~~~~~~~~~si~elA~~~~ 50 (111)
T 2o3f_A 19 LPPSE-RKLADYILAHPHXAIESTVNEISALAN 50 (111)
T ss_dssp SCHHH-HHHHHHHHHCHHHHHTCCHHHHHHHTT
T ss_pred CCHHH-HHHHHHHHHChHHHHhcCHHHHHHHHC
Confidence 56666 4689999887 5678888888876
No 381
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=28.18 E-value=26 Score=25.19 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=14.1
Q ss_pred EcHHHHHHHHHHHHh
Q 026130 191 ISQAEMKAVADYIKR 205 (243)
Q Consensus 191 IS~eEl~aVA~fI~~ 205 (243)
+|++|+.+|+.||..
T Consensus 82 Lsd~ei~~l~~Yi~~ 96 (99)
T 3dp5_A 82 IPPADALKIGEYVVA 96 (99)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 899999999999975
No 382
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=28.00 E-value=22 Score=23.96 Aligned_cols=16 Identities=6% Similarity=0.426 Sum_probs=14.4
Q ss_pred EEcHHHHHHHHHHHHh
Q 026130 190 YISQAEMKAVADYIKR 205 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~ 205 (243)
.+|++|+.+|+.||..
T Consensus 62 ~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 62 QVAEADIEKIVRWVLT 77 (79)
T ss_dssp TSCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 5899999999999975
No 383
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=27.89 E-value=38 Score=24.67 Aligned_cols=34 Identities=12% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGR-VSISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~s 218 (243)
.|+-|.+|+.|+.-++-|+...|+ ||..+|....
T Consensus 24 ~g~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~v 58 (109)
T 2hqn_A 24 KGREVEVKGKPFEVLTHLARHRDQIVSKEQLLDAI 58 (109)
T ss_dssp TTEEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHH
Confidence 588899999999999999999998 5778888765
No 384
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=27.62 E-value=32 Score=23.66 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhcC
Q 026130 191 ISQAEMKAVADYIKRQG 207 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rG 207 (243)
+|++|+.+|+.||....
T Consensus 67 ls~~ei~~l~~yl~~l~ 83 (87)
T 1cno_A 67 LSDADIANLAAYYASNP 83 (87)
T ss_dssp CCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 79999999999998653
No 385
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=27.30 E-value=51 Score=22.44 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHhcCccchHHHHHHcCCCh----HHHHHHHHHHHh
Q 026130 143 IKKHKCIPLEDLAAEFKLRT----QECINRITSLEN 174 (243)
Q Consensus 143 IK~~KvV~LEdLA~~F~lrt----qd~I~RIq~Le~ 174 (243)
+..-||+-|-+....+||+| .++|+||+.-..
T Consensus 10 ~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~ 45 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDTRGLKAELAERLQAALS 45 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHC
T ss_pred HHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence 45678888889999999987 899999987654
No 386
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=27.14 E-value=2.6e+02 Score=24.57 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=51.4
Q ss_pred HHHHHHHHHhc-CccchH---HHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHH
Q 026130 136 LADFVEYIKKH-KCIPLE---DLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVA 200 (243)
Q Consensus 136 L~~Fi~yIK~~-KvV~LE---dLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA 200 (243)
++=|-+|+..+ .-|.+- .|...||++..-+---|..|.+.|.|+..-..|.-|-.+|+.=...+.
T Consensus 29 ~tl~Gd~~~~~g~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 29 VTCLGDVSRDGVIEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp HHHHHHHHHTTCCCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHHHhccCCCcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 55556787665 344444 489999999999999999999999999987777778889997666553
No 387
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=27.07 E-value=15 Score=30.36 Aligned_cols=39 Identities=28% Similarity=0.559 Sum_probs=29.7
Q ss_pred eCCCCeEEEcHHHHHHHHHHHHh-cCCccH-HHHHhhcccccc
Q 026130 183 DDRGKYIYISQAEMKAVADYIKR-QGRVSI-SHLASKSNQFID 223 (243)
Q Consensus 183 DDRGKFIYIS~eEl~aVA~fI~~-rGRVSi-~eLa~~sN~lI~ 223 (243)
|..|+| +|..||++|..|+.. .=|+.+ .-|..+.+.||+
T Consensus 13 D~~gRy--ls~~EL~~l~~~~~~~~~Rl~aa~~l~~na~~Iv~ 53 (162)
T 3o18_A 13 DTQGRF--LSNTELQAVDGRFKRAVASMEAARALTNNAQSLID 53 (162)
T ss_dssp HHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhchHHHHHHHHHHHHhHHHHHH
Confidence 457776 799999999999987 357776 466766666665
No 388
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=26.95 E-value=1.6e+02 Score=21.95 Aligned_cols=55 Identities=24% Similarity=0.434 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHh------cCccchHHHHHH---cCCChHHHHHH-HHHHHhcCCcceeeeCCCCeEEE
Q 026130 134 DLLADFVEYIKK------HKCIPLEDLAAE---FKLRTQECINR-ITSLENMGRLSGVMDDRGKYIYI 191 (243)
Q Consensus 134 ~lL~~Fi~yIK~------~KvV~LEdLA~~---F~lrtqd~I~R-Iq~Le~~g~LtGViDDRGKFIYI 191 (243)
..|...|+|+|. -.=..|+||=.+ .++....---- -..|..+-+|. |+ .|||.|=
T Consensus 11 ~~lakiV~~mK~rh~~g~~~PltL~EILde~~~~d~~~~~k~wL~~eaL~~npkI~-~~--dgkf~fk 75 (81)
T 1d8j_A 11 GVLAKIVNYMKTRHQRGDTHPLTLDEILDETQHLDIGLKQKQWLMTEALVNNPKIE-VI--DGKYAFK 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCBCHHHHHHHHTCSSCCHHHHHHHHTTHHHHCTTEE-EC--SSSEEEC
T ss_pred ehHHHHHHHHHHhhccCCCCCccHHHHHHHHhccCCCHHHHHHHHHHHhhcCCceE-Ee--CCceecc
Confidence 358899999996 345667775555 44433322221 23466677777 55 6899983
No 389
>2jrf_A Tubulin polymerization-promoting protein family member 3; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.90 E-value=71 Score=27.20 Aligned_cols=31 Identities=29% Similarity=0.289 Sum_probs=25.7
Q ss_pred hHHHHHHc--CCChHHHHHHHHHHHhcC--Cccee
Q 026130 151 LEDLAAEF--KLRTQECINRITSLENMG--RLSGV 181 (243)
Q Consensus 151 LEdLA~~F--~lrtqd~I~RIq~Le~~g--~LtGV 181 (243)
|++||..- |++.+++++.|..|...| .++|+
T Consensus 79 L~~lA~kk~~g~s~eE~~~~i~kL~~~~gP~~~Gt 113 (184)
T 2jrf_A 79 LEELATKRFKGKSKEEAFDAICQLVAGKEPANVGV 113 (184)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHTTTTCCSSSSSC
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCCCCcccc
Confidence 78899998 999999999888888877 44563
No 390
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=26.77 E-value=12 Score=34.24 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=31.2
Q ss_pred HHHHHHH--HHHhcCC-ccHHHHHhhcccccccccchh
Q 026130 195 EMKAVAD--YIKRQGR-VSISHLASKSNQFIDLETKAQ 229 (243)
Q Consensus 195 El~aVA~--fI~~rGR-VSi~eLa~~sN~lI~L~p~~~ 229 (243)
=|+++|+ ||-+.|+ ||+.+|...-+..++++|...
T Consensus 32 gLNaLANHGyLpR~G~nit~~~l~~al~~~~n~~~~la 69 (299)
T 2ciw_A 32 ALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVI 69 (299)
T ss_dssp HHHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCHHHH
T ss_pred HHHHHHhcCCcCCCCCccCHHHHHHHHHHhcCCCHHHH
Confidence 3789999 9999999 999999999999999987644
No 391
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=26.67 E-value=35 Score=23.93 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhc
Q 026130 190 YISQAEMKAVADYIKRQ 206 (243)
Q Consensus 190 YIS~eEl~aVA~fI~~r 206 (243)
-+|++|+.+|+.||...
