Query 026131
Match_columns 243
No_of_seqs 210 out of 1478
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3332 N-acetylglucosaminyl p 100.0 1.6E-46 3.4E-51 314.8 21.4 199 36-241 34-233 (247)
2 TIGR03446 mycothiol_Mca mycoth 100.0 4.9E-36 1.1E-40 266.4 19.3 190 41-233 2-241 (283)
3 TIGR03445 mycothiol_MshB 1D-my 100.0 4.1E-35 8.9E-40 260.9 19.5 185 43-232 1-236 (284)
4 COG2120 Uncharacterized protei 100.0 6.1E-35 1.3E-39 253.9 16.8 182 36-234 7-197 (237)
5 PRK02122 glucosamine-6-phospha 100.0 1.6E-32 3.4E-37 267.5 20.2 179 36-235 366-607 (652)
6 PF02585 PIG-L: GlcNAc-PI de-N 100.0 1.1E-31 2.3E-36 211.8 12.3 119 43-167 1-128 (128)
7 PF01012 ETF: Electron transfe 94.4 0.18 4E-06 40.8 7.3 91 41-146 1-98 (164)
8 cd01715 ETF_alpha The electron 93.6 0.92 2E-05 37.0 10.0 90 41-146 1-91 (168)
9 PF12683 DUF3798: Protein of u 92.3 0.38 8.2E-06 42.7 6.1 88 55-145 117-206 (275)
10 cd01985 ETF The electron trans 89.7 4.1 8.9E-05 33.4 9.8 46 94-146 54-99 (181)
11 PRK00726 murG undecaprenyldiph 85.7 3.9 8.5E-05 36.8 7.9 92 40-146 2-99 (357)
12 PF04007 DUF354: Protein of un 85.0 7.9 0.00017 35.6 9.5 89 40-145 1-90 (335)
13 PRK11677 hypothetical protein; 83.0 1.2 2.7E-05 35.5 2.9 25 1-25 1-27 (134)
14 cd03796 GT1_PIG-A_like This fa 81.0 11 0.00024 34.5 9.0 93 42-148 2-98 (398)
15 COG2025 FixB Electron transfer 80.4 20 0.00043 32.7 10.1 88 40-146 1-88 (313)
16 PF13477 Glyco_trans_4_2: Glyc 79.8 18 0.00038 27.6 8.5 82 42-147 2-83 (139)
17 cd01714 ETF_beta The electron 79.6 15 0.00033 30.9 8.7 85 44-146 32-116 (202)
18 PRK09814 beta-1,6-galactofuran 79.5 12 0.00025 33.8 8.5 70 70-147 3-73 (333)
19 PF00763 THF_DHG_CYH: Tetrahyd 79.5 21 0.00045 27.4 8.8 91 58-162 18-109 (117)
20 cd03808 GT1_cap1E_like This fa 78.8 15 0.00032 31.4 8.7 88 41-146 1-88 (359)
21 TIGR03088 stp2 sugar transfera 77.9 13 0.00028 33.4 8.3 81 40-146 2-89 (374)
22 TIGR00824 EIIA-man PTS system, 77.5 23 0.0005 27.1 8.4 67 71-151 3-71 (116)
23 PRK12342 hypothetical protein; 77.4 24 0.00052 31.1 9.5 80 64-157 48-127 (254)
24 PLN00022 electron transfer fla 76.8 24 0.00052 32.8 9.7 95 37-145 24-124 (356)
25 PF10740 DUF2529: Protein of u 76.3 4 8.6E-05 33.9 4.0 37 36-74 79-115 (172)
26 COG0381 WecB UDP-N-acetylgluco 74.6 20 0.00044 33.6 8.6 106 42-167 7-113 (383)
27 TIGR01133 murG undecaprenyldip 73.2 19 0.00042 31.8 8.1 20 126-145 78-97 (348)
28 PRK09417 mogA molybdenum cofac 72.4 30 0.00065 29.2 8.5 90 68-169 4-94 (193)
29 cd03785 GT1_MurG MurG is an N- 71.3 14 0.00029 32.9 6.6 20 126-145 77-96 (350)
30 PRK01021 lpxB lipid-A-disaccha 70.1 26 0.00057 34.8 8.6 25 125-149 297-321 (608)
31 cd00886 MogA_MoaB MogA_MoaB fa 70.0 38 0.00083 27.0 8.4 61 91-166 25-86 (152)
32 cd04951 GT1_WbdM_like This fam 69.2 25 0.00054 30.7 7.8 21 127-147 68-88 (360)
33 PF13377 Peripla_BP_3: Peripla 68.8 49 0.0011 25.5 8.7 99 61-181 2-104 (160)
34 TIGR02667 moaB_proteo molybden 68.4 25 0.00055 28.6 7.1 63 91-168 27-90 (163)
35 COG2249 MdaB Putative NADPH-qu 66.7 4.4 9.6E-05 34.1 2.3 30 40-72 1-35 (189)
36 cd03818 GT1_ExpC_like This fam 66.5 47 0.001 30.2 9.3 21 59-79 16-36 (396)
37 cd06294 PBP1_ycjW_transcriptio 66.4 60 0.0013 27.2 9.4 73 63-145 117-190 (270)
38 PRK03359 putative electron tra 65.8 52 0.0011 29.0 9.0 72 61-145 46-119 (256)
39 PF05706 CDKN3: Cyclin-depende 65.6 6.1 0.00013 32.7 2.8 74 57-138 61-134 (168)
40 cd04962 GT1_like_5 This family 64.2 8.2 0.00018 34.3 3.7 22 125-146 71-92 (371)
41 cd01994 Alpha_ANH_like_IV This 64.0 57 0.0012 27.4 8.5 76 60-144 16-94 (194)
42 PF07364 DUF1485: Protein of u 62.8 64 0.0014 29.1 9.1 115 46-168 29-178 (292)
43 PRK11303 DNA-binding transcrip 61.9 77 0.0017 27.7 9.5 73 61-145 172-245 (328)
44 cd03812 GT1_CapH_like This fam 61.3 81 0.0018 27.5 9.6 81 41-146 1-88 (358)
45 PRK05749 3-deoxy-D-manno-octul 60.2 1.4E+02 0.0031 27.5 12.0 34 39-72 49-82 (425)
46 COG2086 FixA Electron transfer 59.9 97 0.0021 27.5 9.5 73 61-146 47-119 (260)
47 COG3105 Uncharacterized protei 59.6 7.9 0.00017 30.7 2.3 27 1-27 6-34 (138)
48 cd00758 MoCF_BD MoCF_BD: molyb 58.4 70 0.0015 24.8 7.7 60 90-166 23-83 (133)
49 TIGR02417 fruct_sucro_rep D-fr 57.8 1E+02 0.0022 27.0 9.5 75 59-145 169-245 (327)
50 cd03814 GT1_like_2 This family 57.7 29 0.00063 30.0 6.0 20 127-146 72-91 (364)
51 cd06274 PBP1_FruR Ligand bindi 57.6 1.1E+02 0.0025 25.5 9.7 80 56-145 103-185 (264)
52 cd03823 GT1_ExpE7_like This fa 57.5 15 0.00033 31.7 4.2 22 125-146 83-104 (359)
53 PF04273 DUF442: Putative phos 57.3 75 0.0016 24.2 7.4 73 60-144 20-93 (110)
54 TIGR02470 sucr_synth sucrose s 57.0 17 0.00036 37.3 4.7 62 18-80 233-319 (784)
55 PRK13384 delta-aminolevulinic 56.0 85 0.0018 28.7 8.5 75 70-146 34-120 (322)
56 PF02662 FlpD: Methyl-viologen 55.8 53 0.0011 25.6 6.5 51 60-110 45-101 (124)
57 PLN02871 UDP-sulfoquinovose:DA 55.2 49 0.0011 31.2 7.4 19 129-147 135-153 (465)
58 cd06272 PBP1_hexuronate_repres 54.9 85 0.0018 26.3 8.3 110 50-181 94-208 (261)
59 PF13579 Glyco_trans_4_4: Glyc 54.9 7.9 0.00017 29.4 1.7 70 58-145 9-80 (160)
60 cd03811 GT1_WabH_like This fam 54.4 59 0.0013 27.5 7.3 22 125-146 68-89 (353)
61 PRK10703 DNA-binding transcrip 54.2 98 0.0021 27.3 8.9 74 62-145 172-246 (341)
62 PF14097 SpoVAE: Stage V sporu 53.9 1.1E+02 0.0025 25.4 8.3 62 72-150 2-64 (180)
63 cd03799 GT1_amsK_like This is 53.5 34 0.00075 29.8 5.8 38 42-79 2-40 (355)
64 PRK10014 DNA-binding transcrip 53.0 1.6E+02 0.0034 25.9 10.0 74 62-145 176-250 (342)
65 cd06299 PBP1_LacI_like_13 Liga 52.9 1.1E+02 0.0023 25.6 8.6 100 61-181 109-211 (265)
66 PHA03392 egt ecdysteroid UDP-g 52.2 31 0.00067 33.4 5.6 35 41-75 22-57 (507)
67 PRK10423 transcriptional repre 52.1 1.6E+02 0.0035 25.6 9.9 74 62-145 168-242 (327)
68 cd03786 GT1_UDP-GlcNAc_2-Epime 52.0 1.5E+02 0.0033 26.2 9.9 90 42-145 3-95 (363)
69 PF13439 Glyco_transf_4: Glyco 51.6 38 0.00082 26.0 5.2 21 125-145 67-87 (177)
70 PTZ00063 histone deacetylase; 51.2 25 0.00054 33.6 4.6 28 126-155 238-265 (436)
71 PRK11916 electron transfer fla 51.1 1.8E+02 0.0039 26.5 10.0 81 41-145 6-86 (312)
72 cd00384 ALAD_PBGS Porphobilino 50.8 1.2E+02 0.0025 27.8 8.5 75 70-146 24-110 (314)
73 PTZ00346 histone deacetylase; 50.7 28 0.00061 33.1 4.9 29 125-155 255-283 (429)
74 PRK09302 circadian clock prote 50.4 1.4E+02 0.0029 28.8 9.7 93 40-144 273-369 (509)
75 cd06298 PBP1_CcpA_like Ligand- 50.1 1.3E+02 0.0028 25.1 8.7 86 48-145 97-184 (268)
76 cd06287 PBP1_LacI_like_8 Ligan 50.0 1.6E+02 0.0036 25.1 12.3 79 56-145 106-185 (269)
77 TIGR00177 molyb_syn molybdenum 49.6 81 0.0018 24.9 6.8 60 90-166 31-91 (144)
78 PRK09526 lacI lac repressor; R 48.7 1.9E+02 0.0041 25.4 9.9 73 61-145 174-247 (342)
79 PRK10401 DNA-binding transcrip 48.3 1.7E+02 0.0037 25.9 9.5 75 61-145 169-244 (346)
80 TIGR00236 wecB UDP-N-acetylglu 48.3 1.1E+02 0.0024 27.5 8.4 88 43-145 5-93 (365)
81 PF06925 MGDG_synth: Monogalac 48.2 19 0.00042 29.1 3.0 23 125-147 76-98 (169)
82 PRK03363 fixB putative electro 47.7 1.7E+02 0.0037 26.6 9.3 81 41-145 6-87 (313)
83 cd00885 cinA Competence-damage 47.3 1.4E+02 0.0031 24.3 8.2 62 90-168 23-85 (170)
84 cd06278 PBP1_LacI_like_2 Ligan 46.8 1.7E+02 0.0036 24.3 9.2 71 63-145 110-181 (266)
85 PRK10727 DNA-binding transcrip 46.7 1.7E+02 0.0036 25.9 9.2 74 62-145 170-244 (343)
86 COG0123 AcuC Deacetylases, inc 46.4 27 0.00058 32.2 3.9 26 127-154 228-253 (340)
87 TIGR03679 arCOG00187 arCOG0018 46.3 1.4E+02 0.003 25.5 8.1 77 60-145 14-93 (218)
88 PRK14169 bifunctional 5,10-met 45.5 2.2E+02 0.0048 25.6 9.6 85 60-158 21-106 (282)
89 PF03054 tRNA_Me_trans: tRNA m 45.1 67 0.0015 29.8 6.4 50 60-112 17-72 (356)
90 PRK10125 putative glycosyl tra 44.7 48 0.001 30.9 5.5 33 41-78 2-41 (405)
91 PRK06849 hypothetical protein; 44.4 2E+02 0.0044 26.3 9.6 81 38-145 3-83 (389)
92 COG1519 KdtA 3-deoxy-D-manno-o 44.4 2.8E+02 0.0061 26.4 10.4 93 37-158 46-140 (419)
93 cd06308 PBP1_sensor_kinase_lik 44.3 1.9E+02 0.0042 24.3 10.3 82 50-145 103-189 (270)
94 COG0223 Fmt Methionyl-tRNA for 44.0 60 0.0013 29.5 5.8 84 40-146 2-87 (307)
95 cd00887 MoeA MoeA family. Memb 43.2 1.9E+02 0.0041 27.0 9.2 94 57-166 149-259 (394)
96 cd03807 GT1_WbnK_like This fam 42.7 1.6E+02 0.0035 25.0 8.3 65 62-146 24-88 (365)
97 PRK11041 DNA-binding transcrip 42.5 2E+02 0.0043 24.8 8.8 80 56-145 139-220 (309)
98 PRK04930 glutathione-regulated 42.4 72 0.0016 26.7 5.7 84 39-135 5-89 (184)
99 cd02008 TPP_IOR_alpha Thiamine 42.2 1.1E+02 0.0023 24.9 6.6 39 39-80 69-109 (178)
100 cd06285 PBP1_LacI_like_7 Ligan 41.8 2.1E+02 0.0045 23.9 8.8 69 83-170 128-197 (265)
101 COG1066 Sms Predicted ATP-depe 41.6 1E+02 0.0022 29.5 7.0 79 39-144 92-174 (456)
102 PRK14497 putative molybdopteri 41.4 2.2E+02 0.0047 28.1 9.5 91 58-165 161-269 (546)
103 PF14552 Tautomerase_2: Tautom 41.4 38 0.00082 24.5 3.4 65 41-107 2-69 (82)
104 PRK14175 bifunctional 5,10-met 41.3 2.4E+02 0.0053 25.3 9.2 84 61-158 24-108 (286)
105 TIGR03030 CelA cellulose synth 41.2 4E+02 0.0086 27.0 16.0 57 43-100 135-204 (713)
106 cd01574 PBP1_LacI Ligand-bindi 41.2 2.1E+02 0.0045 23.8 9.9 78 56-145 103-181 (264)
107 cd01537 PBP1_Repressors_Sugar_ 41.2 2E+02 0.0043 23.5 10.8 78 56-145 105-185 (264)
108 cd06302 PBP1_LsrB_Quorum_Sensi 41.1 2.4E+02 0.0051 24.4 10.3 81 57-145 109-192 (298)
109 PRK06988 putative formyltransf 40.9 1.6E+02 0.0034 26.6 8.1 83 40-146 3-85 (312)
110 PRK14740 kdbF potassium-transp 40.9 59 0.0013 18.9 3.3 23 1-23 1-25 (29)
111 PF00490 ALAD: Delta-aminolevu 40.7 1.4E+02 0.003 27.4 7.5 75 70-146 30-118 (324)
112 PRK01215 competence damage-ind 40.5 2E+02 0.0043 25.5 8.4 79 72-167 6-88 (264)
113 PRK09283 delta-aminolevulinic 40.2 2.5E+02 0.0055 25.8 9.1 75 70-146 32-118 (323)
114 COG1087 GalE UDP-glucose 4-epi 39.8 83 0.0018 28.8 5.9 59 59-146 16-75 (329)
115 PRK14190 bifunctional 5,10-met 39.8 2.7E+02 0.0059 25.0 9.2 85 60-158 23-108 (284)
116 COG1454 EutG Alcohol dehydroge 39.7 1.3E+02 0.0028 28.2 7.4 67 71-151 31-97 (377)
117 cd06267 PBP1_LacI_sugar_bindin 39.4 2.1E+02 0.0046 23.4 11.7 84 50-145 99-184 (264)
118 COG0482 TrmU Predicted tRNA(5- 39.3 85 0.0018 29.2 6.0 50 60-112 20-73 (356)
119 cd05777 DNA_polB_delta_exo DED 39.2 48 0.001 28.4 4.2 28 122-149 70-97 (230)
120 COG2230 Cfa Cyclopropane fatty 39.2 91 0.002 28.0 6.1 65 36-115 70-136 (283)
121 PF08915 tRNA-Thr_ED: Archaea- 38.9 94 0.002 24.9 5.5 63 83-149 55-117 (138)
122 PRK14170 bifunctional 5,10-met 38.8 2.7E+02 0.006 25.0 9.1 86 60-159 22-108 (284)
123 PF02879 PGM_PMM_II: Phosphogl 38.5 99 0.0021 22.6 5.4 56 91-149 37-94 (104)
124 cd01536 PBP1_ABC_sugar_binding 38.3 2.3E+02 0.0049 23.3 9.8 84 49-146 101-189 (267)
125 KOG1342 Histone deacetylase co 38.3 59 0.0013 30.6 4.8 25 125-151 239-263 (425)
126 cd06317 PBP1_ABC_sugar_binding 38.1 2.4E+02 0.0051 23.6 10.2 69 67-145 124-194 (275)
127 cd06292 PBP1_LacI_like_10 Liga 38.1 2.4E+02 0.0052 23.6 9.0 73 62-145 116-188 (273)
128 COG1015 DeoB Phosphopentomutas 38.1 1.4E+02 0.0031 28.0 7.2 98 60-158 230-347 (397)
129 COG1817 Uncharacterized protei 38.1 1.9E+02 0.004 26.7 7.8 85 41-144 2-90 (346)
130 PRK14189 bifunctional 5,10-met 37.7 3.1E+02 0.0066 24.7 9.5 85 60-158 23-108 (285)
131 cd03784 GT1_Gtf_like This fami 37.6 1.4E+02 0.003 27.1 7.3 20 55-74 16-35 (401)
132 PRK14166 bifunctional 5,10-met 37.5 3.1E+02 0.0067 24.6 9.3 85 60-158 21-106 (282)
133 PF06745 KaiC: KaiC; InterPro 37.2 1.5E+02 0.0032 24.8 7.0 95 40-144 19-121 (226)
134 cd06281 PBP1_LacI_like_5 Ligan 36.9 2.3E+02 0.0049 23.8 8.2 74 61-145 109-183 (269)
135 PRK14167 bifunctional 5,10-met 36.6 3.2E+02 0.0069 24.7 9.2 85 60-158 22-107 (297)
136 cd01575 PBP1_GntR Ligand-bindi 36.3 2.5E+02 0.0054 23.3 10.0 74 62-145 110-184 (268)
137 PRK05647 purN phosphoribosylgl 36.2 2.6E+02 0.0057 23.5 8.7 45 91-145 43-87 (200)
138 PLN02897 tetrahydrofolate dehy 36.1 3.1E+02 0.0067 25.4 9.2 84 62-159 78-163 (345)
139 PRK14172 bifunctional 5,10-met 36.1 3.2E+02 0.007 24.5 9.4 85 60-158 22-108 (278)
140 COG0113 HemB Delta-aminolevuli 35.7 2.7E+02 0.0058 25.5 8.4 75 70-146 34-122 (330)
141 cd06307 PBP1_uncharacterized_s 35.7 2.7E+02 0.0058 23.4 9.8 66 71-145 127-193 (275)
142 cd05160 DEDDy_DNA_polB_exo DED 35.0 62 0.0013 26.6 4.2 26 122-147 62-87 (199)
143 PRK03673 hypothetical protein; 34.8 2.5E+02 0.0054 26.5 8.6 78 73-167 5-86 (396)
144 CHL00073 chlN photochlorophyll 34.8 4.2E+02 0.0092 25.5 10.5 87 36-145 311-398 (457)
145 cd01541 PBP1_AraR Ligand-bindi 34.7 2.7E+02 0.0059 23.3 8.4 101 62-181 115-219 (273)
146 TIGR00355 purH phosphoribosyla 34.5 65 0.0014 31.4 4.7 62 52-113 26-102 (511)
147 TIGR01481 ccpA catabolite cont 34.4 3.1E+02 0.0068 23.8 9.6 72 62-145 170-243 (329)
148 PRK15179 Vi polysaccharide bio 34.2 5.2E+02 0.011 26.3 11.6 22 125-146 387-408 (694)
149 PRK14185 bifunctional 5,10-met 34.1 3.5E+02 0.0075 24.5 9.0 85 60-158 21-107 (293)
150 cd03819 GT1_WavL_like This fam 33.8 2.5E+02 0.0054 24.4 8.1 22 125-146 65-86 (355)
151 PRK04148 hypothetical protein; 33.7 2.4E+02 0.0053 22.4 8.9 90 39-152 17-114 (134)
152 PRK11865 pyruvate ferredoxin o 33.4 3.7E+02 0.008 24.3 12.9 126 40-181 92-242 (299)
153 PF00850 Hist_deacetyl: Histon 33.2 43 0.00094 30.2 3.2 29 126-156 228-256 (311)
154 COG2870 RfaE ADP-heptose synth 33.1 2E+02 0.0043 27.5 7.4 31 131-165 410-440 (467)
155 PRK14759 potassium-transportin 33.1 93 0.002 18.1 3.4 22 1-22 1-24 (29)
156 PRK15088 PTS system mannose-sp 33.1 2.4E+02 0.0052 25.7 8.0 54 89-149 15-70 (322)
157 PLN02727 NAD kinase 32.7 5.8E+02 0.012 27.1 11.2 91 42-150 262-352 (986)
158 PRK06769 hypothetical protein; 32.7 2.6E+02 0.0057 22.5 8.2 44 55-100 32-75 (173)
159 PRK14174 bifunctional 5,10-met 32.6 3.8E+02 0.0082 24.2 9.2 86 60-159 21-108 (295)
160 PRK00654 glgA glycogen synthas 32.6 96 0.0021 29.3 5.5 35 41-75 2-42 (466)
161 COG0027 PurT Formate-dependent 32.2 1.8E+02 0.0039 26.9 6.8 64 70-144 13-81 (394)
162 PRK14191 bifunctional 5,10-met 32.0 3.8E+02 0.0082 24.1 9.3 85 60-158 21-107 (285)
163 TIGR02697 WPE_wolbac Wolbachia 32.0 48 0.001 20.2 2.1 32 45-76 4-36 (36)
164 cd05784 DNA_polB_II_exo DEDDy 31.9 71 0.0015 26.8 4.1 28 122-149 50-77 (193)
165 cd05781 DNA_polB_B3_exo DEDDy 31.8 75 0.0016 26.4 4.2 25 122-146 47-71 (188)
166 cd06324 PBP1_ABC_sugar_binding 31.8 3.4E+02 0.0074 23.5 10.1 66 70-145 143-209 (305)
167 PF02677 DUF208: Uncharacteriz 31.6 3.1E+02 0.0067 22.9 10.5 104 58-169 13-133 (176)
168 cd05776 DNA_polB_alpha_exo ina 31.5 69 0.0015 27.5 4.0 29 122-150 81-109 (234)
169 TIGR00758 UDG_fam4 uracil-DNA 31.5 2.4E+02 0.0052 22.9 7.1 55 91-145 50-107 (173)
170 PF05393 Hum_adeno_E3A: Human 31.5 80 0.0017 23.4 3.6 42 3-51 36-78 (94)
171 PLN02616 tetrahydrofolate dehy 31.4 4.4E+02 0.0095 24.6 9.4 78 67-158 101-179 (364)
172 cd04824 eu_ALAD_PBGS_cysteine_ 31.3 4.2E+02 0.009 24.3 9.2 87 58-146 7-113 (320)
173 PF00994 MoCF_biosynth: Probab 31.2 1.5E+02 0.0032 23.2 5.6 62 89-167 20-82 (144)
174 PRK14184 bifunctional 5,10-met 31.2 3.9E+02 0.0085 24.0 9.4 85 60-158 21-107 (286)
175 PRK15454 ethanol dehydrogenase 31.1 4.1E+02 0.009 24.7 9.4 68 65-145 46-113 (395)
176 PRK14194 bifunctional 5,10-met 31.0 4.1E+02 0.0088 24.1 9.2 85 60-158 24-109 (301)
177 PLN02605 monogalactosyldiacylg 31.0 53 0.0011 30.0 3.4 21 127-147 89-109 (382)
178 cd02010 TPP_ALS Thiamine pyrop 30.9 2.9E+02 0.0063 22.4 9.7 96 39-145 66-168 (177)
179 smart00852 MoCF_biosynth Proba 30.6 1.8E+02 0.004 22.3 6.0 60 91-167 23-83 (135)
180 PRK03670 competence damage-ind 30.6 3.4E+02 0.0075 23.8 8.3 63 89-167 23-86 (252)
181 TIGR03568 NeuC_NnaA UDP-N-acet 30.5 2.7E+02 0.0059 25.5 8.0 92 42-145 4-100 (365)
182 PRK14498 putative molybdopteri 30.3 3.4E+02 0.0073 26.9 9.2 92 57-165 167-276 (633)
183 PRK00039 ruvC Holliday junctio 30.3 1.5E+02 0.0033 24.2 5.6 23 124-146 47-69 (164)
184 COG0303 MoeA Molybdopterin bio 30.2 2.9E+02 0.0062 26.1 8.2 92 58-165 158-266 (404)
185 TIGR02472 sucr_P_syn_N sucrose 30.1 1.6E+02 0.0035 27.4 6.6 22 125-146 99-122 (439)
186 cd03825 GT1_wcfI_like This fam 29.8 1.7E+02 0.0037 25.4 6.4 34 40-78 1-41 (365)
187 PRK14182 bifunctional 5,10-met 29.8 4.1E+02 0.009 23.8 9.0 85 60-158 21-106 (282)
188 cd05780 DNA_polB_Kod1_like_exo 29.7 83 0.0018 26.1 4.1 25 122-146 55-79 (195)
189 PF05582 Peptidase_U57: YabG p 29.5 62 0.0013 29.1 3.4 24 122-145 138-161 (287)
190 COG1058 CinA Predicted nucleot 29.3 3.9E+02 0.0085 23.6 8.4 62 89-167 24-86 (255)
191 PRK14193 bifunctional 5,10-met 29.3 4.2E+02 0.0092 23.8 9.3 84 61-158 24-108 (284)
192 PLN02699 Bifunctional molybdop 29.2 2.6E+02 0.0057 28.2 8.1 41 123-166 509-549 (659)
193 cd06271 PBP1_AglR_RafR_like Li 29.0 3.3E+02 0.0072 22.5 9.7 73 63-145 115-188 (268)
194 PLN00142 sucrose synthase 28.8 52 0.0011 34.0 3.2 62 18-79 257-342 (815)
195 TIGR00639 PurN phosphoribosylg 28.4 3.5E+02 0.0076 22.5 8.8 46 90-145 41-86 (190)
196 cd06309 PBP1_YtfQ_like Peripla 28.3 3.6E+02 0.0077 22.6 9.9 79 56-145 109-192 (273)
197 KOG2872 Uroporphyrinogen decar 28.1 4.7E+02 0.01 23.9 9.4 87 55-159 260-348 (359)
198 PF15609 PRTase_2: Phosphoribo 28.0 1.9E+02 0.0042 24.5 5.9 54 39-101 121-180 (191)
199 COG1609 PurR Transcriptional r 28.0 4.5E+02 0.0097 23.6 10.2 76 59-145 166-244 (333)
200 cd03822 GT1_ecORF704_like This 28.0 2.4E+02 0.0051 24.3 6.9 39 41-79 1-42 (366)
201 cd03376 TPP_PFOR_porB_like Thi 27.5 4E+02 0.0086 22.9 9.8 125 39-181 80-231 (235)
202 cd04823 ALAD_PBGS_aspartate_ri 27.4 4.9E+02 0.011 23.9 9.0 75 70-146 27-115 (320)
203 PF15050 SCIMP: SCIMP protein 27.4 67 0.0015 25.2 2.8 22 6-27 17-39 (133)
204 PRK14168 bifunctional 5,10-met 27.3 4.7E+02 0.01 23.7 8.9 84 61-158 24-109 (297)
205 COG1619 LdcA Uncharacterized p 27.3 3.3E+02 0.0071 24.9 7.7 38 59-96 31-71 (313)
206 PF02729 OTCace_N: Aspartate/o 27.2 2.7E+02 0.0059 22.0 6.5 64 85-165 50-114 (142)
207 COG0052 RpsB Ribosomal protein 27.1 4.4E+02 0.0096 23.3 9.3 21 139-164 157-177 (252)
208 PF12273 RCR: Chitin synthesis 27.1 52 0.0011 25.6 2.3 9 36-44 33-41 (130)
209 PF08660 Alg14: Oligosaccharid 27.0 2.1E+02 0.0046 23.4 6.0 16 132-147 86-101 (170)
210 cd01421 IMPCH Inosine monophos 26.9 1.1E+02 0.0024 25.8 4.3 62 52-113 26-102 (187)
211 PRK08195 4-hyroxy-2-oxovalerat 26.8 4.9E+02 0.011 23.7 13.8 94 39-145 101-194 (337)
212 PF13561 adh_short_C2: Enoyl-( 26.8 3.4E+02 0.0074 22.6 7.5 70 56-145 8-80 (241)
213 cd06291 PBP1_Qymf_like Ligand 26.7 3.7E+02 0.0081 22.3 8.7 72 63-145 107-180 (265)
214 PF15179 Myc_target_1: Myc tar 26.6 72 0.0016 26.9 3.1 26 6-31 29-55 (197)
215 PRK14188 bifunctional 5,10-met 26.6 4.8E+02 0.01 23.5 9.3 84 61-158 23-108 (296)
216 TIGR00200 cinA_nterm competenc 26.4 3.6E+02 0.0079 25.5 8.2 64 85-165 19-83 (413)
217 PRK14180 bifunctional 5,10-met 26.0 4.8E+02 0.011 23.4 9.2 85 60-158 21-107 (282)
218 PF00875 DNA_photolyase: DNA p 26.0 3.3E+02 0.0072 21.5 11.2 91 58-169 15-115 (165)
219 PRK14690 molybdopterin biosynt 25.7 4.8E+02 0.01 24.7 8.9 92 58-165 175-283 (419)
220 COG2845 Uncharacterized protei 25.7 5.4E+02 0.012 23.8 10.7 53 127-179 215-269 (354)
221 TIGR02855 spore_yabG sporulati 25.7 62 0.0014 29.0 2.7 24 122-145 137-160 (283)
222 cd06297 PBP1_LacI_like_12 Liga 25.5 4.1E+02 0.0088 22.3 8.5 80 83-181 133-216 (269)
223 cd07945 DRE_TIM_CMS Leptospira 25.5 4.8E+02 0.01 23.1 11.0 95 60-169 121-215 (280)
224 cd06288 PBP1_sucrose_transcrip 25.5 3.9E+02 0.0084 22.1 12.2 73 63-145 111-184 (269)
225 cd06273 PBP1_GntR_like_1 This 25.3 4E+02 0.0086 22.1 9.2 73 63-145 111-185 (268)
226 cd06322 PBP1_ABC_sugar_binding 25.2 4E+02 0.0086 22.1 10.3 65 67-145 120-186 (267)
227 PF02353 CMAS: Mycolic acid cy 25.1 2.1E+02 0.0045 25.3 6.0 95 36-168 60-157 (273)
228 PF07355 GRDB: Glycine/sarcosi 24.9 3.3E+02 0.0071 25.3 7.3 49 122-172 64-112 (349)
229 PRK00005 fmt methionyl-tRNA fo 24.8 3.9E+02 0.0085 23.9 7.8 83 41-145 2-85 (309)
230 PF03104 DNA_pol_B_exo1: DNA p 24.8 80 0.0017 27.8 3.4 25 122-146 221-245 (325)
231 PRK14665 mnmA tRNA-specific 2- 24.5 5.7E+02 0.012 23.7 9.2 80 62-145 24-120 (360)
232 cd05785 DNA_polB_like2_exo Unc 24.4 1.1E+02 0.0023 26.0 3.8 25 122-146 57-81 (207)
233 PRK14176 bifunctional 5,10-met 24.4 5.3E+02 0.011 23.2 9.6 84 61-158 29-114 (287)
234 cd06270 PBP1_GalS_like Ligand 24.2 4.2E+02 0.0091 22.0 12.4 100 62-181 110-213 (268)
235 cd06326 PBP1_STKc_like Type I 24.1 4.8E+02 0.01 22.6 8.6 74 57-145 125-198 (336)
236 PRK14179 bifunctional 5,10-met 24.0 5.3E+02 0.011 23.1 9.4 85 60-158 22-108 (284)
237 PRK14171 bifunctional 5,10-met 23.8 5.4E+02 0.012 23.2 9.3 84 61-158 23-108 (288)
238 cd06319 PBP1_ABC_sugar_binding 23.7 4.3E+02 0.0093 22.0 10.2 54 82-145 138-192 (277)
239 PRK10680 molybdopterin biosynt 23.6 6.2E+02 0.014 23.8 9.3 92 57-165 158-267 (411)
240 PLN02516 methylenetetrahydrofo 23.5 5.6E+02 0.012 23.2 9.5 78 67-158 37-115 (299)
241 cd07995 TPK Thiamine pyrophosp 23.3 4.4E+02 0.0095 22.0 9.3 96 49-166 21-116 (208)
242 PRK11866 2-oxoacid ferredoxin 23.2 5.4E+02 0.012 22.9 8.8 98 37-147 75-192 (279)
243 cd00006 PTS_IIA_man PTS_IIA, P 23.0 3.4E+02 0.0073 20.5 8.3 67 72-152 3-71 (122)
244 cd01391 Periplasmic_Binding_Pr 22.8 4E+02 0.0086 21.3 9.1 85 46-145 103-189 (269)
245 cd06293 PBP1_LacI_like_11 Liga 22.8 4.5E+02 0.0097 21.9 9.9 100 62-181 110-213 (269)
246 PRK00871 glutathione-regulated 22.8 1.3E+02 0.0027 25.0 3.9 24 42-65 2-25 (176)
247 PF00764 Arginosuc_synth: Argi 22.7 6.5E+02 0.014 23.7 9.0 79 59-143 13-110 (388)
248 PRK09492 treR trehalose repres 22.6 5E+02 0.011 22.3 12.5 95 59-177 166-261 (315)
249 PF00532 Peripla_BP_1: Peripla 22.3 4.2E+02 0.0092 23.0 7.5 93 59-171 109-203 (279)
250 TIGR02765 crypto_DASH cryptoch 22.2 6.5E+02 0.014 23.5 12.0 90 59-169 18-123 (429)
251 cd01635 Glycosyltransferase_GT 22.0 3.3E+02 0.0071 21.4 6.3 9 66-74 29-37 (229)
252 PF07578 LAB_N: Lipid A Biosyn 21.9 1E+02 0.0022 21.9 2.7 21 2-22 32-52 (72)
253 PF02075 RuvC: Crossover junct 21.9 2E+02 0.0043 23.0 4.8 24 124-147 44-67 (149)
254 PTZ00397 macrophage migration 21.5 2.1E+02 0.0046 21.5 4.7 63 37-107 33-98 (116)
255 cd03817 GT1_UGDG_like This fam 21.5 4.3E+02 0.0093 22.5 7.3 22 59-80 23-44 (374)
256 PLN02331 phosphoribosylglycina 21.5 5.1E+02 0.011 22.0 7.6 44 92-145 42-85 (207)
257 PRK14183 bifunctional 5,10-met 21.3 6E+02 0.013 22.8 9.1 79 66-158 28-107 (281)
258 cd06284 PBP1_LacI_like_6 Ligan 21.3 4.7E+02 0.01 21.5 9.7 71 65-145 112-183 (267)
259 PRK14938 Ser-tRNA(Thr) hydrola 21.3 3.9E+02 0.0085 25.2 7.1 59 84-145 52-110 (387)
260 cd03798 GT1_wlbH_like This fam 21.2 3.7E+02 0.008 22.7 6.8 22 124-145 77-100 (377)
261 cd06306 PBP1_TorT-like TorT-li 21.1 5E+02 0.011 21.8 9.3 64 70-144 126-190 (268)
262 COG3598 RepA RecA-family ATPas 21.0 1.5E+02 0.0032 27.6 4.2 51 92-144 147-200 (402)
263 TIGR03590 PseG pseudaminic aci 21.0 5.6E+02 0.012 22.3 8.6 18 128-145 70-87 (279)
264 PRK03501 ppnK inorganic polyph 20.9 5.8E+02 0.013 22.5 8.1 84 42-135 4-96 (264)
265 cd05778 DNA_polB_zeta_exo inac 20.9 1.4E+02 0.0031 25.6 4.0 28 122-149 80-107 (231)
266 CHL00196 psbY photosystem II p 20.5 1.7E+02 0.0036 18.0 3.0 22 1-22 1-24 (36)
267 cd03522 MoeA_like MoeA_like. T 20.5 5.6E+02 0.012 23.2 7.9 80 71-166 161-244 (312)
268 TIGR01251 ribP_PPkin ribose-ph 20.3 6.3E+02 0.014 22.6 8.5 24 126-149 106-129 (308)
269 cd06418 GH25_BacA-like BacA is 20.2 5.4E+02 0.012 21.8 8.1 55 58-112 56-115 (212)
270 TIGR02176 pyruv_ox_red pyruvat 20.2 8.4E+02 0.018 26.5 10.2 119 39-169 951-1090(1165)
271 TIGR00032 argG argininosuccina 20.1 7.3E+02 0.016 23.3 10.5 78 61-144 17-112 (394)
272 PF02525 Flavodoxin_2: Flavodo 20.1 1.2E+02 0.0025 25.0 3.2 38 40-78 1-44 (199)
No 1
>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=1.6e-46 Score=314.80 Aligned_cols=199 Identities=51% Similarity=0.801 Sum_probs=181.1
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
.....|+|++.||||||++|+||||..+.+.|++|+++|+++|+++|+|++|++|+.+||..||+|.+++..++.|+++|
T Consensus 34 l~~~sriLLviAhpdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~D 113 (247)
T KOG3332|consen 34 LLAESRILLVIAHPDDESMFFSPTILYLTSGACNVHILCLSNGNADGLGKIREKELHRACAVLGIPLSNVVVLDTPFFQD 113 (247)
T ss_pred ccccceEEEEEeccCccccchhhHHHHHhcCCccEEEEEecCCCccccchHHHHHHHHHHHHHCCchhheEEecCCcCCC
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhc-CCCceEEeeehhhhhhhccCCchh
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGT-SERNIEAWELMTTNILRKYSGPLD 194 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~-~~~~~~~ye~~s~~~~~~y~~~~d 194 (243)
||++.|+++.+.+.+.+.++..+.++|+|||..|.+||++|++++.++..++... .++.+.++.+.|.|.++||.+.+|
T Consensus 114 g~~~~Wd~~~v~~~l~~~ie~~~~~~iiTFD~~GVSgH~NH~~~y~av~~l~~~~k~pk~v~~~~L~S~Ni~rKY~s~lD 193 (247)
T KOG3332|consen 114 GPGEDWDPDAVASILLQHIEVLNIDTIITFDNYGVSGHCNHIACYAAVDCLIDGLKLPKGVKYLTLKSINIFRKYISILD 193 (247)
T ss_pred CcccccCHHHHHHHHHHHHHccCccEEEEecCCCcCCCCccHhhhhhHHHHhhhccCCCceEEEEEeehHHHHHhhhHHH
Confidence 9999999999999999999999999999999999999999999999998876543 467899999999999999999999
Q ss_pred HHHHHHhhhcccCCceeEEEeCCHHHHHHHHHhchhhHhhhhhceec
Q 026131 195 IWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWCDFLYSF 241 (243)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~v~~~~~~k~~Am~~H~SQ~~wfr~l~~~ 241 (243)
++.+...+ ...++.-...+..+||.||+||++||||+|+.