T Consensus 78 ~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 78 RLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999864
No 392
>3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A
Probab=26.51 E-value=61 Score=29.14 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=27.2
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceee
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVM 182 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi 182 (243)
-.+..||..||++.+-++-|++.|.....+.=|+
T Consensus 162 ~~I~~LA~~FgVS~eav~~RL~~l~~~p~~~vv~ 195 (301)
T 3dte_A 162 RALAELARRADVSATSALYALAERTAPPVIYAVC 195 (301)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTCCSCEEEEEE
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCEEEEEe
Confidence 4688999999999999999999887555444344
No 393
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=26.49 E-value=1.4e+02 Score=21.35 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH
Q 026130 52 EAAQQADEAARESRQSKQDRYTEMR 76 (243)
Q Consensus 52 k~qReaee~~REerk~~e~~~ee~r 76 (243)
++.|++++...+-..+++..++.+|
T Consensus 19 eAlrq~Ee~Rk~Kh~kME~ERE~mR 43 (63)
T 3rk3_E 19 EALRQAEEERKAKYAKMEAEREAVR 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544444444444444443
No 394
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=26.40 E-value=14 Score=35.97 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEM 196 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl 196 (243)
+..++|++.+..+.--||+.-+||+...+-..|..|.+.|.|.-+ -.|++-+...-|+
T Consensus 519 ~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~--G~gr~t~Y~~~~~ 576 (583)
T 3lmm_A 519 NAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVAV--GGGRSRRYRLVEL 576 (583)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe--CCCCceEEEEeec
Confidence 347789999999999999999999999999999999999999665 4566555554444
No 395
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=26.32 E-value=60 Score=25.15 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=36.3
Q ss_pred chHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEE
Q 026130 150 PLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIY 190 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIY 190 (243)
.+.+||..+|++..-+-.-++.|...|-|..+-. .|=|.-
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 8999999999999999999999999999998887 776654
No 396
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=26.30 E-value=1.3e+02 Score=19.31 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=27.8
Q ss_pred HHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceee--eCCCCeEEE
Q 026130 140 VEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVM--DDRGKYIYI 191 (243)
Q Consensus 140 i~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGVi--DDRGKFIYI 191 (243)
..++..+. .+.++|..+|++.. .|+++- .|.-.-.+ ...|+.+|-
T Consensus 7 ~~~~~~~g--s~~~~A~~lgis~~-~vs~~~----~~~~~~~l~~t~~G~~~~~ 53 (67)
T 2pij_A 7 SKYLEEHG--TQSALAAALGVNQS-AISQMV----RAGRSIEITLYEDGRVEAN 53 (67)
T ss_dssp HHHHHHTC--CHHHHHHHHTSCHH-HHHHHH----HTTCCEEEEECTTSCEEEE
T ss_pred HHHHHHcC--CHHHHHHHHCcCHH-HHHHHH----cCCCCCCeEEccCceEehH
Confidence 34566666 78999999999655 444443 23222233 677777663
No 397
>1zel_A Hypothetical protein RV2827C; winged-helix, helix-turn-HELI rickshaw, structural genomics, PSI; 1.93A {Mycobacterium tuberculosis} SCOP: a.4.5.83 d.377.1.1
Probab=26.21 E-value=58 Score=29.85 Aligned_cols=57 Identities=18% Similarity=0.279 Sum_probs=47.8
Q ss_pred HHHHHHHHH--HhcCccchHHHHHHc---CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcH
Q 026130 135 LLADFVEYI--KKHKCIPLEDLAAEF---KLRTQECINRITSLENMGRLSGVMDDRGKYIYISQ 193 (243)
Q Consensus 135 lL~~Fi~yI--K~~KvV~LEdLA~~F---~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~ 193 (243)
.++++|+-+ +..=|+..+|+...+ |+++. +-.-+..|..-|.|. .+=-||-|++|-|
T Consensus 17 ~ls~yi~~L~a~Gr~~FT~~E~~~~l~~~g~~~~-~~~AlrRL~kkG~L~-~~P~rGfyvIVPP 78 (298)
T 1zel_A 17 WASRVVSGLARDRPVVVTKEDLTQRLTEAGCGRD-PDSAIRELRRIGWLV-QLPVKGTWAFIPP 78 (298)
T ss_dssp GGHHHHHHHHHHCCSSEEHHHHHHHHHHTTCCCC-HHHHHHHHHHHTSEE-ECSSTTEEEECCT
T ss_pred HHHHHHHHHHhcCCEEeeHHHHHHHHhhcCCChH-HHHHHHHHHhCCcee-ccCcCceEEEeCc
Confidence 356777754 456678899999999 98888 889999999999997 6667999999999
No 398
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=26.17 E-value=38 Score=26.35 Aligned_cols=37 Identities=11% Similarity=0.264 Sum_probs=27.3
Q ss_pred ceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc-----cHHHHHhhcccc
Q 026130 179 SGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SISHLASKSNQF 221 (243)
Q Consensus 179 tGViDDRGKFIYIS~eEl~aVA~fI~~rGRV-----Si~eLa~~sN~l 221 (243)
+|+||+.|+|- ...+-.|+...|.- .+..++..|...
T Consensus 59 ~gl~d~~G~~~------~d~~~~~~~~~~~d~~~~~~~~~ii~~C~~~ 100 (137)
T 1dqe_A 59 LNMLDPEGNLH------HGNAMEFAKKHGADETMAQQLIDIVHGCEKS 100 (137)
T ss_dssp TTCBCTTSSBC------HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCc------HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc
Confidence 68999999993 45566777777654 467888888764
No 399
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=26.13 E-value=70 Score=23.30 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=24.3
Q ss_pred EEEcHHHHHHHHHHHHhcCCccHHHHHhh
Q 026130 189 IYISQAEMKAVADYIKRQGRVSISHLASK 217 (243)
Q Consensus 189 IYIS~eEl~aVA~fI~~rGRVSi~eLa~~ 217 (243)
|||+++--..+-.+-.++| +||+++++.
T Consensus 39 i~i~~~lh~rlK~~Aa~~g-~Smsdvvre 66 (76)
T 1p94_A 39 VNFDEEKHTRFKAACARKG-TSITDVVNQ 66 (76)
T ss_dssp EEEEHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 8999998888888888888 899998864
No 400
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=26.00 E-value=85 Score=22.19 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcC
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMG 176 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g 176 (243)
++-..+|..+....-..+.++|..||++..-+-.-++.....|
T Consensus 9 e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 9 EFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 3445566555433135688999999997766666666666544
No 401
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.96 E-value=4.2e+02 Score=25.82 Aligned_cols=12 Identities=0% Similarity=0.293 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhc
Q 026130 135 LLADFVEYIKKH 146 (243)
Q Consensus 135 lL~~Fi~yIK~~ 146 (243)
.|+.=|+.++..
T Consensus 571 ~~~~ei~~l~~~ 582 (592)
T 1f5n_A 571 IMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555555544
No 402
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=25.83 E-value=31 Score=30.81 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=15.5
Q ss_pred HHhcCCcceeee-CCCCeEEEcHH
Q 026130 172 LENMGRLSGVMD-DRGKYIYISQA 194 (243)
Q Consensus 172 Le~~g~LtGViD-DRGKFIYIS~e 194 (243)
|++.+-..=|+. ++|+++|||+.
T Consensus 32 LqaldGF~~vvs~~~G~i~yvS~s 55 (320)
T 4dj2_A 32 LRNQDTFSVAVSFLTGRIVYISEQ 55 (320)
T ss_dssp TSCSSEEEEEEETTTCBEEEECTH
T ss_pred HhccCCEEEEEECCCceEEEECcH
Confidence 344444444555 57999999975
No 403
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=25.75 E-value=1.4e+02 Score=19.38 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=35.9
Q ss_pred HHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 142 YIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 142 yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
.+...+=+...+||...|++. ..|.++. .|+. .+|.+.+..+|.++. |++.+|.
T Consensus 17 ~~r~~~g~s~~~lA~~~gis~-~~i~~~e--------------~g~~-~~~~~~l~~ia~~l~----~~~~~l~ 70 (76)
T 3bs3_A 17 VVLAEKQRTNRWLAEQMGKSE-NTISRWC--------------SNKS-QPSLDMLVKVAELLN----VDPRQLI 70 (76)
T ss_dssp HHHHHTTCCHHHHHHHHTCCH-HHHHHHH--------------TTSS-CCCHHHHHHHHHHHT----SCGGGGB
T ss_pred HHHHHcCCCHHHHHHHHCcCH-HHHHHHH--------------cCCC-CCCHHHHHHHHHHHC----cCHHHHh
Confidence 333444466799999999964 4555553 2333 368899999999883 5666554
No 404
>3gud_A NECK appendage protein; 3-helix bundle, chaperon, chaperone; HET: PEG; 2.20A {Bacillus phage ga-1}
Probab=25.70 E-value=57 Score=26.45 Aligned_cols=56 Identities=16% Similarity=0.255 Sum_probs=38.1
Q ss_pred HcCCChHHHHHHHHHHHhcC------------CcceeeeCCCCeEE----------EcHHHHHHH-HHHHHhc-CCccHH
Q 026130 157 EFKLRTQECINRITSLENMG------------RLSGVMDDRGKYIY----------ISQAEMKAV-ADYIKRQ-GRVSIS 212 (243)
Q Consensus 157 ~F~lrtqd~I~RIq~Le~~g------------~LtGViDDRGKFIY----------IS~eEl~aV-A~fI~~r-GRVSi~ 212 (243)
|||+-.|+|+.-+...=-+. .-++|+|+.|+-|| |-.+|+..+ +.+++.+ +|+|+.
T Consensus 44 H~G~iAQ~v~~af~~~GLd~~~yg~ic~D~w~~~~~~~dedGn~i~~~~paG~ryg~RyeE~~~le~A~~Rr~~~~~~~~ 123 (129)
T 3gud_A 44 HFGVIAQQIVKVFEDEGLSAFDYGLVGYDEWEATEDEYDSEGNLVEKGREAGNIYSIRPTECQWLEMACMRRKLERLSLE 123 (129)
T ss_dssp EEECCHHHHHHHHHHTTCCGGGGTSEEEEECCCCCCEECSSSCEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHTTC--
T ss_pred EechhHHHHHHHHHHcCCCHHHeeeEEeccccccccccCCCCCeeeecccccceeeecHHHHHHHHHHHHHHHHHHhhhh
Confidence 89999999988766521111 12467889999887 677888876 4566555 888864
No 405
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.67 E-value=1.7e+02 Score=20.28 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
+...|..+...+=+...+||...|++. ..|+++. +|+. .+|.+.+..+|.++. |++.+|.
T Consensus 10 ~~~~lk~~r~~~glsq~~lA~~~gis~-~~is~~e--------------~G~~-~p~~~~l~~ia~~l~----v~~~~l~ 69 (94)
T 2kpj_A 10 FSENLNSYIAKSEKTQLEIAKSIGVSP-QTFNTWC--------------KGIA-IPRMGKVQALADYFN----INKSDLI 69 (94)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHTCCH-HHHHHHH--------------TTSC-CCCHHHHHHHHHHHT----CCTHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHH--------------hCCC-CCCHHHHHHHHHHHC----cCHHHHh
Confidence 445555555666678899999999964 4555553 2332 258899999999984 8888886
Q ss_pred hh
Q 026130 216 SK 217 (243)
Q Consensus 216 ~~ 217 (243)
..
T Consensus 70 ~~ 71 (94)
T 2kpj_A 70 ED 71 (94)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 406
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.58 E-value=37 Score=24.12 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=23.7
Q ss_pred EcHHHHHHHHHHHHhcC---CccHHHHHhhcc
Q 026130 191 ISQAEMKAVADYIKRQG---RVSISHLASKSN 219 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rG---RVSi~eLa~~sN 219 (243)
||++-=..|-.|++..| ++|..+||...+
T Consensus 11 ~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg 42 (77)
T 1qgp_A 11 IYQDQEQRILKFLEELGEGKATTAHDLSGKLG 42 (77)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC
Confidence 45544467889999999 999999999877
No 407
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=25.52 E-value=1.6e+02 Score=21.14 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+...|..+...+=+...+||...|++. ..|.+|.. |+. .+|.+-+..+|.++. |++.+|
T Consensus 28 ~ig~~lr~~R~~~gltq~elA~~~gis~-~~is~iE~--------------G~~-~ps~~~l~~ia~~l~----v~~~~l 87 (99)
T 3g5g_A 28 KVSFVIKKIRLEKGMTQEDLAYKSNLDR-TYISGIER--------------NSR-NLTIKSLELIMKGLE----VSDVVF 87 (99)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHHT--------------TCS-CCBHHHHHHHHHHTT----CCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCH-HHHHHHHC--------------CCC-CCCHHHHHHHHHHHC----cCHHHH
Confidence 4555566666666678999999999954 45555532 332 479999999999874 788887
Q ss_pred Hhh
Q 026130 215 ASK 217 (243)
Q Consensus 215 a~~ 217 (243)
...
T Consensus 88 ~~~ 90 (99)
T 3g5g_A 88 FEM 90 (99)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
No 408
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=25.27 E-value=1.4e+02 Score=21.80 Aligned_cols=50 Identities=14% Similarity=0.314 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCccee
Q 026130 132 DRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGV 181 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGV 181 (243)
.+.|+.+-+.||....-..+.=|=++|.+--.-+-.-|..|+..|-+..-
T Consensus 8 ~D~Ly~~A~~~V~~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp~ 57 (73)
T 2ve8_A 8 DDPLYDEAVRFVTESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTPM 57 (73)
T ss_dssp CCTTHHHHHHHHHHHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCCC
T ss_pred ccHHHHHHHHHHHhcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCcc
Confidence 46788999999999999999999999999999999999999999987653
No 409
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=25.09 E-value=97 Score=25.99 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=40.8
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeC--CC---CeEEEcHHHHHHHHHHHHhcC
Q 026130 159 KLRTQECINRITSLENMGRLSGVMDD--RG---KYIYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~LtGViDD--RG---KFIYIS~eEl~aVA~fI~~rG 207 (243)
+++...+---++.|+++|-|+..... .| |+-.||+.-...+..++..--
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~~ 121 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSDV 121 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSCC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhccc
Confidence 68888888899999999999987642 22 577799999999999998753
No 410
>3g13_A Putative conjugative transposon recombinase; resolvase, PSI-II, target 11223F, structural genomics, prote structure initiative; 2.00A {Clostridium difficile}
Probab=25.07 E-value=80 Score=24.65 Aligned_cols=52 Identities=8% Similarity=0.088 Sum_probs=40.2
Q ss_pred chhHHHHHHHHHHhcC--ccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeC
Q 026130 132 DRDLLADFVEYIKKHK--CIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDD 184 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~K--vV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDD 184 (243)
...-|+.++++|+..+ +|++.+|.+-.- ++.+++.-|..|...|.-.=++++
T Consensus 60 ~Rp~l~~ll~~~~~g~id~vvv~~ldRl~R-~~~~~~~~~~~l~~~gv~l~~~~~ 113 (169)
T 3g13_A 60 KREDFQRMINDCMNGEIDMVFTKSISRFAR-NTLDTLKYVRMLKERNIAVYFEDE 113 (169)
T ss_dssp CSHHHHHHHHHHHTTCCSEEEESCHHHHCS-SHHHHHHHHHHHHTTTCEEEETTT
T ss_pred CCHHHHHHHHHHHcCCCcEEEEEecccccc-ChHHHHHHHHHHHHcCCEEEEecC
Confidence 3456899999999994 577788876554 899999999999998865444443
No 411
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=24.94 E-value=1.8e+02 Score=21.23 Aligned_cols=30 Identities=3% Similarity=0.133 Sum_probs=16.8
Q ss_pred EEcHHHHHHHHHHH--HhcCCccHHHHHhhcc
Q 026130 190 YISQAEMKAVADYI--KRQGRVSISHLASKSN 219 (243)
Q Consensus 190 YIS~eEl~aVA~fI--~~rGRVSi~eLa~~sN 219 (243)
.+|++++..+-..+ ..-|.||..++.....
T Consensus 133 ~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~ 164 (169)
T 3qrx_A 133 NLTEEELQEMIAEADRNDDNEIDEDEFIRIMK 164 (169)
T ss_dssp CCCHHHHHHHHHHHCCSSSSCBCHHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 35555555554444 2347777777666543
No 412
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=24.93 E-value=77 Score=26.27 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.6
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
.|..|+|++-.+..+..-|..||.=|..+|.
T Consensus 129 ~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~ 159 (219)
T 1s96_A 129 HARSIFILPPSKIELDRRLRGRGQDSEEVIA 159 (219)
T ss_dssp TCEEEEEECSSHHHHHHHHHTTSCSCHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHcCCCCHHHHH
Confidence 5899999998888888889999977766654
No 413
>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*
Probab=24.87 E-value=34 Score=25.80 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeE-EEcHHHHHHHHHHHH--hcCCcc
Q 026130 134 DLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYI-YISQAEMKAVADYIK--RQGRVS 210 (243)
Q Consensus 134 ~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI-YIS~eEl~aVA~fI~--~rGRVS 210 (243)
..|..++.-++-..+..- .+...-+.+..+++..+.. ..-.-.-|+|+.|+|+ +||...+-... +. ..+..+
T Consensus 8 ~~l~~~l~~~~v~~im~~-~~~v~~~~~~~~a~~~m~~--~~~~~~~Vvd~~~~~~Givt~~dl~~~~--~~~~~~~~~~ 82 (159)
T 3fv6_A 8 QLLADKLKKLQVKDFQSI-PVVIHENVSVYDAICTMFL--EDVGTLFVVDRDAVLVGVLSRKDLLRAS--IGQQELTSVP 82 (159)
T ss_dssp HHHHHHHTTCBGGGSCBC-CCEEETTSBHHHHHHHHHH--HTCSEEEEECTTSCEEEEEEHHHHHHHH--TSCSCTTTCB
T ss_pred HHHHHHHhhCCHHHHcCC-CEEECCCCcHHHHHHHHHH--CCCCEEEEEcCCCcEEEEEeHHHHHHHh--hccCcccCcC
Confidence 345555554444444331 2344556667777766554 2234567889889998 67877664421 11 113445
Q ss_pred HHHHHhhcccccccccch
Q 026130 211 ISHLASKSNQFIDLETKA 228 (243)
Q Consensus 211 i~eLa~~sN~lI~L~p~~ 228 (243)
+.++......++.+.|..
T Consensus 83 v~~~m~~~~~~~~v~~~~ 100 (159)
T 3fv6_A 83 VHIIMTRMPNITVCRRED 100 (159)
T ss_dssp GGGTSEETTSCCCBCTTS
T ss_pred HHHHHcCCCCcEEECCCC
Confidence 566654433555555543
No 414
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=24.58 E-value=32 Score=23.32 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=13.7
Q ss_pred cceeeeCCCCeEEEcHH
Q 026130 178 LSGVMDDRGKYIYISQA 194 (243)
Q Consensus 178 LtGViDDRGKFIYIS~e 194 (243)
+.-++|..|+|+|+++.
T Consensus 11 ~i~~~d~~g~i~~~n~~ 27 (117)
T 3f1p_A 11 FLSEHSMDMKFTYCDDR 27 (117)
T ss_dssp EEEEECTTCBEEEECTH
T ss_pred EEEEECCCceEEEECcC
Confidence 34567889999999985
No 415
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=24.55 E-value=1.8e+02 Score=21.30 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHH
Q 026130 135 LLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHL 214 (243)
Q Consensus 135 lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eL 214 (243)
.+...|..+...+=+...+||...|++. ..|.+|.. |+ ..+|.+-+..+|.++. ||+.+|
T Consensus 12 ~~g~~lk~~R~~~glsq~~lA~~~gis~-~~is~~E~--------------g~-~~p~~~~l~~ia~~l~----v~~~~l 71 (126)
T 3ivp_A 12 ALGLAIKEARKKQGLTREQVGAMIEIDP-RYLTNIEN--------------KG-QHPSLQVLYDLVSLLN----VSVDEF 71 (126)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHHH--------------SC-CCCCHHHHHHHHHHHT----CCSHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCcCH-HHHHHHHC--------------CC-CCCCHHHHHHHHHHHC----cCHHHH
Confidence 3556666666667778999999999964 55666543 44 2378999999999885 788777
Q ss_pred Hhhc
Q 026130 215 ASKS 218 (243)
Q Consensus 215 a~~s 218 (243)
....
T Consensus 72 ~~~~ 75 (126)
T 3ivp_A 72 FLPA 75 (126)
T ss_dssp HSCC
T ss_pred hCCC
Confidence 6543
No 416
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=24.54 E-value=11 Score=30.96 Aligned_cols=44 Identities=18% Similarity=0.525 Sum_probs=31.5
Q ss_pred cceee---eCCCCeEEEcHHHHHHHHHHHHhc-CCccHH-HHHhhcccccc
Q 026130 178 LSGVM---DDRGKYIYISQAEMKAVADYIKRQ-GRVSIS-HLASKSNQFID 223 (243)
Q Consensus 178 LtGVi---DDRGKFIYIS~eEl~aVA~fI~~r-GRVSi~-eLa~~sN~lI~ 223 (243)
||-+| |..|+| +|..||+.+..|+..- =|+++. -|..+++.||+
T Consensus 5 ~t~~i~~aD~~gRy--ls~~eL~~l~~~~~~~~~Rl~aa~~l~~na~~Iv~ 53 (162)
T 2vml_A 5 ITEVIASADSQGRF--LNNTELQAANGRFQRATASMEAARALTSNADSLVK 53 (162)
T ss_dssp HHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455 778886 7999999999999863 466653 56666666654
No 417
>2wcj_A General odorant-binding protein 1; transport protein, olfaction, transport, disulfide bond, insect pheremone, sensory transduction; HET: M21; 1.40A {Bombyx mori} PDB: 2wc6_A* 2wch_A* 2wck_A 2wcl_A* 2wcm_A* 2wc5_A*
Probab=24.51 E-value=39 Score=26.48 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.8
Q ss_pred ceeeeCCCCeEEEcHHHHHHHHHHHHhcCCc-----cHHHHHhhcccc
Q 026130 179 SGVMDDRGKYIYISQAEMKAVADYIKRQGRV-----SISHLASKSNQF 221 (243)
Q Consensus 179 tGViDDRGKFIYIS~eEl~aVA~fI~~rGRV-----Si~eLa~~sN~l 221 (243)
+|+||+.|+|- .+.+-.|+...|.- .+..++..|+..