T Consensus 194 i~~sliss-------~~~~i~kq~~~~~~aM~~H~SQmvWFRylyi~ 233 (247)
T KOG3332|consen 194 ILLSLISS-------TVLFINKQMAMAFKAMMCHRSQMVWFRYLYIL 233 (247)
T ss_pred hHHHHhcc-------eeEEEehhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99887742 24444333468899999999999999999974
No 2
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=100.00 E-value=4.9e-36 Score=266.37 Aligned_cols=190 Identities=18% Similarity=0.245 Sum_probs=140.5
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC--------------CchHHHHHHHHHHHHHcCCCCCcEE
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD--------------GMGNIRKDELHRACAVLKIPLEQVK 106 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~--------------~~~~~R~~E~~~A~~~LGv~~~~~~ 106 (243)
|+|+|+||||||+++|||||++++++|++|.+||+|+|+.+ ++++.|++|+++||++||+. ..
T Consensus 2 rvL~V~AHPDDE~l~~GGtiA~~a~~G~~V~vV~~T~Ge~g~~~~~~~~~~~~~~~l~~~R~~E~~~Aa~~LGv~---~~ 78 (283)
T TIGR03446 2 RLMAVHAHPDDESSKGAATMARYAAEGHDVMVVTCTGGERGDILNPAMDKPAVEGRIAEVRREEMAEAAEILGVE---HR 78 (283)
T ss_pred eEEEEEeCCCcHHHhHHHHHHHHHHCCCeEEEEEecCCCCCCCCCcccccccchhhHHHHHHHHHHHHHHHcCCC---eE
Confidence 79999999999999999999999999999999999999854 25789999999999999993 46
Q ss_pred EccCCCCC-----------CCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCc-
Q 026131 107 VLDLVDFQ-----------DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERN- 174 (243)
Q Consensus 107 ~l~~pd~~-----------d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~- 174 (243)
+|+|+|.. ++....|+.+++.+.|.++|++++||+|+|||++|+|+|+||+++++++.+|++......
T Consensus 79 ~Lg~~Dsgl~~~~~~~~~~~~~~~~~~~~~~~~~L~~iIr~~~PdvVvT~d~~GgygHpDH~~v~~a~~~A~~~a~~~~~ 158 (283)
T TIGR03446 79 WLGFVDSGLPEGDPLPPLPEGCFALEPLEEAAEPLVRVIREFRPHVITTYDENGGYPHPDHIMCHEVSVEAFEAAGDPER 158 (283)
T ss_pred EeccccCCccccCccccCCccccccCCHHHHHHHHHHHHHHcCCEEEEecCCCCCCCChhHHHHHHHHHHHHHHcCCccc
Confidence 89998852 111123577899999999999999999999999999999999999999999986542111
Q ss_pred ----------eEEeee--hhhhhhhcc------CC---ch-hHHHHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchh
Q 026131 175 ----------IEAWEL--MTTNILRKY------SG---PL-DIWLSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHS 230 (243)
Q Consensus 175 ----------~~~ye~--~s~~~~~~y------~~---~~-d~~~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~S 230 (243)
.++|.. .+...++.. .+ .. +........+..|....++.||++. .+|.+||++|+|
T Consensus 159 ~p~~g~pw~~~~ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~vd~~~~~~~k~~Al~aHat 238 (283)
T TIGR03446 159 YPEAGEPWAPLKLYYTHGFIRERMEALHEELAERGLESPYAEWLARWLEDRADITARVTTQVECADYFEQRDDALRAHAT 238 (283)
T ss_pred cccCCCCCcccEEEEEcccCHHHHHHHHHHHHhcCCCCCccccccccccccCCCCCceEEEEEcHHHHHHHHHHHHhhhh
Confidence 122222 111111100 00 00 0000000001235667888999875 699999999999
Q ss_pred hHh
Q 026131 231 QWV 233 (243)
Q Consensus 231 Q~~ 233 (243)
|+.
T Consensus 239 Q~~ 241 (283)
T TIGR03446 239 QID 241 (283)
T ss_pred hcC
Confidence 995
No 3
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=100.00 E-value=4.1e-35 Score=260.90 Aligned_cols=185 Identities=19% Similarity=0.238 Sum_probs=136.3
Q ss_pred EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC----------------chHHHHHHHHHHHHHcCCCCCcEE
Q 026131 43 LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG----------------MGNIRKDELHRACAVLKIPLEQVK 106 (243)
Q Consensus 43 L~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~----------------~~~~R~~E~~~A~~~LGv~~~~~~ 106 (243)
|+|+||||||++||||||++++++|.+|++||+|+|+.+. +++.|++|+++||++||+ +.+.
T Consensus 1 L~V~AHPDDE~lg~GGtia~~a~~G~~V~vv~lT~Ge~g~~~~~~~~~~~~~~~~~l~~~R~~E~~~Aa~~LGv--~~~~ 78 (284)
T TIGR03445 1 LLVHAHPDDETLTTGATIARYAARGADVTVVTCTLGEEGEVIGERWAQLAADRADQLGGYRIGELTAALRALGV--GDPR 78 (284)
T ss_pred CeeeeCCCchhhhhHHHHHHHHHCCCeEEEEEecCCccCCcCchhhhhcccccHHHHHHHHHHHHHHHHHHcCC--CeEE
Confidence 6899999999999999999999999999999999998642 468899999999999999 5678
Q ss_pred Ecc----CCCCCCCcc---------ccCC--hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 107 VLD----LVDFQDGFD---------KLWN--HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 107 ~l~----~pd~~d~~~---------~~~~--~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
+|+ |+|. ++. ..|. .+++.+.|.++|++++||+|+||+|+|+|+|+||+++++++.+|+....
T Consensus 79 ~L~~~~~~~Ds--gl~~~p~~~~~~~~~~~~~~e~~~~l~~~Ir~~~PdvViT~~p~g~~~HpDH~~~~~a~~~A~~~a~ 156 (284)
T TIGR03445 79 FLGGAGRWRDS--GMAGTPSRSRPRAFVDADVDEAAGALVAVIREVRPHVVVTYDPNGGYGHPDHIQAHRVTTRAVEAAA 156 (284)
T ss_pred EcCCcCcccCC--CCCCCCcccCccccccCCHHHHHHHHHHHHHHhCCcEEEecCCCCCCCCchhHHHHHHHHHHHHHhc
Confidence 998 5553 121 1232 3578999999999999999999999999999999999999999976543
Q ss_pred ----------CCceEEeeehhhhhhhc----cC-CchhHH--HHH-HhhhcccCCceeEEEeCCH--HHHHHHHHhchhh
Q 026131 172 ----------ERNIEAWELMTTNILRK----YS-GPLDIW--LSI-LSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQ 231 (243)
Q Consensus 172 ----------~~~~~~ye~~s~~~~~~----y~-~~~d~~--~~~-~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ 231 (243)
++.++.+..+ ...++. .. +....+ +.. ......+...+++.||++. ++|++||++|+||
T Consensus 157 ~~~~~~~pw~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vdv~~~~~~K~~Al~aH~SQ 235 (284)
T TIGR03445 157 EAPLPGTPWQVPKFYWTVTP-RSALEEAFARLRGDLPGEWRLPAAEDVPFGVPDDRITTVVDGTAYLAAKRAALRAHATQ 235 (284)
T ss_pred CCCCCCCCCcccEEEeeecc-HHHHHHHHHHHhccCCcccccccccccccCCCCCcceEEEEChhhHHHHHHHHHhhhcc
Confidence 1233333222 111110 00 000000 000 0001124567899999984 7999999999999
Q ss_pred H
Q 026131 232 W 232 (243)
Q Consensus 232 ~ 232 (243)
+
T Consensus 236 ~ 236 (284)
T TIGR03445 236 V 236 (284)
T ss_pred c
Confidence 8
No 4
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=100.00 E-value=6.1e-35 Score=253.94 Aligned_cols=182 Identities=20% Similarity=0.240 Sum_probs=144.0
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCc------hHHHHHHHHHHHHHcCCCCCcEEEcc
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGM------GNIRKDELHRACAVLKIPLEQVKVLD 109 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~------~~~R~~E~~~A~~~LGv~~~~~~~l~ 109 (243)
.....++|+|.||||||++||||||++++++|++|.++|+|+|+.++. +++|++|+++|+++||+ ..+++|+
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv--~~~~~l~ 84 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGV--RETIFLG 84 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEccCCcccccCCccchHHHHHHHHHHHHHhcCC--CcceecC
Confidence 456789999999999999999999999999999999999999998753 55699999999999999 5699999
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEEeeehh-hhhhhc
Q 026131 110 LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMT-TNILRK 188 (243)
Q Consensus 110 ~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~ye~~s-~~~~~~ 188 (243)
++|. ...++.+++.+.|.+++++.+|++|+|+++.+.++||||+.+++++.+|++...... |+..- ......
T Consensus 85 ~~~~----~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d~~~HpDH~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~ 157 (237)
T COG2120 85 FPDT----GADADPEEITGALVAIIRRLRPDVVFTPYPDDGYGHPDHRATHEAAKAAVRTAGIPL---YRPRLWGGALGR 157 (237)
T ss_pred CCcc----ccccChHHHHHHHHHHHHHhCCCEEEecCCCCCCCCCChHHHHHHHHHHHHhccccc---cCcccccccccC
Confidence 9953 245788999999999999999999999987766799999999999999987643322 22110 000011
Q ss_pred cCCchhHHHHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchhhHhh
Q 026131 189 YSGPLDIWLSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQWVW 234 (243)
Q Consensus 189 y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ~~w 234 (243)
+. .... .......+++++|++. +.|.+||++|+||+.+
T Consensus 158 ~~-----~~~~---~~~~~~~~~v~~di~~~~~~k~~Ai~ah~sQ~~~ 197 (237)
T COG2120 158 PR-----EPLY---YERAAGSPDVFVDITDEVEAKLAAIRAHKSQFGL 197 (237)
T ss_pred Cc-----cccc---ccccCCCCCeEEechHHHHHHHHHHHHHHHHhcc
Confidence 10 0000 0113456899999985 5899999999999985
No 5
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=100.00 E-value=1.6e-32 Score=267.52 Aligned_cols=179 Identities=22% Similarity=0.276 Sum_probs=142.9
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC---C------------------------------
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD---G------------------------------ 82 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~---~------------------------------ 82 (243)
....+|+|+|+||||||+|||||||++++++|++|+++++|+|+.+ +
T Consensus 366 ~~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~TsG~~av~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (652)
T PRK02122 366 LPYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQTSGNIAVFDEEVLRFADFINDFNQIFGISSDELKKKYEEI 445 (652)
T ss_pred ccCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEecCCcccCCccchhhhhhhhhhhhhhccccccccchhhhhh
Confidence 3456899999999999999999999999999999999999999852 0
Q ss_pred --------------------chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccC-ChHHHHHHHHHHHHhcCCCE
Q 026131 83 --------------------MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLW-NHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 83 --------------------~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~-~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+|++|+++||++||++.++++||++||.++|..... ..++.++.+.++|++++|++
T Consensus 446 ~~~~~~k~~~~~d~~~~~~~k~~iR~~Ea~~A~~~lGv~~~~v~fL~lP~y~~g~~~~~p~~~~~v~~i~~li~~~kP~~ 525 (652)
T PRK02122 446 IEFLKNKKPGEIDSPEVRKLKGLIRRGEARAACRYVGLPDEHVHFLDLPFYETGTVRKNPIGEADVEIVMDLLEEIKPHQ 525 (652)
T ss_pred hhhhhcccccccChHHHHhHHHHHHHHHHHHHHHhcCCCccceEECCCCCccCCccccCcccHHHHHHHHHHHHHcCCCE
Confidence 257999999999999999877999999999877643321 23577899999999999999
Q ss_pred EEeeCCCCCCCCchHHHHHHHHHHHHhhcCCC----c--eEEeeehhhhhhhccCCchhHHHHHHhhhcccCCceeEEEe
Q 026131 142 IITFDNYGVSGHCNHRDVHHGIWSYLNGTSER----N--IEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLN 215 (243)
Q Consensus 142 V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~----~--~~~ye~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~ 215 (243)
|+++. +..|.|+||++|++|+.+|++..... . +++|... | ..+ ....++++|+
T Consensus 526 V~~~~-~~~D~H~DHr~~~~av~~A~~~~~~~~~~~~~~vw~y~~a---w-~e~----------------~~~~~~~~Vd 584 (652)
T PRK02122 526 IFVAG-DLADPHGTHRVCLDAIFAALDRLKEEEWMKDCRVWLYRGA---W-QEW----------------EIHEIEMAVP 584 (652)
T ss_pred EEECC-CCCCCCchHHHHHHHHHHHHHhcccCcccccceeEEeccc---c-ccc----------------cCCCCCEEEE
Confidence 99983 45789999999999999998653211 1 2223211 0 000 1235789999
Q ss_pred CCH---HHHHHHHHhchhhHhhh
Q 026131 216 EHP---KKSFLAMSQHHSQWVWC 235 (243)
Q Consensus 216 ~~~---~~k~~Am~~H~SQ~~wf 235 (243)
+++ ++|++||.+|+||+.+.
T Consensus 585 iS~~~~~~K~~Ai~~H~SQ~~~~ 607 (652)
T PRK02122 585 LSPEELLRKRNAIFKHQSQKDSA 607 (652)
T ss_pred CCHHHHHHHHHHHHHhHhhcCCC
Confidence 996 49999999999999864
No 6
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=99.97 E-value=1.1e-31 Score=211.85 Aligned_cols=119 Identities=31% Similarity=0.474 Sum_probs=102.3
Q ss_pred EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC---------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 43 LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD---------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 43 L~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~---------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
|+|+||||||+|||||+|+++.++|.+|+++++|+|+.+ +.++.|++|.++|++.||+ +++.+++|||.
T Consensus 1 Lvi~aHpDDe~l~~gg~i~~~~~~g~~v~vv~~t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv--~~~~~l~~~D~ 78 (128)
T PF02585_consen 1 LVIAAHPDDEELGCGGTIAKLAEAGHRVVVVTLTDGEAGHPDPTPWARELGEIRRAEARAAAEILGV--ENVIFLDFPDG 78 (128)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHTT-EEEEEECE--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT---EEEEEEEECTT
T ss_pred CEEEECCCchHHhhHHHHHHHHhcCCeEEEEEecccccCCcccchhhHhHHHHHHHHHHHHHHHcCC--ceEEEeecCCC
Confidence 799999999999999999999999999999999999987 6788999999999999999 89999999986
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHH
Q 026131 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 114 ~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~ 167 (243)
+. ..|+.+++.+.|+++|++++||+|+||++.+. +|+||+++++++++|+
T Consensus 79 ~~---~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~-gH~DH~~~~~av~~A~ 128 (128)
T PF02585_consen 79 QL---PGWSWEELVRDLEDLIREFRPDVVFTPDPDDG-GHPDHRAVARAVREAL 128 (128)
T ss_dssp SC---TCHHHHHHHHHHHHHHHHH-ESEEEEE-STTS--SHHHHHHHHHHHHHH
T ss_pred Cc---ccccHHHHHHHHHHHHHHcCCCEEEECCCCCC-CcHHHHHHHHHHHHHC
Confidence 52 22567899999999999999999999976554 5999999999999885
No 7
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=94.45 E-value=0.18 Score=40.85 Aligned_cols=91 Identities=14% Similarity=0.168 Sum_probs=58.7
Q ss_pred cEEEEecCc-------hhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 41 NVLLVIAHP-------DDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 41 ~vL~v~aHP-------DDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
+||++.-|. |-|.+.++-.|+. +.|.+|.++++-+.+ .-.+++++++...|+ ++++.++.+..
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~--~~g~~v~av~~G~~~------~~~~~l~~~l~~~G~--d~v~~~~~~~~ 70 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAE--ALGGEVTAVVLGPAE------EAAEALRKALAKYGA--DKVYHIDDPAL 70 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHH--CTTSEEEEEEEETCC------CHHHHHHHHHHSTTE--SEEEEEE-GGG
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHh--hcCCeEEEEEEecch------hhHHHHhhhhhhcCC--cEEEEecCccc
Confidence 367777774 3344444443332 237788888877322 123455667778999 78999887764
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 114 ~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
. .++.+...+.|.+++++.+|++|++.+
T Consensus 71 ~-----~~~~~~~a~~l~~~~~~~~~~lVl~~~ 98 (164)
T PF01012_consen 71 A-----EYDPEAYADALAELIKEEGPDLVLFGS 98 (164)
T ss_dssp T-----TC-HHHHHHHHHHHHHHHT-SEEEEES
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 2 235678899999999999999999873
No 8
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=93.61 E-value=0.92 Score=37.03 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=55.1
Q ss_pred cEEEEecCchhhhcchHHHHHHHHh-CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTS-RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~-~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
++++++=|.+++.-...--+...++ -|.+|.++++-.+. .+..+.+..+|+ ++++.++.+.+.
T Consensus 1 ~ilV~~E~~~g~l~~~s~el~~~A~~l~~~v~~v~~G~~~---------~~~~~~~~~~Ga--d~v~~~~~~~~~----- 64 (168)
T cd01715 1 SVLVLAEHRNGELRELTLEAVTAARKLGGEVTALVIGSGA---------EAVAAALKAYGA--DKVLVAEDPALA----- 64 (168)
T ss_pred CEEEEEEecCCChHHHHHHHHHHHHHhCCCEEEEEECCCh---------HHHHHHHHhcCC--CEEEEecChhhc-----
Confidence 4688888877664433333333333 24566655544321 111222345799 688887755321
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+.+...+.|.+++++.+|++|++.+
T Consensus 65 ~~~~~~~a~al~~~i~~~~p~~Vl~~~ 91 (168)
T cd01715 65 HYLAEPYAPALVALAKKEKPSHILAGA 91 (168)
T ss_pred ccChHHHHHHHHHHHHhcCCCEEEECC
Confidence 135578899999999999999999873
No 9
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=92.27 E-value=0.38 Score=42.71 Aligned_cols=88 Identities=13% Similarity=0.022 Sum_probs=53.0
Q ss_pred chHHHHHHHHh-CCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 026131 55 FFSPTINYLTS-RRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (243)
Q Consensus 55 ~~Ggti~~~~~-~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~ 132 (243)
..|=+|...++ -|.+..+-+-..-. ....-..|+++++++|+-||+ +..+..-||-.++.+..--.+-+.+.+.+
T Consensus 117 ~~G~~i~~~Ak~mGAktFVh~sfprhms~~~l~~Rr~~M~~~C~~lGi---~fv~~taPDP~sd~gv~gaqqfIlE~vp~ 193 (275)
T PF12683_consen 117 SRGYTIVWAAKKMGAKTFVHYSFPRHMSYELLARRRDIMEEACKDLGI---KFVEVTAPDPTSDVGVAGAQQFILEDVPK 193 (275)
T ss_dssp HHHHHHHHHHHHTT-S-EEEEEETTGGGSHHHHHHHHHHHHHHHHCT-----EEEEEE---SSTCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHcCCceEEEEechhhcchHHHHHHHHHHHHHHHHcCC---eEEEEeCCCCCCCCCcHHHHHHHHHHHHH
Confidence 46777777775 59888777644332 234568899999999999999 67888888754332211011237788889
Q ss_pred HHHhcCCCEEEee
Q 026131 133 EVVNCSIDLIITF 145 (243)
Q Consensus 133 ~i~~~~Pd~V~t~ 145 (243)
.|.++.+|+.|-.
T Consensus 194 ~i~kYGkdtaff~ 206 (275)
T PF12683_consen 194 WIKKYGKDTAFFC 206 (275)
T ss_dssp HHHHH-S--EEEE
T ss_pred HHHHhCCceeEEe
Confidence 9999999986643
No 10
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=89.71 E-value=4.1 Score=33.43 Aligned_cols=46 Identities=13% Similarity=0.152 Sum_probs=34.3
Q ss_pred HHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 94 ACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 94 A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+...|+ ++++..+.+.+. .++.+...+.|.+++++.+|++|++.+
T Consensus 54 ~~~~~Ga--d~v~~~~~~~~~-----~~~~~~~a~~l~~~i~~~~p~~Vl~g~ 99 (181)
T cd01985 54 EALAMGA--DKVLLVEDPALA-----GYDPEATAKALAALIKKEKPDLILAGA 99 (181)
T ss_pred HHHHhCC--CEEEEEecCccc-----CCChHHHHHHHHHHHHHhCCCEEEECC
Confidence 3446799 678887755432 235677889999999999999999873
No 11
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=85.74 E-value=3.9 Score=36.77 Aligned_cols=92 Identities=11% Similarity=0.033 Sum_probs=51.0
Q ss_pred CcEEEEec-CchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLVIA-HPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v~a-HPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
+++++++. ...+|. .+--+...+.++|++|++++...+. . .+ ..+..|+ +++.++.+.......
T Consensus 2 ~~i~i~~~g~gG~~~-~~~~la~~L~~~g~ev~vv~~~~~~-------~-~~---~~~~~g~---~~~~~~~~~~~~~~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVF-PALALAEELKKRGWEVLYLGTARGM-------E-AR---LVPKAGI---EFHFIPSGGLRRKGS 66 (357)
T ss_pred cEEEEEcCcchHhhh-HHHHHHHHHHhCCCEEEEEECCCch-------h-hh---ccccCCC---cEEEEeccCcCCCCh
Confidence 46777765 555554 3334445566789999887654321 0 11 1111576 466666542211100
Q ss_pred -----ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 119 -----KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 119 -----~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+..-.....+.+++++.+||+|+++.
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~ 99 (357)
T PRK00726 67 LANLKAPFKLLKGVLQARKILKRFKPDVVVGFG 99 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECC
Confidence 0011123455677888999999999984
No 12
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=84.98 E-value=7.9 Score=35.55 Aligned_cols=89 Identities=24% Similarity=0.307 Sum_probs=58.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc-c
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF-D 118 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~-~ 118 (243)
++|++=..||= -+.++-++|.++.++|++|.+.+-- ..+..+-++.+|+ ++..+|-.. .+. .
T Consensus 1 MkIwiDi~~p~-hvhfFk~~I~eL~~~GheV~it~R~-----------~~~~~~LL~~yg~---~y~~iG~~g--~~~~~ 63 (335)
T PF04007_consen 1 MKIWIDITHPA-HVHFFKNIIRELEKRGHEVLITARD-----------KDETEELLDLYGI---DYIVIGKHG--DSLYG 63 (335)
T ss_pred CeEEEECCCch-HHHHHHHHHHHHHhCCCEEEEEEec-----------cchHHHHHHHcCC---CeEEEcCCC--CCHHH
Confidence 46778888888 4567899999999999998665532 2456778889999 455554211 111 1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+...+=...+.+++++++||+++++
T Consensus 64 Kl~~~~~R~~~l~~~~~~~~pDv~is~ 90 (335)
T PF04007_consen 64 KLLESIERQYKLLKLIKKFKPDVAISF 90 (335)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEec
Confidence 111111223446777889999999986
No 13
>PRK11677 hypothetical protein; Provisional
Probab=83.04 E-value=1.2 Score=35.51 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=19.7
Q ss_pred CchHHHHHHHHH--HHHHHHHHHhhcc
Q 026131 1 MSWLLVIVSTIV--VWVASLFKILNSS 25 (243)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~ 25 (243)
|.|++.++|+|+ ++.|++.|.....
T Consensus 1 M~W~~a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 1 MTWEYALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhccch
Confidence 999999999999 5558888854444
No 14
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=81.01 E-value=11 Score=34.55 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=47.9
Q ss_pred EEEEec----CchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 42 VLLVIA----HPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 42 vL~v~a----HPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
|++|+. +.+..+..+-.+...+.++|++|++++...++..+. +.. .-|+ .++.+.......+.
T Consensus 2 I~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~------~~~----~~~i---~v~~~p~~~~~~~~ 68 (398)
T cd03796 2 ICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGI------RYL----TNGL---KVYYLPFVVFYNQS 68 (398)
T ss_pred eeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCc------ccc----cCce---eEEEecceeccCCc
Confidence 445544 333344456666777788999998887544322110 000 1244 33333322111100
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeCCC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNY 148 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~ 148 (243)
...........+.+.+.+.+||+|.+|++.
T Consensus 69 -~~~~~~~~~~~l~~~~~~~~~DiIh~~~~~ 98 (398)
T cd03796 69 -TLPTFFGTFPLLRNILIRERITIVHGHQAF 98 (398)
T ss_pred -cccchhhhHHHHHHHHHhcCCCEEEECCCC
Confidence 011112234567778888999999998643
No 15
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=80.41 E-value=20 Score=32.73 Aligned_cols=88 Identities=11% Similarity=0.092 Sum_probs=56.7
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
+.+++++.|.+.+.=...--+...+++-.+|..+++-. ...+.+...|+ +.+...+-+...
T Consensus 1 ~~vlv~~e~~~~~l~~~s~el~~~A~~l~~v~~vv~g~------------~~~~~~~~~Ga--d~v~~~~~~~~~----- 61 (313)
T COG2025 1 MKVLVVAEHDGGRLSPVSLELLTAARKLGDVAAVVIGE------------GAAAAAKAYGA--DKVLVAEGPELA----- 61 (313)
T ss_pred CeEEEEecCCCCccchhhHHHHHHHHhcCceEEEEech------------HHHHHHhhcCC--CEEEEEcccchh-----
Confidence 36889999975443212211222233222676666543 45667788999 678787766542
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
....+...+.+.+++++.+|++|+.++
T Consensus 62 ~~~~e~~~~~l~~l~~~~~p~~il~~a 88 (313)
T COG2025 62 NYLPEPYADALVDLAKKYKPDVVLLPA 88 (313)
T ss_pred ccchhHHHHHHHHHHHhcCCCEEEEcC
Confidence 124456889999999999999999873
No 16
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=79.76 E-value=18 Score=27.56 Aligned_cols=82 Identities=18% Similarity=0.158 Sum_probs=46.9
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccC
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLW 121 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~ 121 (243)
+|+|+.=++ . ++--.+..+.++|.+|++++..++. . .--...|+ .+..++.+ .. + ..
T Consensus 2 Il~i~~~~~--~-~~~~~~~~L~~~g~~V~ii~~~~~~---------~---~~~~~~~i---~~~~~~~~-~k-~---~~ 58 (139)
T PF13477_consen 2 ILLIGNTPS--T-FIYNLAKELKKRGYDVHIITPRNDY---------E---KYEIIEGI---KVIRLPSP-RK-S---PL 58 (139)
T ss_pred EEEEecCcH--H-HHHHHHHHHHHCCCEEEEEEcCCCc---------h---hhhHhCCe---EEEEecCC-CC-c---cH
Confidence 555554432 2 3556677777889999999984431 0 01113444 33333322 11 1 11
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
+.-.+ ..+.+++++.+||+|.+|.+
T Consensus 59 ~~~~~-~~l~k~ik~~~~DvIh~h~~ 83 (139)
T PF13477_consen 59 NYIKY-FRLRKIIKKEKPDVIHCHTP 83 (139)
T ss_pred HHHHH-HHHHHHhccCCCCEEEEecC
Confidence 22233 37899999999999999843
No 17
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=79.58 E-value=15 Score=30.93 Aligned_cols=85 Identities=13% Similarity=0.157 Sum_probs=50.9
Q ss_pred EEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCCh
Q 026131 44 LVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNH 123 (243)
Q Consensus 44 ~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~ 123 (243)
++..| +.+.+..+-.++ .+.|.+|.++.+.+++ ..+..+.+..+|+ ++++..+.+.+ ..++.
T Consensus 32 vi~e~-~~~~l~ea~~la--~~~g~~v~av~~G~~~--------~~~~~~~l~~~G~--d~V~~~~~~~~-----~~~~~ 93 (202)
T cd01714 32 IINPY-DEYAVEEALRLK--EKYGGEVTVVSMGPPQ--------AEEALREALAMGA--DRAILVSDRAF-----AGADT 93 (202)
T ss_pred cCChH-hHHHHHHHHHhh--hhcCCEEEEEEECCHH--------HHHHHHHHHHcCC--CEEEEEecccc-----cCCCh
Confidence 44454 455544222221 1235567666665421 1122222345798 68888876543 22466
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+...+.|.+++++.+|++|++.+
T Consensus 94 e~~a~al~~~i~~~~p~lVL~~~ 116 (202)
T cd01714 94 LATAKALAAAIKKIGVDLILTGK 116 (202)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcC
Confidence 78899999999999999999874
No 18
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=79.48 E-value=12 Score=33.76 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=49.4
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEeeCC
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITFDN 147 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~d~ 147 (243)
++++...+.+....+..|+....+++..+|. +.+.+..|++.+. ...+....+.+++.+++| |+|+.+.|
T Consensus 3 ~~~~~~~~~~~~~a~~ka~~d~~~~~~~~g~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~Dvv~~~~P 73 (333)
T PRK09814 3 VHITNLYGMSGNSAALKAKNDVTKIAKQLGF--EELGIYFYNIKRD------SLSERSKRLDGILASLKPGDIVIFQFP 73 (333)
T ss_pred EEEEecccccccchHHHHHHHHHHHHHHCCC--eEeEEEecccccc------hHHHHHHHHHHHHhcCCCCCEEEEECC
Confidence 3444444444445678899999999999999 5566666665431 334567778888888999 99998855
No 19
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=79.48 E-value=21 Score=27.45 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=56.1
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCC-chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 58 PTINYLTSRRHNLHILCMSNGNADG-MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~~~-~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
.-+..+.++|..+.++++.-|+..+ ....|. ..++|+.+|+ ++....+|.. .+.+++.+.|.++-..
T Consensus 18 ~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~--k~k~~~~~Gi---~~~~~~l~~~-------~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 18 EEIEKLKEKGITPKLAIILVGDDPASISYVRS--KQKAAEKLGI---EFELIELPED-------ISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHCT---EEEEEEES--HHHHHHHHH--HHHHHHHHT----EEEEEEE-TT-------SSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCcEEEEEecCCChhHHHHHHH--HHHHHHHcCC---ceEEEECCCC-------cCHHHHHHHHHHHhCC
Confidence 3456677779999999888886432 223332 3578999999 5666666542 2567899999999888
Q ss_pred cCCCEEEeeCCCCCCCCchHHHHHHH
Q 026131 137 CSIDLIITFDNYGVSGHCNHRDVHHG 162 (243)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H~DH~~~~~a 162 (243)
-+.+=|+.+-| ...|.|...+..+
T Consensus 86 ~~V~GIlvq~P--LP~~i~~~~i~~~ 109 (117)
T PF00763_consen 86 PSVHGILVQLP--LPKHIDERKILEA 109 (117)
T ss_dssp TT-SEEEEESS--SSTTSHHHHHHHT
T ss_pred CCCCEEEEcCC--CCCCccHHHHHhc
Confidence 88888888854 4468777665443
No 20
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=78.83 E-value=15 Score=31.44 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=46.8
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
+||++++...-....+-..+..+.+.|++|.+++...+... .....|+ ++..+...... . ..
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~------------~~~~~~~---~~~~~~~~~~~--~-~~ 62 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE------------ELEALGV---KVIPIPLDRRG--I-NP 62 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCccc------------ccccCCc---eEEeccccccc--c-Ch
Confidence 35666665221222344455556678999998877655321 1122354 33343332210 1 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+..-.....+.+.+++.+||+|+++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~dvv~~~~ 88 (359)
T cd03808 63 FKDLKALLRLYRLLRKERPDIVHTHT 88 (359)
T ss_pred HhHHHHHHHHHHHHHhcCCCEEEEcc
Confidence 12223345677888889999998874
No 21
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=77.95 E-value=13 Score=33.40 Aligned_cols=81 Identities=11% Similarity=0.075 Sum_probs=48.0
Q ss_pred CcEEEEecCchhhhcchHHH-------HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 40 KNVLLVIAHPDDESMFFSPT-------INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggt-------i~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
.+||.|..+.+ .||. +..+.++|.++.++++++++ +..+-....|+ +++.++.+.
T Consensus 2 ~~il~ii~~~~-----~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~----------~~~~~~~~~~i---~~~~~~~~~ 63 (374)
T TIGR03088 2 PLIVHVVYRFD-----VGGLENGLVNLINHLPADRYRHAVVALTEVS----------AFRKRIQRPDV---AFYALHKQP 63 (374)
T ss_pred ceEEEEeCCCC-----CCcHHHHHHHHHhhccccccceEEEEcCCCC----------hhHHHHHhcCc---eEEEeCCCC
Confidence 46888888864 3555 22223567888888876542 12222333576 455454321
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 113 ~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
. ..-.....+.+++++.+||+|.+|.
T Consensus 64 ~--------~~~~~~~~l~~~l~~~~~Divh~~~ 89 (374)
T TIGR03088 64 G--------KDVAVYPQLYRLLRQLRPDIVHTRN 89 (374)
T ss_pred C--------CChHHHHHHHHHHHHhCCCEEEEcc
Confidence 1 1113456788889999999998874
No 22
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=77.53 E-value=23 Score=27.12 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=47.8
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeCCC
Q 026131 71 HILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDNY 148 (243)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~~ 148 (243)
.++.+|-|. -.+++.++++.+-.+.+++..+++.... +.+++.+++.+.+.+.+. ++|+..|-.