T Consensus 59 ~gl~d~~G~~~------~d~~~~~~~~~~~d~~~~~~~~~ii~~C~~~ 100 (141)
T 2wcj_A 59 FSLMDDDVRMH------HVNMDEYIKSFPNGQVLAEKMVKLIHNCEKQ 100 (141)
T ss_dssp TTCBCTTSSBC------HHHHHHHHHTSTTTHHHHHHHHHHHHHHHHH
T ss_pred cCCcCCCCCCc------HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCc
Confidence 68899999983 45566777776654 366788888764
No 418
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.47 E-value=18 Score=31.25 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=10.1
Q ss_pred hcCccchHHHHHHcCCChHHHHHHHHH
Q 026130 145 KHKCIPLEDLAAEFKLRTQECINRITS 171 (243)
Q Consensus 145 ~~KvV~LEdLA~~F~lrtqd~I~RIq~ 171 (243)
.+|.|.|.+||.++|-+-+++|..+.+
T Consensus 132 ~~ky~~lg~ls~~~Gwk~~~vv~~le~ 158 (203)
T 2zkr_j 132 TRKFAYLGRLAHEVGWKYQAVTATLEE 158 (203)
T ss_dssp CSCEEEHHHHC----------------
T ss_pred CCceEEHHHHHHHhCccHHHHHHHHHH
Confidence 579999999999999999999887664
No 419
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=24.43 E-value=42 Score=20.51 Aligned_cols=14 Identities=7% Similarity=0.216 Sum_probs=12.3
Q ss_pred eeeCCCCeEEEcHH
Q 026130 181 VMDDRGKYIYISQA 194 (243)
Q Consensus 181 ViDDRGKFIYIS~e 194 (243)
++|..|+++|+++.
T Consensus 7 ~~d~~g~i~~~N~~ 20 (96)
T 3a0s_A 7 TLSKDGRITEWNKK 20 (96)
T ss_dssp EEETTSBEEEECHH
T ss_pred EEcCCCCEeehhHH
Confidence 58899999999975
No 420
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=24.32 E-value=1.2e+02 Score=20.63 Aligned_cols=61 Identities=18% Similarity=0.247 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
|..++..+...+=+...+||..+|++ +..|.++.. |+. .+|.+.+..+|.++. |++.+|.
T Consensus 18 l~~~l~~~R~~~glsq~~lA~~~gis-~~~is~~e~--------------g~~-~~~~~~l~~ia~~l~----v~~~~l~ 77 (92)
T 1lmb_3 18 LKAIYEKKKNELGLSQESVADKMGMG-QSGVGALFN--------------GIN-ALNAYNAALLAKILK----VSVEEFS 77 (92)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSC-HHHHHHHHT--------------TSS-CCCHHHHHHHHHHHT----SCGGGTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcC-HHHHHHHHc--------------CCC-CCCHHHHHHHHHHHC----CCHHHHh
Confidence 44444444455556789999999995 556666542 332 378889999999885 6776664
Q ss_pred h
Q 026130 216 S 216 (243)
Q Consensus 216 ~ 216 (243)
.
T Consensus 78 ~ 78 (92)
T 1lmb_3 78 P 78 (92)
T ss_dssp H
T ss_pred h
Confidence 3
No 421
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=24.28 E-value=56 Score=23.70 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCCeEEEcHHHHHHHHHHHHhcCCc-cHHHHHhhc
Q 026130 185 RGKYIYISQAEMKAVADYIKRQGRV-SISHLASKS 218 (243)
Q Consensus 185 RGKFIYIS~eEl~aVA~fI~~rGRV-Si~eLa~~s 218 (243)
.|+-|.+|+.|+.-+.-++...|+| |..+|....
T Consensus 26 ~g~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~v 60 (106)
T 1gxq_A 26 GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHV 60 (106)
T ss_dssp TTEECCCCHHHHHHHHHHHHSCSSEECHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHH
Confidence 5888999999999999999999985 567888765
No 422
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=24.10 E-value=1.6e+02 Score=19.44 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHH
Q 026130 136 LADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLA 215 (243)
Q Consensus 136 L~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa 215 (243)
+...|..+...+=+...+||...|++. ..|.+|. . |+. .+|.+.+..++..|...=-|++.+|.
T Consensus 11 ~~~~l~~~r~~~glsq~~lA~~~gis~-~~i~~~e---~-----------g~~-~~~~~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 11 LVQLLTKLRKEASLSQSELAIFLGLSQ-SDISKIE---S-----------FER-RLDALELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCH-HHHHHHH---T-----------TSS-CCBHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCH-HHHHHHH---c-----------CCC-CCCHHHHHHHHHHHccccCCCHHHHH
Confidence 444555555556667899999999964 4555554 2 332 26777888888877777678888887
Q ss_pred hhc
Q 026130 216 SKS 218 (243)
Q Consensus 216 ~~s 218 (243)
...
T Consensus 75 ~~~ 77 (84)
T 2ef8_A 75 KDT 77 (84)
T ss_dssp HHH
T ss_pred ccc
Confidence 543
No 423
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=24.05 E-value=1.8e+02 Score=20.00 Aligned_cols=46 Identities=20% Similarity=0.285 Sum_probs=33.3
Q ss_pred CChHHHHHHHHHHHhcCCcceeeeC---C---CCe--EEEcHHHHHHHHHHHHhcC
Q 026130 160 LRTQECINRITSLENMGRLSGVMDD---R---GKY--IYISQAEMKAVADYIKRQG 207 (243)
Q Consensus 160 lrtqd~I~RIq~Le~~g~LtGViDD---R---GKF--IYIS~eEl~aVA~fI~~rG 207 (243)
..+.+-+.-|+.|.....+. +|+ + |.. |.|+|..+..+-.|++..|
T Consensus 8 ~~~~~q~~~L~~L~~~~~~d--f~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~~ 61 (79)
T 1vjq_A 8 PTNEEQVAFLEALAKQDELN--FDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAKG 61 (79)
T ss_dssp CCSHHHHHHHHHHHTSCCTT--CEESSCCCSTTCCEEEEECGGGHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhccCceE--EEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHCC
Confidence 45777888899987643331 212 2 444 7899999999999999887
No 424
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=23.93 E-value=1.3e+02 Score=24.71 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=49.4
Q ss_pred chhHHHHHHH-------HHHhcCccchHHHHHHcC-----CChHHHHHHHHHHHhcCCcceeeeCCCCeEEEcHHHHHHH
Q 026130 132 DRDLLADFVE-------YIKKHKCIPLEDLAAEFK-----LRTQECINRITSLENMGRLSGVMDDRGKYIYISQAEMKAV 199 (243)
Q Consensus 132 ~~~lL~~Fi~-------yIK~~KvV~LEdLA~~F~-----lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aV 199 (243)
+..++..|++ |+..+.=-...-++..++ +....+...+..+... +..+.+.|=.++++.+..+
T Consensus 203 ~p~~v~~~~~a~~~a~~~~~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~~~ 277 (302)
T 3ix1_A 203 SGEVLAAFWRAALKGYEWMVENPDEALNVLLTNQDEANFPLIQEVEEESLSILLEK-----MENPNGPFGGQDAESWEEV 277 (302)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTSCTTTSCCCHHHHHHHHHHHHHH-----HCCTTSSTBCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhccccccccCHHHHHHHHHHHHHH-----hhcccCCCCccCHHHHHHH
Confidence 4566777776 455553333444666666 5554333333333211 1123344446889999999
Q ss_pred HHHHHhcCCccH-HHHHhhccccc
Q 026130 200 ADYIKRQGRVSI-SHLASKSNQFI 222 (243)
Q Consensus 200 A~fI~~rGRVSi-~eLa~~sN~lI 222 (243)
++|+.+.|-++- -++...-++||
T Consensus 278 ~~~l~~~G~i~~~~~~~~~~~n~~ 301 (302)
T 3ix1_A 278 ISWLDAHDWLEQPVVAEDAFSSIT 301 (302)
T ss_dssp HHHHHHTTCCSSCCCHHHHBCCCC
T ss_pred HHHHHHCCCCCCCCCHHHHhccCC
Confidence 999999997753 24444445544
No 425
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=23.54 E-value=21 Score=31.89 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=17.7
Q ss_pred HHhcCCcceeee-CCCCeEEEcHH
Q 026130 172 LENMGRLSGVMD-DRGKYIYISQA 194 (243)
Q Consensus 172 Le~~g~LtGViD-DRGKFIYIS~e 194 (243)
|++.+...-|+. |.|+++|||+.
T Consensus 32 L~aldgF~~vvs~~~G~i~yvS~~ 55 (317)
T 4dj3_A 32 SKNTDTFAAVFSFLSGRLVHISEQ 55 (317)
T ss_dssp TSCTTEEEEEEETTTCBEEEECTT
T ss_pred HhccCCEEEEEEcCCcEEEEECCH
Confidence 556666777787 57999999974
No 426
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=23.51 E-value=62 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=21.8
Q ss_pred EcHHHHHHHHHHHHhcCC----ccHHHHHhhcccccccccchhhh
Q 026130 191 ISQAEMKAVADYIKRQGR----VSISHLASKSNQFIDLETKAQFV 231 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rGR----VSi~eLa~~sN~lI~L~p~~~~~ 231 (243)
+|++|+..||.-+...|. |+-.++.....++.+=.|...+.
T Consensus 44 Ltddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi 88 (107)
T 3ol3_A 44 LTEDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEI 88 (107)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHH
Confidence 455555555555555544 44455555555555555555543
No 427
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=23.42 E-value=41 Score=23.66 Aligned_cols=16 Identities=25% Similarity=0.617 Sum_probs=14.6
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++|+.+|+.||...
T Consensus 81 Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 81 LGDAEVSALISYLEEE 96 (110)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8999999999999863
No 428
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=23.32 E-value=43 Score=22.42 Aligned_cols=15 Identities=7% Similarity=0.215 Sum_probs=12.4
Q ss_pred eeeeCCCCeEEEcHH
Q 026130 180 GVMDDRGKYIYISQA 194 (243)
Q Consensus 180 GViDDRGKFIYIS~e 194 (243)
=++|..|+++|+++.
T Consensus 33 ~~~d~~g~i~~~N~~ 47 (125)
T 3fc7_A 33 VHLTTNGTILSVNPS 47 (125)
T ss_dssp EEEETTSBEEEECHH
T ss_pred EEEcCCCeEEEECHH
Confidence 346889999999974
No 429
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}
Probab=23.20 E-value=43 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHhcC------CcceeeeCCC-CeEEEcHHHHHHHHHHHHhc
Q 026130 160 LRTQECINRITSLENMG------RLSGVMDDRG-KYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 160 lrtqd~I~RIq~Le~~g------~LtGViDDRG-KFIYIS~eEl~aVA~fI~~r 206 (243)
--.++++++|.+.+... .|..+.-++| -.|+|+++.|..|+.|++..
T Consensus 75 ~~~d~v~d~L~e~l~~~~~~f~~~i~~~~~~~~eltl~V~~e~l~~v~~~Lkd~ 128 (213)
T 3mcr_A 75 AYFDEVADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDD 128 (213)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHEEEEEEETTEEEEEECGGGHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhcccccccceeEEEEECCEEEEEEcHHHHHHHHHHHHhC
Confidence 55689999998877653 3555555566 45889999999999999986
No 430
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=23.17 E-value=18 Score=30.89 Aligned_cols=79 Identities=10% Similarity=0.102 Sum_probs=41.7
Q ss_pred cchHHHHHHcCCChHHHHHH---------HHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHHHHhcCCccHHHHHhhcc
Q 026130 149 IPLEDLAAEFKLRTQECINR---------ITSLENMGRLSGVMDDRGKYIYISQAEMKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~R---------Iq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
...++||..||++...|-++ |+++..+|.|+-- .=-.+..+++++...|+..|...| +|+.++-....
T Consensus 135 ~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~--~A~~L~~l~~~~q~~l~~~i~~~~-lsv~~~e~lv~ 211 (230)
T 1vz0_A 135 LTQEEVARRVGKARSTVANALRLLQLPPEALEALERGEITAG--HARALLMLEPEDRLWGLKEILEKG-LSVRQAEALRE 211 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHH--HHHHHHTSCGGGHHHHHHHHHHTC-CCHHHHCC---
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHH--HHHHHHcCCcHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 45789999999988776554 4445555555310 001234566777677888877654 78887777776
Q ss_pred cccccccchhhhh
Q 026130 220 QFIDLETKAQFVE 232 (243)
Q Consensus 220 ~lI~L~p~~~~~~ 232 (243)
.+ +.|...+.+
T Consensus 212 ~~--~~~~~~~~~ 222 (230)
T 1vz0_A 212 RL--AMAPKRSAE 222 (230)
T ss_dssp -------------
T ss_pred Hh--hCccccccc
Confidence 65 466665543
No 431
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=23.03 E-value=40 Score=23.24 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=13.9
Q ss_pred EcHHHHHHHHHHHHh
Q 026130 191 ISQAEMKAVADYIKR 205 (243)
Q Consensus 191 IS~eEl~aVA~fI~~ 205 (243)
+|++++.+|+.||+.
T Consensus 83 ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 83 LSEREVAALIEFIKQ 97 (99)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999999975
No 432
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.81 E-value=71 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=28.8
Q ss_pred chhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHH
Q 026130 132 DRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRIT 170 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq 170 (243)
....|...++||....-+.|++||..+|++..-.....+
T Consensus 77 ~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk 115 (133)
T 1u8b_A 77 RLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFK 115 (133)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455788888999745567899999999998554444443
No 433
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=22.77 E-value=56 Score=23.48 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=14.8
Q ss_pred HHHhcCC-cceeeeCCCCeE-EEcHH
Q 026130 171 SLENMGR-LSGVMDDRGKYI-YISQA 194 (243)
Q Consensus 171 ~Le~~g~-LtGViDDRGKFI-YIS~e 194 (243)
.|...+. ...|+|+.|+|+ +||..
T Consensus 93 ~~~~~~~~~lpVvd~~g~~~Giit~~ 118 (128)
T 3gby_A 93 SVAAAKCSVVPLADEDGRYEGVVSRK 118 (128)
T ss_dssp HHHHCSSSEEEEECTTCBEEEEEEHH
T ss_pred HHHhCCCcEEEEECCCCCEEEEEEHH
Confidence 3344443 367999999988 34443
No 434
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=22.60 E-value=18 Score=28.64 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=0.0
Q ss_pred cchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEEc
Q 026130 149 IPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYIS 192 (243)
Q Consensus 149 V~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYIS 192 (243)
+...+||..+|++.+-+-.-++.|..+|.|. -.|+.|+|.
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~----~~~~~i~I~ 204 (213)
T 1o5l_A 165 VTLEELSRLFGCARPALSRVFQELEREGYIE----KHGRRIKVL 204 (213)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCeEE----EcCCEEEEe
Confidence 5688999999998888888889999988653 334446554
No 435
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.51 E-value=1.3e+02 Score=18.87 Aligned_cols=33 Identities=12% Similarity=0.335 Sum_probs=26.3
Q ss_pred CCCeEEEc--HHHHHHHHHHHHhcCCccHHHHHhhcc
Q 026130 185 RGKYIYIS--QAEMKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 185 RGKFIYIS--~eEl~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
.|.+..++ ++....|..+. ..| .|..+++...|
T Consensus 8 ~g~~~~l~~~~~~~~~i~~l~-~~g-~s~~eIA~~lg 42 (55)
T 2x48_A 8 QGVRYYVESEDDLVSVAHELA-KMG-YTVQQIANALG 42 (55)
T ss_dssp TTEEEEECSHHHHHHHHHHHH-HTT-CCHHHHHHHHT
T ss_pred ccHHHHHhcCHHHHHHHHHHH-HcC-CCHHHHHHHHC
Confidence 67887899 99999888874 566 59999988655
No 436
>1ryl_A Hypothetical protein YFBM; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Escherichia coli} SCOP: d.276.1.1
Probab=22.43 E-value=74 Score=25.97 Aligned_cols=29 Identities=14% Similarity=0.253 Sum_probs=23.1
Q ss_pred CeEEEcH-HHHHHHHHHHHhcCCccHHHHHhhc
Q 026130 187 KYIYISQ-AEMKAVADYIKRQGRVSISHLASKS 218 (243)
Q Consensus 187 KFIYIS~-eEl~aVA~fI~~rGRVSi~eLa~~s 218 (243)
=|||+|+ +++..||+++.. +++..|...-
T Consensus 83 ~~~~~t~~~~V~~ia~aL~~---~~~~~l~~~f 112 (167)
T 1ryl_A 83 GFLGLTWNQELAATIDRLES---LDRNELRKQF 112 (167)
T ss_dssp CEEEEECHHHHHHHHHHHHH---CCHHHHHHHC
T ss_pred ceEEeccHHHHHHHHHHHHc---CCHHHHHHhC
Confidence 3788888 589999999986 4788877764
No 437
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=22.38 E-value=86 Score=24.82 Aligned_cols=64 Identities=11% Similarity=0.209 Sum_probs=52.5
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeeeC-CCCeEEEcHHHHHHHHHHHHhcCCccHHHHHhhcccccccccc
Q 026130 158 FKLRTQECINRITSLENMGRLSGVMDD-RGKYIYISQAEMKAVADYIKRQGRVSISHLASKSNQFIDLETK 227 (243)
Q Consensus 158 F~lrtqd~I~RIq~Le~~g~LtGViDD-RGKFIYIS~eEl~aVA~fI~~rGRVSi~eLa~~sN~lI~L~p~ 227 (243)
||..+.++---|..+..-|.|.=.... .|.+|||.=.--...-+-++..|.+= ..|-+|-..|.
T Consensus 30 FGFp~~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii------~g~~mIGV~p~ 94 (119)
T 1wwh_A 30 FGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIF------GESIMIGVKPC 94 (119)
T ss_dssp ECCCGGGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEE------TTTEECEEEEC
T ss_pred ECCCHHHHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEe------cCCEEEEEEEC
Confidence 899999999999999999999988764 89999999888888888888899873 13456666664
No 438
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=22.37 E-value=45 Score=26.26 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=20.2
Q ss_pred eCCCCeEEEcHHHHHHHHHHHHhc
Q 026130 183 DDRGKYIYISQAEMKAVADYIKRQ 206 (243)
Q Consensus 183 DDRGKFIYIS~eEl~aVA~fI~~r 206 (243)
|+.-+.++||++-...|..||+.+
T Consensus 80 d~~kr~~~Vs~egh~~vk~f~Kr~ 103 (108)
T 3dom_A 80 DDKKKKFFISKEGNSQVLDFAKRK 103 (108)
T ss_dssp EGGGTEEEEEGGGHHHHHHHHHHH
T ss_pred cCCccEEEEeccchHHHHHHHHHH
Confidence 677888889998888999999765
No 439
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=22.07 E-value=1.1e+02 Score=23.04 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=4.5
Q ss_pred EcHHHHHHHH
Q 026130 191 ISQAEMKAVA 200 (243)
Q Consensus 191 IS~eEl~aVA 200 (243)
||..|+..+.