T Consensus 3 ~ili~sHG~-------~A~gl~~s~~~i~G~~~~i~~i~~~~~~-------~~~~~~~~l~~~i~~~~~~~~vivltDl~ 68 (116)
T TIGR00824 3 AIIISGHGQ-------AAIALLKSAEMIFGEQNNVGAVPFVPGE-------NAETLQEKYNAALADLDTEEEVLFLVDIF 68 (116)
T ss_pred EEEEEecHH-------HHHHHHHHHHHHcCCcCCeEEEEcCCCc-------CHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 467777763 4678888888874455789999976421 456889999999998754 467777766
Q ss_pred CCC
Q 026131 149 GVS 151 (243)
Q Consensus 149 g~d 151 (243)
|++
T Consensus 69 GGS 71 (116)
T TIGR00824 69 GGS 71 (116)
T ss_pred CCC
Confidence 653
No 23
>PRK12342 hypothetical protein; Provisional
Probab=77.44 E-value=24 Score=31.15 Aligned_cols=80 Identities=6% Similarity=0.042 Sum_probs=46.6
Q ss_pred HhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEE
Q 026131 64 TSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLII 143 (243)
Q Consensus 64 ~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~ 143 (243)
.+.|.+|.++++-..+ ....++++-+=.+|+ ++.+.+..+.+. | .+.-.....|...|++.+||+|+
T Consensus 48 k~~g~~Vtvls~Gp~~------a~~~~l~r~alamGa--D~avli~d~~~~-g----~D~~ata~~La~~i~~~~~DLVl 114 (254)
T PRK12342 48 ATDGDEIAALTVGGSL------LQNSKVRKDVLSRGP--HSLYLVQDAQLE-H----ALPLDTAKALAAAIEKIGFDLLL 114 (254)
T ss_pred hhcCCEEEEEEeCCCh------HhHHHHHHHHHHcCC--CEEEEEecCccC-C----CCHHHHHHHHHHHHHHhCCCEEE
Confidence 3568777666654421 112234343444799 567666533221 1 25556788899999998999999
Q ss_pred eeCCCCCCCCchHH
Q 026131 144 TFDNYGVSGHCNHR 157 (243)
Q Consensus 144 t~d~~g~d~H~DH~ 157 (243)
+=. ...|+...+.
T Consensus 115 ~G~-~s~D~~tgqv 127 (254)
T PRK12342 115 FGE-GSGDLYAQQV 127 (254)
T ss_pred EcC-CcccCCCCCH
Confidence 853 2234444443
No 24
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=76.82 E-value=24 Score=32.76 Aligned_cols=95 Identities=16% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHH----HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHH--cCCCCCcEEEccC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINY----LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAV--LKIPLEQVKVLDL 110 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~----~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~--LGv~~~~~~~l~~ 110 (243)
.+.+.+++++-|.+.+.-...--+.. +.+++.+|.++++-.+.. . +|..+.+.. .|+ ++++.++.
T Consensus 24 ~~~m~i~V~~E~~~g~l~~~slEll~~Ar~La~~~~~v~avv~g~~~~-----~--~~~a~~l~~~~~Ga--d~V~~~~~ 94 (356)
T PLN00022 24 SRQISTLVVAEHEGGSVKPQSLSAVAAAKSLLGESSPISLLLAGSGPS-----L--QQAASHAASSHPSV--SEVLVADS 94 (356)
T ss_pred hcCCeEEEEEeCcCCEeCHHHHHHHHHHHHhcCCCCceEEEEEcCCcc-----h--hhHHHHHhhccCCC--CEEEEecC
Confidence 34567899999987754322211111 111223566665533310 0 122222332 599 78888887
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 111 VDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 111 pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
|.+. .+..+...+.+.+++++.+|++|+.+
T Consensus 95 ~~l~-----~y~~e~~a~al~~li~~~~P~~vL~~ 124 (356)
T PLN00022 95 DKLT-----HPLAEPWAKLVVLAQQKGGYSHILAA 124 (356)
T ss_pred chhc-----ccChHHHHHHHHHHHHhcCCCEEEEC
Confidence 6542 13456788999999999999999886
No 25
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=76.27 E-value=4 Score=33.93 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=24.5
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
.....|||++++|++|+. +--...++.++|..+.+|+
T Consensus 79 lt~~DRVllfs~~~~~~e--~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEE--AVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp --TT-EEEEEES-S--HH--HHHHHHHHHHHT--EEEEE
T ss_pred ccccceEEEEeCCCCCHH--HHHHHHHHHHCCCCEEEEE
Confidence 567889999999999965 4677888889999988887
No 26
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=74.63 E-value=20 Score=33.57 Aligned_cols=106 Identities=10% Similarity=0.143 Sum_probs=64.7
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHH-HHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDEL-HRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~-~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
+.+++.-|+ .+=..+.+.++.+.+.--..||.|. +-|..|+ ....+.+|+.. .-+.|+.-+-..++.+
T Consensus 7 ~~I~GTRPE--~iKmapli~~~~~~~~~~~~vi~TG-------QH~d~em~~~~le~~~i~~-pdy~L~i~~~~~tl~~- 75 (383)
T COG0381 7 LTIFGTRPE--AIKMAPLVKALEKDPDFELIVIHTG-------QHRDYEMLDQVLELFGIRK-PDYDLNIMKPGQTLGE- 75 (383)
T ss_pred EEEEecCHH--HHHHhHHHHHHHhCCCCceEEEEec-------ccccHHHHHHHHHHhCCCC-CCcchhccccCCCHHH-
Confidence 445566664 4456899999988875455667774 5565565 45688899852 2234443221111211
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHH
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~ 167 (243)
-...+...+.+++.+.+||+|+.| .|-..+..++..|+
T Consensus 76 -~t~~~i~~~~~vl~~~kPD~VlVh--------GDT~t~lA~alaa~ 113 (383)
T COG0381 76 -ITGNIIEGLSKVLEEEKPDLVLVH--------GDTNTTLAGALAAF 113 (383)
T ss_pred -HHHHHHHHHHHHHHhhCCCEEEEe--------CCcchHHHHHHHHH
Confidence 224667788999999999999986 24444444455554
No 27
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=73.20 E-value=19 Score=31.84 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCCEEEee
Q 026131 126 LAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~ 145 (243)
....+.+++++.+||+|+++
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~ 97 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGF 97 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEc
Confidence 44567888999999999997
No 28
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=72.40 E-value=30 Score=29.24 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=51.1
Q ss_pred CcEEEEEEeCCCCCCchHHHH-HHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 68 HNLHILCMSNGNADGMGNIRK-DELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 68 ~~V~vv~lT~G~~~~~~~~R~-~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.++.++++++.-..+...-+. .-+.+.++.+|.....+..--.|| +.+++.+.|.+.+++.+.|+|+|.
T Consensus 4 ~~~aIItvSd~~~~G~i~D~ng~~L~~~L~~~G~~g~~v~~~iVpD---------d~~~I~~aL~~a~~~~~~DlIITT- 73 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDKGIPALEEWLASALTSPFEIETRLIPD---------EQDLIEQTLIELVDEMGCDLVLTT- 73 (193)
T ss_pred cEEEEEEEcCcCCCCceeechHHHHHHHHHHcCCCCceEEEEECCC---------CHHHHHHHHHHHhhcCCCCEEEEC-
Confidence 356666666643322211122 233445666765211122212233 345778888888776679999995
Q ss_pred CCCCCCCchHHHHHHHHHHHHhh
Q 026131 147 NYGVSGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 147 ~~g~d~H~DH~~~~~av~~a~~~ 169 (243)
|+.+-.+.-.+.+++..++.+
T Consensus 74 --GGtg~g~rDvTpeAv~~l~~k 94 (193)
T PRK09417 74 --GGTGPARRDVTPEATLAVADK 94 (193)
T ss_pred --CCCCCCCCCcHHHHHHHHhCC
Confidence 666667777777888877643
No 29
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=71.33 E-value=14 Score=32.86 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCCEEEee
Q 026131 126 LAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~ 145 (243)
....+.+++++.+||+|+++
T Consensus 77 ~~~~~~~~i~~~~pDvI~~~ 96 (350)
T cd03785 77 GVLQARKILKKFKPDVVVGF 96 (350)
T ss_pred HHHHHHHHHHhcCCCEEEEC
Confidence 34567788899999999987
No 30
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=70.12 E-value=26 Score=34.83 Aligned_cols=25 Identities=8% Similarity=0.037 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
.+.+.+.+.+++.+||+++.-|..|
T Consensus 297 ~~~~~l~~~i~~~kPD~vIlID~Pg 321 (608)
T PRK01021 297 YRYRKLYKTILKTNPRTVICIDFPD 321 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4566677888889999999987544
No 31
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=69.99 E-value=38 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=39.0
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
+.+.++..|+ ++.... .+| +.+++.+.|.+.+++.+.|+|+|. |+.+..+.-.+.+++.++
T Consensus 25 l~~~l~~~G~---~v~~~~~v~D---------d~~~i~~~l~~~~~~~~~DlVitt---GG~s~g~~D~t~~al~~~ 86 (152)
T cd00886 25 LVELLEEAGH---EVVAYEIVPD---------DKDEIREALIEWADEDGVDLILTT---GGTGLAPRDVTPEATRPL 86 (152)
T ss_pred HHHHHHHcCC---eeeeEEEcCC---------CHHHHHHHHHHHHhcCCCCEEEEC---CCcCCCCCcCcHHHHHHH
Confidence 4556778887 333333 222 345778888888775579999996 555555555566666555
No 32
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=69.15 E-value=25 Score=30.74 Aligned_cols=21 Identities=5% Similarity=-0.110 Sum_probs=15.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCC
Q 026131 127 AKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
...+.+++++.+||+|.++.+
T Consensus 68 ~~~~~~~~~~~~pdiv~~~~~ 88 (360)
T cd04951 68 LWKLRKILRQFKPDVVHAHMF 88 (360)
T ss_pred HHHHHHHHHhcCCCEEEEccc
Confidence 345677888899999988743
No 33
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=68.76 E-value=49 Score=25.55 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHHHhCCCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 61 NYLTSRRHN-LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 61 ~~~~~~G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
.++.++|++ +.++. ..........|.+.++++++..|++.....+.... ............+++.+|
T Consensus 2 ~~L~~~G~r~i~~i~--~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~p 69 (160)
T PF13377_consen 2 DYLIERGHRRIAFIG--GPPNSSVSRERLEGFREALKEHGIEFEELIFFSDD----------DSEDAREAQLLWLRRLRP 69 (160)
T ss_dssp HHHHHTT-SSEEEEE--SSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESS----------SHHHHHHHHHHHHHTCSS
T ss_pred hHHHHCCCCeEEEEe--cCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCC----------cchhHHHHHHHHHhcCCC
Confidence 467788864 54444 22223456788899999999999953322222211 111222222224565699
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
|.||+.+ ...+..+..++++.+ ++++.+-...
T Consensus 70 daii~~~----------~~~a~~~~~~l~~~g~~vP~di~vv~~~ 104 (160)
T PF13377_consen 70 DAIICSN----------DRLALGVLRALRELGIRVPQDISVVSFD 104 (160)
T ss_dssp SEEEESS----------HHHHHHHHHHHHHTTSCTTTTSEEEEES
T ss_pred cEEEEcC----------HHHHHHHHHHHHHcCCcccccccEEEec
Confidence 9999862 134444555555432 3455554433
No 34
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=68.40 E-value=25 Score=28.64 Aligned_cols=63 Identities=10% Similarity=0.099 Sum_probs=39.5
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHh
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLN 168 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~ 168 (243)
+.+.++.+|+ ++.... .|| +.+++.+.+.+.+...+.|+|+|. |+.+..+.-.+.+++.+.++
T Consensus 27 l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~~~~~~~~DlVItt---GGtg~g~~D~t~eal~~l~~ 90 (163)
T TIGR02667 27 LVERLTEAGH---RLADRAIVKD---------DIYQIRAQVSAWIADPDVQVILIT---GGTGFTGRDVTPEALEPLFD 90 (163)
T ss_pred HHHHHHHCCC---eEEEEEEcCC---------CHHHHHHHHHHHHhcCCCCEEEEC---CCcCCCCCCCcHHHHHHHHC
Confidence 4445777888 233332 233 345778888887765679999996 55555555556666666543
No 35
>COG2249 MdaB Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only]
Probab=66.74 E-value=4.4 Score=34.12 Aligned_cols=30 Identities=27% Similarity=0.600 Sum_probs=21.5
Q ss_pred CcEEEEecCchhhhcchHHHHH-----HHHhCCCcEEE
Q 026131 40 KNVLLVIAHPDDESMFFSPTIN-----YLTSRRHNLHI 72 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~-----~~~~~G~~V~v 72 (243)
+++|+|.|||+ +.+ +..++ .+.++|++|..
T Consensus 1 mkiLii~aHP~-~sf--~~~~~~~~~~~~n~~~~~v~~ 35 (189)
T COG2249 1 MKILIIYAHPN-ESF--THALSDAALERLNEAGHEVAL 35 (189)
T ss_pred CcEEEEEeCch-hhh--hHHHHHHHHHHHHHcchHHHh
Confidence 48999999999 653 55566 66667766543
No 36
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=66.46 E-value=47 Score=30.25 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHhCCCcEEEEEEeCCC
Q 026131 59 TINYLTSRRHNLHILCMSNGN 79 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~ 79 (243)
....|.++|++|+++|..+..
T Consensus 16 la~~L~~~G~~v~~~~~~~~~ 36 (396)
T cd03818 16 LAPALAAQGHEVVFLTEPNAA 36 (396)
T ss_pred HHHHHHHCCCEEEEEecCCCC
Confidence 555667789999999888764
No 37
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.41 E-value=60 Score=27.23 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE
Q 026131 63 LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL 141 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~ 141 (243)
+.++|++ .+++++..........|.+.++++++..|++........ .+ ++.+...+.+.+++++. +|+.
T Consensus 117 l~~~g~~-~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~l~~~~~~~a 186 (270)
T cd06294 117 LIKLGHK-KIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIIS-LD--------FSEEGGYKALKKLLEQHPRPTA 186 (270)
T ss_pred HHHcCCc-cEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEe-cC--------CchHHHHHHHHHHHhCCCCCCE
Confidence 4456654 555555322223356788889999998886322211111 11 23334566777777654 5899
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 187 i~~~ 190 (270)
T cd06294 187 IVAT 190 (270)
T ss_pred EEEC
Confidence 9986
No 38
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=65.78 E-value=52 Score=29.04 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=42.4
Q ss_pred HHHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ | .+|+++++-..+.+ ..+..+-|=.+|+ ++-+.+..+.+. | .+.......|...+++..
T Consensus 46 lrlke~~~g~~Vtvvs~Gp~~a~------~~~~lr~aLAmGa--D~avli~d~~~~-g----~D~~~tA~~La~ai~~~~ 112 (256)
T PRK03359 46 CQLKQQAAEAQVTALSVGGKALT------NAKGRKDVLSRGP--DELIVVIDDQFE-Q----ALPQQTASALAAAAQKAG 112 (256)
T ss_pred HHHhhhcCCCEEEEEEECCcchh------hHHHHHHHHHcCC--CEEEEEecCccc-C----cCHHHHHHHHHHHHHHhC
Confidence 345554 3 57766655433211 1232333444799 566666533221 1 255577888999999999
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||+|++=
T Consensus 113 ~DLVl~G 119 (256)
T PRK03359 113 FDLILCG 119 (256)
T ss_pred CCEEEEc
Confidence 9999985
No 39
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=65.57 E-value=6.1 Score=32.75 Aligned_cols=74 Identities=9% Similarity=0.056 Sum_probs=40.2
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 57 SPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 57 Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
.-.|.++.+.|.+..+..+|++| +...|..++.++++..|+ ..+.+.++|.. .+......++.+.|...+++
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~E---L~~l~Vp~L~~~~~~~Gi---~~~h~PI~D~~--aPd~~~~~~i~~eL~~~L~~ 132 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDHE---LARLGVPDLGEAAQARGI---AWHHLPIPDGS--APDFAAAWQILEELAARLEN 132 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HHH---HHHTT-TTHHHHHHHTT----EEEE----TTS-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEeCcHHH---HHHcCCccHHHHHHHcCC---EEEecCccCCC--CCCHHHHHHHHHHHHHHHHc
Confidence 56788899999998877777764 556667788899999999 56677777752 11110111345556666665
Q ss_pred cC
Q 026131 137 CS 138 (243)
Q Consensus 137 ~~ 138 (243)
-+
T Consensus 133 g~ 134 (168)
T PF05706_consen 133 GR 134 (168)
T ss_dssp T-
T ss_pred CC
Confidence 33
No 40
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=64.22 E-value=8.2 Score=34.29 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....+.+.+++.+||+|.++.
T Consensus 71 ~~~~~l~~~i~~~~~divh~~~ 92 (371)
T cd04962 71 ALASKIAEVAKRYKLDLLHVHY 92 (371)
T ss_pred HHHHHHHHHHhcCCccEEeecc
Confidence 3457788888889999998873
No 41
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=63.97 E-value=57 Score=27.36 Aligned_cols=76 Identities=11% Similarity=0.164 Sum_probs=42.0
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCc---hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 60 INYLTSRRHNLHILCMSNGNADGM---GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~---~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
+..+.++|.+|..++.+.+...+. -....+.+++.|+.+|+| ++..+.+.. ... ..+++.+.|.++-++
T Consensus 16 l~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip---l~~i~~~~~--~e~---~~~~l~~~l~~~~~~ 87 (194)
T cd01994 16 LYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP---LIRIEISGE--EED---EVEDLKELLRKLKEE 87 (194)
T ss_pred HHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc---EEEEeCCCC--chH---HHHHHHHHHHHHHHc
Confidence 444556899988887776543221 112445677889999995 445554321 100 113444455554444
Q ss_pred cCCCEEEe
Q 026131 137 CSIDLIIT 144 (243)
Q Consensus 137 ~~Pd~V~t 144 (243)
..+.|++
T Consensus 88 -g~~~vv~ 94 (194)
T cd01994 88 -GVDAVVF 94 (194)
T ss_pred -CCCEEEE
Confidence 5787765
No 42
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=62.83 E-value=64 Score=29.06 Aligned_cols=115 Identities=16% Similarity=0.121 Sum_probs=62.4
Q ss_pred ecCchhhhc--------chHHHHHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcC-CCCCcEEEccCC
Q 026131 46 IAHPDDESM--------FFSPTINYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLK-IPLEQVKVLDLV 111 (243)
Q Consensus 46 ~aHPDDE~l--------~~Ggti~~~~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LG-v~~~~~~~l~~p 111 (243)
.-+.++|.+ ..||.+..+.++|+++.-.+.+...++|. -+.=..|+.+.++.-| + +-.+|+.-
T Consensus 29 ~~~~G~~~~~~~~~~~~~~~g~~~~a~~~g~e~vp~~~a~A~P~G~v~~~aye~l~~eil~~l~~agp~---Dgv~L~LH 105 (292)
T PF07364_consen 29 GYLRGEELLAAFRGTNTEIGGFLDAAEAQGWEVVPLLWAAAEPGGPVTREAYERLRDEILDRLRAAGPL---DGVLLDLH 105 (292)
T ss_dssp -EEETHHHHHHHHTS-SHHHHHHHHHHHTT-EEEEEEEEEE-SEE-B-HHHHHHHHHHHHHHHHHS------SEEEEEE-
T ss_pred cccccHHHHhhhccCCcchHHHHHHHHHCCCEEEeeEeeeecCCCcccHHHHHHHHHHHHHHHHhcCCc---CEEEEecc
Confidence 345567766 68999999999999998888888777653 1233466666666654 4 34565532
Q ss_pred CC--CCCccccCChHHHHHHHHHHHHhcCCC--EEEeeCCCC-----------------CCCCchHHHHHHHHHHHHh
Q 026131 112 DF--QDGFDKLWNHKSLAKIVEEEVVNCSID--LIITFDNYG-----------------VSGHCNHRDVHHGIWSYLN 168 (243)
Q Consensus 112 d~--~d~~~~~~~~~~l~~~l~~~i~~~~Pd--~V~t~d~~g-----------------~d~H~DH~~~~~av~~a~~ 168 (243)
-. -++.+. ..-++.++|.+++ .|| ++.|.|+|+ .+.|.|=..+++-+.+.+.
T Consensus 106 GAmv~e~~~D--~EG~Ll~rvR~~v---Gp~vpI~~tlDlHaNvs~~mv~~ad~~~~yrtyPH~D~~etg~~aa~ll~ 178 (292)
T PF07364_consen 106 GAMVAEGYDD--GEGDLLRRVRAIV---GPDVPIAATLDLHANVSPRMVEAADIIVGYRTYPHIDMYETGERAARLLL 178 (292)
T ss_dssp S---BSS-SS--HHHHHHHHHHHHH---TTTSEEEEEE-TT----HHHHHH-SEEEE---SS---HHHHHHHHHHHHH
T ss_pred CcEeecCCCC--chHHHHHHHHHHh---CCCCeEEEEeCCCCCccHHHHHhCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 11 011110 1125555555544 455 456777776 4789998888876666543
No 43
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=61.93 E-value=77 Score=27.74 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=41.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~P 139 (243)
.++.+.|++ .+.+++..........|.+-.+++++..|++. ......+ |+.+...+.+.+++++. +|
T Consensus 172 ~~L~~~G~r-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~~~~--------~~~~~~~~~~~~~l~~~~~~ 239 (328)
T PRK11303 172 ESLLKFPAE-SILLLGALPELSVSFEREQGFRQALKDDPREV---HYLYANS--------FEREAGAQLFEKWLETHPMP 239 (328)
T ss_pred HHHHHCCCC-eEEEEeCccccccHHHHHHHHHHHHHHcCCCc---eEEEeCC--------CChHHHHHHHHHHHcCCCCC
Confidence 345667765 34444422222345678888999999888732 1111111 23334455667777654 58
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
|.|++.
T Consensus 240 ~ai~~~ 245 (328)
T PRK11303 240 DALFTT 245 (328)
T ss_pred CEEEEc
Confidence 999986
No 44
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=61.29 E-value=81 Score=27.53 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=44.5
Q ss_pred cEEEEecCchhhhcchHHHHHH-------HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 41 NVLLVIAHPDDESMFFSPTINY-------LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~-------~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
+||++.+.. +-||.-.. +.++|++|++++...+.. +........|+ ++..+..+..
T Consensus 1 kIl~~~~~~-----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~---------~~~~~~~~~~~---~~~~~~~~~~ 63 (358)
T cd03812 1 KILHIVGTM-----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEG---------DYDDEIEKLGG---KIYYIPARKK 63 (358)
T ss_pred CEEEEeCCC-----CCccHHHHHHHHHHhcCccceEEEEEEeCCCCc---------chHHHHHHcCC---eEEEecCCCc
Confidence 577777766 23343222 234789998887765432 11223344566 3333322110
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 114 ~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
........+.+++++.+||+|+++.
T Consensus 64 --------~~~~~~~~~~~~~~~~~~Dvv~~~~ 88 (358)
T cd03812 64 --------NPLKYFKKLYKLIKKNKYDIVHVHG 88 (358)
T ss_pred --------cHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 1123345566778889999999874
No 45
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=60.15 E-value=1.4e+02 Score=27.46 Aligned_cols=34 Identities=26% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEE
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHI 72 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~v 72 (243)
+.+.+-+.+-.--|+..+-+.+.++.+++.++.+
T Consensus 49 ~~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i 82 (425)
T PRK05749 49 KGPLIWFHAVSVGETRAAIPLIRALRKRYPDLPI 82 (425)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcE
Confidence 3455556666666999999999999887644443
No 46
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=59.85 E-value=97 Score=27.48 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=44.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd 140 (243)
.++.++|+--.++.+|-|........| -|=.+|+ ++.+.+..+.+. + .+.......|.+.+++.+||
T Consensus 47 lrLke~~~~~eV~vlt~Gp~~a~~~lr------~aLAmGa--Draili~d~~~~-~----~d~~~ta~~Laa~~~~~~~~ 113 (260)
T COG2086 47 LRLKEKGYGGEVTVLTMGPPQAEEALR------EALAMGA--DRAILITDRAFA-G----ADPLATAKALAAAVKKIGPD 113 (260)
T ss_pred HHhhccCCCceEEEEEecchhhHHHHH------HHHhcCC--CeEEEEeccccc-C----ccHHHHHHHHHHHHHhcCCC
Confidence 355553444444556666433222233 3566899 667666643221 1 24557788999999999999
Q ss_pred EEEeeC
Q 026131 141 LIITFD 146 (243)
Q Consensus 141 ~V~t~d 146 (243)
+|++=.
T Consensus 114 LVl~G~ 119 (260)
T COG2086 114 LVLTGK 119 (260)
T ss_pred EEEEec
Confidence 999854
No 47
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.63 E-value=7.9 Score=30.66 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=21.6
Q ss_pred CchHHHHHHHHH--HHHHHHHHHhhccCc
Q 026131 1 MSWLLVIVSTIV--VWVASLFKILNSSRS 27 (243)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 27 (243)
|.|++.++|.|+ .+.++++|+...+.+
T Consensus 6 ~~W~~a~igLvvGi~IG~li~Rlt~~~~k 34 (138)
T COG3105 6 MTWEYALIGLVVGIIIGALIARLTNRKLK 34 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 689999999999 566999997666544
No 48
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=58.37 E-value=70 Score=24.80 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCCCcEEEccC-CCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 90 ELHRACAVLKIPLEQVKVLDL-VDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~~-pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
-+.+.++..|. ++..... +| +.+++.+.+.+.+++ .|+|+|. |+.+..++-.+.+++.++
T Consensus 23 ~l~~~l~~~G~---~v~~~~~v~D---------d~~~i~~~i~~~~~~--~Dlvitt---GG~g~g~~D~t~~ai~~~ 83 (133)
T cd00758 23 ALEALLEDLGC---EVIYAGVVPD---------DADSIRAALIEASRE--ADLVLTT---GGTGVGRRDVTPEALAEL 83 (133)
T ss_pred HHHHHHHHCCC---EEEEeeecCC---------CHHHHHHHHHHHHhc--CCEEEEC---CCCCCCCCcchHHHHHHh
Confidence 34455667887 3433322 22 345778888888765 8999996 555555555556666665
No 49
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=57.80 E-value=1e+02 Score=27.05 Aligned_cols=75 Identities=9% Similarity=0.051 Sum_probs=42.2
Q ss_pred HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-
Q 026131 59 TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC- 137 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~- 137 (243)
...++.+.|++ .+.+++..........|.+-.+++++..|++. .....+ + ++.+.-.+.+.+++++.
T Consensus 169 ~~~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~-~~~~~~--~--------~~~~~~~~~~~~ll~~~~ 236 (327)
T TIGR02417 169 LIERLLSQHAD-EFWYLGAQPELSVSRDRLAGFRQALKQATLEV-EWVYGG--N--------YSRESGYQMFAKLCARLG 236 (327)
T ss_pred HHHHHHHCCCC-eEEEEeCcccchhHHHHHHHHHHHHHHcCCCh-HhEEeC--C--------CChHHHHHHHHHHHhcCC
Confidence 34456677864 23344322222345678888999998888732 111111 1 23334456667777654
Q ss_pred -CCCEEEee
Q 026131 138 -SIDLIITF 145 (243)
Q Consensus 138 -~Pd~V~t~ 145 (243)
+|+.||+.
T Consensus 237 ~~~~Ai~~~ 245 (327)
T TIGR02417 237 RLPQALFTT 245 (327)
T ss_pred CCCcEEEEc
Confidence 48999986
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=57.74 E-value=29 Score=30.05 Aligned_cols=20 Identities=10% Similarity=0.034 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCCCEEEeeC
Q 026131 127 AKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d 146 (243)
...+.+.+++.+||+|+++.
T Consensus 72 ~~~~~~~~~~~~pdii~~~~ 91 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIAT 91 (364)
T ss_pred hhhHHHHHHhcCCCEEEEec
Confidence 34566777889999998873
No 51
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=57.55 E-value=1.1e+02 Score=25.53 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=46.1
Q ss_pred hHHHHHHH-HhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 56 FSPTINYL-TSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 56 ~Ggti~~~-~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
+|..++++ .+.|++ .+.++...........|.+..+++++..|++.+.. .....+ |+.++..+.+.+++
T Consensus 103 ~g~~~~~~l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~l 172 (264)
T cd06274 103 GAAELTRELLAAPPE-EVLFLGGLPELSPSRERLAGFRQALADAGLPVQPD-WIYAEG--------YSPESGYQLMAELL 172 (264)
T ss_pred HHHHHHHHHHHCCCC-cEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcc-eeecCC--------CChHHHHHHHHHHH
Confidence 45555553 345654 33444432222345778899999999888632111 111111 34445567778888
Q ss_pred Hhc--CCCEEEee
Q 026131 135 VNC--SIDLIITF 145 (243)
Q Consensus 135 ~~~--~Pd~V~t~ 145 (243)
++. +|+.|++.
T Consensus 173 ~~~~~~~~ai~~~ 185 (264)
T cd06274 173 ARLGRLPRALFTT 185 (264)
T ss_pred ccCCCCCcEEEEc
Confidence 765 48999886
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=57.46 E-value=15 Score=31.66 Aligned_cols=22 Identities=5% Similarity=0.027 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....+.+++++.+||+|+++.
T Consensus 83 ~~~~~~~~~~~~~~~dii~~~~ 104 (359)
T cd03823 83 AVVAEFARLLEDFRPDVVHFHH 104 (359)
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 5677788999999999999884
No 53
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=57.29 E-value=75 Score=24.23 Aligned_cols=73 Identities=12% Similarity=0.045 Sum_probs=35.5
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
+..++++|.+..+-.-.+||..+ .-...+..++++.+|+ +++.+..... . ...+.++.+.+.+++. +
T Consensus 20 ~~~la~~GfktVInlRpd~E~~~--qp~~~~~~~~a~~~Gl---~y~~iPv~~~-----~--~~~~~v~~f~~~l~~~~~ 87 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLRPDGEEPG--QPSSAEEAAAAEALGL---QYVHIPVDGG-----A--ITEEDVEAFADALESLPK 87 (110)
T ss_dssp HHHHHHCT--EEEE-S-TTSTTT---T-HHCHHHHHHHCT----EEEE----TT-----T----HHHHHHHHHHHHTTTT
T ss_pred HHHHHHCCCcEEEECCCCCCCCC--CCCHHHHHHHHHHcCC---eEEEeecCCC-----C--CCHHHHHHHHHHHHhCCC
Confidence 56788899876554455555432 3345667788999998 4555554321 1 1235566667777653 3
Q ss_pred CCEEEe
Q 026131 139 IDLIIT 144 (243)
Q Consensus 139 Pd~V~t 144 (243)
|-.+++
T Consensus 88 Pvl~hC 93 (110)
T PF04273_consen 88 PVLAHC 93 (110)
T ss_dssp SEEEE-
T ss_pred CEEEEC
Confidence 433333
No 54
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=57.03 E-value=17 Score=37.34 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=37.2
Q ss_pred HHHHhhccCcccccccc-cCCCCCcEEEEecCc----hhhhcc---hHHHH---H------------HHHhCCCcE--EE
Q 026131 18 LFKILNSSRSQSNAAFL-TTGDKKNVLLVIAHP----DDESMF---FSPTI---N------------YLTSRRHNL--HI 72 (243)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~vL~v~aHP----DDE~l~---~Ggti---~------------~~~~~G~~V--~v 72 (243)
|.-++-+-++..-..|. ......+|++|++|- .+ .+| +||-. + +++++|++| .|
T Consensus 233 l~~~~~~p~~~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~-~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V 311 (784)
T TIGR02470 233 LDDLLEAPDPSVLEAFLGRIPMVFNVVILSPHGYFGQEN-VLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKI 311 (784)
T ss_pred HHHHHhCCChhHHHHHHhhCCccceEEEEecccccCCcc-ccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceE
Confidence 33444444444444452 356778999999998 44 454 46643 1 245678754 56
Q ss_pred EEEeCCCC
Q 026131 73 LCMSNGNA 80 (243)
Q Consensus 73 v~lT~G~~ 80 (243)
.++|....
T Consensus 312 ~I~TR~~~ 319 (784)
T TIGR02470 312 LIVTRLIP 319 (784)
T ss_pred EEEecCCC
Confidence 77777654
No 55
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=55.96 E-value=85 Score=28.73 Aligned_cols=75 Identities=11% Similarity=0.158 Sum_probs=49.6
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-ccCChHHHHHHHHHHHHhc
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~-~~~~~~~l~~~l~~~i~~~ 137 (243)
|+-++++.|... +.+-.+-.|..+-+..+|+ ..+..++.|+.+|... +.|+.+.++.+-.+.|++.
T Consensus 34 I~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~~~~~~~~Gi--~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~ 111 (322)
T PRK13384 34 IYPIFIEEHITDAVPISTLPGISRLPESALADEIERLYALGI--RYVMPFGISHHKDAKGSDTWDDNGLLARMVRTIKAA 111 (322)
T ss_pred eeeEEEecCCCCceecCCCCCcceECHHHHHHHHHHHHHcCC--CEEEEeCCCCCCCCCcccccCCCChHHHHHHHHHHH
Confidence 566778887542 2344455555666777999 5788888887665432 2356666777766777777
Q ss_pred CCCEEEeeC
Q 026131 138 SIDLIITFD 146 (243)
Q Consensus 138 ~Pd~V~t~d 146 (243)
-||+++..|
T Consensus 112 ~pdl~vi~D 120 (322)
T PRK13384 112 VPEMMVIPD 120 (322)
T ss_pred CCCeEEEee
Confidence 799877555
No 56
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=55.79 E-value=53 Score=25.56 Aligned_cols=51 Identities=16% Similarity=0.157 Sum_probs=33.9
Q ss_pred HHHHHhCCCc-EEEEEEeCCCCC-----CchHHHHHHHHHHHHHcCCCCCcEEEccC
Q 026131 60 INYLTSRRHN-LHILCMSNGNAD-----GMGNIRKDELHRACAVLKIPLEQVKVLDL 110 (243)
Q Consensus 60 i~~~~~~G~~-V~vv~lT~G~~~-----~~~~~R~~E~~~A~~~LGv~~~~~~~l~~ 110 (243)
|.+..++|.+ |.++-+-.|+.. ...+.|-+.+++..+.+|++++++.+...
T Consensus 45 il~Af~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~ 101 (124)
T PF02662_consen 45 ILRAFEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWI 101 (124)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEe
Confidence 4555566765 333334434431 24677888899999999999988877553
No 57
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=55.24 E-value=49 Score=31.15 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCCEEEeeCC
Q 026131 129 IVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~ 147 (243)
.+.+.+++.+||+|.++++
T Consensus 135 ~l~~~i~~~kpDiIh~~~~ 153 (465)
T PLN02871 135 RIISEVARFKPDLIHASSP 153 (465)
T ss_pred HHHHHHHhCCCCEEEECCC
Confidence 5677888899999988743
No 58
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=54.92 E-value=85 Score=26.29 Aligned_cols=110 Identities=17% Similarity=0.165 Sum_probs=57.2
Q ss_pred hhhhcchHHHHHH-HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHH
Q 026131 50 DDESMFFSPTINY-LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAK 128 (243)
Q Consensus 50 DDE~l~~Ggti~~-~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~ 128 (243)
|++. +|-.+++ +.+.|++ .+++++..........|.+-++++++..|++... ......+ ++.++..+
T Consensus 94 d~~~--~~~~~~~~l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~ 161 (261)
T cd06272 94 DNEK--AMELAVLYLAEKGHK-KIAYIGDLSLDRRQRKRFKGFLETCDENGISISD-SHIDVDG--------LSAEGGDN 161 (261)
T ss_pred ChHH--HHHHHHHHHHHcCch-hEEEeecccccccHHHHHHHHHHHHHHcCCCCCH-HHeeeCC--------CCHHHHHH
Confidence 5544 3444443 4456765 4455543332334566778888899888863211 1111100 12334456
Q ss_pred HHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 129 IVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 129 ~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
.+.+++++. +|+.|++.+ . ..+..+.++++..+ ++++.+....
T Consensus 162 ~~~~~l~~~~~~~ai~~~~--d--------~~a~~~~~~l~~~g~~vp~dv~vvg~d 208 (261)
T cd06272 162 AAKKLLKESDLPTAIICGS--Y--------DIALGVLSALNKQGISIPEDIEIISYD 208 (261)
T ss_pred HHHHHHcCCCCCCEEEECC--c--------HHHHHHHHHHHHhCCCCCCceEEEeeC
Confidence 667777665 489999873 1 23344555554433 3455555443
No 59
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=54.88 E-value=7.9 Score=29.44 Aligned_cols=70 Identities=13% Similarity=0.059 Sum_probs=34.0
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH--H
Q 026131 58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV--V 135 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i--~ 135 (243)
.....+.++|++|.+++...... ..| ....|+ .+..+..+.... .+........+.+++ +
T Consensus 9 ~l~~~L~~~G~~V~v~~~~~~~~-------~~~----~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 70 (160)
T PF13579_consen 9 ELARALAARGHEVTVVTPQPDPE-------DDE----EEEDGV---RVHRLPLPRRPW----PLRLLRFLRRLRRLLAAR 70 (160)
T ss_dssp HHHHHHHHTT-EEEEEEE---GG-------G-S----EEETTE---EEEEE--S-SSS----GGGHCCHHHHHHHHCHHC
T ss_pred HHHHHHHHCCCEEEEEecCCCCc-------ccc----cccCCc---eEEeccCCccch----hhhhHHHHHHHHHHHhhh
Confidence 34566778999999888655432 011 112344 455555544321 112223456677777 8
Q ss_pred hcCCCEEEee
Q 026131 136 NCSIDLIITF 145 (243)
Q Consensus 136 ~~~Pd~V~t~ 145 (243)
+.+||+|.++
T Consensus 71 ~~~~Dvv~~~ 80 (160)
T PF13579_consen 71 RERPDVVHAH 80 (160)
T ss_dssp T---SEEEEE
T ss_pred ccCCeEEEec
Confidence 8899999988
No 60
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=54.44 E-value=59 Score=27.51 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....+.+.+++.+||+|+++.
T Consensus 68 ~~~~~~~~~~~~~~~dii~~~~ 89 (353)
T cd03811 68 LAILRLRRLLRKEKPDVVISHL 89 (353)
T ss_pred hHHHHHHHHHHhcCCCEEEEcC
Confidence 3456677888888999998874
No 61
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=54.16 E-value=98 Score=27.30 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=42.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
++.+.|++ .+++++..........|.+-++++++..|++........ ..++.++..+.+.+++++. +||
T Consensus 172 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~Gf~~~l~~~gi~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 241 (341)
T PRK10703 172 YLIERGHR-DIGVIPGPLERNTGAGRLAGFMKAMEEANIKVPEEWIVQ---------GDFEPESGYEAMQQILSQKHRPT 241 (341)
T ss_pred HHHHCCCC-cEEEEeCCccccchHHHHHHHHHHHHHcCCCCChHHeEe---------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 34456754 445554322223456788888999988887421111110 0123345566777777654 589
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 242 ai~~~ 246 (341)
T PRK10703 242 AVFCG 246 (341)
T ss_pred EEEEC
Confidence 99886
No 62
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=53.90 E-value=1.1e+02 Score=25.43 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=38.1
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE-EEeeCCCCC
Q 026131 72 ILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL-IITFDNYGV 150 (243)
Q Consensus 72 vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~-V~t~d~~g~ 150 (243)
++.+|+|+ +.-++..+.|++-+|. +|.-... |-++....+++ .++|.+..-|- ++.||-.|.
T Consensus 2 VIlvTDGD-----~~A~ravE~aa~~iGg---RCIS~S~-----GNPT~lsG~el----V~lIk~a~~DPV~VMfDD~G~ 64 (180)
T PF14097_consen 2 VILVTDGD-----EYAKRAVEIAAKNIGG---RCISQSA-----GNPTPLSGEEL----VELIKQAPHDPVLVMFDDKGF 64 (180)
T ss_pred EEEEECCh-----HHHHHHHHHHHHHhCc---EEEeccC-----CCCCcCCHHHH----HHHHHhCCCCCEEEEEeCCCC
Confidence 68899997 4556677789999998 5655442 11233455555 55555555553 445765553
No 63
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=53.48 E-value=34 Score=29.77 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=27.0
Q ss_pred EEEEecC-chhhhcchHHHHHHHHhCCCcEEEEEEeCCC
Q 026131 42 VLLVIAH-PDDESMFFSPTINYLTSRRHNLHILCMSNGN 79 (243)
Q Consensus 42 vL~v~aH-PDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~ 79 (243)
||+++.| |.-.....-..+..+.++|++|.+++...+.
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~~ 40 (355)
T cd03799 2 IAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRPPE 40 (355)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 5555544 4423345778888888999999999887664
No 64
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=52.98 E-value=1.6e+02 Score=25.94 Aligned_cols=74 Identities=14% Similarity=0.173 Sum_probs=40.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+.+++..........|.+-..++++..|++......... + ++.++..+.+.+++++. +|+
T Consensus 176 ~L~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~-~--------~~~~~~~~~~~~~l~~~~~~~ 245 (342)
T PRK10014 176 HLIRNGHQ-RIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLEC-T--------SSQKQAAEAITALLRHNPTIS 245 (342)
T ss_pred HHHHCCCC-EEEEEcCCcccccHHHHHHHHHHHHHHcCCCCCcceEecC-C--------CChHHHHHHHHHHHcCCCCCC
Confidence 44566765 3344432222223456888889999988875322111111 1 12234456667777654 578
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 246 ai~~~ 250 (342)
T PRK10014 246 AVVCY 250 (342)
T ss_pred EEEEC
Confidence 88876
No 65
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=52.93 E-value=1.1e+02 Score=25.61 Aligned_cols=100 Identities=17% Similarity=0.184 Sum_probs=50.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd 140 (243)
.++.+.|++ .+++++..........|.+-++++++..|++.... .....+ ++.++..+.+.+++++. |+
T Consensus 109 ~~l~~~g~~-~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~l~~~-~~ 177 (265)
T cd06299 109 SLLVALGHK-KIGYISGPQDTSTGRERLEAFRQACASLGLEVNED-LVVLGG--------YSQESGYAGATKLLDQG-AT 177 (265)
T ss_pred HHHHHcCCC-cEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChH-hEEecC--------cchHHHHHHHHHHHcCC-CC
Confidence 344456643 33444322223345678888888888888632111 111111 22233445566666554 99
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
.|++.+ . ..+.++..++++.+ +.++.++-..
T Consensus 178 av~~~~--d--------~~a~gv~~al~~~g~~vp~dv~v~g~d 211 (265)
T cd06299 178 AIIAGD--S--------MMTIGAIRAIHDAGLVIGEDISLIGFD 211 (265)
T ss_pred EEEEcC--c--------HHHHHHHHHHHHhCCCCCcceeEEEeC
Confidence 999873 1 13445555555433 2355555443
No 66
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=52.24 E-value=31 Score=33.43 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=28.4
Q ss_pred cEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEEE
Q 026131 41 NVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILCM 75 (243)
Q Consensus 41 ~vL~v~aHPD-DE~l~~Ggti~~~~~~G~~V~vv~l 75 (243)
+||++.|++. --.+++......|+++|++|+++.-
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p 57 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKP 57 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 5898977653 3567889999999999999999854
No 67
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=52.11 E-value=1.6e+02 Score=25.64 Aligned_cols=74 Identities=11% Similarity=0.110 Sum_probs=41.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.++|++ .+.+++..........|.+-++++++-.|++........ .+ ++.++..+.+.++++.. +|+
T Consensus 168 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~~l~~~~~~~ 237 (327)
T PRK10423 168 YLIDKGYT-RIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVT-GD--------FEFNGGFDAMQQLLALPLRPQ 237 (327)
T ss_pred HHHHcCCC-eEEEEeCCccccchHHHHHHHHHHHHHcCCCCCcceEEe-CC--------CChHHHHHHHHHHhcCCCCCC
Confidence 45567865 334444322223456788889999999887422111111 11 23334455666777543 589
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 238 ai~~~ 242 (327)
T PRK10423 238 AVFTG 242 (327)
T ss_pred EEEEc
Confidence 99886
No 68
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=52.04 E-value=1.5e+02 Score=26.19 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=48.4
Q ss_pred EEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCC--CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNAD--GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~--~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
.++.+.-||.-- +.+.+.++.++ |.++.+++ | |... ..+..-..+. +... ..+ .+.... ++..
T Consensus 3 ~~~~gtr~~~~~--~~pl~~~l~~~~~~~~~~~~-t-g~h~~~~~~~~~~~~~------~~~~-~~~-~l~~~~--~~~~ 68 (363)
T cd03786 3 LVVTGTRPEYIK--LAPLIRALKKDPGFELVLVV-T-GQHYDMEMGVTFFEIL------FIIK-PDY-DLLLGS--DSQS 68 (363)
T ss_pred EEEEecCHHHHH--HHHHHHHHhcCCCCCEEEEE-e-CCCCChhhhHHHHHhh------CCCC-CCE-EEecCC--CCCC
Confidence 356677787776 58999999886 66665443 3 4321 1222222221 2221 122 333221 1111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.....-.+...+.+.+++.+||+|+++
T Consensus 69 ~~~~~~~~~~~l~~~l~~~~pDvV~~~ 95 (363)
T cd03786 69 LGAQTAGLLIGLEAVLLEEKPDLVLVL 95 (363)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 100122456778888889999999997
No 69
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=51.61 E-value=38 Score=26.02 Aligned_cols=21 Identities=5% Similarity=0.050 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhcCCCEEEee
Q 026131 125 SLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.....+.+.+++.+||+|.++
T Consensus 67 ~~~~~~~~~i~~~~~DiVh~~ 87 (177)
T PF13439_consen 67 FFMRRLRRLIKKEKPDIVHIH 87 (177)
T ss_dssp HHHHHHHHHHHHHT-SEEECC
T ss_pred HHHHHHHHHHHHcCCCeEEec
Confidence 446778888999999999655
No 70
>PTZ00063 histone deacetylase; Provisional
Probab=51.17 E-value=25 Score=33.60 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
+...|..++++++||+|+.. -|.|.|.+
T Consensus 238 f~~ii~~~i~~f~Pd~Ivvq--aG~D~~~~ 265 (436)
T PTZ00063 238 FKPVISKCVEVYRPGAIVLQ--CGADSLTG 265 (436)
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccccCC
Confidence 34456678899999999987 67776643
No 71
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=51.07 E-value=1.8e+02 Score=26.46 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=48.4
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
.+++++-+++. .. =.|.+..+-|.+|.++.+-++ + .+.+..+|+ ++++.++.|. . .
T Consensus 6 ~i~V~~e~~~~-~~---Ell~~A~~l~~~v~~vv~g~~-----------~-~~~l~~~Ga--d~V~~~~~~~-~-~---- 61 (312)
T PRK11916 6 SVWVFSDNPER-YA---ELFGGAQQWGQQVYAIVQNTD-----------Q-AQAVMPYGP--KCIYVLEQND-A-L---- 61 (312)
T ss_pred eEEEEEecCCc-HH---HHHHHHHHcCCcEEEEEEChh-----------H-HHHHHhcCC--CEEEEeCCcc-c-c----
Confidence 47777774333 22 222222223556666554421 1 112245698 6888888762 1 1
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEee
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...+...+.+.+++++.+|++|+.+
T Consensus 62 ~~~e~~~~al~~~i~~~~P~~vL~~ 86 (312)
T PRK11916 62 QRTENYAESIAALLKDKHPAMLLLA 86 (312)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEC
Confidence 1356778889999999999999987
No 72
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=50.75 E-value=1.2e+02 Score=27.79 Aligned_cols=75 Identities=13% Similarity=0.182 Sum_probs=49.2
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-ccCChHHHHHHHHHHHHhc
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~-~~~~~~~l~~~l~~~i~~~ 137 (243)
|.-+++++|... +.+-.+-.|..+-+.-+|+ ..+..++.|+.+|... +.|+.+.++.+-.+.|++.
T Consensus 24 I~PlFV~eg~~~~~~I~sMPG~~r~s~d~l~~~~~~~~~~Gi--~~v~LFgv~~~Kd~~gs~A~~~~g~v~~air~iK~~ 101 (314)
T cd00384 24 IYPLFVVEGIDEKEEISSMPGVYRLSVDSLVEEAEELADLGI--RAVILFGIPEHKDEIGSEAYDPDGIVQRAIRAIKEA 101 (314)
T ss_pred eeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCcccccCCCChHHHHHHHHHHh
Confidence 566788887542 1234444555556667999 5788888886655322 2466677777777777777
Q ss_pred CCCEEEeeC
Q 026131 138 SIDLIITFD 146 (243)
Q Consensus 138 ~Pd~V~t~d 146 (243)
-||+++..|
T Consensus 102 ~p~l~vi~D 110 (314)
T cd00384 102 VPELVVITD 110 (314)
T ss_pred CCCcEEEEe
Confidence 799877554
No 73
>PTZ00346 histone deacetylase; Provisional
Probab=50.65 E-value=28 Score=33.13 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
.+.+.|..++++++||+|+.. .|.|.|.+
T Consensus 255 ~f~~ii~p~l~~F~PdlIvvs--aG~Da~~~ 283 (429)
T PTZ00346 255 LFEHALHSIVRRYSPDAIVLQ--CGADSLAG 283 (429)
T ss_pred HHHHHHHHHHHhcCCCEEEEE--CCccCCCC
Confidence 344456678899999999987 67776643
No 74
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=50.41 E-value=1.4e+02 Score=28.79 Aligned_cols=93 Identities=13% Similarity=0.195 Sum_probs=49.3
Q ss_pred CcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEE---ccCCCCCC
Q 026131 40 KNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKV---LDLVDFQD 115 (243)
Q Consensus 40 ~~vL~v~aHPD-DE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~---l~~pd~~d 115 (243)
.++.+|..-|. -=+.+|--.+...+++|.+|.++.+... ..++.+-++.+|.+.++... +.+-+..
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~---------~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~- 342 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEES---------RAQLIRNARSWGIDLEKMEEKGLLKIICAR- 342 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC---------HHHHHHHHHHcCCChHHHhhcCCceeecCC-
Confidence 44555554443 2333444444555577888877765432 23444455678875332211 1111110
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
+ .....++....+.+.+.+.+|+.|+.
T Consensus 343 -~-~~~~~~~~~~~i~~~i~~~~~~~vVI 369 (509)
T PRK09302 343 -P-ESYGLEDHLIIIKREIEEFKPSRVAI 369 (509)
T ss_pred -c-ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1 11134567788888899999997664
No 75
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=50.14 E-value=1.3e+02 Score=25.12 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=45.5
Q ss_pred CchhhhcchHHHHHHHH-hCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHH
Q 026131 48 HPDDESMFFSPTINYLT-SRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKS 125 (243)
Q Consensus 48 HPDDE~l~~Ggti~~~~-~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~ 125 (243)
.+|+.. +|-.+.++. ++|++ .+++++.... ......|.+.++++++..|++........ .+ ++.+.
T Consensus 97 ~~d~~~--~~~~~~~~l~~~g~~-~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~-~~--------~~~~~ 164 (268)
T cd06298 97 NIDYKK--AAFEATELLIKNGHK-KIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFE-GD--------YTYES 164 (268)
T ss_pred EECcHH--HHHHHHHHHHHcCCc-eEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEe-CC--------CChhH
Confidence 345554 344444443 45643 3444443322 23457788889999998887321111111 11 22234
Q ss_pred HHHHHHHHHHhcCCCEEEee
Q 026131 126 LAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+.+.+++++..|+.|++.
T Consensus 165 ~~~~~~~~l~~~~~~ai~~~ 184 (268)
T cd06298 165 GYELAEELLEDGKPTAAFVT 184 (268)
T ss_pred HHHHHHHHhcCCCCCEEEEc
Confidence 44556666665448999886
No 76
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=50.00 E-value=1.6e+02 Score=25.11 Aligned_cols=79 Identities=9% Similarity=-0.035 Sum_probs=43.3
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHH
Q 026131 56 FSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 56 ~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~ 135 (243)
+.-....+.++|++= +.+++..........|.+..+++++..|++.. ...... + ++.++..+.+.++++
T Consensus 106 ~~~a~~~L~~~G~~~-I~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~-~~~~~~-~--------~~~~~~~~~~~~~l~ 174 (269)
T cd06287 106 ARMLLEHLRAQGARQ-IALIVGSARRNSYLEAEAAYRAFAAEHGMPPV-VLRVDE-A--------GGEEAGYAACAQLLA 174 (269)
T ss_pred HHHHHHHHHHcCCCc-EEEEeCCcccccHHHHHHHHHHHHHHcCCCcc-eeEecC-C--------CChHHHHHHHHHHHh
Confidence 334445566678752 23333222223346688889999999998532 211110 0 122334456666666
Q ss_pred hc-CCCEEEee
Q 026131 136 NC-SIDLIITF 145 (243)
Q Consensus 136 ~~-~Pd~V~t~ 145 (243)
+. +||.|++.
T Consensus 175 ~~~~~~ai~~~ 185 (269)
T cd06287 175 QHPDLDALCVP 185 (269)
T ss_pred CCCCCCEEEEc
Confidence 53 68999987
No 77
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=49.57 E-value=81 Score=24.86 Aligned_cols=60 Identities=17% Similarity=0.192 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCCCCcEEEccC-CCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 90 ELHRACAVLKIPLEQVKVLDL-VDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~~-pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
-+.+.++.+|+ ++..... +| +.+++.+.+.+.++ +.|+|+|. |+.+..+.-.+.+++.++
T Consensus 31 ~l~~~l~~~G~---~v~~~~~v~D---------d~~~i~~~l~~~~~--~~DliItt---GG~g~g~~D~t~~ai~~~ 91 (144)
T TIGR00177 31 LLAALLEEAGF---NVSRLGIVPD---------DPEEIREILRKAVD--EADVVLTT---GGTGVGPRDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHCCC---eEEEEeecCC---------CHHHHHHHHHHHHh--CCCEEEEC---CCCCCCCCccHHHHHHHh
Confidence 34555667888 3444432 22 33567777777665 79999996 555665555556666554
No 78
>PRK09526 lacI lac repressor; Reviewed
Probab=48.74 E-value=1.9e+02 Score=25.42 Aligned_cols=73 Identities=12% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~P 139 (243)
..+.+.|++ .+.+++..........|.+..+++++..|++...+ +.+ + |+.+...+.+.+++++. +|
T Consensus 174 ~~L~~~G~~-~I~~l~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~-~~~--~--------~~~~~~~~~~~~~l~~~~~~ 241 (342)
T PRK09526 174 EHLVELGHQ-RIALLAGPESSVSARLRLAGWLEYLTDYQLQPIAV-REG--D--------WSAMSGYQQTLQMLREGPVP 241 (342)
T ss_pred HHHHHCCCC-eEEEEeCCCccccHHHHHHHHHHHHHHcCCCcceE-EeC--C--------CchHHHHHHHHHHhcCCCCC
Confidence 345566765 34444432222345678888999999999842111 111 1 23334455666777643 58
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
+.||+.
T Consensus 242 ~ai~~~ 247 (342)
T PRK09526 242 SAILVA 247 (342)
T ss_pred cEEEEc
Confidence 999886
No 79
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=48.34 E-value=1.7e+02 Score=25.89 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=41.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~P 139 (243)
..+.+.|++- +.++...........|.+-.+++++..|++........ .+ ++.+...+.+.+++++ .+|
T Consensus 169 ~~L~~~G~~~-I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~-~~--------~~~~~~~~~~~~~l~~~~~~ 238 (346)
T PRK10401 169 RMLLNNGHQR-IGYLSSSHGIEDDAMRRAGWMSALKEQGIIPPESWIGT-GT--------PDMQGGEAAMVELLGRNLQL 238 (346)
T ss_pred HHHHHCCCCe-EEEEeCCCcCcchHHHHHHHHHHHHHcCCCCChhheec-CC--------CChHHHHHHHHHHHcCCCCC
Confidence 3456678653 33343222223456788889999999998432211111 01 1223344556666654 368
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
+.||+.
T Consensus 239 ~ai~~~ 244 (346)
T PRK10401 239 TAVFAY 244 (346)
T ss_pred cEEEEC
Confidence 999986
No 80
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=48.33 E-value=1.1e+02 Score=27.47 Aligned_cols=88 Identities=11% Similarity=0.217 Sum_probs=49.3
Q ss_pred EEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccC
Q 026131 43 LLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLW 121 (243)
Q Consensus 43 L~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~ 121 (243)
++++.-|+ ...+.+.+..+.++ +.++. +++|.... .......+.+|++. .+ .+...+...++. .
T Consensus 5 ~~~gtr~~--~~~~~p~~~~l~~~~~~~~~-~~~tg~h~--------~~~~~~~~~~~i~~-~~-~~~~~~~~~~~~--~ 69 (365)
T TIGR00236 5 IVLGTRPE--AIKMAPLIRALKKYPEIDSY-VIVTAQHR--------EMLDQVLDLFHLPP-DY-DLNIMSPGQTLG--E 69 (365)
T ss_pred EEEecCHH--HHHHHHHHHHHhhCCCCCEE-EEEeCCCH--------HHHHHHHHhcCCCC-Ce-eeecCCCCCCHH--H
Confidence 44555554 34578999998875 44444 44553321 22333444589853 22 232211111111 1
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
........+.+++++.+||+|+++
T Consensus 70 ~~~~~~~~l~~~l~~~~pDiv~~~ 93 (365)
T TIGR00236 70 ITSNMLEGLEELLLEEKPDIVLVQ 93 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Confidence 223556788999999999999997
No 81
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=48.19 E-value=19 Score=29.07 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
-..+.+.++|++.+||+|++..|
T Consensus 76 ~~~~~l~~~l~~~~PD~IIsThp 98 (169)
T PF06925_consen 76 LFARRLIRLLREFQPDLIISTHP 98 (169)
T ss_pred HHHHHHHHHHhhcCCCEEEECCc
Confidence 45667899999999999999744
No 82
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=47.68 E-value=1.7e+02 Score=26.65 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=48.9
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
.+++++-|.+. .. -++.+..+-|.++..+.+-++ ..+.+...|+ ++++.++.+.. .
T Consensus 6 ~v~V~aE~~~~-~~---Ell~~a~~l~~~v~av~~g~~------------~~~~~~~~Ga--d~V~~~~~~~~-----~- 61 (313)
T PRK03363 6 QVWVFSDTPSR-LP---ELMNGAQALANQINAFVLNDA------------DGAQAIQLGA--NHVWKLSGKPD-----D- 61 (313)
T ss_pred eEEEEEEeCCc-HH---HHHHHHHHhcCceEEEEECcc------------hHHHHHhcCC--CEEEEecCccc-----c-
Confidence 47788876543 22 333332233445665554421 1112345798 68888886532 1
Q ss_pred CChHHHHHHHHHHHHhcCC-CEEEee
Q 026131 121 WNHKSLAKIVEEEVVNCSI-DLIITF 145 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~P-d~V~t~ 145 (243)
...+...+.|.+++.+.+| ++|+.+
T Consensus 62 ~~~e~~~~al~~~i~~~~p~~~vl~~ 87 (313)
T PRK03363 62 RMIEDYAGVMADTIRQHGADGLVLLP 87 (313)
T ss_pred cChHHHHHHHHHHHHhhCCCcEEEEc
Confidence 3456778889999999999 788776
No 83
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=47.31 E-value=1.4e+02 Score=24.33 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=36.6
Q ss_pred HHHHHHHHcCCCCCcEEEc-cCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHh
Q 026131 90 ELHRACAVLKIPLEQVKVL-DLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLN 168 (243)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l-~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~ 168 (243)
=+.+.++.+|+. +... -.+| +.+++.+.+.+.+. +.|+|+|. |+.+....-.+.+++.+++.
T Consensus 23 ~l~~~L~~~G~~---v~~~~~v~D---------d~~~I~~~l~~~~~--~~dlVItt---GG~G~t~~D~t~ea~~~~~~ 85 (170)
T cd00885 23 FLAKELAELGIE---VYRVTVVGD---------DEDRIAEALRRASE--RADLVITT---GGLGPTHDDLTREAVAKAFG 85 (170)
T ss_pred HHHHHHHHCCCE---EEEEEEeCC---------CHHHHHHHHHHHHh--CCCEEEEC---CCCCCCCCChHHHHHHHHhC
Confidence 345567778883 3222 2223 34567777777765 68999996 44444444455666666653
No 84
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.81 E-value=1.7e+02 Score=24.30 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE
Q 026131 63 LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL 141 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~ 141 (243)
+.++|++ .+.+++..........|.+-..++++..|.+ +....+ ..|+.++..+.+.+++++. +|+.
T Consensus 110 l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~ 177 (266)
T cd06278 110 LLAKGCR-RIAFIGGPADTSTSRERERGFRDALAAAGVP---VVVEEA--------GDYSYEGGYEAARRLLASRPRPDA 177 (266)
T ss_pred HHHCCCc-eEEEEcCCCcccchHHHHHHHHHHHHHcCCC---hhhhcc--------CCCCHHHHHHHHHHHHhcCCCCCE
Confidence 3445643 3344442222234567878888888877772 111111 0134445566777888764 5898
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 178 i~~~ 181 (266)
T cd06278 178 IFCA 181 (266)
T ss_pred EEEc
Confidence 9886
No 85
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=46.73 E-value=1.7e+02 Score=25.89 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=40.8
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+.+++..........|.+-++++++..|++....... +.+ ++.+.-.+.+.+++++. +|+
T Consensus 170 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~-~~~--------~~~~~~~~~~~~~l~~~~~~~ 239 (343)
T PRK10727 170 HLIQQGHT-RIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVT-FGE--------PDESGGEQAMTELLGRGRNFT 239 (343)
T ss_pred HHHHCCCc-cEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEE-eCC--------CChhHHHHHHHHHHhCCCCCC
Confidence 56677864 22333322222345678888999999999843221111 111 22233445566777654 489
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.||+.
T Consensus 240 ai~~~ 244 (343)
T PRK10727 240 AVACY 244 (343)
T ss_pred EEEEc
Confidence 99886
No 86
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.37 E-value=27 Score=32.22 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCc
Q 026131 127 AKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (243)
...+..++++++||+|+.. .|.|.|.
T Consensus 228 ~~~v~~~~~~f~Pdlvivs--aG~D~h~ 253 (340)
T COG0123 228 EEIVLPLLEEFKPDLVIVS--AGFDAHR 253 (340)
T ss_pred HHHHHHHHHhcCCCEEEEe--cCcccCC
Confidence 3336778999999999987 6766654
No 87
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=46.32 E-value=1.4e+02 Score=25.47 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=41.8
Q ss_pred HHHHHhCCCcEEEEEEeCCCC-CC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 60 INYLTSRRHNLHILCMSNGNA-DG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~-~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
+..+.++|.+|..+..+.+.. +. ......+.+++.|+.+|+| +...+.+.. ... ..+.+...+.+..++
T Consensus 14 l~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip---~~~i~~~~~----~~~-~~~~l~~~l~~~~~~ 85 (218)
T TIGR03679 14 LYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIP---LVKIETSGE----KEK-EVEDLKGALKELKRE 85 (218)
T ss_pred HHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCC---EEEEECCCC----ChH-HHHHHHHHHHHHHHc
Confidence 344446899986554444432 11 1112335567788999994 445554321 111 223466666666555
Q ss_pred cCCCEEEee
Q 026131 137 CSIDLIITF 145 (243)
Q Consensus 137 ~~Pd~V~t~ 145 (243)
..+.|++=
T Consensus 86 -g~~~vv~G 93 (218)
T TIGR03679 86 -GVEGIVTG 93 (218)
T ss_pred -CCCEEEEC
Confidence 78887763
No 88
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.53 E-value=2.2e+02 Score=25.55 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+..+.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=.+-.
T Consensus 21 v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~~ 88 (282)
T PRK14169 21 VAKLAQQDVTPTLAVVLVGSDPASEVYVRNK--QRRAEDIGV---RSLMFRLPEA-------TTQADLLAKVAELNHDPD 88 (282)
T ss_pred HHHHHhCCCCCeEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 4455556777777777777543 33344443 478899999 5556665531 244577777777666556
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 89 V~GIlvqlPLp--~~i~~~~ 106 (282)
T PRK14169 89 VDAILVQLPLP--AGLDEQA 106 (282)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 67788774433 4665554
No 89
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=45.09 E-value=67 Score=29.82 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=33.0
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCch------HHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 60 INYLTSRRHNLHILCMSNGNADGMG------NIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~~------~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
...|.++|.+|.-++|-..+.++.. ..-..++++.|+.||+ .++.+|+.+
T Consensus 17 A~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgI---p~~v~d~~~ 72 (356)
T PF03054_consen 17 AALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGI---PHYVVDLRE 72 (356)
T ss_dssp HHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT-----EEEEETHH
T ss_pred HHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCC---CEEEEChHH
Confidence 3455689999999999998875432 2334667889999999 477888654
No 90
>PRK10125 putative glycosyl transferase; Provisional
Probab=44.68 E-value=48 Score=30.89 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=20.8
Q ss_pred cEEEEecCchhhhcchHHH-------HHHHHhCCCcEEEEEEeCC
Q 026131 41 NVLLVIAHPDDESMFFSPT-------INYLTSRRHNLHILCMSNG 78 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggt-------i~~~~~~G~~V~vv~lT~G 78 (243)
+||.|.. .++.||+ ..++.++|++|.+++.+..
T Consensus 2 kil~i~~-----~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 2 NILQFNV-----RLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred eEEEEEe-----eecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 4555544 4566665 2234468999998888743
No 91
>PRK06849 hypothetical protein; Provisional
Probab=44.42 E-value=2e+02 Score=26.35 Aligned_cols=81 Identities=16% Similarity=0.170 Sum_probs=47.3
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
.+++||++++-.- .+=+.+..+.++|++|+++.... ...+ ...+ .+ ++.+.+.-|+
T Consensus 3 ~~~~VLI~G~~~~----~~l~iar~l~~~G~~Vi~~d~~~---~~~~--------~~s~--~~--d~~~~~p~p~----- 58 (389)
T PRK06849 3 TKKTVLITGARAP----AALELARLFHNAGHTVILADSLK---YPLS--------RFSR--AV--DGFYTIPSPR----- 58 (389)
T ss_pred CCCEEEEeCCCcH----HHHHHHHHHHHCCCEEEEEeCCc---hHHH--------HHHH--hh--hheEEeCCCC-----
Confidence 4678999876522 13355666667899887663321 1111 1111 12 2334443332
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.+.+...+.|.+++++.++|+|+..
T Consensus 59 ---~d~~~~~~~L~~i~~~~~id~vIP~ 83 (389)
T PRK06849 59 ---WDPDAYIQALLSIVQRENIDLLIPT 83 (389)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 1345678889999999999998875
No 92
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=44.39 E-value=2.8e+02 Score=26.42 Aligned_cols=93 Identities=17% Similarity=0.116 Sum_probs=62.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
...+..+-+.|=.==|++..-+.|.++.+. +.++.+.++|.-. . +.+.+.+|=. ..+.++.+.
T Consensus 46 ~~~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg-----~------e~a~~~~~~~-v~h~YlP~D--- 110 (419)
T COG1519 46 KPEGPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTG-----A------ERAAALFGDS-VIHQYLPLD--- 110 (419)
T ss_pred CCCCCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccH-----H------HHHHHHcCCC-eEEEecCcC---
Confidence 444567777777778999999999999987 8888888877642 1 3466667631 234455541
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHH
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.-.+.+.++.++||+++.. ..+.-|+.+.
T Consensus 111 -----------~~~~v~rFl~~~~P~l~Ii~---EtElWPnli~ 140 (419)
T COG1519 111 -----------LPIAVRRFLRKWRPKLLIIM---ETELWPNLIN 140 (419)
T ss_pred -----------chHHHHHHHHhcCCCEEEEE---eccccHHHHH
Confidence 23446778888999998875 2345666544
No 93
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=44.33 E-value=1.9e+02 Score=24.26 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=45.5
Q ss_pred hhhhcchHHHHHHH-HhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHH
Q 026131 50 DDESMFFSPTINYL-TSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKS 125 (243)
Q Consensus 50 DDE~l~~Ggti~~~-~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~ 125 (243)
|++. +|-..+++ .+. |++ .+++++..........|.+-.+++++.. |+ ++. .... ..|+.+.
T Consensus 103 d~~~--~g~~~~~~l~~~~~g~~-~i~~l~~~~~~~~~~~R~~g~~~~l~~~~~~---~~~--~~~~------~~~~~~~ 168 (270)
T cd06308 103 DNYE--IGRQAGEYIANLLPGKG-NILEIWGLEGSSPAIERHDGFKEALSKYPKI---KIV--AQQD------GDWLKEK 168 (270)
T ss_pred CcHH--HHHHHHHHHHHHcCCCc-eEEEEECCCCCchHHHHHHHHHHHHHHCCCC---EEE--EecC------CCccHHH
Confidence 5554 34444333 332 543 4455543222234467888888898887 66 222 1111 1145555
Q ss_pred HHHHHHHHHHhc-CCCEEEee
Q 026131 126 LAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 126 l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
..+.+.+++++. +|+.|++.
T Consensus 169 ~~~~~~~~l~~~~~~~aI~~~ 189 (270)
T cd06308 169 AEEKMEELLQANPDIDLVYAH 189 (270)
T ss_pred HHHHHHHHHHhCCCCcEEEeC
Confidence 567778888764 48888886
No 94
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.02 E-value=60 Score=29.55 Aligned_cols=84 Identities=18% Similarity=0.296 Sum_probs=49.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC--CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA--DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~--~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
.|++|++.+ | +.-..|..+.++|++| +.++|..+. ++-.+.--......|..+|+| ++.-.+.
T Consensus 2 mkivF~GTp-~----fa~~~L~~L~~~~~ei-vaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ip-----v~qP~~l---- 66 (307)
T COG0223 2 MRIVFFGTP-E----FAVPSLEALIEAGHEI-VAVVTQPDKPAGRGKKLTPSPVKRLALELGIP-----VFQPEKL---- 66 (307)
T ss_pred cEEEEEcCc-h----hhHHHHHHHHhCCCce-EEEEeCCCCccCCCCcCCCChHHHHHHHcCCc-----eeccccC----
Confidence 467777776 1 3557888999999776 345565554 332222233445677778884 2221111
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+ .+.+.+++.+||++++..
T Consensus 67 ----~~~----e~~~~l~~l~~D~ivvva 87 (307)
T COG0223 67 ----NDP----EFLEELAALDPDLIVVVA 87 (307)
T ss_pred ----CcH----HHHHHHhccCCCEEEEEe
Confidence 112 345666777999999874
No 95
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=43.16 E-value=1.9e+02 Score=26.96 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCc-E------EEEEEeCCCC----C---Cch---HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 57 SPTINYLTSRRHN-L------HILCMSNGNA----D---GMG---NIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 57 Ggti~~~~~~G~~-V------~vv~lT~G~~----~---~~~---~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
...|..++..|.. | .+.+++.|+. + ..+ ..-..=+.+.++.+|+ ++...+. ..|
T Consensus 149 p~~i~~Las~Gi~~v~V~~~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~---~~~~~~~--v~D---- 219 (394)
T cd00887 149 PADIGLLASLGIAEVPVYRRPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGA---EVVDLGI--VPD---- 219 (394)
T ss_pred HHHHHHHHhCCCCEEEEecCCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCC---EEEEece--eCC----
Confidence 3667777777832 2 5667888863 1 011 1222234555777888 3444432 111
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
+.+++.+.|.+.+++ .|+|+|. |+.+..++-.+.++..++
T Consensus 220 --d~~~i~~~l~~a~~~--~Dliitt---GG~s~g~~D~~~~al~~~ 259 (394)
T cd00887 220 --DPEALREALEEALEE--ADVVITS---GGVSVGDYDFVKEVLEEL 259 (394)
T ss_pred --CHHHHHHHHHHHhhC--CCEEEEe---CCCCCCcchhHHHHHHhC
Confidence 345778888887654 9999996 445555555555555543
No 96
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=42.67 E-value=1.6e+02 Score=24.98 Aligned_cols=65 Identities=12% Similarity=0.056 Sum_probs=38.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+.|.+|.+++.+.+.. -..++. ..|+ ++..++.+.. +........+.+.+++.+||+
T Consensus 24 ~l~~~~~~v~~~~~~~~~~------~~~~~~----~~~i---~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~di 83 (365)
T cd03807 24 GLDRDRFEHVVISLTDRGE------LGEELE----EAGV---PVYCLGKRPG-------RPDPGALLRLYKLIRRLRPDV 83 (365)
T ss_pred HhhhccceEEEEecCcchh------hhHHHH----hcCC---eEEEEecccc-------cccHHHHHHHHHHHHhhCCCE
Confidence 3346789998888765421 111111 1566 4666665432 112234566778888899999
Q ss_pred EEeeC
Q 026131 142 IITFD 146 (243)
Q Consensus 142 V~t~d 146 (243)
|+.+.
T Consensus 84 v~~~~ 88 (365)
T cd03807 84 VHTWM 88 (365)
T ss_pred EEecc
Confidence 98863
No 97
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=42.47 E-value=2e+02 Score=24.75 Aligned_cols=80 Identities=13% Similarity=0.080 Sum_probs=44.0
Q ss_pred hHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 56 FSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 56 ~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
+|-... ++.++|+. .+.+++..........|.+.++++++..|++........ . .++.++..+.+.+++
T Consensus 139 ~g~~a~~~l~~~G~~-~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~l 208 (309)
T PRK11041 139 AAFEAVNYLHELGHK-RIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIAR---G------DFTFEAGAKALKQLL 208 (309)
T ss_pred HHHHHHHHHHHcCCc-eEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEe---C------CCCHHHHHHHHHHHH
Confidence 344443 34557864 344444222223456788889999998887421111111 0 123345556667777
Q ss_pred Hhc-CCCEEEee
Q 026131 135 VNC-SIDLIITF 145 (243)
Q Consensus 135 ~~~-~Pd~V~t~ 145 (243)
+.. +|+.|++.