T Consensus 80 i~~~ef~~~~ 89 (190)
T 1fpw_A 80 IHFEEFITVL 89 (190)
T ss_dssp ECHHHHHHHH
T ss_pred EeHHHHHHHH
Confidence 4444444433
No 440
>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0
Probab=22.04 E-value=55 Score=24.04 Aligned_cols=33 Identities=3% Similarity=0.049 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHhcCCcceeeeCCCCeE-EEcHHH
Q 026130 159 KLRTQECINRITSLENMGRLSGVMDDRGKYI-YISQAE 195 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~LtGViDDRGKFI-YIS~eE 195 (243)
+.+..+++. .|...+. .-|+|+.|+|+ .||...
T Consensus 103 ~~~l~~a~~---~~~~~~~-l~Vvd~~g~~~Giit~~d 136 (150)
T 3lqn_A 103 EDSFAKALE---MTIDHPF-ICAVNEDGYFEGILTRRA 136 (150)
T ss_dssp TCBHHHHHH---HHHHCSE-EEEECTTCBEEEEEEHHH
T ss_pred CCCHHHHHH---HHHhCCE-EEEECCCCcEEEEEEHHH
Confidence 344455544 4455564 88999999997 344433
No 441
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=22.04 E-value=73 Score=27.24 Aligned_cols=87 Identities=10% Similarity=0.175 Sum_probs=53.8
Q ss_pred cchhHHHHHHH-------HHHhcCccchHHHHHHcCCChHHHHH-HHHHHHhcCCcceeeeCCCCeEEEcHHHHHHHHHH
Q 026130 131 GDRDLLADFVE-------YIKKHKCIPLEDLAAEFKLRTQECIN-RITSLENMGRLSGVMDDRGKYIYISQAEMKAVADY 202 (243)
Q Consensus 131 ~~~~lL~~Fi~-------yIK~~KvV~LEdLA~~F~lrtqd~I~-RIq~Le~~g~LtGViDDRGKFIYIS~eEl~aVA~f 202 (243)
++.+++..|+. ||..|.==-.+.++..+.-...++.. .++. ..+.++..| +.++..+..+++|
T Consensus 215 ~~Pe~v~~fl~A~~ka~~~~~~nP~eA~~i~~~~~p~~~~~l~~~~~~~------~~~~~~~~~---~~~~~~w~~~~~~ 285 (342)
T 4esw_A 215 ENPQAVKKFLKAIKRATDYMLAHPREAWAEYGNFKPTMQTDLNTKKFQR------CYAYFSESL---YNVHRDWRKVNNY 285 (342)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSGGGGSHHHHHHHHH------HHTTBCSSC---CCCHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHhCccCCHHHHHHHHHH------hhhhcCccc---ccCHHHHHHHHHH
Confidence 46677888887 56555422333455554333333333 3332 234455554 5789999999999
Q ss_pred HHhcCCccHHHHHhhccccccccc
Q 026130 203 IKRQGRVSISHLASKSNQFIDLET 226 (243)
Q Consensus 203 I~~rGRVSi~eLa~~sN~lI~L~p 226 (243)
+.+.|-+...=-....|.++++.-
T Consensus 286 l~~~g~l~~d~~~~~TNefl~~~~ 309 (342)
T 4esw_A 286 GKRLDILPENYVPNYTNEYLSWPE 309 (342)
T ss_dssp HHHTTSSCTTCCCCBCCTTCCSCC
T ss_pred HHHCCCCCCcCccchhhhhhCccc
Confidence 999999875311358899998653
No 442
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=22.04 E-value=3.1e+02 Score=22.84 Aligned_cols=77 Identities=21% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHHHhcCccchHHHHHH----c-------CCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE---cHHHH-HHHHHHH
Q 026130 139 FVEYIKKHKCIPLEDLAAE----F-------KLRTQECINRITSLENMGRLSGVMDDRGKYIYI---SQAEM-KAVADYI 203 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~----F-------~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI---S~eEl-~aVA~fI 203 (243)
+++|-+.+|+-.|.--.+. | .|+.+.+..-|..|...|...=+ |..+.-++| |++|+ ..|-+||
T Consensus 37 Il~ycr~~k~~~l~~~~~~~~pLF~N~~I~R~Ls~e~~~~il~~L~~~g~aew~-d~~~~~~~I~Wrt~~eWa~~iy~wv 115 (176)
T 3cuq_C 37 VLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEWL-DKSKSSFLIMWRRPEEWGKLIYQWV 115 (176)
T ss_dssp HHHHHHHHTCCEEEHHHHHTSTTSEETTTTEECCHHHHHHHHHHHHHHTSEEEC-SSSSSEEEECSSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCeeEeeccccccCCCcCCccccCcCCHHHHHHHHHHHHhcCCceee-cCCCCEEEEEeCCHHHHHHHHHHHH
Q ss_pred HhcC----CccHHHHHh
Q 026130 204 KRQG----RVSISHLAS 216 (243)
Q Consensus 204 ~~rG----RVSi~eLa~ 216 (243)
...| =+++-||++
T Consensus 116 ~~~G~~~sV~TlyEL~~ 132 (176)
T 3cuq_C 116 SRSGQNNSVFTLYELTN 132 (176)
T ss_dssp HTTTCCSCEEEHHHHHH
T ss_pred HhcCCcCcEEEEeeecc
No 443
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.03 E-value=1.5e+02 Score=24.12 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhcCCcce------eee-------CCCCeEEEcHHHHHHHHHHHHhcCC-ccHHHHHhh
Q 026130 160 LRTQECINRITSLENMGRLSG------VMD-------DRGKYIYISQAEMKAVADYIKRQGR-VSISHLASK 217 (243)
Q Consensus 160 lrtqd~I~RIq~Le~~g~LtG------ViD-------DRGKFIYIS~eEl~aVA~fI~~rGR-VSi~eLa~~ 217 (243)
+...+++.+|..+...+.... ++| ..|..+.+|+.|++-+.-++...|+ +|..+|+..
T Consensus 139 ~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll~~g~~~~~s~~eIa~~ 210 (249)
T 3q9s_A 139 FHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQPGRVYSRQEIGQE 210 (249)
T ss_dssp CCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHSTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHHHHCCCceEcHHHHHHH
Confidence 577899999999987654221 122 2466777999999999999998888 567888874
No 444
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=21.98 E-value=90 Score=22.64 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=14.3
Q ss_pred EcHHHHHHHHHH--H--HhcCCccHHHHHhhcc
Q 026130 191 ISQAEMKAVADY--I--KRQGRVSISHLASKSN 219 (243)
Q Consensus 191 IS~eEl~aVA~f--I--~~rGRVSi~eLa~~sN 219 (243)
+|++++..+-.. + ...|+||..++.....
T Consensus 117 ~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 149 (156)
T 1wdc_C 117 LSDEDVDEIIKLTDLQEDLEGNVKYEDFVKKVM 149 (156)
T ss_dssp CCHHHHHHHHHHHTCCCCTTSEEEHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCCCcEeHHHHHHHHh
Confidence 444444444443 1 2346666666655543
No 445
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=21.96 E-value=46 Score=30.16 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=27.9
Q ss_pred CccchHHHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCC-eEEEcHHHHHH
Q 026130 147 KCIPLEDLAAEFKLRTQECINRITSLENMGRLSGVMDDRGK-YIYISQAEMKA 198 (243)
Q Consensus 147 KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGK-FIYIS~eEl~a 198 (243)
..+.+.|||..-|+.+.|||..++. .|.|. -.+|. .|.|++.-++.
T Consensus 207 ~~isi~~is~~T~i~~~Dii~tL~~---l~~l~---~~kg~~~i~~~~~~i~~ 253 (278)
T 2pq8_A 207 GTLSIKDLSQMTSITQNDIISTLQS---LNMVK---YWKGQHVICVTPKLVEE 253 (278)
T ss_dssp ----CHHHHHHHCBCHHHHHHHHHH---TTCEE---C----CEECCCHHHHHH
T ss_pred CCccHHHHHHHhCCCHHHHHHHHHH---CCCEE---EeCCcEEEEECHHHHHH
Confidence 3789999999999999999876555 45553 23454 56677765443
No 446
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.94 E-value=24 Score=34.42 Aligned_cols=56 Identities=18% Similarity=0.284 Sum_probs=35.2
Q ss_pred ccchHHHHHHcCCC-hHHHHHHHHHHHhcCCcceeeeCCCCeE--------EEcHHHHHHHHHHH
Q 026130 148 CIPLEDLAAEFKLR-TQECINRITSLENMGRLSGVMDDRGKYI--------YISQAEMKAVADYI 203 (243)
Q Consensus 148 vV~LEdLA~~F~lr-tqd~I~RIq~Le~~g~LtGViDDRGKFI--------YIS~eEl~aVA~fI 203 (243)
-+.|.|+|...+|. ..++-.-|..+..+|.|-|.||-...|+ |-|.+=+.++.+-|
T Consensus 401 rIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI 465 (523)
T 4b4t_S 401 KISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERI 465 (523)
T ss_dssp EECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC--------------
T ss_pred cccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHH
Confidence 57899999999996 4567777999999999999999765554 55666566655544
No 447
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=21.90 E-value=95 Score=24.45 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=36.8
Q ss_pred HcCCChHHHHHHHHHHHhcCCcceeeeC---CC---CeEEEcHHHHHHHHHHHH
Q 026130 157 EFKLRTQECINRITSLENMGRLSGVMDD---RG---KYIYISQAEMKAVADYIK 204 (243)
Q Consensus 157 ~F~lrtqd~I~RIq~Le~~g~LtGViDD---RG---KFIYIS~eEl~aVA~fI~ 204 (243)
.|+++..-+---++.|+.+|-|+...+. .| ||..||+.-...+..++.
T Consensus 63 ~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~ 116 (138)
T 2e1n_A 63 NYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQ 116 (138)
T ss_dssp TEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHH
Confidence 3578888888899999999999997653 23 688899876666666554
No 448
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=21.81 E-value=44 Score=26.88 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=33.7
Q ss_pred cCCChHHHHHHHHHHHhcCCcceeeeC------CCCeEEEcHHHHHHHHHH
Q 026130 158 FKLRTQECINRITSLENMGRLSGVMDD------RGKYIYISQAEMKAVADY 202 (243)
Q Consensus 158 F~lrtqd~I~RIq~Le~~g~LtGViDD------RGKFIYIS~eEl~aVA~f 202 (243)
++++..-+---|..|+.+|-|+...+. +=||..||+.-...+..+
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~ 124 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDL 124 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHH
Confidence 468888888899999999999997643 237888998644443333
No 449
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=21.65 E-value=64 Score=22.27 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=14.2
Q ss_pred CCcceeeeCCCCeEEEcHH
Q 026130 176 GRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 176 g~LtGViDDRGKFIYIS~e 194 (243)
....-++|..|+|+|+++.