T Consensus 209 ~~~~~~~ai~~~ 220 (309)
T PRK11041 209 DLPQPPTAVFCH 220 (309)
T ss_pred cCCCCCCEEEEc
Confidence 654 58999986
No 98
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=42.44 E-value=72 Score=26.67 Aligned_cols=84 Identities=12% Similarity=0.110 Sum_probs=46.3
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
.+++|+|.+||+=+.--..-.+....+++.+|.+.-+..--.+ .....++++ +++.. +..++.||=.--++
T Consensus 5 ~~kiLiI~aHP~~~~S~~n~~l~~~~~~~~~v~~~DL~~~~p~~~~d~~~eq~-----~l~~a---D~iV~~fPl~w~~~ 76 (184)
T PRK04930 5 PPKVLLLYAHPESQDSVANRVLLKPAQQLEHVTVHDLYAHYPDFFIDIPHEQA-----LLREH---DVIVFQHPLYTYSC 76 (184)
T ss_pred CCEEEEEECCCCcccCHHHHHHHHHHHcCCceEEEECcccCCCCCCCHHHHHH-----HHHhC---CEEEEEcCccccCC
Confidence 3789999999986632255566666676767766655443221 111222222 23334 45677777532221
Q ss_pred cccCChHHHHHHHHHHHH
Q 026131 118 DKLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~ 135 (243)
+..+..-+.++++
T Consensus 77 -----Pa~LK~wiD~V~~ 89 (184)
T PRK04930 77 -----PALLKEWLDRVLS 89 (184)
T ss_pred -----cHHHHHHHHHHHh
Confidence 2356666666664
No 99
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=42.15 E-value=1.1e+02 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCcEEEEecCchhhhcch-H-HHHHHHHhCCCcEEEEEEeCCCC
Q 026131 39 KKNVLLVIAHPDDESMFF-S-PTINYLTSRRHNLHILCMSNGNA 80 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~-G-gti~~~~~~G~~V~vv~lT~G~~ 80 (243)
.++++.|. .|-.+.+ | ..|...++.+.++.++++-|+..
T Consensus 69 ~~~Vv~i~---GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~ 109 (178)
T cd02008 69 DKKVVAVI---GDSTFFHSGILGLINAVYNKANITVVILDNRTT 109 (178)
T ss_pred CCCEEEEe---cChHHhhccHHHHHHHHHcCCCEEEEEECCcce
Confidence 34555553 3444433 2 44555566677777777777654
No 100
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.75 E-value=2.1e+02 Score=23.92 Aligned_cols=69 Identities=10% Similarity=0.040 Sum_probs=39.0
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEeeCCCCCCCCchHHHHHH
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITFDNYGVSGHCNHRDVHH 161 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (243)
....|.+...++++-.|++......+. ..|+.++..+.+.+++.+ -+|+.|++.+ . ..+.
T Consensus 128 ~~~~R~~Gf~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--d--------~~a~ 188 (265)
T cd06285 128 TARDRLAGFRAALAEAGIEVPPERIVY---------SGFDIEGGEAAAEKLLRSDSPPTAIFAVN--D--------FAAI 188 (265)
T ss_pred cHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCCHHHHHHHHHHHHcCCCCCCEEEEcC--c--------HHHH
Confidence 456788888888888887321111111 112344455666777654 3589999873 2 2444
Q ss_pred HHHHHHhhc
Q 026131 162 GIWSYLNGT 170 (243)
Q Consensus 162 av~~a~~~~ 170 (243)
.+.++++..
T Consensus 189 g~~~~l~~~ 197 (265)
T cd06285 189 GVMGAARDR 197 (265)
T ss_pred HHHHHHHHc
Confidence 566666543
No 101
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=1e+02 Score=29.50 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=45.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHH----hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLT----SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~----~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
+..++.|+-.|. +|=.=+|++.+ ++| .++++|.-+.....+. =++.||++.++++.+..-
T Consensus 92 ~Gs~iLIgGdPG---IGKSTLLLQva~~lA~~~---~vLYVsGEES~~Qikl-------RA~RL~~~~~~l~l~aEt--- 155 (456)
T COG1066 92 PGSVILIGGDPG---IGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKL-------RADRLGLPTNNLYLLAET--- 155 (456)
T ss_pred cccEEEEccCCC---CCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHH-------HHHHhCCCccceEEehhc---
Confidence 356777777764 34333444443 334 5677775444322233 356799876666555421
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
+ .+.|.+.+++.+|++++.
T Consensus 156 -------~----~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 156 -------N----LEDIIAELEQEKPDLVVI 174 (456)
T ss_pred -------C----HHHHHHHHHhcCCCEEEE
Confidence 2 345566677789998774
No 102
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=41.43 E-value=2.2e+02 Score=28.12 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=54.2
Q ss_pred HHHHHHHhCCC-cE------EEEEEeCCCC----CC---chHHH---HHHHHHHHHHcCCCCCcEEEccC-CCCCCCccc
Q 026131 58 PTINYLTSRRH-NL------HILCMSNGNA----DG---MGNIR---KDELHRACAVLKIPLEQVKVLDL-VDFQDGFDK 119 (243)
Q Consensus 58 gti~~~~~~G~-~V------~vv~lT~G~~----~~---~~~~R---~~E~~~A~~~LGv~~~~~~~l~~-pd~~d~~~~ 119 (243)
..|..|+..|. +| .+.++++|+. +. .++++ ..-+.+.++.+|+ ++..++. +|
T Consensus 161 ~~IglLas~Gi~~V~V~~rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~---~v~~~~iv~D------- 230 (546)
T PRK14497 161 EKIGLLASLGISSVKVYEKPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGY---KIVGLSLLSD------- 230 (546)
T ss_pred HHHHHHHhCCCCEEeeccCCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCC---EEEEEEEeCC-------
Confidence 56677777884 35 6788888863 11 12222 2234455777888 3444432 22
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
+.+++.+.|.+.++ +.|+|+|. |+.+..++-.+.++..+
T Consensus 231 --d~e~i~~~l~~al~--~~DlVItt---GGtS~G~~D~~~~al~~ 269 (546)
T PRK14497 231 --DKESIKNEIKRAIS--VADVLILT---GGTSAGEKDFVHQAIRE 269 (546)
T ss_pred --CHHHHHHHHHHhhh--cCCEEEEc---CCccCCCCccHHHHHhh
Confidence 34567777777765 58999995 55555555555565554
No 103
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=41.41 E-value=38 Score=24.50 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=30.0
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHH--HHHH-HHHHHHcCCCCCcEEE
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIR--KDEL-HRACAVLKIPLEQVKV 107 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R--~~E~-~~A~~~LGv~~~~~~~ 107 (243)
+.-++..|++|+ +.+.++-+. .++..+..++-+|.+.+-.....| -+.+ .+.++.+|++++++.+
T Consensus 2 rfqi~~~~~~~~-~~~~~~ylg-~~Rs~~~v~I~It~~~gRs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I 69 (82)
T PF14552_consen 2 RFQIIHEHEPDE-FIYDPTYLG-IDRSDDFVIIQITSGAGRSTEQKKALYRALAERLAEKLGIRPEDVMI 69 (82)
T ss_dssp SEEEEEEE-GGG-EEE-TTTS---TS-TT-EEEEEEECS---HHHHHHHHHHHHHHHHHHH---GGGEEE
T ss_pred eeEEEEEeCccc-EEECCccCC-CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEE
Confidence 566889997776 456665443 344566777777776432111111 1222 2234458999888754
No 104
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.27 E-value=2.4e+02 Score=25.30 Aligned_cols=84 Identities=10% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 61 NYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
..+.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=..-..
T Consensus 24 ~~l~~~g~~p~Laii~vg~~~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~lN~d~~V 91 (286)
T PRK14175 24 EALKEKGFTPKLSVILVGNDGASQSYVRSK--KKAAEKIGM---ISEIVHLEET-------ATEEEVLNELNRLNNDDSV 91 (286)
T ss_pred HHHHhcCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCCC
Confidence 344455777777777666543 33344443 478999999 5556665531 2445677777766655556
Q ss_pred CEEEeeCCCCCCCCchHHH
Q 026131 140 DLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~ 158 (243)
+=|+.+-|. ..|.|-..
T Consensus 92 ~GIivq~Pl--p~~i~~~~ 108 (286)
T PRK14175 92 SGILVQVPL--PKQVSEQK 108 (286)
T ss_pred CEEEEeCCC--CCCCCHHH
Confidence 667777443 34665554
No 105
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=41.22 E-value=4e+02 Score=27.01 Aligned_cols=57 Identities=16% Similarity=0.346 Sum_probs=34.4
Q ss_pred EEEecCchhhhcchHHHHHHHHhCC---CcEEEEEEeCCCCCCc----------hHHHHHHHHHHHHHcCC
Q 026131 43 LLVIAHPDDESMFFSPTINYLTSRR---HNLHILCMSNGNADGM----------GNIRKDELHRACAVLKI 100 (243)
Q Consensus 43 L~v~aHPDDE~l~~Ggti~~~~~~G---~~V~vv~lT~G~~~~~----------~~~R~~E~~~A~~~LGv 100 (243)
++|.+|=.|+.+ ...|+....+.. .++.++++.||+.++. ...|+.|.++.++.+|+
T Consensus 135 ViIP~yNE~~~i-v~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~~v 204 (713)
T TIGR03030 135 VFIPTYNEDLEI-VATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKLGV 204 (713)
T ss_pred EEEcCCCCCHHH-HHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHcCc
Confidence 455566444333 235666665543 2578888899875432 12256788888888887
No 106
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=41.21 E-value=2.1e+02 Score=23.79 Aligned_cols=78 Identities=13% Similarity=-0.016 Sum_probs=41.7
Q ss_pred hHHHHHHH-HhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 56 FSPTINYL-TSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 56 ~Ggti~~~-~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
+|-.++++ .+.|++ .+++++..........|.+-++++++.-|++... ... . .++.++..+.+.+++
T Consensus 103 ~g~~~~~~l~~~g~~-~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~--~~~-~--------~~~~~~~~~~~~~~l 170 (264)
T cd01574 103 GARLATEHLLELGHR-TIAHVAGPEEWLSARARLAGWRAALEAAGIAPPP--VLE-G--------DWSAESGYRAGRELL 170 (264)
T ss_pred HHHHHHHHHHHCCCC-EEEEEecCCccchHHHHHHHHHHHHHHCCCCcce--eee-c--------CCCHHHHHHHHHHHH
Confidence 34444333 345543 4555544333233456777788888776763211 110 0 123344456667777
Q ss_pred HhcCCCEEEee
Q 026131 135 VNCSIDLIITF 145 (243)
Q Consensus 135 ~~~~Pd~V~t~ 145 (243)
++..|+.|++.
T Consensus 171 ~~~~~~ai~~~ 181 (264)
T cd01574 171 REGDPTAVFAA 181 (264)
T ss_pred hCCCCcEEEEc
Confidence 66568999886
No 107
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=41.21 E-value=2e+02 Score=23.50 Aligned_cols=78 Identities=12% Similarity=0.061 Sum_probs=43.8
Q ss_pred hHHHHHHHH-hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcC-CCCCcEEEccCCCCCCCccccCChHHHHHHHHHH
Q 026131 56 FSPTINYLT-SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLK-IPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE 133 (243)
Q Consensus 56 ~Ggti~~~~-~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LG-v~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~ 133 (243)
+|..+.++. +.|.+ .++++...........|.++++++++..| . ........ .++.+...+.+.++
T Consensus 105 ~~~~~~~~l~~~g~~-~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~~~~~ 172 (264)
T cd01537 105 AGYLAGEHLAEKGHR-RIALLAGPLGSSTARERVAGFKDALKEAGPI---EIVLVQEG--------DWDAEKGYQAAEEL 172 (264)
T ss_pred HHHHHHHHHHHhcCC-cEEEEECCCCCCcHHHHHHHHHHHHHHcCCc---ChhhhccC--------CCCHHHHHHHHHHH
Confidence 345554443 45533 33333333333456788899999988887 3 12111110 12344566777787
Q ss_pred HHhcC-CCEEEee
Q 026131 134 VVNCS-IDLIITF 145 (243)
Q Consensus 134 i~~~~-Pd~V~t~ 145 (243)
+++.. ||.|++.
T Consensus 173 l~~~~~~~~i~~~ 185 (264)
T cd01537 173 LTAHPDPTAIFAA 185 (264)
T ss_pred HhcCCCCCEEEEc
Confidence 77654 8999887
No 108
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=41.12 E-value=2.4e+02 Score=24.42 Aligned_cols=81 Identities=10% Similarity=-0.074 Sum_probs=45.2
Q ss_pred HHHHHHH-HhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 57 SPTINYL-TSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 57 Ggti~~~-~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
|-.++++ .+. |.+-.+++++..........|.+.++++++..|.+ .+....... ..|+.++..+.+.+++
T Consensus 109 g~~a~~~l~~~~~~~~~I~~l~g~~~~~~~~~R~~Gf~~~l~~~g~~--~~~~~~~~~------~~~~~~~~~~~~~~~l 180 (298)
T cd06302 109 GETLMDSLAEQMGGKGEYAIFVGSLTATNQNAWIDAAKAYQKEKYYP--MLELVDRQY------GDDDADKSYQTAQELL 180 (298)
T ss_pred HHHHHHHHHHHcCCCCEEEEEeCCCCCcchHHHHHHHHHHHhhcCCC--CeEEeCccc------CCCCHHHHHHHHHHHH
Confidence 3444333 344 44344555553333334567888999999988853 233222111 1134455566777777
Q ss_pred Hhc-CCCEEEee
Q 026131 135 VNC-SIDLIITF 145 (243)
Q Consensus 135 ~~~-~Pd~V~t~ 145 (243)
++. +|+.|++.
T Consensus 181 ~~~~~~~ai~~~ 192 (298)
T cd06302 181 KAYPDLKGIIGP 192 (298)
T ss_pred HhCCCceEEEEC
Confidence 654 47888886
No 109
>PRK06988 putative formyltransferase; Provisional
Probab=40.95 E-value=1.6e+02 Score=26.59 Aligned_cols=83 Identities=17% Similarity=0.188 Sum_probs=48.3
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
+|+++++... ++-.+|..+.++|.+|..| +|..+... +........+.|...|++ ++. |+. .
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~V-vt~~d~~~-~~~~~~~v~~~A~~~gip---~~~---~~~---~-- 64 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALV-VTHEDNPT-ENIWFGSVAAVAAEHGIP---VIT---PAD---P-- 64 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEE-EcCCCCCc-cCcCCCHHHHHHHHcCCc---EEc---ccc---C--
Confidence 4677776552 3456888888889887655 66543211 111223456778888984 321 110 1
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..++ +.+.+++.+||++++..
T Consensus 65 --~~~~----~~~~l~~~~~Dliv~~~ 85 (312)
T PRK06988 65 --NDPE----LRAAVAAAAPDFIFSFY 85 (312)
T ss_pred --CCHH----HHHHHHhcCCCEEEEeh
Confidence 1122 34557888999988763
No 110
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=40.92 E-value=59 Score=18.89 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=13.6
Q ss_pred CchHHHHHHH--HHHHHHHHHHHhh
Q 026131 1 MSWLLVIVST--IVVWVASLFKILN 23 (243)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~~~~~~ 23 (243)
|.|..-+-+. ..+|+|+++-++-
T Consensus 1 M~~~~wls~a~a~~Lf~YLv~ALlR 25 (29)
T PRK14740 1 MTVLDWLSLALATGLFVYLLVALLR 25 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7785544444 3377777766543
No 111
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=40.68 E-value=1.4e+02 Score=27.44 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=48.6
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccC--CCCCCCcc-ccCChHHHHHHHHHHHH
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDL--VDFQDGFD-KLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~--pd~~d~~~-~~~~~~~l~~~l~~~i~ 135 (243)
|.-++++.|... +.+-.+-.|..+-+.-+|+ ..+..++. |+.+|..+ +.|+.+.++..-.+.|+
T Consensus 30 I~PlFV~eg~~~~~~I~smPg~~r~sid~l~~~v~~~~~~GI--~~v~lFgvi~~~~Kd~~gs~a~~~~g~v~~air~iK 107 (324)
T PF00490_consen 30 IYPLFVVEGENEKEPISSMPGVYRYSIDSLVKEVEEAVDLGI--RAVILFGVIDPSKKDEEGSEAYNPDGLVQRAIRAIK 107 (324)
T ss_dssp EEEEEEESSSSSEEEETTSTTEEEEEHHHHHHHHHHHHHTT----EEEEEEE-SCSC-BSS-GGGGSTTSHHHHHHHHHH
T ss_pred EEEEEEecCCCcceeccCCCCeeeeCHHHHHHHHHHHHHCCC--CEEEEEeeCCcccCCcchhcccCCCChHHHHHHHHH
Confidence 667788888752 1344555666667777999 57777787 66555332 34677777777777777
Q ss_pred hcCCCEEEeeC
Q 026131 136 NCSIDLIITFD 146 (243)
Q Consensus 136 ~~~Pd~V~t~d 146 (243)
+.-||+++..|
T Consensus 108 ~~~pdl~vi~D 118 (324)
T PF00490_consen 108 KAFPDLLVITD 118 (324)
T ss_dssp HHSTTSEEEEE
T ss_pred HhCCCcEEEEe
Confidence 77799877554
No 112
>PRK01215 competence damage-inducible protein A; Provisional
Probab=40.48 E-value=2e+02 Score=25.45 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=43.4
Q ss_pred EEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 72 ILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 72 vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
+.+++.|+. +.....-..-+.+.++.+|+ ++.... .+| +.+.+.+.|.+... +.|+|+|.
T Consensus 6 v~Ii~~GdEll~G~i~dtn~~~l~~~L~~~G~---~v~~~~~v~D---------d~~~I~~~l~~a~~--~~DlVItt-- 69 (264)
T PRK01215 6 AWIITIGNELLIGRTVNTNASWIARRLTYLGY---TVRRITVVMD---------DIEEIVSAFREAID--RADVVVST-- 69 (264)
T ss_pred EEEEEEChhccCCeEEEhhHHHHHHHHHHCCC---eEEEEEEeCC---------CHHHHHHHHHHHhc--CCCEEEEe--
Confidence 344455543 22223333445566777998 343332 233 34567788887766 46999997
Q ss_pred CCCCCCchHHHHHHHHHHHH
Q 026131 148 YGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 148 ~g~d~H~DH~~~~~av~~a~ 167 (243)
|+-+-...-.+.+++.+++
T Consensus 70 -GG~g~t~dD~t~eaia~~~ 88 (264)
T PRK01215 70 -GGLGPTYDDKTNEGFAKAL 88 (264)
T ss_pred -CCCcCChhhhHHHHHHHHh
Confidence 4444444445555555553
No 113
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=40.18 E-value=2.5e+02 Score=25.75 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=47.2
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-ccCChHHHHHHHHHHHHhc
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~-~~~~~~~l~~~l~~~i~~~ 137 (243)
|+-+++++|... +.+-.+-.|..+-+.-+|+ ..+..++.|+.+|... +.|+.+-++.+-.+.|++.
T Consensus 32 I~PiFV~eg~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi--~av~LFgv~~~Kd~~gs~A~~~~g~v~rair~iK~~ 109 (323)
T PRK09283 32 IYPLFVVEGENEREEIPSMPGVYRLSIDLLVKEAEEAVELGI--PAVALFGVPELKDEDGSEAYNPDGLVQRAIRAIKKA 109 (323)
T ss_pred eeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEeCcCCCCCcccccccCCCCHHHHHHHHHHHh
Confidence 566788887542 1233444555556667899 5788888877665432 2356666666666666665
Q ss_pred CCCEEEeeC
Q 026131 138 SIDLIITFD 146 (243)
Q Consensus 138 ~Pd~V~t~d 146 (243)
-||+++..|
T Consensus 110 ~p~l~vi~D 118 (323)
T PRK09283 110 FPELGVITD 118 (323)
T ss_pred CCCcEEEEe
Confidence 699877554
No 114
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=39.84 E-value=83 Score=28.83 Aligned_cols=59 Identities=24% Similarity=0.340 Sum_probs=38.3
Q ss_pred HHHHHHhCCCcEEEE-EEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 59 TINYLTSRRHNLHIL-CMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 59 ti~~~~~~G~~V~vv-~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
|...|.++|.+|.++ .+++|..+ .+.+.| + +.+..|..| .+.|.+++++.
T Consensus 16 tv~~Ll~~G~~vvV~DNL~~g~~~---~v~~~~---------~---~f~~gDi~D--------------~~~L~~vf~~~ 66 (329)
T COG1087 16 TVRQLLKTGHEVVVLDNLSNGHKI---ALLKLQ---------F---KFYEGDLLD--------------RALLTAVFEEN 66 (329)
T ss_pred HHHHHHHCCCeEEEEecCCCCCHH---Hhhhcc---------C---ceEEecccc--------------HHHHHHHHHhc
Confidence 567778899998777 57777532 111111 2 344444332 34578889999
Q ss_pred CCCEEEeeC
Q 026131 138 SIDLIITFD 146 (243)
Q Consensus 138 ~Pd~V~t~d 146 (243)
+||.|+-|.
T Consensus 67 ~idaViHFA 75 (329)
T COG1087 67 KIDAVVHFA 75 (329)
T ss_pred CCCEEEECc
Confidence 999999774
No 115
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.78 E-value=2.7e+02 Score=25.00 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=49.9
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=++.+
T Consensus 23 v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~~ 90 (284)
T PRK14190 23 VVKLKEQGIVPGLAVILVGDDPASHSYVRGK--KKAAEKVGI---YSELYEFPAD-------ITEEELLALIDRLNADPR 90 (284)
T ss_pred HHHHHhCCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 3444455776666666656542 33344433 578999999 5666666541 144567777776665555
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.+=|+.+-|.. .|.|-..
T Consensus 91 V~GIlvq~PLp--~~i~~~~ 108 (284)
T PRK14190 91 INGILVQLPLP--KHIDEKA 108 (284)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 56677774433 4555443
No 116
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=39.70 E-value=1.3e+02 Score=28.21 Aligned_cols=67 Identities=18% Similarity=0.128 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 026131 71 HILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGV 150 (243)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~ 150 (243)
.++++|+..-...+ --++..+.++..|+ ++.+++. .+ + -+..+.++...+.+++++||.|+.. .|+
T Consensus 31 r~liVTd~~~~~~g--~~~~v~~~L~~~~i---~~~if~~--v~--p---~P~~~~v~~~~~~~~~~~~D~iIal--GGG 96 (377)
T COG1454 31 RALIVTDRGLAKLG--LLDKVLDSLDAAGI---EYEVFDE--VE--P---EPTIETVEAGAEVAREFGPDTIIAL--GGG 96 (377)
T ss_pred ceEEEECCccccch--hHHHHHHHHHhcCC---eEEEecC--CC--C---CCCHHHHHHHHHHHHhcCCCEEEEe--CCc
Confidence 34666765422221 23455566666676 3444442 21 1 1445677888889999999999998 554
Q ss_pred C
Q 026131 151 S 151 (243)
Q Consensus 151 d 151 (243)
+
T Consensus 97 S 97 (377)
T COG1454 97 S 97 (377)
T ss_pred c
Confidence 3
No 117
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=39.39 E-value=2.1e+02 Score=23.35 Aligned_cols=84 Identities=13% Similarity=0.060 Sum_probs=46.2
Q ss_pred hhhhcchHHHHHHH-HhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHH
Q 026131 50 DDESMFFSPTINYL-TSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAK 128 (243)
Q Consensus 50 DDE~l~~Ggti~~~-~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~ 128 (243)
|++. +|-++.++ .++|.+ .+++++..........|.+.++++.+..|.+........ . .|+.+....
T Consensus 99 d~~~--~g~~~~~~l~~~g~~-~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~ 166 (264)
T cd06267 99 DNRA--GAYLAVEHLIELGHR-RIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVE-G--------DFSEESGYE 166 (264)
T ss_pred ccHH--HHHHHHHHHHHCCCc-eEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEe-c--------ccchhhHHH
Confidence 4443 34555444 345643 344454433334567788888888887775222111111 0 123345566
Q ss_pred HHHHHHHhcC-CCEEEee
Q 026131 129 IVEEEVVNCS-IDLIITF 145 (243)
Q Consensus 129 ~l~~~i~~~~-Pd~V~t~ 145 (243)
.+.+++++.. ||.|++.
T Consensus 167 ~~~~~l~~~~~~~~i~~~ 184 (264)
T cd06267 167 AARELLASGERPTAIFAA 184 (264)
T ss_pred HHHHHHhcCCCCcEEEEc
Confidence 7777777654 8888875
No 118
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=39.25 E-value=85 Score=29.20 Aligned_cols=50 Identities=20% Similarity=0.202 Sum_probs=36.2
Q ss_pred HHHHHhCCCcEEEEEEeCCCC-CC---chHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 60 INYLTSRRHNLHILCMSNGNA-DG---MGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~-~~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
...+.++|++|.-++|-+.+. ++ -...=.+.++++|+.||+ .++.+||.+
T Consensus 20 A~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGI---p~~~vdf~~ 73 (356)
T COG0482 20 AYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGI---PLYVVDFEK 73 (356)
T ss_pred HHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCC---ceEEEchHH
Confidence 445667899999999988773 22 233445678899999999 467777653
No 119
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=39.17 E-value=48 Score=28.37 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
++.++.....++|++..||+|++|+-.+
T Consensus 70 ~E~eLL~~f~~~i~~~DPDii~GyN~~~ 97 (230)
T cd05777 70 TEEELLLAWRDFVQEVDPDIITGYNICN 97 (230)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 4568999999999999999999995444
No 120
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=39.16 E-value=91 Score=28.04 Aligned_cols=65 Identities=12% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCC-CCcEEEccCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIP-LEQVKVLDLVDF 113 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~-~~~~~~l~~pd~ 113 (243)
..+++++|=|+- |-|+++..++++ |++|.-++++. .-.++.++-.+..|.+ ..++...|++|.
T Consensus 70 L~~G~~lLDiGC-------GWG~l~~~aA~~y~v~V~GvTlS~--------~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 70 LKPGMTLLDIGC-------GWGGLAIYAAEEYGVTVVGVTLSE--------EQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred CCCCCEEEEeCC-------ChhHHHHHHHHHcCCEEEEeeCCH--------HHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 567788884331 346777777765 77777777664 2334455555667764 335566788876
Q ss_pred CC
Q 026131 114 QD 115 (243)
Q Consensus 114 ~d 115 (243)
.+
T Consensus 135 ~e 136 (283)
T COG2230 135 EE 136 (283)
T ss_pred cc
Confidence 54
No 121
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=38.87 E-value=94 Score=24.93 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
..+.-.+|....++.+|+ +++....|.-+.++....--..++.+.+++.+.+.+.++.-+| .|
T Consensus 55 vv~~av~eI~~~a~kv~~--~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~raP--FG 117 (138)
T PF08915_consen 55 VVEKAVEEIKWVAKKVKA--KRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFEVYRAP--FG 117 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-EEEE----TT
T ss_pred HHHHHHHHHHHHHHhcCC--CEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCeEEEeC--Cc
Confidence 344556889999999999 6787777754433221100113667777777878888888777 66
No 122
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.80 E-value=2.7e+02 Score=24.99 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=52.1
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+..+.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=..-+
T Consensus 22 i~~l~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~~ 89 (284)
T PRK14170 22 VAELVKEGKKPGLAVVLVGDNQASRTYVRNK--QKRTEEAGM---KSVLIELPEN-------VTEEKLLSVVEELNEDKT 89 (284)
T ss_pred HHHHHhCCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 3445556777777777777543 23344443 478899999 4555565531 244567777777766666
Q ss_pred CCEEEeeCCCCCCCCchHHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRDV 159 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~ 159 (243)
.|=|+.+-|. ..|.|-..+
T Consensus 90 V~GIivqlPl--P~~i~~~~i 108 (284)
T PRK14170 90 IHGILVQLPL--PEHISEEKV 108 (284)
T ss_pred CCeEEEecCC--CCCCCHHHH
Confidence 6767777443 356665543
No 123
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=38.47 E-value=99 Score=22.60 Aligned_cols=56 Identities=21% Similarity=0.044 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCc-cccCChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGF-DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~-~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
+....+.||+ +...++ .+|..-.. ...-+.++..+.+.+.+++.+.|+.+.+|+.+
T Consensus 37 ~~~ll~~lg~---~~~~~n~~~d~~f~~~~~p~p~~~~l~~~~~~v~~~~ad~g~~~DgDa 94 (104)
T PF02879_consen 37 LPRLLERLGC---DVIELNCDPDPDFPNQHAPNPEEESLQRLIKIVRESGADLGIAFDGDA 94 (104)
T ss_dssp HHHHHHHTTC---EEEEESSS-STTGTTTSTSSTSTTTTHHHHHHHHHSTTSEEEEE-TTS
T ss_pred HHHHHHHcCC---cEEEEecccccccccccccccccchhHHHHHHhhccCceEEEEECCcC
Confidence 3456777998 344444 34421111 11112235678888899999999999998654
No 124
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=38.32 E-value=2.3e+02 Score=23.35 Aligned_cols=84 Identities=11% Similarity=0.121 Sum_probs=46.0
Q ss_pred chhhhcchHHHHHHHH-hC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcC-CCCCcEEEccCCCCCCCccccCChH
Q 026131 49 PDDESMFFSPTINYLT-SR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLK-IPLEQVKVLDLVDFQDGFDKLWNHK 124 (243)
Q Consensus 49 PDDE~l~~Ggti~~~~-~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LG-v~~~~~~~l~~pd~~d~~~~~~~~~ 124 (243)
+|+.. .|-.++++. +. |+ -.+.+++..........|.+-++++++..| + ++......+ ++.+
T Consensus 101 ~d~~~--~~~~~~~~l~~~~~g~-~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~---~~~~~~~~~--------~~~~ 166 (267)
T cd01536 101 TDNYE--AGRLAGEYLAKLLGGK-GKVAIIEGPPGSSNAQERVKGFRDALKEYPDI---EIVAVQDGN--------WDRE 166 (267)
T ss_pred cCHHH--HHHHHHHHHHHHhCCC-ceEEEEEcccccchHHHHHHHHHHHHHhCCCc---EEEEEecCC--------CcHH
Confidence 35554 345555544 34 44 344555533322455678888889998885 5 232222111 2334
Q ss_pred HHHHHHHHHHHhc-CCCEEEeeC
Q 026131 125 SLAKIVEEEVVNC-SIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~-~Pd~V~t~d 146 (243)
+..+.+.+++++. +|+.|++.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~i~~~~ 189 (267)
T cd01536 167 KALQAMEDLLQANPDIDAIFAAN 189 (267)
T ss_pred HHHHHHHHHHHhCCCccEEEEec
Confidence 4566677777654 378888863
No 125
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics]
Probab=38.26 E-value=59 Score=30.58 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYGVS 151 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g~d 151 (243)
-....+..+++.++|+.|+.. -|.|
T Consensus 239 if~pIi~~v~e~f~P~AiVLQ--CGaD 263 (425)
T KOG1342|consen 239 IFKPIISKVMERFQPEAIVLQ--CGAD 263 (425)
T ss_pred HHHHHHHHHHHHhCCceEEEE--cCCc
Confidence 344567788999999999887 5543
No 126
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=38.13 E-value=2.4e+02 Score=23.55 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=39.6
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--CCCEEEe
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC--SIDLIIT 144 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~--~Pd~V~t 144 (243)
|.. .+++++..........|.+.++++++..|.. +....... ..++.++..+.+.+++++. +|+.|++
T Consensus 124 g~~-~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~ai~~ 193 (275)
T cd06317 124 GKG-QIVVIAGQPGNGTAIERQKGFEDELAEVCPG---VEVLDTQP------ADWDREKAQVAMEALITKFGDDIDGVYA 193 (275)
T ss_pred CCc-eEEEEecCCCCchHHHHHHHHHHHHHhhCCC---CEEEeccC------CCCCHHHHHHHHHHHHHhCCCCccEEEE
Confidence 543 4455543222335567888899999888742 22222111 0134445566677777763 5788887
Q ss_pred e
Q 026131 145 F 145 (243)
Q Consensus 145 ~ 145 (243)
.
T Consensus 194 ~ 194 (275)
T cd06317 194 G 194 (275)
T ss_pred C
Confidence 6
No 127
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.13 E-value=2.4e+02 Score=23.60 Aligned_cols=73 Identities=11% Similarity=-0.066 Sum_probs=35.9
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.++|++ .+++++..........|.+...++++..|++......... + ++.+...+.+.+++++. |+.
T Consensus 116 ~l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~-~--------~~~~~~~~~~~~~l~~~-~~a 184 (273)
T cd06292 116 HLVALGHR-RIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARG-M--------FSVEGGQAAAVELLGSG-PTA 184 (273)
T ss_pred HHHHCCCc-eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeC-C--------CCHHHHHHHHHHHhcCC-CCE
Confidence 33445643 2333332211223456777888888888763222111110 1 12223344455555543 999
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 185 i~~~ 188 (273)
T cd06292 185 IVAA 188 (273)
T ss_pred EEEc
Confidence 8886
No 128
>COG1015 DeoB Phosphopentomutase [Carbohydrate transport and metabolism]
Probab=38.10 E-value=1.4e+02 Score=28.02 Aligned_cols=98 Identities=19% Similarity=0.271 Sum_probs=52.8
Q ss_pred HHHHHhCCCcEEEEE----EeCCCC--CCc-hHHHHHHHHHHHHHcCC-CCCcEEEccCCCCCCCccc----cC---ChH
Q 026131 60 INYLTSRRHNLHILC----MSNGNA--DGM-GNIRKDELHRACAVLKI-PLEQVKVLDLVDFQDGFDK----LW---NHK 124 (243)
Q Consensus 60 i~~~~~~G~~V~vv~----lT~G~~--~~~-~~~R~~E~~~A~~~LGv-~~~~~~~l~~pd~~d~~~~----~~---~~~ 124 (243)
+.+|.++|.+|+.|= +.+|.. ... ..--..-+....+.+.- .-+.+.|.|+-|+....+- .+ ..+
T Consensus 230 l~~L~e~g~~vi~IGKI~DI~~~~Git~~~~~~~n~~~~d~tl~~~~~~~~~~~vFtNlVdfD~~yGHRrDv~gYa~aLe 309 (397)
T COG1015 230 LDKLKEAGRPVIAIGKIADIYAGQGITEKVKAVSNMDGMDVTLEEMKTAEFNGLVFTNLVDFDSLYGHRRDVAGYAAALE 309 (397)
T ss_pred HHHHHHcCCceEEEeeHHhhhccccccccccCCCcHHHHHHHHHHHhcCCCCcEEEEeeeecccccccccchHHHHHHHH
Confidence 567888898887662 112221 111 00011223334444442 2244788887775211110 01 134
Q ss_pred HHHHHHHHHHHhcCCC--EEEeeCCCCCC---CCchHHH
Q 026131 125 SLAKIVEEEVVNCSID--LIITFDNYGVS---GHCNHRD 158 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd--~V~t~d~~g~d---~H~DH~~ 158 (243)
+.=++|.++++..++| +|+|-| +|.| .|.||..
T Consensus 310 ~FD~rL~e~~~~l~edDlLiiTAD-HGnDPT~~gTdHTR 347 (397)
T COG1015 310 EFDRRLPELIENLREDDLLIITAD-HGNDPTWGGTDHTR 347 (397)
T ss_pred HHHHHHHHHHHhcCCCCEEEEecC-CCCCCCCCCCCccc
Confidence 5667799999999986 466766 7765 6889853
No 129
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.08 E-value=1.9e+02 Score=26.73 Aligned_cols=85 Identities=19% Similarity=0.234 Sum_probs=54.7
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
++++=..||=-.-+| -++|..+.++|++|.+.|--.| +..+-.+.+|++ +...+- +|..+.
T Consensus 2 kVwiDI~n~~hvhfF-k~lI~elekkG~ev~iT~rd~~-----------~v~~LLd~ygf~---~~~Igk----~g~~tl 62 (346)
T COG1817 2 KVWIDIGNPPHVHFF-KNLIWELEKKGHEVLITCRDFG-----------VVTELLDLYGFP---YKSIGK----HGGVTL 62 (346)
T ss_pred eEEEEcCCcchhhHH-HHHHHHHHhCCeEEEEEEeecC-----------cHHHHHHHhCCC---eEeecc----cCCccH
Confidence 566667777766654 4899999999999877665443 234567789983 344431 121221
Q ss_pred C----ChHHHHHHHHHHHHhcCCCEEEe
Q 026131 121 W----NHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 121 ~----~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
. ...+-...|.+++.+++||+.+-
T Consensus 63 ~~Kl~~~~eR~~~L~ki~~~~kpdv~i~ 90 (346)
T COG1817 63 KEKLLESAERVYKLSKIIAEFKPDVAIG 90 (346)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCceEee
Confidence 1 11233455888999999999775
No 130
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.67 E-value=3.1e+02 Score=24.69 Aligned_cols=85 Identities=15% Similarity=0.093 Sum_probs=51.3
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....+.++--|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++-++-+
T Consensus 23 i~~l~~~g~~p~Laii~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~lN~d~~ 90 (285)
T PRK14189 23 AAALTARGHQPGLAVILVGDNPASQVYVRNK--VKACEDNGF---HSLKDRYPAD-------LSEAELLARIDELNRDPK 90 (285)
T ss_pred HHHHHhCCCCCeEEEEEeCCCchHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHcCCCC
Confidence 3444455777777776666543 33344433 578999999 5666666531 245677777777655555
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 91 V~GIlvq~Plp--~~i~~~~ 108 (285)
T PRK14189 91 IHGILVQLPLP--KHIDSHK 108 (285)
T ss_pred CCeEEEeCCCC--CCCCHHH
Confidence 66678774433 4665554
No 131
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=37.56 E-value=1.4e+02 Score=27.13 Aligned_cols=20 Identities=10% Similarity=0.062 Sum_probs=14.2
Q ss_pred chHHHHHHHHhCCCcEEEEE
Q 026131 55 FFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 55 ~~Ggti~~~~~~G~~V~vv~ 74 (243)
-+=+....|.++|++|.+++
T Consensus 16 P~l~la~~L~~rGh~V~~~t 35 (401)
T cd03784 16 PLVALAWALRAAGHEVRVAT 35 (401)
T ss_pred HHHHHHHHHHHCCCeEEEee
Confidence 34466667788999887665
No 132
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.45 E-value=3.1e+02 Score=24.65 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=51.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=+.-+
T Consensus 21 v~~l~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~t~~~l~~~I~~lN~D~~ 88 (282)
T PRK14166 21 NQFLKSKGIESCLAVILVGDNPASQTYVKSK--AKACEECGI---KSLVYHLNEN-------TTQNELLALINTLNHDDS 88 (282)
T ss_pred HHHHHhCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 4445556877777777766543 23344433 478899999 5566666541 144567777776665556
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 89 V~GIivq~PLP--~~i~~~~ 106 (282)
T PRK14166 89 VHGILVQLPLP--DHICKDL 106 (282)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 66688875433 4555544
No 133
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=37.18 E-value=1.5e+02 Score=24.82 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=52.1
Q ss_pred CcEEEEecCchh-hhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCC------cEEEccCC
Q 026131 40 KNVLLVIAHPDD-ESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLE------QVKVLDLV 111 (243)
Q Consensus 40 ~~vL~v~aHPDD-E~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~------~~~~l~~p 111 (243)
.++++|..-|.= =+.+|--.+...+++ |.+|..+++... .+++.+-++.+|.+.+ ++.+.+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~---------~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP---------PEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS----------HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC---------HHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 355555555432 222333334445566 888865554432 3666666777886432 35566543
Q ss_pred CCCCCccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 112 DFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 112 d~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
....+.. .-+.+++...|.+.+++.+++.|+.
T Consensus 90 ~~~~~~~-~~~~~~l~~~i~~~i~~~~~~~vVI 121 (226)
T PF06745_consen 90 PERIGWS-PNDLEELLSKIREAIEELKPDRVVI 121 (226)
T ss_dssp GGGST-T-SCCHHHHHHHHHHHHHHHTSSEEEE
T ss_pred ccccccc-ccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3211100 1256788999999999999998765
No 134
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.91 E-value=2.3e+02 Score=23.78 Aligned_cols=74 Identities=20% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~P 139 (243)
.++.+.|++ .+++++..........|.+.++++++..|++...... +.+ + + .+...+.+.+++++ -.|
T Consensus 109 ~~l~~~G~~-~i~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~--~~~---~----~-~~~~~~~~~~~l~~~~~~ 177 (269)
T cd06281 109 EYLISLGHR-RIALVGGGSNTRPGRERLEGYKAAFAAAGLPPDPALV--RLS---T----P-AASGFDATRALLALPDRP 177 (269)
T ss_pred HHHHHCCCc-EEEEecCccccccHHHHHHHHHHHHHHcCCCCCHHHe--ecC---c----H-HHHHHHHHHHHHcCCCCC
Confidence 345566765 4555554333344567888888999888873211111 110 0 1 23345566677754 358
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
|.|++.
T Consensus 178 ~ai~~~ 183 (269)
T cd06281 178 TAIIAG 183 (269)
T ss_pred cEEEEc
Confidence 998875
No 135
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.65 E-value=3.2e+02 Score=24.74 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=51.8
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.+.|.+..++++.-|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=+.-+
T Consensus 22 v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~~ 89 (297)
T PRK14167 22 IETLEDAGVTPGLATVLMSDDPASETYVSMK--QRDCEEVGI---EAIDVEIDPD-------APAEELYDTIDELNADED 89 (297)
T ss_pred HHHHHhCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 3445556777777777767543 23334433 578999999 5666666531 245677777777766666
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.+=|+.+-|.. .|.|-..
T Consensus 90 V~GIlvq~PLP--~~i~~~~ 107 (297)
T PRK14167 90 VHGILVQMPVP--DHVDDRE 107 (297)
T ss_pred CCEEEEcCCCC--CCCCHHH
Confidence 67788874433 4555443
No 136
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=36.32 E-value=2.5e+02 Score=23.26 Aligned_cols=74 Identities=12% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
++.+.|++- +.+++..........|.+.++++++..|.+........ . .++.+...+.+.+++++. +|+
T Consensus 110 ~l~~~g~~~-i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~l~~~~~~~ 179 (268)
T cd01575 110 HLLARGYRR-IGFLGARMDDTRAQQRLEGFRAALRAAGLDPPLVVTTP--E-------PSSFALGRELLAELLARWPDLD 179 (268)
T ss_pred HHHHCCCCc-EEEecCCCCcccHHHHHHHHHHHHHHcCCCCCceeEec--c-------CCCHHHHHHHHHHHHhCCCCCC
Confidence 344566542 33333222223456788888888888886322211111 0 123345566677777654 588
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 180 ai~~~ 184 (268)
T cd01575 180 AVFCS 184 (268)
T ss_pred EEEEC
Confidence 88886
No 137
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=36.15 E-value=2.6e+02 Score=23.47 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+.|+..|+| +...+..+.. +.++.-+.+.+.+++++||++++.
T Consensus 43 ~~~~a~~~gIp---~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~D~iv~~ 87 (200)
T PRK05647 43 GLERAEAAGIP---TFVLDHKDFP-------SREAFDAALVEALDAYQPDLVVLA 87 (200)
T ss_pred HHHHHHHcCCC---EEEECccccC-------chhHhHHHHHHHHHHhCcCEEEhH
Confidence 45677889994 4444433321 122334456777888999999886
No 138
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=36.14 E-value=3.1e+02 Score=25.44 Aligned_cols=84 Identities=13% Similarity=0.134 Sum_probs=52.3
Q ss_pred HHHhC-CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 62 YLTSR-RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 62 ~~~~~-G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
++.++ |....++++--|+. +.....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=++-+.
T Consensus 78 ~l~~~~g~~P~LaiIlvGddpaS~~Yv~~k--~K~a~~~GI---~~~~~~l~~~-------~te~ell~~I~~lN~D~~V 145 (345)
T PLN02897 78 KMKKAVGKVPGLAVVLVGQQRDSQTYVRNK--IKACEETGI---KSLLAELPED-------CTEGQILSALRKFNEDTSI 145 (345)
T ss_pred HHHhccCCCCeEEEEEeCCChHHHHHHHHH--HHHHHhcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCCC
Confidence 33344 77777766666654 334455544 479999999 5666666541 2456777777777666666
Q ss_pred CEEEeeCCCCCCCCchHHHH
Q 026131 140 DLIITFDNYGVSGHCNHRDV 159 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~ 159 (243)
|=|+.+-|.. .|.|-..+
T Consensus 146 ~GIlVQlPLP--~hid~~~i 163 (345)
T PLN02897 146 HGILVQLPLP--QHLDESKI 163 (345)
T ss_pred CEEEEeCCCC--CCCCHHHH
Confidence 7788874433 56665443
No 139
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.09 E-value=3.2e+02 Score=24.47 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=51.3
Q ss_pred HHHHHhCCC-cEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSRRH-NLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~G~-~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++|. ...+.++--|+ .+.....|.++ ++|+.+|+ ++....+|.. ...+++.+.|.++=+.-
T Consensus 22 i~~l~~~g~~~P~Laii~vg~d~as~~Yv~~k~--k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~d~ 89 (278)
T PRK14172 22 VEERKENGLSIPKIASILVGNDGGSIYYMNNQE--KVANSLGI---DFKKIKLDES-------ISEEDLINEIEELNKDN 89 (278)
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHH--HHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 334444563 34555555554 33445566554 88999999 5666666531 24567878887776666
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.+=|+.+-|.. .|.|-..
T Consensus 90 ~V~GIlvqlPLP--~~~~~~~ 108 (278)
T PRK14172 90 NVHGIMLQLPLP--KHLDEKK 108 (278)
T ss_pred CCCeEEEcCCCC--CCCCHHH
Confidence 677788875433 4655444
No 140
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=35.70 E-value=2.7e+02 Score=25.51 Aligned_cols=75 Identities=13% Similarity=0.122 Sum_probs=49.5
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCcc-ccCChHHHHHHHHHHHH
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGFD-KLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~--~d~~~-~~~~~~~l~~~l~~~i~ 135 (243)
++=+++..|+.. +..-.+-.|..+-+.-||+ ..+..++.|+. +|..+ ..|+.+-++++-.+.|+
T Consensus 34 I~PiFV~eg~~~~~~I~SMPgv~r~s~d~l~~~~~~~~~lGi--~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik 111 (330)
T COG0113 34 IYPIFVVEGENIKEEIPSMPGVYRYSLDRLVEEAEELVDLGI--PAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIK 111 (330)
T ss_pred eEeEEEecCCCCccccCCCCCceeccHHHHHHHHHHHHhcCC--CEEEEeCCCcccccCcccccccCCCChHHHHHHHHH
Confidence 556677777631 2334444555555667999 46888888843 44322 34677788888888888
Q ss_pred hcCCCEEEeeC
Q 026131 136 NCSIDLIITFD 146 (243)
Q Consensus 136 ~~~Pd~V~t~d 146 (243)
+.-|++++..|
T Consensus 112 ~~~p~l~iitD 122 (330)
T COG0113 112 EAFPELVVITD 122 (330)
T ss_pred HhCCCeEEEee
Confidence 88889887655
No 141
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=35.67 E-value=2.7e+02 Score=23.43 Aligned_cols=66 Identities=9% Similarity=0.022 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 71 HILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
.+++++..........|.+-++++++..|.. +.....-. + .|+.++..+.+.+++++. +|+.|++.
T Consensus 127 ~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~---~~~~~~~~---~---~~~~~~~~~~~~~~l~~~~~~~ai~~~ 193 (275)
T cd06307 127 KVAVLAGSHRFRGHEEREMGFRSVLREEFPG---LRVLETLE---G---LDDPARAYEATRKLLARHPDLVGIYNA 193 (275)
T ss_pred eEEEEecCCCCcchHHHHHHHHHHHHhhCCC---cEEEeecc---C---CCChHHHHHHHHHHHHhCCCceEEEEC
Confidence 4455543222234567888899998877752 22211100 0 134445566777777654 58898886
No 142
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=34.96 E-value=62 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
+..++...+.+.+++.+||++++|+-
T Consensus 62 ~E~~lL~~f~~~i~~~dpdiivg~N~ 87 (199)
T cd05160 62 DEKELLKRFFDIIREYDPDILTGYNI 87 (199)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 45688999999999999999999943
No 143
>PRK03673 hypothetical protein; Provisional
Probab=34.82 E-value=2.5e+02 Score=26.46 Aligned_cols=78 Identities=15% Similarity=0.084 Sum_probs=45.1
Q ss_pred EEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEE-ccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCC
Q 026131 73 LCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKV-LDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNY 148 (243)
Q Consensus 73 v~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~-l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~ 148 (243)
.+++.|+. +.....-..-+.+.+..+|+ ++.. .-.+| +.+++.+.+.+... +.|+|+|.
T Consensus 5 ~Iis~GdEll~G~i~dtN~~~la~~L~~~G~---~v~~~~~v~D---------~~~~i~~~l~~a~~--~~DlVI~t--- 67 (396)
T PRK03673 5 EMLSTGDEVLHGQIVDTNAAWLADFFFHQGL---PLSRRNTVGD---------NLDALVAILRERSQ--HADVLIVN--- 67 (396)
T ss_pred EEEEecccCCCCeEEEhHHHHHHHHHHHCCC---EEEEEEEcCC---------CHHHHHHHHHHHhc--cCCEEEEc---
Confidence 44555543 23333444556667888998 3432 22233 34577777777655 57999996
Q ss_pred CCCCCchHHHHHHHHHHHH
Q 026131 149 GVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 149 g~d~H~DH~~~~~av~~a~ 167 (243)
|+-+..+.-.+.+++-+++
T Consensus 68 GGlGpt~dD~t~~avA~a~ 86 (396)
T PRK03673 68 GGLGPTSDDLSALAAATAA 86 (396)
T ss_pred CCCCCCCcccHHHHHHHHc
Confidence 4445555555666666654
No 144
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=34.80 E-value=4.2e+02 Score=25.49 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=49.1
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHH-HHHHHHHcCCCCCcEEEccCCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDE-LHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E-~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
...+||+. +.+-||=+. +...-+.+-|.+|..+....++.. . +.+..| +.+.++-.|. +....++-+|
T Consensus 311 ~L~GKrva-i~Gdp~~~i----~LarfL~elGmevV~vgt~~~~~~-~-~~~d~~~l~~~~~~~~~--~~~vive~~D-- 379 (457)
T CHL00073 311 LVRGKSVF-FMGDNLLEI----SLARFLIRCGMIVYEIGIPYMDKR-Y-QAAELALLEDTCRKMNV--PMPRIVEKPD-- 379 (457)
T ss_pred HHCCCEEE-EECCCcHHH----HHHHHHHHCCCEEEEEEeCCCChh-h-hHHHHHHHHHHhhhcCC--CCcEEEeCCC--
Confidence 35788886 777666653 666666778999877755444321 1 111222 2233444554 2333444322
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...+.+.+++.+||++++.
T Consensus 380 ------------~~el~~~i~~~~pDLlIgG 398 (457)
T CHL00073 380 ------------NYNQIQRIRELQPDLAITG 398 (457)
T ss_pred ------------HHHHHHHHhhCCCCEEEcc
Confidence 1224567788899999974
No 145
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=34.73 E-value=2.7e+02 Score=23.28 Aligned_cols=101 Identities=16% Similarity=0.208 Sum_probs=53.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.++|++ .+++++..+ ......|.+..+++++..|++........+. . . ...++..+.+.+++++. .||
T Consensus 115 ~l~~~G~~-~i~~l~~~~-~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~-~-----~-~~~~~~~~~~~~~l~~~~~~~ 185 (273)
T cd01541 115 YLIELGHR-KIAGIFKAD-DLQGVKRMKGFIKAYREHGIPFNPSNVITYT-T-----E-EKEEKLFEKIKEILKRPERPT 185 (273)
T ss_pred HHHHcCCc-CEEEecCCC-cccHHHHHHHHHHHHHHcCCCCChHHEEecc-c-----c-chhhHHHHHHHHHHcCCCCCC
Confidence 34456753 334444322 2345678888999999888732111111111 0 0 11235567777777653 589
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
.|++.+ . ..+..+.+++++.+ +.++.++...
T Consensus 186 av~~~~--d--------~~a~g~~~al~~~g~~~p~dv~vvg~d 219 (273)
T cd01541 186 AIVCYN--D--------EIALRVIDLLKELGLKIPEDISVVGFD 219 (273)
T ss_pred EEEEcC--c--------HHHHHHHHHHHHcCCCCCCcEEEEEcC
Confidence 999873 1 23444555555432 3455555443
No 146
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=34.53 E-value=65 Score=31.40 Aligned_cols=62 Identities=18% Similarity=0.106 Sum_probs=45.3
Q ss_pred hhcchHHHHHHHHhCCCcEEEEEEeCCCC---------------CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 52 ESMFFSPTINYLTSRRHNLHILCMSNGNA---------------DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 52 E~l~~Ggti~~~~~~G~~V~vv~lT~G~~---------------~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
|.++-|||-..|.+.|.+|..|.=-+|-+ +|+-..|..|..+.++..|+.+.++.+.|+-.+
T Consensus 26 eIiATgGTak~L~e~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~~~~~l~~~~I~~IDlVvvNLYPF 102 (511)
T TIGR00355 26 ELLSTGGTAKLLAEAGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDDDDADLEEHGIEPIDLVVVNLYPF 102 (511)
T ss_pred EEEEechHHHHHHHCCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCchHHHHHHHcCCCceeEEEEeccCh
Confidence 56778999999999999988876555543 233344544448889999998888888885333
No 147
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=34.42 E-value=3.1e+02 Score=23.83 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=38.7
Q ss_pred HHHhCCCcEEEEEEeCCCC-CC-chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 62 YLTSRRHNLHILCMSNGNA-DG-MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~-~~-~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
++.+.|++= +.+++ |.. .. ....|.+.++++++..|++........ .+ |+.+...+.+.++++. +|
T Consensus 170 ~L~~~G~~~-I~~i~-g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~-~~--------~~~~~~~~~~~~ll~~-~p 237 (329)
T TIGR01481 170 ELIAKGHKS-IAFVG-GPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCE-GK--------YSYDAGYKAFAELKGS-LP 237 (329)
T ss_pred HHHHCCCCe-EEEEe-cCcccccchHHHHHHHHHHHHHcCCCCCcceEEe-cC--------CChHHHHHHHHHHhCC-CC
Confidence 455677652 23333 222 12 246788889999998887532221211 11 2223334445555543 69
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
|.||+.
T Consensus 238 ~ai~~~ 243 (329)
T TIGR01481 238 TAVFVA 243 (329)
T ss_pred CEEEEc
Confidence 999886
No 148
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.24 E-value=5.2e+02 Score=26.30 Aligned_cols=22 Identities=0% Similarity=0.018 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....|.+++++.+||+|.+|.
T Consensus 387 ~~~~~L~~~lk~~kpDIVH~h~ 408 (694)
T PRK15179 387 EGTTKLTDVMRSSVPSVVHIWQ 408 (694)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC
Confidence 3457788999999999999874
No 149
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.14 E-value=3.5e+02 Score=24.47 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=52.2
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++ |....++++.-|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=++-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~ 88 (293)
T PRK14185 21 VAEIVAKGGKRPHLAAILVGHDGGSETYVANK--VKACEECGF---KSSLIRYESD-------VTEEELLAKVRELNQDD 88 (293)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 4445444 777777777777643 23333333 578999999 5666666541 14467777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.|=|+.+-|.. .|.|-..
T Consensus 89 ~V~GIlvqlPLP--~~i~~~~ 107 (293)
T PRK14185 89 DVDGFIVQLPLP--KHISEQK 107 (293)
T ss_pred CCCeEEEecCCC--CCCCHHH
Confidence 667788774433 4555444
No 150
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=33.76 E-value=2.5e+02 Score=24.35 Aligned_cols=22 Identities=5% Similarity=0.010 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....+.+.+++.+||+|+++.
T Consensus 65 ~~~~~l~~~~~~~~~dii~~~~ 86 (355)
T cd03819 65 LNVARLRRLIREEKVDIVHARS 86 (355)
T ss_pred HHHHHHHHHHHHcCCCEEEECC
Confidence 3456678888999999999874
No 151
>PRK04148 hypothetical protein; Provisional
Probab=33.69 E-value=2.4e+02 Score=22.35 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC---
Q 026131 39 KKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ--- 114 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~--- 114 (243)
++++|.|+ +|+|..++ .+.+.|.+|..+=.+. .+ .+.++..|+ +...-|.-+..
T Consensus 17 ~~kileIG-------~GfG~~vA~~L~~~G~~ViaIDi~~--------~a----V~~a~~~~~---~~v~dDlf~p~~~~ 74 (134)
T PRK04148 17 NKKIVELG-------IGFYFKVAKKLKESGFDVIVIDINE--------KA----VEKAKKLGL---NAFVDDLFNPNLEI 74 (134)
T ss_pred CCEEEEEE-------ecCCHHHHHHHHHCCCEEEEEECCH--------HH----HHHHHHhCC---eEEECcCCCCCHHH
Confidence 46788776 46666444 5667798775544332 22 223333455 44444432211
Q ss_pred -CCcc---ccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCC
Q 026131 115 -DGFD---KLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSG 152 (243)
Q Consensus 115 -d~~~---~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~ 152 (243)
.+.+ +.-+..|+...+.++-++.+.|++++| .+++.
T Consensus 75 y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~--l~~e~ 114 (134)
T PRK04148 75 YKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP--LSGEE 114 (134)
T ss_pred HhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc--CCCCC
Confidence 0111 112567999999999999999999998 66554
No 152
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=33.41 E-value=3.7e+02 Score=24.34 Aligned_cols=126 Identities=13% Similarity=0.029 Sum_probs=76.1
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC-------------------ch------HHHHHHHHHH
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG-------------------MG------NIRKDELHRA 94 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~-------------------~~------~~R~~E~~~A 94 (243)
.+|+++.-=-+=-.+|+++++ ..+.+|.++.+|++-|+.++. .+ ..+++.+.+.
T Consensus 92 ~~Vv~~~GDG~~~dIG~~~L~-~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~I 170 (299)
T PRK11865 92 VNVVAIGGDGGTADIGFQSLS-GAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLI 170 (299)
T ss_pred CeEEEEeCCchHhhccHHHHH-HHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHH
Confidence 356666655444567776655 455678999999998876531 01 2235566666
Q ss_pred HHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCc
Q 026131 95 CAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERN 174 (243)
Q Consensus 95 ~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~ 174 (243)
+...|++ -+.... + .+..++.+.+.+.++.-.|.+|....|-......|=..+.+..+.|++. .-
T Consensus 171 a~a~g~~--YVA~~~-~---------~~~~~l~~~i~~A~~~~Gps~I~v~sPC~~~~~~~~~~~~~~~klAvet---g~ 235 (299)
T PRK11865 171 MAAHGIP--YVATAS-I---------GYPEDFMEKVKKAKEVEGPAYIQVLQPCPTGWGFPPEKTIEIGRLAVET---GY 235 (299)
T ss_pred HHHcCCC--EEEEEe-C---------CCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHhc---Cc
Confidence 7777873 222222 1 1445788888888888889998888764432333444455566666653 23
Q ss_pred eEEeeeh
Q 026131 175 IEAWELM 181 (243)
Q Consensus 175 ~~~ye~~ 181 (243)
..+||..
T Consensus 236 ~plye~~ 242 (299)
T PRK11865 236 WPLFEIE 242 (299)
T ss_pred eeEEEEE
Confidence 4456654
No 153
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=33.16 E-value=43 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCchH
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (243)
+.+.|..++++++||+|+.. .|.|.|.+-
T Consensus 228 ~~~~l~~~~~~f~P~~ivvs--aG~D~~~~D 256 (311)
T PF00850_consen 228 FEEILLPALEEFRPDLIVVS--AGFDAHAGD 256 (311)
T ss_dssp HHHHHHHHHHHHT-SEEEEE--E-STTBTTS
T ss_pred HhhccccchhcccCcEEEEc--cCcccchhc
Confidence 34455667789999999987 687777655
No 154
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=33.15 E-value=2e+02 Score=27.51 Aligned_cols=31 Identities=13% Similarity=0.017 Sum_probs=25.0
Q ss_pred HHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 131 EEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 131 ~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
.++|+..+||+.+ -|+|.-+|-...++.|..
T Consensus 410 ~~LI~~~~PdilV----KGgDy~~~~i~g~~~v~~ 440 (467)
T COG2870 410 EELIEAVKPDILV----KGGDYKIEKIVGADIVEA 440 (467)
T ss_pred HHHHHHhCcceEE----ccCCCChhhccchhhhhh
Confidence 5678888999976 578888998888887764
No 155
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=33.12 E-value=93 Score=18.14 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=14.5
Q ss_pred CchHHHHHHHHH--HHHHHHHHHh
Q 026131 1 MSWLLVIVSTIV--VWVASLFKIL 22 (243)
Q Consensus 1 ~~~~~~~~~~~~--~~~~~~~~~~ 22 (243)
|.|-+++.|.+. +++|+.+-++
T Consensus 1 m~~~~~l~~~va~~L~vYL~~ALl 24 (29)
T PRK14759 1 MILDYSLAGAVSLGLLIYLTYALL 24 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 778777777666 5566665544
No 156
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=33.12 E-value=2.4e+02 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=26.0
Q ss_pred HHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeCCCC
Q 026131 89 DELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDNYG 149 (243)
Q Consensus 89 ~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~~g 149 (243)
+++..+++.+-.+.+++..+++.... +.+++.+.+.+.+++.+. .+++..|-.|
T Consensus 15 ~gl~~s~emI~G~~~~v~~v~~~~~~-------~~~~~~~~l~~~i~~~~~~d~vlILtDl~G 70 (322)
T PRK15088 15 EQLLKTAEMLLGEQENVAWIDFVPGE-------NAETLIEKYNAQLAKLDTSKGVLFLVDTWG 70 (322)
T ss_pred HHHHHHHHHhcCCCCCeEEEEccCCC-------CHHHHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 45555555542234556666653211 334555556666555432 2444455444
No 157
>PLN02727 NAD kinase
Probab=32.74 E-value=5.8e+02 Score=27.13 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=52.7
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccC
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLW 121 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~ 121 (243)
-+.++++|+-+- +.+++++|.+. ||++ .++.++ ...-..|.++||+.+|+ +++.+...+. ..
T Consensus 262 ~~~rsgQpspe~------la~LA~~GfKT-IINL-Rpd~E~-~q~~~~ee~eAae~~GL---~yVhIPVs~~----~a-- 323 (986)
T PLN02727 262 AFWRGGQVTEEG------LKWLLEKGFKT-IVDL-RAEIVK-DNFYQAAVDDAISSGKI---EVVKIPVEVR----TA-- 323 (986)
T ss_pred eEEEeCCCCHHH------HHHHHHCCCeE-EEEC-CCCCcC-CCchhHHHHHHHHHcCC---eEEEeecCCC----CC--
Confidence 457788877664 35677789765 2333 333332 23336778889999999 4444443221 11
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGV 150 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~ 150 (243)
+..+.++.+.+++++..|.=|+.|=..|.
T Consensus 324 pt~EqVe~fa~~l~~slpkPVLvHCKSGa 352 (986)
T PLN02727 324 PSAEQVEKFASLVSDSSKKPIYLHSKEGV 352 (986)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEECCCCC
Confidence 33466777777885444554555533554
No 158
>PRK06769 hypothetical protein; Validated
Probab=32.67 E-value=2.6e+02 Score=22.48 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=23.7
Q ss_pred chHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCC
Q 026131 55 FFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 55 ~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv 100 (243)
|.--+|.++.++|.++ .++|++........+........+.+|+
T Consensus 32 gv~e~L~~Lk~~G~~l--~I~Tn~~~~~~~~~~~~~~~~~l~~~g~ 75 (173)
T PRK06769 32 FTKASLQKLKANHIKI--FSFTNQPGIADGIATIADFVQELKGFGF 75 (173)
T ss_pred CHHHHHHHHHHCCCEE--EEEECCchhcCCcCCHHHHHHHHHhCCc
Confidence 3445788888888655 4556654321112222233444666787
No 159
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.61 E-value=3.8e+02 Score=24.22 Aligned_cols=86 Identities=12% Similarity=0.156 Sum_probs=52.3
Q ss_pred HHHHHhC-CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++ |....++++--|+. +.....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++-.+-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~ 88 (295)
T PRK14174 21 VEAYRAKTGKVPGLTVIIVGEDPASQVYVRNK--AKSCKEIGM---NSTVIELPAD-------TTEEHLLKKIEDLNNDP 88 (295)
T ss_pred HHHHHHccCCCCeEEEEEeCCChHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3444444 66777766666654 333444443 478999999 5666666541 24467777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRDV 159 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (243)
+.+=|+.+-|.. .|.|-..+
T Consensus 89 ~V~GIlvq~Plp--~~id~~~i 108 (295)
T PRK14174 89 DVHGILVQQPLP--KQIDEFAV 108 (295)
T ss_pred CCCEEEEeCCCC--CCCCHHHH
Confidence 667688875443 46665543
No 160
>PRK00654 glgA glycogen synthase; Provisional
Probab=32.57 E-value=96 Score=29.29 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=20.1
Q ss_pred cEEEEecCchhhh------cchHHHHHHHHhCCCcEEEEEE
Q 026131 41 NVLLVIAHPDDES------MFFSPTINYLTSRRHNLHILCM 75 (243)
Q Consensus 41 ~vL~v~aHPDDE~------l~~Ggti~~~~~~G~~V~vv~l 75 (243)
+|++|+.+-.=-. -.++..-..+++.|++|.|++-
T Consensus 2 ~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p 42 (466)
T PRK00654 2 KILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLP 42 (466)
T ss_pred eEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEec
Confidence 5777776621111 1134445555678999988773
No 161
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=32.24 E-value=1.8e+02 Score=26.92 Aligned_cols=64 Identities=13% Similarity=0.158 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHH-----HHHHHHHHHHhcCCCEEEe
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKS-----LAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~-----l~~~l~~~i~~~~Pd~V~t 144 (243)
..++.+-+|+-+ +|..=+|+.||+ +-+-+-.|.+.+- |. ..+... =.+.|..++++.+||.|+.
T Consensus 13 ~kvmLLGSGELG-------KEvaIe~QRLG~--eViAVDrY~~APA-mq-VAhrs~Vi~MlD~~al~avv~rekPd~IVp 81 (394)
T COG0027 13 TKVMLLGSGELG-------KEVAIEAQRLGV--EVIAVDRYANAPA-MQ-VAHRSYVIDMLDGDALRAVVEREKPDYIVP 81 (394)
T ss_pred eEEEEecCCccc-------hHHHHHHHhcCC--EEEEecCcCCChh-hh-hhhheeeeeccCHHHHHHHHHhhCCCeeee
Confidence 456777777654 677888999999 3344445655421 11 001111 1356788999999999875
No 162
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.04 E-value=3.8e+02 Score=24.10 Aligned_cols=85 Identities=14% Similarity=0.190 Sum_probs=50.8
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++ |....+.++.-|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++-.+-
T Consensus 21 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~ 88 (285)
T PRK14191 21 IQILTAQTGKRPKLAVILVGKDPASQTYVNMK--IKACERVGM---DSDLHTLQEN-------TTEAELLSLIKDLNTDQ 88 (285)
T ss_pred HHHHHhcCCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3344433 777777777777543 33344433 578899999 5566666541 24457777777776665
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.|=|+.+-|.. .|.|-..
T Consensus 89 ~V~GIlvq~PlP--~~i~~~~ 107 (285)
T PRK14191 89 NIDGILVQLPLP--RHIDTKM 107 (285)
T ss_pred CCCEEEEeCCCC--CCCCHHH
Confidence 667677774433 4555444
No 163
>TIGR02697 WPE_wolbac Wolbachia palindromic element (WPE) domain. This domain conceptually resembles TIGR01045, the Rickettsial palindromic element (RPE) domain. In both cases, a protein-coding palindromic element spreads through a genome, inserting usually in protein-coding regions. The additional protein coding sequence is thought to allow function of the host protein because of location in surface-exposed regions of the protein structure. Note that this model appears to work better in fragment mode.
Probab=32.04 E-value=48 Score=20.20 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=24.3
Q ss_pred EecCchhhhcchHHHHHHHHhCCC-cEEEEEEe
Q 026131 45 VIAHPDDESMFFSPTINYLTSRRH-NLHILCMS 76 (243)
Q Consensus 45 v~aHPDDE~l~~Ggti~~~~~~G~-~V~vv~lT 76 (243)
|.-|-|||.+-.+..+.++-.+.+ .|...+||
T Consensus 4 V~~hwDp~~li~n~~~~~l~nk~WIPVSat~MT 36 (36)
T TIGR02697 4 VPRHWDPENLIANERIRQLYNKNWIPVSATGMT 36 (36)
T ss_pred cccccCcchhhhhHHHHHHhccCceeeeeeecC
Confidence 556999999999999998887653 45555554
No 164
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=31.88 E-value=71 Score=26.75 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
++.++.....+.+.+.+||+|+.|+-.+
T Consensus 50 ~E~~lL~~f~~~i~~~dPDvi~g~N~~~ 77 (193)
T cd05784 50 DEKSLLLALIAWFAQYDPDIIIGWNVIN 77 (193)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEECCCcC
Confidence 4568999999999999999999995333
No 165
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=31.84 E-value=75 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=22.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+..++.....+++++.+||+|++++
T Consensus 47 ~E~~lL~~F~~~i~~~dPd~i~gyN 71 (188)
T cd05781 47 DDRKIIREFVKYVKEYDPDIIVGYN 71 (188)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEecC
Confidence 4568999999999999999999984
No 166
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.77 E-value=3.4e+02 Score=23.49 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=38.5
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
+.+++++..........|.+-++++++-.|. ..+...-+ ..|+.+...+.+.+++++. +||.|++.
T Consensus 143 ~~i~~i~~~~~~~~~~~R~~Gf~~~~~~~g~--~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 209 (305)
T cd06324 143 IDLLAISGDPTTPAAILREAGLRRALAEHPD--VRLRQVVY--------AGWSEDEAYEQAENLLKRYPDVRLIWAA 209 (305)
T ss_pred eeEEEEeCCCCChHHHHHHHHHHHHHHHCCC--ceEeeeec--------CCCCHHHHHHHHHHHHHHCCCccEEEEC
Confidence 3455555322233456788889999988872 12211101 1134455667778888764 58988876
No 167
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=31.57 E-value=3.1e+02 Score=22.90 Aligned_cols=104 Identities=15% Similarity=0.029 Sum_probs=68.1
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCC--CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC------CccccCC-------
Q 026131 58 PTINYLTSRRHNLHILCMSNGNAD--GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD------GFDKLWN------- 122 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~~--~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d------~~~~~~~------- 122 (243)
-.|..|.+.|.+|++. +-|.+-. .--..|..|+++.++.+|+ ++..-+|. ..+ +... .+
T Consensus 13 ~~~~~L~~~g~~vt~~-fyNPNIhP~~Ey~~R~~~~~~~~~~~~i---~~i~~~Y~-~~~w~~~v~~~e~-epE~g~RC~ 86 (176)
T PF02677_consen 13 YPLERLREEGFDVTGY-FYNPNIHPYEEYERRLEELKRFAEKLGI---PLIEGDYD-PEEWLRAVKGLED-EPEGGKRCR 86 (176)
T ss_pred HHHHHHHHCCCCeEEE-EeCCCCCcHHHHHHHHHHHHHHHHHcCC---CEEecCCC-HHHHHHHHhhCcc-CCccCchhH
Confidence 3678888899998655 4455432 2346899999999999999 46665542 100 1000 00
Q ss_pred --hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhh
Q 026131 123 --HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 123 --~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~ 169 (243)
.+.=.+.-++.-.+.+.|..-|. ...+.|.||..+..+..++.++
T Consensus 87 ~Cy~~RL~~tA~~A~e~gfd~FtTT--L~~Sp~k~~~~I~~iG~~~~~~ 133 (176)
T PF02677_consen 87 VCYDLRLEKTAQYAKELGFDYFTTT--LLISPYKNHELINEIGERLAKE 133 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEcc--ccCcCccCHHHHHHHHHHHHHh
Confidence 01112334455567889986666 7789999999999999888655
No 168
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=31.55 E-value=69 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGV 150 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~ 150 (243)
++.++...+.+.|++..||+|+.|+-.|.
T Consensus 81 ~E~~LL~~f~~~i~~~DPDiivG~Ni~~f 109 (234)
T cd05776 81 NERALLNFFLAKLQKIDPDVLVGHDLEGF 109 (234)
T ss_pred CHHHHHHHHHHHHhhcCCCEEEeeccCCC
Confidence 45688999999999999999999975554
No 169
>TIGR00758 UDG_fam4 uracil-DNA glycosylase, family 4. This well-conserved family of proteins is about 200 residues in length and homologous to the N-terminus of the DNA polymerase of phage SPO1 of Bacillus subtilis. The member from Thermus thermophilus HB8 is known to act as uracil-DNA glycosylase, an enzyme of DNA base excision repair. Its appearance as a domain of phage DNA polymerases could be consistent with uracil-DNA glycosylase activity.