T Consensus 21 ~d~i~~~d~~g~i~~vN~a 39 (117)
T 2r78_A 21 IDGIFIMDAEGHYLDVNPA 39 (117)
T ss_dssp SSEEEEECTTSBEEEECHH
T ss_pred CceEEEECCCCCEEEecHH
Confidence 3334467889999999884
No 450
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=21.61 E-value=68 Score=20.68 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=14.5
Q ss_pred CCcceeeeCCCCeEEEcHH
Q 026130 176 GRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 176 g~LtGViDDRGKFIYIS~e 194 (243)
....-++|..|+++|+++.
T Consensus 13 ~~~i~~~d~~g~i~~~N~~ 31 (114)
T 3luq_A 13 PAALAMFDREMRYLAVSRR 31 (114)
T ss_dssp SSEEEEEETTCBEEEECHH
T ss_pred CceEEEEcCCcEEEEECHH
Confidence 3344567999999999984
No 451
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=21.61 E-value=99 Score=21.91 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.3
Q ss_pred cCccchHHHHHHcCCChHHHHHHHHHHHhcC
Q 026130 146 HKCIPLEDLAAEFKLRTQECINRITSLENMG 176 (243)
Q Consensus 146 ~KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g 176 (243)
.+...|++.|...||....++..|+...+.-
T Consensus 38 a~~~tL~~Aa~~~gid~~~ll~~Ln~~~~~~ 68 (73)
T 2k5e_A 38 AQNESLEQGANAHGLNVEDILRDLNALALEH 68 (73)
T ss_dssp GGGSBHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred cccccHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999887653
No 452
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=21.39 E-value=48 Score=23.31 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=14.0
Q ss_pred EcHHHHHHHHHHHHh
Q 026130 191 ISQAEMKAVADYIKR 205 (243)
Q Consensus 191 IS~eEl~aVA~fI~~ 205 (243)
+|++|+.+|+.||..
T Consensus 87 ls~~ei~~l~~yl~~ 101 (103)
T 2zzs_A 87 LSDDDIANLAAYYSS 101 (103)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 899999999999975
No 453
>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1
Probab=21.39 E-value=18 Score=29.00 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred HhcCCcceeeeCCCCeEE--EcHHHHHHHHHHHHhcCCccHHHHHh
Q 026130 173 ENMGRLSGVMDDRGKYIY--ISQAEMKAVADYIKRQGRVSISHLAS 216 (243)
Q Consensus 173 e~~g~LtGViDDRGKFIY--IS~eEl~aVA~fI~~rGRVSi~eLa~ 216 (243)
.+.-.++|++-|-|.|-| .|+.-+.+++..+...| +....+.+
T Consensus 138 ~A~~l~~gI~~DTg~f~~~~tt~~~~~~aa~L~~~~g-~d~~~i~~ 182 (188)
T 1wpn_A 138 IAGLMLSAIISDSLLFKSPTCTDQDVAAAKELAEIAG-VDAEEYGL 182 (188)
T ss_dssp HHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHT-SCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 444567899999999999 57888888877775677 45555543
No 454
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=21.36 E-value=1.9e+02 Score=20.58 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=25.3
Q ss_pred ccccchhHHHHHHHHHHhcCccchHHHHHHcCCChHHHHHHHHHHHh
Q 026130 128 VQDGDRDLLADFVEYIKKHKCIPLEDLAAEFKLRTQECINRITSLEN 174 (243)
Q Consensus 128 ~~~~~~~lL~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~ 174 (243)
+-......|..|+.|+....+..+.+ ++..++.+-+..|..
T Consensus 28 Ti~~Y~~~l~~f~~~l~~~~~~~l~~------it~~~i~~y~~~l~~ 68 (117)
T 3nrw_A 28 SIKSFRYRLKHFVEWAEERDITAMRE------LTGWKLDEYETFRRG 68 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSGGG------CCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHH------CCHHHHHHHHHHHHh
Confidence 33445566778888876655444433 556677777777654
No 455
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=21.36 E-value=1.7e+02 Score=26.85 Aligned_cols=53 Identities=9% Similarity=0.141 Sum_probs=38.2
Q ss_pred HHHHHHhcCccchHHHHHHcCCChHHH----HHHHHHHHhcCCcceeeeCCCCeEEEcHHH
Q 026130 139 FVEYIKKHKCIPLEDLAAEFKLRTQEC----INRITSLENMGRLSGVMDDRGKYIYISQAE 195 (243)
Q Consensus 139 Fi~yIK~~KvV~LEdLA~~F~lrtqd~----I~RIq~Le~~g~LtGViDDRGKFIYIS~eE 195 (243)
++.-+....=|.+.++...||+...+. +..|+.|...|.|. ..|..|.+|+.-
T Consensus 373 ~~~~Lr~~~g~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~gll~----~~~~~~~lT~~G 429 (457)
T 1olt_A 373 VIKSLICNFRLDYSPIEQQWDLLFADYFAEDLKLLAPLAKDGLVD----VDEKGIQVTAKG 429 (457)
T ss_dssp HHHHHHHHSEEEHHHHHHHTTCCHHHHTHHHHHHHHHHHHTTSEE----ECSSEEEECTTT
T ss_pred HHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE----EECCEEEECHhh
Confidence 344455666688888999999985443 57788999998764 245678888763
No 456
>1ywy_A Hypothetical protein PA2021; PAT85, NESG, GFT-structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Pseudomonas aeruginosa} SCOP: b.55.2.1
Probab=21.33 E-value=48 Score=24.62 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.8
Q ss_pred eeeCCCCeEEEcHHHHHHHH
Q 026130 181 VMDDRGKYIYISQAEMKAVA 200 (243)
Q Consensus 181 ViDDRGKFIYIS~eEl~aVA 200 (243)
|+.=.|+-||||+.|-+++.
T Consensus 40 v~~l~g~Rv~ItEaEAdaLt 59 (74)
T 1ywy_A 40 VLYIDGKRLHISEEDAQRLV 59 (74)
T ss_dssp EEEETTCCEECCHHHHHHHH
T ss_pred EEEEcCcEEeccHHHhhhee
Confidence 34446999999999988864
No 457
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=21.26 E-value=41 Score=29.83 Aligned_cols=57 Identities=19% Similarity=0.316 Sum_probs=42.3
Q ss_pred HHhcCCcceee-eCCCCe-EEEcHHHHHHHHHHHHhcC-CccHHHHHhhcccccccccchh
Q 026130 172 LENMGRLSGVM-DDRGKY-IYISQAEMKAVADYIKRQG-RVSISHLASKSNQFIDLETKAQ 229 (243)
Q Consensus 172 Le~~g~LtGVi-DDRGKF-IYIS~eEl~aVA~fI~~rG-RVSi~eLa~~sN~lI~L~p~~~ 229 (243)
++..|.- -|. |+.|.| ||-.|+.+.+|.+-+...| -+.-++|.-.-|..+.|++...
T Consensus 157 aleaGAe-Dv~~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~~ 216 (249)
T 1kon_A 157 ALEAGAE-DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETA 216 (249)
T ss_dssp HHHHTCS-EEEECTTSCEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCCCCCTTTS
T ss_pred HHhCCCc-eeeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCCceecCHHHH
Confidence 3334443 455 667888 8889999999999999998 4445788888888888876543
No 458
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.24 E-value=2e+02 Score=21.55 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhc-CccchHHHHHHcCCChHHHHHHHHHHHhcCCcc
Q 026130 135 LLADFVEYIKKH-KCIPLEDLAAEFKLRTQECINRITSLENMGRLS 179 (243)
Q Consensus 135 lL~~Fi~yIK~~-KvV~LEdLA~~F~lrtqd~I~RIq~Le~~g~Lt 179 (243)
+-+..++.++.. +=|..-|||-..|+...+|=..|..|-++|.|.
T Consensus 20 ~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 20 LEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 345666777665 899999999999999999999999999999964
No 459
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=21.24 E-value=2.5e+02 Score=24.21 Aligned_cols=63 Identities=8% Similarity=0.077 Sum_probs=45.5
Q ss_pred HHHHhcCccchHHHHHHcCCChHHHHHHHHHHHh----cCCcceeeeCCCCeEEEcHHHHHH-HHHHHH
Q 026130 141 EYIKKHKCIPLEDLAAEFKLRTQECINRITSLEN----MGRLSGVMDDRGKYIYISQAEMKA-VADYIK 204 (243)
Q Consensus 141 ~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq~Le~----~g~LtGViDDRGKFIYIS~eEl~a-VA~fI~ 204 (243)
-|+... =|.+.+||.-|++...++..-|..|.+ .|+=.=|+---|.|-+.|..++.. |..|+.