Probab=31.53 E-value=2.4e+02 Score=22.92 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=33.5
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCCh---HHHHHHHHHHHHhcCCCEEEee
Q 026131 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNH---KSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~---~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+.+..+.+|++.+++++.+.-......+..... +.....+.+.|+..+|.+|++.
T Consensus 50 L~~~l~~~gl~~~~vy~t~~~kc~P~~~r~P~~~Ei~~c~~~l~~eI~~v~P~~Iv~l 107 (173)
T TIGR00758 50 LDEMLAAIGLSRENVYITNVVKCRPPNNRDPTPEEVEACAPYLVKQIELIRPKVIICL 107 (173)
T ss_pred HHHHHHHcCCCcccEEEeccccccCCCCCCcCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 344555688888888776642221110111122 2455668888999999999997
No 170
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=31.51 E-value=80 Score=23.39 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=20.1
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhccCcccccccccCCCCCcEEEEecCchh
Q 026131 3 WLLVIVST-IVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDD 51 (243)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~v~aHPDD 51 (243)
|++++.+. |++++.+++=++-+++ +|. + -=+.++.+-||||-
T Consensus 36 ~~lvI~~iFil~VilwfvCC~kRkr--sRr----P-IYrPvI~~~P~~~~ 78 (94)
T PF05393_consen 36 WFLVICGIFILLVILWFVCCKKRKR--SRR----P-IYRPVIGLEPQNLQ 78 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh--ccC----C-ccccccccCCCccc
Confidence 55666665 4444444433333331 222 1 12245666788875
No 171
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=31.39 E-value=4.4e+02 Score=24.65 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 67 RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 67 G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
|....++++--|+. +.....|.+ .++|+.+|+ +.....+|.. ...+++.+.|.++=++-+.|=|+.+
T Consensus 101 g~~P~LaiIlvG~dpaS~~Yv~~k--~K~~e~~GI---~~~~~~lpe~-------~te~ell~~I~~LN~D~~V~GIlVQ 168 (364)
T PLN02616 101 GVVPGLAVILVGDRKDSATYVRNK--KKACDSVGI---NSFEVRLPED-------STEQEVLKFISGFNNDPSVHGILVQ 168 (364)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHcCCCCCCEEEEe
Confidence 66677777776654 334455544 478999999 4555666541 2445777777777555555668887
Q ss_pred CCCCCCCCchHHH
Q 026131 146 DNYGVSGHCNHRD 158 (243)
Q Consensus 146 d~~g~d~H~DH~~ 158 (243)
-|.. .|.|-..
T Consensus 169 lPLP--~~id~~~ 179 (364)
T PLN02616 169 LPLP--SHMDEQN 179 (364)
T ss_pred CCCC--CCCCHHH
Confidence 5443 4666544
No 172
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=31.31 E-value=4.2e+02 Score=24.33 Aligned_cols=87 Identities=14% Similarity=0.118 Sum_probs=54.3
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCc--
Q 026131 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGF-- 117 (243)
Q Consensus 58 gti~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~--~d~~-- 117 (243)
+.+..+.++- .=|+=+++++|... +.+-.+-.|..+-+..+|+ ..+..++.|+. +|..
T Consensus 7 ~~~R~lv~Et~L~~~dlI~PlFV~eg~~~~~~I~smPG~~r~s~d~l~~~~~~~~~~Gi--~~v~LFgv~~~~~Kd~~~g 84 (320)
T cd04824 7 PLLRQWQSERTLTKSNLIYPIFITDNPDAKQPIDSLPGINRYGVNRLEEFLRPLVAKGL--RSVILFGVPLKPGKDDRSG 84 (320)
T ss_pred HHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEeCCCccccCCcCcc
Confidence 4455555431 12666788888642 2344455555666777999 67888888843 4322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.|+.+-++++-.+.|++.-||+++..|
T Consensus 85 s~a~~~~g~v~~air~iK~~~pdl~vi~D 113 (320)
T cd04824 85 SAADDEDGPVIQAIKLIREEFPELLIACD 113 (320)
T ss_pred ccccCCCChHHHHHHHHHHhCCCcEEEEe
Confidence 22366677777777777777799876554
No 173
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=31.21 E-value=1.5e+02 Score=23.15 Aligned_cols=62 Identities=18% Similarity=0.148 Sum_probs=35.4
Q ss_pred HHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHH
Q 026131 89 DELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 89 ~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~ 167 (243)
.-+.+.++.+|+ ++.... .|| +.+++.+.+.+.+++. |+|+|. |+.+..+.-.+.+++.++.
T Consensus 20 ~~l~~~l~~~G~---~v~~~~~v~D---------d~~~i~~~l~~~~~~~--D~Vitt---GG~g~~~~D~t~~a~~~~~ 82 (144)
T PF00994_consen 20 PFLAALLEELGI---EVIRYGIVPD---------DPDAIKEALRRALDRA--DLVITT---GGTGPGPDDVTPEALAEAG 82 (144)
T ss_dssp HHHHHHHHHTTE---EEEEEEEEES---------SHHHHHHHHHHHHHTT--SEEEEE---SSSSSSTTCHHHHHHHHHS
T ss_pred HHHHHHHHHcCC---eeeEEEEECC---------CHHHHHHHHHhhhccC--CEEEEc---CCcCcccCCcccHHHHHhc
Confidence 334555666887 333332 222 3467888887777765 999997 3333333334455555543
No 174
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.19 E-value=3.9e+02 Score=24.01 Aligned_cols=85 Identities=18% Similarity=0.161 Sum_probs=52.3
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+..+.++ |....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=++-
T Consensus 21 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~lN~d~ 88 (286)
T PRK14184 21 VAALTARHGRAPGLAVILVGEDPASQVYVRNK--ERACEDAGI---VSEAFRLPAD-------TTQEELEDLIAELNARP 88 (286)
T ss_pred HHHHHhccCCCCEEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3444444 777777776666543 33444443 578999999 5666666541 24567777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.|=|+.+-|.. .|.|-..
T Consensus 89 ~V~GIlvqlPLP--~~id~~~ 107 (286)
T PRK14184 89 DIDGILLQLPLP--KGLDSQR 107 (286)
T ss_pred cCceEEEecCCC--CCCCHHH
Confidence 667677774433 4666544
No 175
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=31.11 E-value=4.1e+02 Score=24.72 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=38.7
Q ss_pred hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 65 SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 65 ~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
+.|.+. ++++|++.....+. .++..++++.-|+ ++..++- ... -+..+.++...+..++.++|.|+.
T Consensus 46 ~~g~~~-~lvv~~~~~~~~g~--~~~v~~~L~~~gi---~~~~~~~--v~~-----~P~~~~v~~~~~~~r~~~~D~Iia 112 (395)
T PRK15454 46 TRGLKH-LFVMADSFLHQAGM--TAGLTRSLAVKGI---AMTLWPC--PVG-----EPCITDVCAAVAQLRESGCDGVIA 112 (395)
T ss_pred hcCCCE-EEEEcCcchhhCcc--HHHHHHHHHHcCC---eEEEECC--CCC-----CcCHHHHHHHHHHHHhcCcCEEEE
Confidence 347553 34456543222211 1335566666777 3444431 111 133466888889999999999999
Q ss_pred e
Q 026131 145 F 145 (243)
Q Consensus 145 ~ 145 (243)
-
T Consensus 113 v 113 (395)
T PRK15454 113 F 113 (395)
T ss_pred e
Confidence 7
No 176
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.03 E-value=4.1e+02 Score=24.12 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=49.9
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....++++--|+.. .....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=.+-+
T Consensus 24 i~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~t~~~l~~~I~~lN~D~~ 91 (301)
T PRK14194 24 VRTLKAAGIEPALAVILVGNDPASQVYVRNK--ILRAEEAGI---RSLEHRLPAD-------TSQARLLALIAELNADPS 91 (301)
T ss_pred HHHHHhCCCCCeEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHcCCCC
Confidence 4445455777777776666543 23334433 478888998 4555565531 244577777777655555
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 92 V~GIlvqlPLP--~~i~~~~ 109 (301)
T PRK14194 92 VNGILLQLPLP--AHIDEAR 109 (301)
T ss_pred CCeEEEeCCCC--CCCCHHH
Confidence 66677774433 4555444
No 177
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=30.99 E-value=53 Score=30.04 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCCEEEeeCC
Q 026131 127 AKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
...+.++|++.+||+|+++.|
T Consensus 89 ~~~l~~~i~~~~pDvIi~thp 109 (382)
T PLN02605 89 AREVAKGLMKYKPDIIVSVHP 109 (382)
T ss_pred HHHHHHHHHhcCcCEEEEeCc
Confidence 466788999999999999744
No 178
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=30.93 E-value=2.9e+02 Score=22.40 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=51.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC---C
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ---D 115 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~---d 115 (243)
.++++.|.- |-.-+..+..|.-.++.+.++.++++.|+..+ ..+..+...-.+..+.. +.-+|+. .
T Consensus 66 ~~~vv~i~G--DG~f~m~~~eL~ta~~~~l~vi~vV~NN~~~g---~~~~~~~~~~~~~~~~~------~~~~d~~~~a~ 134 (177)
T cd02010 66 DRKVVAVSG--DGGFMMNSQELETAVRLKIPLVVLIWNDNGYG---LIKWKQEKEYGRDSGVD------FGNPDFVKYAE 134 (177)
T ss_pred CCcEEEEEc--chHHHhHHHHHHHHHHHCCCeEEEEEECCcch---HHHHHHHHhcCCcccCc------CCCCCHHHHHH
Confidence 445666654 44444555567777888999999999999754 23322211101111110 0112210 0
Q ss_pred Ccc----ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 116 GFD----KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 116 ~~~----~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+++ ..-+.+++.+.+.+.+..-+|.+|-..
T Consensus 135 a~G~~~~~v~~~~el~~al~~a~~~~~p~liev~ 168 (177)
T cd02010 135 SFGAKGYRIESADDLLPVLERALAADGVHVIDCP 168 (177)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 111 112456788888888877778776554
No 179
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=30.64 E-value=1.8e+02 Score=22.29 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=35.0
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHH
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~ 167 (243)
+.+.++.+|. ++.... .+| +.+++.+.+.+.++ +.|+|+|. |+.+....-.+.+++.++.
T Consensus 23 l~~~l~~~G~---~~~~~~~v~D---------d~~~I~~~l~~~~~--~~dliitt---GG~g~g~~D~t~~~l~~~~ 83 (135)
T smart00852 23 LAELLTELGI---EVTRYVIVPD---------DKEAIKEALREALE--RADLVITT---GGTGPGPDDVTPEAVAEAL 83 (135)
T ss_pred HHHHHHHCCC---eEEEEEEeCC---------CHHHHHHHHHHHHh--CCCEEEEc---CCCCCCCCcCcHHHHHHHh
Confidence 4455777887 233322 122 34577888888775 48999996 4444444444555555543
No 180
>PRK03670 competence damage-inducible protein A; Provisional
Probab=30.58 E-value=3.4e+02 Score=23.76 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHH
Q 026131 89 DELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 89 ~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~ 167 (243)
.-+.+.+..+|+. +.... .+| +.+++.+.+.+.++ ...|+|+|. |+-+....-.+.+++.+++
T Consensus 23 ~~la~~L~~~G~~---v~~~~iV~D---------d~~~I~~~l~~a~~-~~~DlVItt---GGlGpt~dD~T~eava~a~ 86 (252)
T PRK03670 23 AFIAQKLTEKGYW---VRRITTVGD---------DVEEIKSVVLEILS-RKPEVLVIS---GGLGPTHDDVTMLAVAEAL 86 (252)
T ss_pred HHHHHHHHHCCCE---EEEEEEcCC---------CHHHHHHHHHHHhh-CCCCEEEEC---CCccCCCCCchHHHHHHHh
Confidence 3455567778983 33222 233 33566777766554 246999997 4333333344556666554
No 181
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=30.52 E-value=2.7e+02 Score=25.46 Aligned_cols=92 Identities=12% Similarity=0.129 Sum_probs=47.0
Q ss_pred EEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHH---HHHHHHHcCCCCCcEEEccCCC-CCCC
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDE---LHRACAVLKIPLEQVKVLDLVD-FQDG 116 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E---~~~A~~~LGv~~~~~~~l~~pd-~~d~ 116 (243)
.++++.-|+=. =+.+.+.++.+. +.++.++. | |.. +..| ........|.+...-..++... ...+
T Consensus 4 ~~v~GtRpe~i--klapv~~~l~~~~~~~~~lv~-t-GqH------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (365)
T TIGR03568 4 CVVTGTRADYG--LLRPLLKALQDDPDLELQLIV-T-GMH------LSPEYGNTVNEIEKDGFDIDEKIEILLDSDSNAG 73 (365)
T ss_pred EEEEecChhHH--HHHHHHHHHhcCCCCcEEEEE-e-CCC------CChhhccHHHHHHHcCCCCCCccccccCCCCCCC
Confidence 35566666543 468999998874 56665444 4 432 1111 1122222333111111222211 0001
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+.+ ....+...+.+++++.+||+|+++
T Consensus 74 ~~~--~~~~~~~~~~~~~~~~~Pd~vlv~ 100 (365)
T TIGR03568 74 MAK--SMGLTIIGFSDAFERLKPDLVVVL 100 (365)
T ss_pred HHH--HHHHHHHHHHHHHHHhCCCEEEEe
Confidence 111 223567788999999999999987
No 182
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=30.30 E-value=3.4e+02 Score=26.92 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=53.0
Q ss_pred HHHHHHHHhCCC-cE------EEEEEeCCCC----C---CchHHH---HHHHHHHHHHcCCCCCcEEEcc-CCCCCCCcc
Q 026131 57 SPTINYLTSRRH-NL------HILCMSNGNA----D---GMGNIR---KDELHRACAVLKIPLEQVKVLD-LVDFQDGFD 118 (243)
Q Consensus 57 Ggti~~~~~~G~-~V------~vv~lT~G~~----~---~~~~~R---~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~ 118 (243)
.+.|..++..|. +| .+.+++.|+. + ..++++ ..=+.+.++.+|+ ++...+ .+|
T Consensus 167 p~~i~~las~g~~~v~v~~~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~---~~~~~~~v~D------ 237 (633)
T PRK14498 167 PRDIGALAAGGVAEVPVYKKPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGG---EPVRYGIVPD------ 237 (633)
T ss_pred HHHHHHHHHCCCCEEEEecCcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCC---EEEEEEEeCC------
Confidence 366777777783 22 5667778853 1 012211 2224455777888 344433 222
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
+.+.+.+.|.+.++ +.|+|+|. |+.+..++-.+.+++..
T Consensus 238 ---d~~~i~~~l~~~~~--~~D~iItt---GG~s~g~~D~~~~~l~~ 276 (633)
T PRK14498 238 ---DEEELEAALRKALK--ECDLVLLS---GGTSAGAGDVTYRVIEE 276 (633)
T ss_pred ---CHHHHHHHHHHHHh--cCCEEEEC---CCCcCCCcccHHHHHHh
Confidence 34567777877765 79999996 55555555555555543
No 183
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=30.29 E-value=1.5e+02 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.++.+.|.++|++++||.+..=.
T Consensus 47 ~~I~~~l~~~i~~~~Pd~vaiE~ 69 (164)
T PRK00039 47 KQIYDGLSELIDEYQPDEVAIEE 69 (164)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeh
Confidence 46778899999999999988754
No 184
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=30.24 E-value=2.9e+02 Score=26.14 Aligned_cols=92 Identities=22% Similarity=0.203 Sum_probs=58.8
Q ss_pred HHHHHHHhCCCc-------EEEEEEeCCCC----C---CchHHH---HHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 58 PTINYLTSRRHN-------LHILCMSNGNA----D---GMGNIR---KDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 58 gti~~~~~~G~~-------V~vv~lT~G~~----~---~~~~~R---~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
..|.-++..|.. ..+.++++|+. + ..++++ .-=+.+.++.+|. +...++.- +|
T Consensus 158 ~~i~llas~Gi~~V~V~rkprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~---e~~~~giv--~D----- 227 (404)
T COG0303 158 AEIALLASLGIAEVKVYRKPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGG---EVVDLGIV--PD----- 227 (404)
T ss_pred HHHHHHHhCCCceEEEecCCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCC---ceeecccc--CC-----
Confidence 455666666732 45678899974 1 112222 2345677888898 45555532 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
+.+++.+.+++...+ .|+|+|. |+....|+-.+.++..+
T Consensus 228 -d~~~l~~~i~~a~~~--~DviIts---GG~SvG~~D~v~~~l~~ 266 (404)
T COG0303 228 -DPEALREAIEKALSE--ADVIITS---GGVSVGDADYVKAALER 266 (404)
T ss_pred -CHHHHHHHHHHhhhc--CCEEEEe---CCccCcchHhHHHHHHh
Confidence 456788888888775 9999996 66677777777777763
No 185
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=30.05 E-value=1.6e+02 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhc--CCCEEEeeC
Q 026131 125 SLAKIVEEEVVNC--SIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~--~Pd~V~t~d 146 (243)
.....+.+.+++. +||+|.+|.
T Consensus 99 ~~~~~l~~~~~~~~~~~DvIH~h~ 122 (439)
T TIGR02472 99 ELADNLLQHLRQQGHLPDLIHAHY 122 (439)
T ss_pred HHHHHHHHHHHHcCCCCCEEEEcc
Confidence 4445667777653 699998874
No 186
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=29.82 E-value=1.7e+02 Score=25.37 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=20.9
Q ss_pred CcEEEEecCchhhhcchHH-------HHHHHHhCCCcEEEEEEeCC
Q 026131 40 KNVLLVIAHPDDESMFFSP-------TINYLTSRRHNLHILCMSNG 78 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Gg-------ti~~~~~~G~~V~vv~lT~G 78 (243)
++||++...+ +.|| +...+.+.|++|.+++.+..
T Consensus 1 MkIl~~~~~~-----~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSD-----ISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCC-----CCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 3678876542 2233 23344567999999987754
No 187
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.77 E-value=4.1e+02 Score=23.83 Aligned_cols=85 Identities=13% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+..+.++|....++++.-|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=+.-+
T Consensus 21 v~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~t~~~l~~~I~~lN~d~~ 88 (282)
T PRK14182 21 VRALAARGVQTGLTVVRVGDDPASAIYVRGK--RKDCEEVGI---TSVEHHLPAT-------TTQAELLALIARLNADPA 88 (282)
T ss_pred HHHHHhCCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 3345556777777777766543 23344443 578999999 4556666541 244567777776666656
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.+=|+.+-|.. .|.|-..
T Consensus 89 V~GIivqlPLp--~~i~~~~ 106 (282)
T PRK14182 89 VHGILVQLPLP--KHVDERA 106 (282)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 66677774433 4555333
No 188
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=29.68 E-value=83 Score=26.07 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
++.++.....+.+++.+||++++++
T Consensus 55 ~E~~lL~~F~~~i~~~dpdiivgyN 79 (195)
T cd05780 55 TEKEMIKRFIEIVKEKDPDVIYTYN 79 (195)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEecC
Confidence 4568999999999999999999994
No 189
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=29.51 E-value=62 Score=29.14 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
++.+.-+.+.+++++++||+++..
T Consensus 138 ~E~eqp~~i~~Ll~~~~PDIlViT 161 (287)
T PF05582_consen 138 PEKEQPEKIYRLLEEYRPDILVIT 161 (287)
T ss_pred chHHhhHHHHHHHHHcCCCEEEEe
Confidence 566888999999999999997653
No 190
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=29.27 E-value=3.9e+02 Score=23.62 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHHHH
Q 026131 89 DELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSYL 167 (243)
Q Consensus 89 ~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~a~ 167 (243)
+=+.+-+..+|++-.+....+ | +.+++.+.+.....+ +|+||+. .|.. .|-|+ |.+++-.|+
T Consensus 24 ~~la~~L~~~G~~v~~~~~Vg--D---------~~~~I~~~l~~a~~r--~D~vI~t--GGLGPT~DDi--T~e~vAka~ 86 (255)
T COG1058 24 AFLADELTELGVDLARITTVG--D---------NPDRIVEALREASER--ADVVITT--GGLGPTHDDL--TAEAVAKAL 86 (255)
T ss_pred HHHHHHHHhcCceEEEEEecC--C---------CHHHHHHHHHHHHhC--CCEEEEC--CCcCCCccHh--HHHHHHHHh
Confidence 334455666888443333333 2 345778888887765 9999997 4432 34444 445554444
No 191
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.26 E-value=4.2e+02 Score=23.78 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=51.0
Q ss_pred HHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 61 NYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
..+.++|....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=++.+.
T Consensus 24 ~~l~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~t~~el~~~I~~lN~D~~V 91 (284)
T PRK14193 24 AALKEKGITPGLGTVLVGDDPGSQAYVRGK--HRDCAEVGI---TSIRRDLPAD-------ATQEELNAVIDELNADPAC 91 (284)
T ss_pred HHHHhCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCCC
Confidence 344455777777777666543 23333333 578999999 4555565531 2456777777777666666
Q ss_pred CEEEeeCCCCCCCCchHHH
Q 026131 140 DLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~ 158 (243)
+=|+.+-|.. .|.|-..
T Consensus 92 ~GIlvqlPlP--~~id~~~ 108 (284)
T PRK14193 92 TGYIVQLPLP--KHLDENA 108 (284)
T ss_pred CEEEEeCCCC--CCCCHHH
Confidence 7777774433 5666444
No 192
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=29.21 E-value=2.6e+02 Score=28.19 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 123 HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
.+++.+.|.+.+.....|+|+|. |+.+..+.-.+.+++.+.
T Consensus 509 ~~~I~~~l~~~~~~~~~DlVItT---GGts~g~~D~tpeal~~l 549 (659)
T PLN02699 509 VEKIKDVLQKWSDIDRMDLILTL---GGTGFTPRDVTPEATKEV 549 (659)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC---CCccCCCCcchHHHHHHH
Confidence 45677777777655579999996 545555555555555554
No 193
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=29.02 E-value=3.3e+02 Score=22.48 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=40.7
Q ss_pred HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE
Q 026131 63 LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL 141 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~ 141 (243)
+.++|++ .+.+++..........|.+.++++++..|+.........- + ++.+...+.+.+++++. +|+.
T Consensus 115 l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~l~~~~~~~a 184 (268)
T cd06271 115 LIALGHR-RIALLNPPEDLTFAQHRRAGYRRALAEAGLPLDPALIVSG-D--------MTEEGGYAAAAELLALPDRPTA 184 (268)
T ss_pred HHHcCCC-cEEEecCccccchHHHHHHHHHHHHHHhCCCCCCceEEeC-C--------CChHHHHHHHHHHHhCCCCCCE
Confidence 4456654 3344443322234567888899999988874212111110 0 13344556677777654 4899
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 185 i~~~ 188 (268)
T cd06271 185 IVCS 188 (268)
T ss_pred EEEc
Confidence 9986
No 194
>PLN00142 sucrose synthase
Probab=28.75 E-value=52 Score=33.96 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=34.7
Q ss_pred HHHHhhccCcccccccc-cCCCCCcEEEEecCch---hhhcch---HHHH---------------HHHHhCCCcE--EEE
Q 026131 18 LFKILNSSRSQSNAAFL-TTGDKKNVLLVIAHPD---DESMFF---SPTI---------------NYLTSRRHNL--HIL 73 (243)
Q Consensus 18 ~~~~~~~~~~~~~~~~~-~~~~~~~vL~v~aHPD---DE~l~~---Ggti---------------~~~~~~G~~V--~vv 73 (243)
|.-++-+-++..-..|. ....-.+|++|++|-. ..++|. ||-. .+++++|.+| .|.
T Consensus 257 l~~~~~~p~~~~~e~f~~~~p~~~~i~~iS~Hg~~~~~~~lG~~DtGGQ~vYVl~~aral~~el~~~l~~~G~~v~~~v~ 336 (815)
T PLN00142 257 LLDLLQAPDPSTLEKFLGRIPMVFNVVIFSPHGYFGQANVLGLPDTGGQVVYILDQVRALENEMLLRIKQQGLDIKPQIL 336 (815)
T ss_pred HHHHHhCCChhHHHHHHhhhhHhHhhheecccccccccccCCCCCCCCceehHHHHHHHHHHHHHHHHHhcCCCccceeE
Confidence 33444444443334442 2456678999999974 345763 3322 3344567766 466
Q ss_pred EEeCCC
Q 026131 74 CMSNGN 79 (243)
Q Consensus 74 ~lT~G~ 79 (243)
++|.-.
T Consensus 337 i~TR~i 342 (815)
T PLN00142 337 IVTRLI 342 (815)
T ss_pred EEEecc
Confidence 677643
No 195
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=28.43 E-value=3.5e+02 Score=22.53 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 90 ELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+..+.|+..|++ +..++..+.. +.++.-+.+.+.+++.+||++++.
T Consensus 41 ~~~~~A~~~gip---~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~D~iv~~ 86 (190)
T TIGR00639 41 YGLERAAQAGIP---TFVLSLKDFP-------SREAFDQAIIEELRAHEVDLVVLA 86 (190)
T ss_pred hHHHHHHHcCCC---EEEECccccC-------chhhhhHHHHHHHHhcCCCEEEEe
Confidence 335567788994 4445543321 122334556778888999999987
No 196
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=28.31 E-value=3.6e+02 Score=22.61 Aligned_cols=79 Identities=9% Similarity=0.011 Sum_probs=43.0
Q ss_pred hHHHHHH-HHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 026131 56 FSPTINY-LTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (243)
Q Consensus 56 ~Ggti~~-~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~ 132 (243)
+|..+++ +.++ |. -.+++++..........|.+.++++++..+- .++. .... ..|+.+...+.+.+
T Consensus 109 ~g~~~~~~l~~~~~g~-~~i~~i~~~~~~~~~~~R~~Gf~~~l~~~~~--~~~~--~~~~------~~~~~~~~~~~~~~ 177 (273)
T cd06309 109 EGRRAADWLAKATGGK-GNIVELQGTVGSSVAIDRKKGFAEVIKKYPN--MKIV--ASQT------GDFTRAKGKEVMEA 177 (273)
T ss_pred HHHHHHHHHHHHcCCC-ceEEEEeCCCCCchHHHHHHHHHHHHHHCCC--CEEe--eccC------CcccHHHHHHHHHH
Confidence 3444433 3444 54 3445554322223456788889999987631 1222 1111 11344556677788
Q ss_pred HHHhc--CCCEEEee
Q 026131 133 EVVNC--SIDLIITF 145 (243)
Q Consensus 133 ~i~~~--~Pd~V~t~ 145 (243)
++++. +|+.|++.
T Consensus 178 ~l~~~~~~~~aI~~~ 192 (273)
T cd06309 178 LLKAHGDDIDAVYAH 192 (273)
T ss_pred HHHhCCCCccEEEEC
Confidence 88765 48888886
No 197
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=28.12 E-value=4.7e+02 Score=23.95 Aligned_cols=87 Identities=11% Similarity=-0.005 Sum_probs=57.6
Q ss_pred chHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 55 FFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 55 ~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
|.||.|-++++.|.+|.-+-=|-. ..+|-+.+|- ++.+-|.-|-..=+ -+.+++.+.+.+.+
T Consensus 260 G~g~~Le~l~~tG~DVvgLDWTvd------------p~ear~~~g~---~VtlQGNlDP~~ly---~s~e~it~~v~~mv 321 (359)
T KOG2872|consen 260 GSGGALEELAQTGYDVVGLDWTVD------------PAEARRRVGN---RVTLQGNLDPGVLY---GSKEEITQLVKQMV 321 (359)
T ss_pred CcchHHHHHHhcCCcEEeeccccc------------HHHHHHhhCC---ceEEecCCChHHhc---CCHHHHHHHHHHHH
Confidence 789999999999999877755532 2446667885 67776655532111 25678899999999
Q ss_pred HhcCCCEEEeeCCCCC--CCCchHHHH
Q 026131 135 VNCSIDLIITFDNYGV--SGHCNHRDV 159 (243)
Q Consensus 135 ~~~~Pd~V~t~d~~g~--d~H~DH~~~ 159 (243)
.++.++--|.-=-+|. +..+||.+.
T Consensus 322 ~~fG~~ryI~NLGHGi~p~tp~e~v~~ 348 (359)
T KOG2872|consen 322 KDFGKSRYIANLGHGITPGTPPEHVAH 348 (359)
T ss_pred HHhCccceEEecCCCCCCCCCHHHHHH
Confidence 9999986555411333 234555443
No 198
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=28.04 E-value=1.9e+02 Score=24.47 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=37.1
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhC------CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSR------RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIP 101 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~------G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~ 101 (243)
.+++++| ||| +..|-|+..+.++ ..++.+++++|-.. +..++...+..+.||++
T Consensus 121 ~~~lVLV----DDE-iSTG~T~lnli~al~~~~p~~~yvvasL~d~~~----~~~~~~~~~~~~~lgi~ 180 (191)
T PF15609_consen 121 ARTLVLV----DDE-ISTGNTFLNLIRALHAKYPRKRYVVASLLDWRS----EEDRARFEALAEELGIP 180 (191)
T ss_pred CCCEEEE----ecC-ccchHHHHHHHHHHHHhCCCceEEEEEEeeCCC----HHHHHHHHHHHHHcCCc
Confidence 4455555 888 5899998887753 45688888998643 33344556677889984
No 199
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=27.97 E-value=4.5e+02 Score=23.64 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=47.0
Q ss_pred HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCC-CcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 59 TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPL-EQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~-~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
....+.++|++ .+.+++.+........|.+-.+++++..|++. ......+ + +..+.-.+.+.+++...
T Consensus 166 a~~~L~~~G~~-~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i~~~--~--------~~~~~g~~~~~~ll~~~ 234 (333)
T COG1609 166 ATEHLIELGHR-RIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWIVEG--D--------FSEESGYEAAERLLARG 234 (333)
T ss_pred HHHHHHHCCCc-eEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceEEec--C--------CChHHHHHHHHHHHhcC
Confidence 35566678865 23444444334456889999999999999953 1221111 0 13345566677777654
Q ss_pred C--CCEEEee
Q 026131 138 S--IDLIITF 145 (243)
Q Consensus 138 ~--Pd~V~t~ 145 (243)
. |+.||+.
T Consensus 235 ~~~ptAif~~ 244 (333)
T COG1609 235 EPRPTAIFCA 244 (333)
T ss_pred CCCCcEEEEc
Confidence 3 8999987
No 200
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=27.96 E-value=2.4e+02 Score=24.28 Aligned_cols=39 Identities=18% Similarity=0.310 Sum_probs=23.5
Q ss_pred cEEEEecCchhh---hcchHHHHHHHHhCCCcEEEEEEeCCC
Q 026131 41 NVLLVIAHPDDE---SMFFSPTINYLTSRRHNLHILCMSNGN 79 (243)
Q Consensus 41 ~vL~v~aHPDDE---~l~~Ggti~~~~~~G~~V~vv~lT~G~ 79 (243)
+|++|++.+..- +-.+-.....+.+.|++|.+++...+.
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALY 42 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeeccc
Confidence 578888877541 111222334445679999888877654
No 201
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=27.46 E-value=4e+02 Score=22.89 Aligned_cols=125 Identities=14% Similarity=0.074 Sum_probs=68.5
Q ss_pred CCcEEEEecCchhhhc--chHHHHHHHHhCCCcEEEEEEeCCCCCCchH-------------------------HHHHHH
Q 026131 39 KKNVLLVIAHPDDESM--FFSPTINYLTSRRHNLHILCMSNGNADGMGN-------------------------IRKDEL 91 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l--~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~-------------------------~R~~E~ 91 (243)
.++|+.|.- |=.+ ....-|...++.+.++.+|++-|+..+-.+. .+..++
T Consensus 80 ~r~VV~i~G---DG~~~~m~~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 156 (235)
T cd03376 80 DITVVAFAG---DGGTADIGFQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDL 156 (235)
T ss_pred CCeEEEEEc---CchHHhhHHHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCH
Confidence 456666663 4332 2235566678889999999999997651100 122345
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
.+.++.+|++ -+.... ..+.+++.+.+++.++.-+|.+|-..-+-......|-....+..+.+.+.
T Consensus 157 ~~iA~a~G~~--~~~~~~----------v~~~~el~~al~~a~~~~gP~lIev~~~C~~~~~~~~~~~~~~~~~~~~~-- 222 (235)
T cd03376 157 PLIMAAHNIP--YVATAS----------VAYPEDLYKKVKKALSIEGPAYIHILSPCPTGWRFDPSKTIEIARLAVET-- 222 (235)
T ss_pred HHHHHHcCCc--EEEEEc----------CCCHHHHHHHHHHHHhCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHhc--
Confidence 5556666651 111111 12456788888888888888876655332222223333345555555442
Q ss_pred CCceEEeeeh
Q 026131 172 ERNIEAWELM 181 (243)
Q Consensus 172 ~~~~~~ye~~ 181 (243)
..+-+|+..
T Consensus 223 -~~~~~~~~~ 231 (235)
T cd03376 223 -GFWPLYEYE 231 (235)
T ss_pred -CceeEEEEe
Confidence 345566653
No 202
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=27.42 E-value=4.9e+02 Score=23.89 Aligned_cols=75 Identities=13% Similarity=0.107 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCC--CCCCCcc-ccCChHHHHHHHHHHHH
Q 026131 70 LHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLV--DFQDGFD-KLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 70 V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~p--d~~d~~~-~~~~~~~l~~~l~~~i~ 135 (243)
|.-++++.|... +.+-.+-.|..+-+..+|+ ..+..++.+ +.+|... +.++.+.++..-.+.|+
T Consensus 27 I~PlFv~e~~~~~~~I~smPg~~r~s~d~l~~~v~~~~~~Gi--~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air~iK 104 (320)
T cd04823 27 ILPLFVHEGENQREPIPSMPGVFRLSIDELLKEAEEAVDLGI--PAVALFPVTPPELKSEDGSEAYNPDNLVCRAIRAIK 104 (320)
T ss_pred eeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHcCC--CEEEEecCCCcccCCcccccccCCCChHHHHHHHHH
Confidence 566778887431 1344455555566777999 577778872 2234321 23555556666566666
Q ss_pred hcCCCEEEeeC
Q 026131 136 NCSIDLIITFD 146 (243)
Q Consensus 136 ~~~Pd~V~t~d 146 (243)
+.-||+++..|
T Consensus 105 ~~~p~l~vi~D 115 (320)
T cd04823 105 EAFPELGIITD 115 (320)
T ss_pred HhCCCcEEEEe
Confidence 66699876554
No 203
>PF15050 SCIMP: SCIMP protein
Probab=27.35 E-value=67 Score=25.20 Aligned_cols=22 Identities=9% Similarity=0.191 Sum_probs=15.1
Q ss_pred HHHHHHH-HHHHHHHHHhhccCc
Q 026131 6 VIVSTIV-VWVASLFKILNSSRS 27 (243)
Q Consensus 6 ~~~~~~~-~~~~~~~~~~~~~~~ 27 (243)
|+||.++ +++|-.|||++..-+
T Consensus 17 I~vS~~lglIlyCvcR~~lRqGk 39 (133)
T PF15050_consen 17 ILVSVVLGLILYCVCRWQLRQGK 39 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 4455555 666777999998854
No 204
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.28 E-value=4.7e+02 Score=23.65 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=50.8
Q ss_pred HHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ |....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++-..-+
T Consensus 24 ~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~t~~el~~~I~~lN~D~~ 91 (297)
T PRK14168 24 AELKEKYGKVPGLVTILVGESPASLSYVTLK--IKTAHRLGF---HEIQDNQSVD-------ITEEELLALIDKYNNDDS 91 (297)
T ss_pred HHHHHcCCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 344444 677777776666543 23334433 578999999 4556666531 245677777777766666
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 92 V~GIivqlPlP--~~i~~~~ 109 (297)
T PRK14168 92 IHGILVQLPLP--KHINEKK 109 (297)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 67777774433 4655444
No 205
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=27.27 E-value=3.3e+02 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=20.2
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC---CCchHHHHHHHHHHHH
Q 026131 59 TINYLTSRRHNLHILCMSNGNA---DGMGNIRKDELHRACA 96 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~---~~~~~~R~~E~~~A~~ 96 (243)
++.++...|.+|..-....... .+..+.|.+|+.+|..