T Consensus 24 Lf~a~e-pvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~ 91 (219)
T 2z99_A 24 LLVIDT-PVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL 91 (219)
T ss_dssp HHHCSS-CBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred HHHcCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 355444 499999999999999988888888865 455344555678899888888753 344443
No 460
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=21.18 E-value=1.9e+02 Score=21.65 Aligned_cols=16 Identities=6% Similarity=0.139 Sum_probs=10.0
Q ss_pred cCCccHHHHHhhcccc
Q 026130 206 QGRVSISHLASKSNQF 221 (243)
Q Consensus 206 rGRVSi~eLa~~sN~l 221 (243)
.|.|+..++......+
T Consensus 77 ~G~i~~~ef~~~~~~~ 92 (190)
T 2l2e_A 77 NGYIDFKEFICALSVT 92 (190)
T ss_dssp TTCEEHHHHHHHHTTS
T ss_pred CCeEeHHHHHHHHHHH
Confidence 4677777776665443
No 461
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=21.04 E-value=73 Score=26.43 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhcCCccHHHHHhhccc
Q 026130 194 AEMKAVADYIKRQGRVSISHLASKSNQ 220 (243)
Q Consensus 194 eEl~aVA~fI~~rGRVSi~eLa~~sN~ 220 (243)
+=...+...|+++|+|++.+|+...|-
T Consensus 12 eR~~~i~~~l~~~~~~~~~~la~~~~v 38 (190)
T 4a0z_A 12 KRREAIRQQIDSNPFITDHELSDLFQV 38 (190)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCEeHHHHHHHHCC
Confidence 445778899999999999999998873
No 462
>1mw7_A Hypothetical protein HP0162; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Helicobacter pylori} SCOP: e.39.1.1
Probab=20.87 E-value=32 Score=30.37 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=39.1
Q ss_pred eeeeCCCCe-EEEcHHHHHHHHHHHHhcC-CccHHHHHhhcccccccccch
Q 026130 180 GVMDDRGKY-IYISQAEMKAVADYIKRQG-RVSISHLASKSNQFIDLETKA 228 (243)
Q Consensus 180 GViDDRGKF-IYIS~eEl~aVA~fI~~rG-RVSi~eLa~~sN~lI~L~p~~ 228 (243)
-|.|+.|.| ||-.|+.+.+|.+-+...| -+.-++|.-.-|..+.|++..
T Consensus 165 Dv~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~~v~l~~e~ 215 (240)
T 1mw7_A 165 ELEEVEDKIIIRGDYNSFKLLNEGFESLKLPILKASLQRIATTPIELNDEQ 215 (240)
T ss_dssp EEEEETTEEEEEEEGGGHHHHHHHHHHTTCCCSEEEEEEEESSCBCCCHHH
T ss_pred eeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEeCCCCCcccCHHH
Confidence 556767888 8888999999999999998 444578888888888886544
No 463
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=20.75 E-value=58 Score=23.77 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCccHHHHHhhcc
Q 026130 196 MKAVADYIKRQGRVSISHLASKSN 219 (243)
Q Consensus 196 l~aVA~fI~~rGRVSi~eLa~~sN 219 (243)
-+.|..|++.+|-++..+||..++
T Consensus 13 ~~~IL~~Lk~~g~~ta~eiA~~Lg 36 (79)
T 1xmk_A 13 KEKICDYLFNVSDSSALNLAKNIG 36 (79)
T ss_dssp HHHHHHHHHHTCCEEHHHHHHHHC
T ss_pred HHHHHHHHHHcCCcCHHHHHHHcC
Confidence 357889999999999999999875
No 464
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=20.75 E-value=55 Score=25.99 Aligned_cols=43 Identities=14% Similarity=0.153 Sum_probs=36.7
Q ss_pred EcHHHHHHHHHHHHhcCC-------ccHHHHHhhcccccccccchhhhhh
Q 026130 191 ISQAEMKAVADYIKRQGR-------VSISHLASKSNQFIDLETKAQFVED 233 (243)
Q Consensus 191 IS~eEl~aVA~fI~~rGR-------VSi~eLa~~sN~lI~L~p~~~~~~~ 233 (243)
+|++|+..||.-+...|. ||-.++.....++.+=.|...+...
T Consensus 41 LtdeEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~R 90 (112)
T 2m0n_A 41 LTEEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISR 90 (112)
T ss_dssp CCHHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHH
Confidence 799999999999988877 7778999999999988888887643
No 465
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=20.75 E-value=70 Score=21.67 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.5
Q ss_pred CCcceeeeCCCCeEEEcHH
Q 026130 176 GRLSGVMDDRGKYIYISQA 194 (243)
Q Consensus 176 g~LtGViDDRGKFIYIS~e 194 (243)
....-++|..|.|+|+++.
T Consensus 27 ~~~i~~~d~~g~i~~~N~a 45 (126)
T 3bwl_A 27 PDMIDVLDADGTICEVNQR 45 (126)
T ss_dssp SSEEEEECTTCBEEEECHH
T ss_pred CcEEEEEcCCCCEEEEcHH
Confidence 3344567889999999885
No 466
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.60 E-value=49 Score=19.87 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=21.5
Q ss_pred HHHHHHHHhcCccchHHHHHHcCCChHHHHHHHH
Q 026130 137 ADFVEYIKKHKCIPLEDLAAEFKLRTQECINRIT 170 (243)
Q Consensus 137 ~~Fi~yIK~~KvV~LEdLA~~F~lrtqd~I~RIq 170 (243)
...+.++... ..+.+||..||++..-+-..++
T Consensus 12 ~~i~~l~~~g--~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 12 EQISRLLEKG--HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHHHHHHHTT--CCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCCHHHHHHHHH
Confidence 3444444433 6789999999998776555443
No 467
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=20.55 E-value=32 Score=34.21 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=13.7
Q ss_pred CCChHHHHHHHHHHHhcCCc
Q 026130 159 KLRTQECINRITSLENMGRL 178 (243)
Q Consensus 159 ~lrtqd~I~RIq~Le~~g~L 178 (243)
|+-=.=+|+-|-.|...|.|
T Consensus 443 GICGSGlid~va~l~~~Gii 462 (631)
T 3zyy_X 443 GICGSGLIDLLANLKRAGII 462 (631)
T ss_dssp EECHHHHHHHHHHHHHHTSB
T ss_pred eEchhHHHHHHHHHHHCCCC
Confidence 45556778888888776544
No 468
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=20.47 E-value=60 Score=26.46 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=18.4
Q ss_pred chHHHHHHcCCChHHHHHHHH
Q 026130 150 PLEDLAAEFKLRTQECINRIT 170 (243)
Q Consensus 150 ~LEdLA~~F~lrtqd~I~RIq 170 (243)
.|+++|.+-||+++++|++.-
T Consensus 16 DL~~vA~~~gls~~evi~~h~ 36 (141)
T 2zp2_A 16 DLEEVAKINQLSPEEVIDIHT 36 (141)
T ss_dssp THHHHHHHTTCCHHHHHHHHT
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 589999999999999998753
No 469
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=20.47 E-value=1.6e+02 Score=22.45 Aligned_cols=66 Identities=15% Similarity=0.156 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHhcCccchH---HHHHHcCCChHHHHHHHHHHHhcCCcceeeeCCCCeEEE-------------cHHH
Q 026130 132 DRDLLADFVEYIKKHKCIPLE---DLAAEFKLRTQECINRITSLENMGRLSGVMDDRGKYIYI-------------SQAE 195 (243)
Q Consensus 132 ~~~lL~~Fi~yIK~~KvV~LE---dLA~~F~lrtqd~I~RIq~Le~~g~LtGViDDRGKFIYI-------------S~eE 195 (243)
+...+..|+......=.++++ +|+..||+.. -.-+=|||..|+.+|. +.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~-------------~P~~~lid~~G~i~~~g~~~~~~~~~g~~~~~~ 149 (188)
T 2cvb_A 83 APEKMAAFAEEHGIFFPYLLDETQEVAKAYRALR-------------TPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHD 149 (188)
T ss_dssp SHHHHHHHHHHHTCCSCEEECSSSHHHHHTTCCE-------------ESEEEEECTTCBEEEEECSSSCTTCGGGCCCCH
T ss_pred CHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC-------------CCeEEEECCCCcEEEEEecCCccccccccCHHH
Confidence 344455555543322222222 4788888652 1234578889999998 6677
Q ss_pred HHHHHHHHHhcCCcc
Q 026130 196 MKAVADYIKRQGRVS 210 (243)
Q Consensus 196 l~aVA~fI~~rGRVS 210 (243)
|...-.-+.....++
T Consensus 150 l~~~i~~ll~~~~~~ 164 (188)
T 2cvb_A 150 LEAAIEALLRGEEPP 164 (188)
T ss_dssp HHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHcCCCCC
Confidence 766655555444443
No 470
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=20.39 E-value=2.5e+02 Score=22.18 Aligned_cols=48 Identities=15% Similarity=0.060 Sum_probs=37.9
Q ss_pred HcCCChHHHHHHHHHHHhcCCcceeee----CCC---CeEEEcHHHHH--HHHHHHH
Q 026130 157 EFKLRTQECINRITSLENMGRLSGVMD----DRG---KYIYISQAEMK--AVADYIK 204 (243)
Q Consensus 157 ~F~lrtqd~I~RIq~Le~~g~LtGViD----DRG---KFIYIS~eEl~--aVA~fI~ 204 (243)
-|.++.-.+---+..|+++|-|+...- .++ ||--||+.+-. ...+|..
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~~ 105 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKV 105 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHHH
Confidence 456666677778999999999999887 455 99999998877 6666654
No 471
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=20.11 E-value=51 Score=24.73 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhc
Q 026130 191 ISQAEMKAVADYIKRQ 206 (243)
Q Consensus 191 IS~eEl~aVA~fI~~r 206 (243)
+|++++.+|+.||...
T Consensus 107 Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 107 LTEKDLVAIAGHILVE 122 (137)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8999999999999863
No 472
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.08 E-value=91 Score=27.12 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=40.2
Q ss_pred cCCChHHHHHHHHHHHhcCCcceee--eCCCCeEEEcHHHHHHHHHHHHh--cCCcc
Q 026130 158 FKLRTQECINRITSLENMGRLSGVM--DDRGKYIYISQAEMKAVADYIKR--QGRVS 210 (243)
Q Consensus 158 F~lrtqd~I~RIq~Le~~g~LtGVi--DDRGKFIYIS~eEl~aVA~fI~~--rGRVS 210 (243)
..+...-+..-|..|...| +.||+ -.-|-|.++|.+|...|..+... .|||.
T Consensus 17 g~iD~~~l~~lv~~li~~G-v~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~p 72 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVASG-TSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIP 72 (292)
T ss_dssp SCBCHHHHHHHHHHHHHHT-CCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSC
T ss_pred CCcCHHHHHHHHHHHHHcC-CCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCc
Confidence 3455666666777787776 68864 56899999999999999999876 47864
Done!