T Consensus 31 a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~ 71 (313)
T COG1619 31 AIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFS 71 (313)
T ss_pred HHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhc
Confidence 3455555666665544333322 1334667777776666
No 206
>PF02729 OTCace_N: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; InterPro: IPR006132 This entry contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and may also play a role in trimerization of the molecules []. The carboxyl-terminal, aspartate/ornithine-binding domain is is described by IPR006131 from INTERPRO. ; GO: 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 2P2G_D 2I6U_A 2YFK_B 3D6N_B 3SDS_A 3GD5_A 3R7L_B 3R7F_A 3R7D_A ....
Probab=27.16 E-value=2.7e+02 Score=22.04 Aligned_cols=64 Identities=16% Similarity=0.073 Sum_probs=41.2
Q ss_pred HHHHHH-HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHH
Q 026131 85 NIRKDE-LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGI 163 (243)
Q Consensus 85 ~~R~~E-~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av 163 (243)
..|.+- ++.|+..||. ++..++-.+.+ + ...|-.++..+++..+ .|+|+.- |++|..+.+.+
T Consensus 50 StRTR~SFe~A~~~LGg---~~i~~~~~~s~--~----~k~Esl~Dtar~ls~~-~D~iv~R-------~~~~~~~~~~a 112 (142)
T PF02729_consen 50 STRTRLSFEAAANRLGG---HVIYLDPSTSS--L----GKGESLEDTARVLSRY-VDAIVIR-------HPSHGALEELA 112 (142)
T ss_dssp -HHHHHHHHHHHHHTTC---EEEEEETTTSS--T----TTSSEHHHHHHHHHHH-CSEEEEE-------ESSHHHHHHHH
T ss_pred CchhhhhHHHhhhccee---EEEEECccccc--C----cCCCCHHHHHHHHHHh-hheEEEE-------eccchHHHHHH
Confidence 466555 5777899999 67777733322 2 1223355566677777 9998875 77887776665
Q ss_pred HH
Q 026131 164 WS 165 (243)
Q Consensus 164 ~~ 165 (243)
..
T Consensus 113 ~~ 114 (142)
T PF02729_consen 113 EH 114 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 207
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.11 E-value=4.4e+02 Score=23.31 Aligned_cols=21 Identities=14% Similarity=0.124 Sum_probs=16.4
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHGIW 164 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~ 164 (243)
||++|.-|| ..||+++.+|..
T Consensus 157 Pd~l~ViDp-----~~e~iAv~EA~k 177 (252)
T COG0052 157 PDVLFVIDP-----RKEKIAVKEANK 177 (252)
T ss_pred CCEEEEeCC-----cHhHHHHHHHHH
Confidence 999999865 668888777654
No 208
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.06 E-value=52 Score=25.62 Aligned_cols=9 Identities=0% Similarity=-0.326 Sum_probs=3.9
Q ss_pred CCCCCcEEE
Q 026131 36 TGDKKNVLL 44 (243)
Q Consensus 36 ~~~~~~vL~ 44 (243)
+....+.+.
T Consensus 33 P~~gt~w~~ 41 (130)
T PF12273_consen 33 PIYGTRWMA 41 (130)
T ss_pred CcCCceecC
Confidence 444444444
No 209
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=26.97 E-value=2.1e+02 Score=23.38 Aligned_cols=16 Identities=19% Similarity=0.088 Sum_probs=12.1
Q ss_pred HHHHhcCCCEEEeeCC
Q 026131 132 EEVVNCSIDLIITFDN 147 (243)
Q Consensus 132 ~~i~~~~Pd~V~t~d~ 147 (243)
.++.+.+||+|+|..|
T Consensus 86 ~il~r~rPdvii~nGp 101 (170)
T PF08660_consen 86 RILRRERPDVIISNGP 101 (170)
T ss_pred HHHHHhCCCEEEEcCC
Confidence 3456789999999743
No 210
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=26.94 E-value=1.1e+02 Score=25.85 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=42.1
Q ss_pred hhcchHHHHHHHHhCCCcEEEEEEeCCCC---------------CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 52 ESMFFSPTINYLTSRRHNLHILCMSNGNA---------------DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 52 E~l~~Ggti~~~~~~G~~V~vv~lT~G~~---------------~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
+.++.+||-..+.+.|.+|..|.=-+|-+ +++-..|..|....++.+|+.+-++.+.|+-.+
T Consensus 26 ~I~AT~GTAk~L~e~GI~v~~V~k~TgfpE~l~GRVKTLHP~ihggiL~~~~~~~~~~~~~~~i~~idlVvvNlYpF 102 (187)
T cd01421 26 EILSTGGTAKFLKEAGIPVTDVSDITGFPEILGGRVKTLHPKIHGGILARRDNEEHKDLEEHGIEPIDLVVVNLYPF 102 (187)
T ss_pred EEEEccHHHHHHHHcCCeEEEhhhccCCcHhhCCccccCChhhhhhhhcCCCChhHHHHHHcCCCCeeEEEEcccCh
Confidence 45677899999999998887775444432 233345554544478889998878888876433
No 211
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=26.83 E-value=4.9e+02 Score=23.74 Aligned_cols=94 Identities=15% Similarity=0.051 Sum_probs=53.4
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
+-+.+-|+.|.++... +--.+....+.|.+|.+-.+..+.. ....-.|+.+.+.-+|+ +.+.+- |.- |
T Consensus 101 gvd~iri~~~~~e~~~-~~~~i~~ak~~G~~v~~~l~~a~~~---~~e~l~~~a~~~~~~Ga--~~i~i~---DT~-G-- 168 (337)
T PRK08195 101 GVRVVRVATHCTEADV-SEQHIGLARELGMDTVGFLMMSHMA---PPEKLAEQAKLMESYGA--QCVYVV---DSA-G-- 168 (337)
T ss_pred CCCEEEEEEecchHHH-HHHHHHHHHHCCCeEEEEEEeccCC---CHHHHHHHHHHHHhCCC--CEEEeC---CCC-C--
Confidence 3456666677766543 4556666667788776655554432 23334444555566787 333333 331 1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
. ..++++.+.+..+-++.+|++-+-+
T Consensus 169 ~-~~P~~v~~~v~~l~~~l~~~i~ig~ 194 (337)
T PRK08195 169 A-LLPEDVRDRVRALRAALKPDTQVGF 194 (337)
T ss_pred C-CCHHHHHHHHHHHHHhcCCCCeEEE
Confidence 2 2455677777766666778876666
No 212
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=26.82 E-value=3.4e+02 Score=22.56 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=43.4
Q ss_pred hHHHHHH-HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHH
Q 026131 56 FSPTINY-LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (243)
Q Consensus 56 ~Ggti~~-~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i 134 (243)
.|-.+++ +.++|.+|.+..-.. +...++..+.++..|. ++...|.. +.+.+.+.+.++.
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~-------~~~~~~~~~l~~~~~~---~~~~~D~~----------~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNE-------EKLADALEELAKEYGA---EVIQCDLS----------DEESVEALFDEAV 67 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSH-------HHHHHHHHHHHHHTTS---EEEESCTT----------SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCEEEEEeCCh-------HHHHHHHHHHHHHcCC---ceEeecCc----------chHHHHHHHHHHH
Confidence 4444444 467898875554332 4446677777888886 35445432 3456677777777
Q ss_pred Hhc--CCCEEEee
Q 026131 135 VNC--SIDLIITF 145 (243)
Q Consensus 135 ~~~--~Pd~V~t~ 145 (243)
+++ ++|+++..
T Consensus 68 ~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 68 ERFGGRIDILVNN 80 (241)
T ss_dssp HHHCSSESEEEEE
T ss_pred hhcCCCeEEEEec
Confidence 775 78987653
No 213
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=26.69 E-value=3.7e+02 Score=22.28 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC-CC
Q 026131 63 LTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS-ID 140 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~-Pd 140 (243)
+.++|++ .+++++.... ......|.+-++++++..|++.. ...... .++.++..+.+.+++++.. |+
T Consensus 107 l~~~g~~-~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~ 175 (265)
T cd06291 107 LIERGCK-HIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVR---IIEIQE-------NFDDAEKKEEIKELLEEYPDID 175 (265)
T ss_pred HHHcCCc-EEEEEccCcccccchHHHHHHHHHHHHHcCCCCC---hheeec-------cccchHHHHHHHHHHhCCCCCC
Confidence 4456754 3445543322 23456788888888888887321 111111 0122335667777887654 68
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 176 ai~~~ 180 (265)
T cd06291 176 GIFAS 180 (265)
T ss_pred EEEEC
Confidence 88875
No 214
>PF15179 Myc_target_1: Myc target protein 1
Probab=26.59 E-value=72 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=19.8
Q ss_pred HHHHHHH-HHHHHHHHHhhccCccccc
Q 026131 6 VIVSTIV-VWVASLFKILNSSRSQSNA 31 (243)
Q Consensus 6 ~~~~~~~-~~~~~~~~~~~~~~~~~~~ 31 (243)
++||.|+ .+++.|+.|+++.+-++++
T Consensus 29 m~iGLviG~li~~LltwlSRRRASa~I 55 (197)
T PF15179_consen 29 MAIGLVIGALIWALLTWLSRRRASARI 55 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5788888 8889999999987644433
No 215
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.59 E-value=4.8e+02 Score=23.52 Aligned_cols=84 Identities=10% Similarity=-0.003 Sum_probs=48.8
Q ss_pred HHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ |....++++--|+.. .....|.+ .++|+.+|+ ++....+|.. ...+++.+.|.++=..-+
T Consensus 23 ~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~el~~~i~~lN~d~~ 90 (296)
T PRK14188 23 ARLKAAHGVTPGLAVVLVGEDPASQVYVRSK--GKQTKEAGM---ASFEHKLPAD-------TSQAELLALIARLNADPA 90 (296)
T ss_pred HHHHHccCCCCeEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 334344 777777777777543 23333333 578889999 4555555431 244677777777666656
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 91 V~GIlvq~Plp--~~~~~~~ 108 (296)
T PRK14188 91 IHGILVQLPLP--KHLDSEA 108 (296)
T ss_pred CcEEEEeCCCC--CCCCHHH
Confidence 66677774433 4555433
No 216
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=26.38 E-value=3.6e+02 Score=25.49 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHH
Q 026131 85 NIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGI 163 (243)
Q Consensus 85 ~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av 163 (243)
.....-+.+.++.+|+ ++.... .+| +.+++.+.|.+... +.|+|+|. |+-+..+.-.+.+++
T Consensus 19 dtN~~~l~~~L~~~G~---~v~~~~~v~D---------d~~~i~~~l~~a~~--~~DlVItt---GGlgpt~dD~t~eav 81 (413)
T TIGR00200 19 NTNAQWLADFLAHQGL---PLSRRTTVGD---------NPERLKTIIRIASE--RADVLIFN---GGLGPTSDDLTAETI 81 (413)
T ss_pred EchHHHHHHHHHHCCC---eEEEEEEeCC---------CHHHHHHHHHHHhc--CCCEEEEc---CCCCCCCcccHHHHH
Confidence 3344556667888998 333322 233 33567777776653 68999996 433333333444444
Q ss_pred HH
Q 026131 164 WS 165 (243)
Q Consensus 164 ~~ 165 (243)
..
T Consensus 82 a~ 83 (413)
T TIGR00200 82 AT 83 (413)
T ss_pred HH
Confidence 33
No 217
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.98 E-value=4.8e+02 Score=23.38 Aligned_cols=85 Identities=15% Similarity=0.264 Sum_probs=50.6
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++ |....++++.-|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++=+.-
T Consensus 21 v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~lN~D~ 88 (282)
T PRK14180 21 VQEYKHHTAITPKLVAIIVGNDPASKTYVASK--EKACAQVGI---DSQVITLPEH-------TTESELLELIDQLNNDS 88 (282)
T ss_pred HHHHHhccCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3444444 777777776666532 23333333 478999999 4555565531 24467777777776666
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
+.+=|+.+-|.. .|.|-..
T Consensus 89 ~V~GIivq~PlP--~~i~~~~ 107 (282)
T PRK14180 89 SVHAILVQLPLP--AHINKNN 107 (282)
T ss_pred CCCeEEEcCCCC--CCCCHHH
Confidence 667788874433 4555444
No 218
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=25.97 E-value=3.3e+02 Score=21.49 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCC-C--CchHHHH-------HHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHH
Q 026131 58 PTINYLTSRRHNLHILCMSNGNA-D--GMGNIRK-------DELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLA 127 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~-~--~~~~~R~-------~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~ 127 (243)
..|....+.|.+|..+++.+... . ..+..|. .++...++.+|+ .+.++.- + ..
T Consensus 15 ~aL~~A~~~~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~---~L~v~~g-----------~---~~ 77 (165)
T PF00875_consen 15 PALHAAAQNGDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGI---PLLVLRG-----------D---PE 77 (165)
T ss_dssp HHHHHHHHTTSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS----EEEEES-----------S---HH
T ss_pred HHHHHHHHcCCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCc---ceEEEec-----------c---hH
Confidence 34455677888888888887762 1 2244443 567778888898 4555431 1 35
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhh
Q 026131 128 KIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~ 169 (243)
+.|.+++++.+.+.|++. .+.-++.+.--..+.+.++.
T Consensus 78 ~~l~~l~~~~~~~~V~~~----~~~~~~~~~rd~~v~~~l~~ 115 (165)
T PF00875_consen 78 EVLPELAKEYGATAVYFN----EEYTPYERRRDERVRKALKK 115 (165)
T ss_dssp HHHHHHHHHHTESEEEEE-------SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCeeEec----cccCHHHHHHHHHHHHHHHh
Confidence 566778888999999987 23456777777777777764
No 219
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=25.73 E-value=4.8e+02 Score=24.66 Aligned_cols=92 Identities=16% Similarity=0.212 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCc-E------EEEEEeCCCC----C---CchHH---HHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 58 PTINYLTSRRHN-L------HILCMSNGNA----D---GMGNI---RKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 58 gti~~~~~~G~~-V------~vv~lT~G~~----~---~~~~~---R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
+.|..++..|.. | .+.+++.|+. + ..+++ -..-+.+.++.+|+ ++...+. ..|
T Consensus 175 ~~i~~Las~G~~~V~V~~~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~---~v~~~~~--v~D----- 244 (419)
T PRK14690 175 ADLALLSAVGLTRVSVRRPLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGH---APVDLGR--VGD----- 244 (419)
T ss_pred HHHHHHHhCCCCeeEeecCCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCC---EEEEEee--eCC-----
Confidence 567777777732 2 4667888853 1 01222 22345566888998 3443332 111
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
+.+.+.+.|.+.++ +-|+|+|. |+.+..|.-.+..+..+
T Consensus 245 -d~~~i~~~l~~a~~--~~DlIItT---GG~S~G~~D~v~~~l~~ 283 (419)
T PRK14690 245 -DRAALAARLDRAAA--EADVILTS---GGASAGDEDHVSALLRE 283 (419)
T ss_pred -CHHHHHHHHHHhCc--cCCEEEEc---CCccCCCcchHHHHHHh
Confidence 34567777777753 57999996 44444444444444444
No 220
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.72 E-value=5.4e+02 Score=23.84 Aligned_cols=53 Identities=4% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCCC--CCCCCchHHHHHHHHHHHHhhcCCCceEEee
Q 026131 127 AKIVEEEVVNCSIDLIITFDNY--GVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~--g~d~H~DH~~~~~av~~a~~~~~~~~~~~ye 179 (243)
++.+.+++.+.++.++..==|. ..+...|=+...+.-..+.+..+++.+..|.
T Consensus 215 vd~~l~ia~~~~~~V~WvGmP~~r~~~l~~dm~~ln~iy~~~vE~~~gk~i~i~d 269 (354)
T COG2845 215 VDAILKIAHTHKVPVLWVGMPPFRKKKLNADMVYLNKIYSKAVEKLGGKFIDIWD 269 (354)
T ss_pred HHHHHHHhcccCCcEEEeeCCCccccccchHHHHHHHHHHHHHHHhCCeEEEecc
Confidence 3445555555565555442221 2344555555555555555544444444444
No 221
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=25.71 E-value=62 Score=29.00 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
++.+.-+.+.+++++++||+++..
T Consensus 137 ~E~eqp~~i~~Ll~~~~PDIlViT 160 (283)
T TIGR02855 137 KEKEMPEKVLDLIEEVRPDILVIT 160 (283)
T ss_pred cchhchHHHHHHHHHhCCCEEEEe
Confidence 456778889999999999996653
No 222
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=25.54 E-value=4.1e+02 Score=22.33 Aligned_cols=80 Identities=6% Similarity=-0.055 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEeeCCCCCCCCchHHHHHH
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITFDNYGVSGHCNHRDVHH 161 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (243)
....|.+-.+++++..|++......... + ++.++..+.+.+++++ .+|+.|++.+ . ..+.
T Consensus 133 ~~~~R~~gf~~~~~~~g~~~~~~~~~~~-~--------~~~~~~~~~~~~~l~~~~~~~ai~~~~--d--------~~a~ 193 (269)
T cd06297 133 VFAERRAGFQQALKDAGRPFSPDLLAIT-D--------HSEEGGRLAMRHLLEKASPPLAVFASA--D--------QQAL 193 (269)
T ss_pred cHHHHHHHHHHHHHHcCCCCChhhEEeC-C--------CChhhHHHHHHHHHcCCCCCcEEEEcC--c--------HHHH
Confidence 4567888899999998884221111111 1 1223445667777764 3589999873 1 2444
Q ss_pred HHHHHHhhcC---CCceEEeeeh
Q 026131 162 GIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 162 av~~a~~~~~---~~~~~~ye~~ 181 (243)
.+.++++..+ +.++.+.-..
T Consensus 194 g~~~~l~~~g~~vP~di~vvg~d 216 (269)
T cd06297 194 GALQEAVELGLTVGEDVRVVGFD 216 (269)
T ss_pred HHHHHHHHcCCCCCCceEEEEEC
Confidence 5555555433 3355554443
No 223
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=25.54 E-value=4.8e+02 Score=23.13 Aligned_cols=95 Identities=15% Similarity=0.069 Sum_probs=50.2
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
+....+.|.+|.+-..+-|++......+-.|+.+.+.-+|+ +. +.++|.- |. ..+.++.+.+..+.+. -|
T Consensus 121 i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~--~~---i~l~DT~-G~---~~P~~v~~l~~~l~~~-~~ 190 (280)
T cd07945 121 IEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPI--KR---IMLPDTL-GI---LSPFETYTYISDMVKR-YP 190 (280)
T ss_pred HHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCC--CE---EEecCCC-CC---CCHHHHHHHHHHHHhh-CC
Confidence 44444578887766665554434445666777777777888 33 3444432 22 2444555555555443 36
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHhh
Q 026131 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~a~~~ 169 (243)
++-+.. | .|.|.-..-.-+..|++.
T Consensus 191 ~~~i~~--H---~Hnd~Gla~AN~laA~~a 215 (280)
T cd07945 191 NLHFDF--H---AHNDYDLAVANVLAAVKA 215 (280)
T ss_pred CCeEEE--E---eCCCCCHHHHHHHHHHHh
Confidence 655544 2 355654444444444443
No 224
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.51 E-value=3.9e+02 Score=22.11 Aligned_cols=73 Identities=15% Similarity=0.026 Sum_probs=41.9
Q ss_pred HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE
Q 026131 63 LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL 141 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~ 141 (243)
+.++|.+ .+++++..........|.+.+.++++..|++......... .|+.++..+.+.+++++. +||.
T Consensus 111 l~~~g~~-~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~a 180 (269)
T cd06288 111 LLAAGHR-RIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHG---------DWSADDGYEAAAALLDLDDRPTA 180 (269)
T ss_pred HHHcCCc-eEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeC---------CCChHHHHHHHHHHHhCCCCCCE
Confidence 4455654 4555554333334567888899999988863211111110 123344556677777664 5899
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 181 i~~~ 184 (269)
T cd06288 181 IFCG 184 (269)
T ss_pred EEEe
Confidence 9887
No 225
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=25.27 E-value=4e+02 Score=22.10 Aligned_cols=73 Identities=11% Similarity=0.073 Sum_probs=38.2
Q ss_pred HHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 026131 63 LTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (243)
+.++|.+ .+.+++... .......|.+.+.++++..|++......... .++.++..+.+.+++++ .+|+
T Consensus 111 l~~~g~~-~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~ 180 (268)
T cd06273 111 LIALGHR-RIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEA---------PYSIADGRAALRQLLEQPPRPT 180 (268)
T ss_pred HHHCCCC-eEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeC---------CCcHHHHHHHHHHHHcCCCCCC
Confidence 3445654 334443221 1223567888888888888864322222211 12333444556666654 4589
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 181 ai~~~ 185 (268)
T cd06273 181 AVICG 185 (268)
T ss_pred EEEEc
Confidence 98885
No 226
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.25 E-value=4e+02 Score=22.12 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=37.8
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (243)
|.+ .+.+++ |........|.+-++++++.. |+ ++. .... + ++.+...+.+.+++++. +|+.|++
T Consensus 120 g~~-~i~~i~-~~~~~~~~~R~~gf~~~~~~~~~~---~~~--~~~~---~----~~~~~~~~~~~~~l~~~~~~~ai~~ 185 (267)
T cd06322 120 GKG-QVAIID-YPTVQSVVDRVRGFKEALADYPNI---KIV--AVQP---G----ITRAEALTAAQNILQANPDLDGIFA 185 (267)
T ss_pred CCc-eEEEEe-cCCCccHHHHHHHHHHHHHhCCCc---EEE--EecC---C----CChHHHHHHHHHHHHhCCCCCEEEE
Confidence 654 445555 332334567888888898887 77 222 1111 0 12244556677777654 5899888
Q ss_pred e
Q 026131 145 F 145 (243)
Q Consensus 145 ~ 145 (243)
.
T Consensus 186 ~ 186 (267)
T cd06322 186 F 186 (267)
T ss_pred c
Confidence 6
No 227
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=25.11 E-value=2.1e+02 Score=25.33 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcE--EEccCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQV--KVLDLVD 112 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~--~~l~~pd 112 (243)
..++++||=|+. |-||+...++++ |++|+.++++ +.-.+..++-++..|++ +++ ...|+.|
T Consensus 60 l~~G~~vLDiGc-------GwG~~~~~~a~~~g~~v~gitlS--------~~Q~~~a~~~~~~~gl~-~~v~v~~~D~~~ 123 (273)
T PF02353_consen 60 LKPGDRVLDIGC-------GWGGLAIYAAERYGCHVTGITLS--------EEQAEYARERIREAGLE-DRVEVRLQDYRD 123 (273)
T ss_dssp --TT-EEEEES--------TTSHHHHHHHHHH--EEEEEES---------HHHHHHHHHHHHCSTSS-STEEEEES-GGG
T ss_pred CCCCCEEEEeCC-------CccHHHHHHHHHcCcEEEEEECC--------HHHHHHHHHHHHhcCCC-CceEEEEeeccc
Confidence 567788886653 667888888887 8777666654 33344455566677874 233 3334333
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHh
Q 026131 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLN 168 (243)
Q Consensus 113 ~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~ 168 (243)
... +.|.|++-.....-++.+.....+.+.+.++
T Consensus 124 ~~~----------------------~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk 157 (273)
T PF02353_consen 124 LPG----------------------KFDRIVSIEMFEHVGRKNYPAFFRKISRLLK 157 (273)
T ss_dssp -------------------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE
T ss_pred cCC----------------------CCCEEEEEechhhcChhHHHHHHHHHHHhcC
Confidence 210 5666666533222344555666666655543
No 228
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=24.91 E-value=3.3e+02 Score=25.32 Aligned_cols=49 Identities=12% Similarity=-0.048 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE 172 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~ 172 (243)
+.+++.+.+.+.+++.+||++++=. ......=-.+|+..+...-+....
T Consensus 64 n~eea~~~i~~mv~~~~pD~viaGP--aFnagrYG~acg~v~~aV~e~~~I 112 (349)
T PF07355_consen 64 NKEEALKKILEMVKKLKPDVVIAGP--AFNAGRYGVACGEVAKAVQEKLGI 112 (349)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcC--CcCCchHHHHHHHHHHHHHHhhCC
Confidence 5678999999999999999999742 222334446666666554443333
No 229
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=24.80 E-value=3.9e+02 Score=23.90 Aligned_cols=83 Identities=13% Similarity=0.226 Sum_probs=42.5
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
||++++... +.=.++..+.++|.++..|+...... ++-.........+.|+..|+| + +...+.
T Consensus 2 kIvf~G~~~-----~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip---~--~~~~~~------ 65 (309)
T PRK00005 2 RIVFMGTPE-----FAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIP---V--LQPEKL------ 65 (309)
T ss_pred EEEEECCCH-----HHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCC---E--ECcCCC------
Confidence 667776541 23467777777788875444322211 111111112345567778884 2 221111
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+++ .+.+++.+||++++.
T Consensus 66 --~~~~~----~~~l~~~~~Dliv~~ 85 (309)
T PRK00005 66 --RDPEF----LAELAALNADVIVVV 85 (309)
T ss_pred --CCHHH----HHHHHhcCcCEEEEe
Confidence 11222 345677899998876
No 230
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....
Probab=24.76 E-value=80 Score=27.79 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
++.++.....+.|++..||+|+.|+
T Consensus 221 ~E~~lL~~f~~~i~~~dPDii~GyN 245 (325)
T PF03104_consen 221 SEKELLEAFLDIIQEYDPDIITGYN 245 (325)
T ss_dssp SHHHHHHHHHHHHHHHS-SEEEESS
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec
Confidence 5568999999999999999999984
No 231
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=24.52 E-value=5.7e+02 Score=23.66 Aligned_cols=80 Identities=11% Similarity=-0.008 Sum_probs=46.1
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC---------CCCc--cccCCh-----HH
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF---------QDGF--DKLWNH-----KS 125 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~---------~d~~--~~~~~~-----~~ 125 (243)
.+.++|.+|..+++..+..... ..-.+..++.|+.||+ .++.+++++. .+.. ....+. ..
T Consensus 24 LL~~~G~~V~~v~~~~~~~~~~-~~d~~~a~~va~~LgI---p~~vvd~~~~f~~~v~~~f~~~y~~g~tpnpC~~Cnr~ 99 (360)
T PRK14665 24 LLLEAGYEVTGVTFRFYEFNGS-TEYLEDARALAERLGI---GHITYDARKVFRKQIIDYFIDEYMSGHTPVPCTLCNNY 99 (360)
T ss_pred HHHHcCCeEEEEEEecCCCCCC-hHHHHHHHHHHHHhCC---CEEEEecHHHHHHHHHhhhhhHHhccCCCCHHHHHHHH
Confidence 3345799999999877643221 1224456789999999 3566665421 0000 001111 12
Q ss_pred HH-HHHHHHHHhcCCCEEEee
Q 026131 126 LA-KIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 126 l~-~~l~~~i~~~~Pd~V~t~ 145 (243)
+. ..+.++.++.+.+.|.|=
T Consensus 100 ikf~~l~~~A~~~G~~~IATG 120 (360)
T PRK14665 100 LKWPLLAKIADEMGIFYLATG 120 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEEC
Confidence 32 456677778889998884
No 232
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=24.41 E-value=1.1e+02 Score=25.97 Aligned_cols=25 Identities=16% Similarity=0.116 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+..++.....+++++.+||+|++++
T Consensus 57 ~E~~lL~~f~~~i~~~dPdii~g~N 81 (207)
T cd05785 57 AEKELLEELVAIIRERDPDVIEGHN 81 (207)
T ss_pred CHHHHHHHHHHHHHHhCCCEEeccC
Confidence 4568999999999999999999983
No 233
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.40 E-value=5.3e+02 Score=23.23 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=49.7
Q ss_pred HHHHhC-CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ |....++++--|+. +.....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=++-+
T Consensus 29 ~~l~~~~g~~P~Laii~vg~d~aS~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~el~~~I~~LN~D~~ 96 (287)
T PRK14176 29 ERLKSNRGITPGLATILVGDDPASKMYVRLK--HKACERVGI---RAEDQFLPAD-------TTQEELLELIDSLNKRKD 96 (287)
T ss_pred HHHHhccCCCCeEEEEEECCCcchHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 334344 66666666666654 333444443 478899998 5566666541 245677777777766666
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 97 V~GIlvqlPLP--~~i~~~~ 114 (287)
T PRK14176 97 VHGILLQLPLP--KHLDPQE 114 (287)
T ss_pred CCeEEEcCCCC--CCCCHHH
Confidence 67778774433 4555444
No 234
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=24.15 E-value=4.2e+02 Score=22.03 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=53.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.++|++ .+++++..........|.+.++++++-.|++.+...... . .++.++..+.+.+++++. .|+
T Consensus 110 ~l~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~ 179 (268)
T cd06270 110 HLIELGHR-KIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIE-G--------DFTEEGGYAAMQELLARGAPFT 179 (268)
T ss_pred HHHHCCCc-eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEE-C--------CCCHHHHHHHHHHHHhCCCCCC
Confidence 33445654 344444222223456788888999988887422111111 0 123345566677777654 489
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
.|++.+ + .++..+.+++++.+ +.++.++...
T Consensus 180 ai~~~~--d--------~~a~g~~~~l~~~g~~ip~di~v~g~d 213 (268)
T cd06270 180 AVFCAN--D--------EMAAGAISALREHGISVPQDVSIIGFD 213 (268)
T ss_pred EEEEcC--c--------HHHHHHHHHHHHcCCCCCCceeEEEec
Confidence 999872 1 24445555555433 3455555544
No 235
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=24.14 E-value=4.8e+02 Score=22.64 Aligned_cols=74 Identities=14% Similarity=0.109 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 57 SPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 57 Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
-.....+.+.|++= +.++... ...+..|.+.++++++..|++ -+....++.. ..+....+.++.+
T Consensus 125 ~~~~~~l~~~g~~~-v~~l~~~--~~~~~~~~~~~~~~~~~~G~~--~~~~~~~~~~---------~~d~~~~~~~l~~- 189 (336)
T cd06326 125 AAIVRHLVTLGLKR-IAVFYQD--DAFGKDGLAGVEKALAARGLK--PVATASYERN---------TADVAAAVAQLAA- 189 (336)
T ss_pred HHHHHHHHHhCCce-EEEEEec--CcchHHHHHHHHHHHHHcCCC--eEEEEeecCC---------cccHHHHHHHHHh-
Confidence 44445555667652 2333322 235678889999999999983 2222233311 1122333444433
Q ss_pred cCCCEEEee
Q 026131 137 CSIDLIITF 145 (243)
Q Consensus 137 ~~Pd~V~t~ 145 (243)
.+||.|++.
T Consensus 190 ~~~dav~~~ 198 (336)
T cd06326 190 ARPQAVIMV 198 (336)
T ss_pred cCCCEEEEE
Confidence 479999886
No 236
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.00 E-value=5.3e+02 Score=23.14 Aligned_cols=85 Identities=13% Similarity=0.136 Sum_probs=49.4
Q ss_pred HHHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++ |....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. ...+++.+.|.++-++-
T Consensus 22 v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k--~k~~~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~lN~d~ 89 (284)
T PRK14179 22 VAKLKEEKGIVPGLVVILVGDNPASQVYVRNK--ERSALAAGF---KSEVVRLPET-------ISQEELLDLIERYNQDP 89 (284)
T ss_pred HHHHHhccCCCceEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3444444 666677666666542 33344433 478899999 4556665541 24467777777776665
Q ss_pred CCCEEEeeCCCCCCCCchHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~ 158 (243)
..|=|+.+-|.. .|.|-..
T Consensus 90 ~V~GIivqlPlp--~~i~~~~ 108 (284)
T PRK14179 90 TWHGILVQLPLP--KHINEEK 108 (284)
T ss_pred CCCEEEEcCCCC--CCCCHHH
Confidence 667677774433 4555333
No 237
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.75 E-value=5.4e+02 Score=23.16 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=49.6
Q ss_pred HHHHhC-CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ |....++++--|+.. .....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=..-+
T Consensus 23 ~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~LN~D~~ 90 (288)
T PRK14171 23 QELKSQTNASPKLAIVLVGDNPASIIYVKNK--IKNAHKIGI---DTLLVNLSTT-------IHTNDLISKINELNLDNE 90 (288)
T ss_pred HHHHhccCCCCeEEEEEeCCCccHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHcCCCC
Confidence 344444 777777766666543 23334433 578899999 5556666531 244567777777655555
Q ss_pred CCEEEeeCCCCCCCCchHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRD 158 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~ 158 (243)
.|=|+.+-|.. .|.|-..
T Consensus 91 V~GIlvqlPLP--~~id~~~ 108 (288)
T PRK14171 91 ISGIIVQLPLP--SSIDKNK 108 (288)
T ss_pred CCEEEEeCCCC--CCCCHHH
Confidence 66677774433 4666444
No 238
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.72 E-value=4.3e+02 Score=22.00 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 82 GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 82 ~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
.....|.+-++++++..|.+ +..... . ..|+.++..+.+.+++++. +|+.|++.
T Consensus 138 ~~~~~r~~gf~~~l~~~~~~---~~~~~~-~------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 192 (277)
T cd06319 138 KNGQKRTKGFKEAMKEAGCD---LAGIRQ-Q------KDFSYQETFDYTNDLLTANPDIRAIWLQ 192 (277)
T ss_pred ccHHHHHHHHHHHHHhcCCc---eEeecc-C------CCCCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 34678888899999999873 222111 0 0134455566777777654 36788886
No 239
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=23.61 E-value=6.2e+02 Score=23.82 Aligned_cols=92 Identities=18% Similarity=0.185 Sum_probs=53.1
Q ss_pred HHHHHHHHhCCCc-E------EEEEEeCCCC----C---CchHHH---HHHHHHHHHHcCCCCCcEEEccC-CCCCCCcc
Q 026131 57 SPTINYLTSRRHN-L------HILCMSNGNA----D---GMGNIR---KDELHRACAVLKIPLEQVKVLDL-VDFQDGFD 118 (243)
Q Consensus 57 Ggti~~~~~~G~~-V------~vv~lT~G~~----~---~~~~~R---~~E~~~A~~~LGv~~~~~~~l~~-pd~~d~~~ 118 (243)
.+.|..++..|.. | .+.++++|+. + ..+++| ..-+.+.++.+|+ ++..++. +|
T Consensus 158 p~~i~lLas~G~~~V~V~~~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~---~~~~~~~v~D------ 228 (411)
T PRK10680 158 TAELPVLASLGIAEVPVVRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC---EVINLGIIRD------ 228 (411)
T ss_pred HHHHHHHHhCCCCeEEecCCCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCC---EEEEEEEeCC------
Confidence 4777788888832 3 5678888863 1 112222 2234556788898 3444432 22
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHH
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS 165 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~ 165 (243)
+.+++.+.|.+.. .+.|+|+|. |+.+..++-.+.++..+
T Consensus 229 ---d~~~i~~~l~~a~--~~~DlvItt---GG~S~G~~D~~~~al~~ 267 (411)
T PRK10680 229 ---DPHALRAAFIEAD--SQADVVISS---GGVSVGEADYTKTILEE 267 (411)
T ss_pred ---CHHHHHHHHHHhc--cCCCEEEEc---CCCCCCCcchHHHHHHh
Confidence 3346666666642 468999996 55555555555555544
No 240
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=23.52 E-value=5.6e+02 Score=23.22 Aligned_cols=78 Identities=19% Similarity=0.176 Sum_probs=47.9
Q ss_pred CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 67 RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 67 G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
|....++++--|+. +.....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++-..-+.+=|+.+
T Consensus 37 g~~P~LaiI~vg~d~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~s~~el~~~I~~lN~D~~V~GIlvq 104 (299)
T PLN02516 37 GKVPGLAVVIVGSRKDSQTYVNMK--RKACAEVGI---KSFDVDLPEN-------ISEAELISKVHELNANPDVHGILVQ 104 (299)
T ss_pred CCCCeEEEEEECCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCCCCeEEEe
Confidence 77677766666653 333444443 478999999 5556666531 2456777777777666566667777
Q ss_pred CCCCCCCCchHHH
Q 026131 146 DNYGVSGHCNHRD 158 (243)
Q Consensus 146 d~~g~d~H~DH~~ 158 (243)
-|. ..|.|-..
T Consensus 105 ~Pl--P~~id~~~ 115 (299)
T PLN02516 105 LPL--PKHINEEK 115 (299)
T ss_pred cCC--CCCcCHHH
Confidence 443 34555443
No 241
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=23.35 E-value=4.4e+02 Score=21.97 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=57.0
Q ss_pred chhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHH
Q 026131 49 PDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAK 128 (243)
Q Consensus 49 PDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~ 128 (243)
.+|-.++|=|-...+.+.|....+++ |+.+.+. .|..+-.+..|+ .+.-+|+-+|.. +...
T Consensus 21 ~~~~~i~aDgGa~~l~~~gi~Pd~ii---GDfDSi~----~~~~~~~~~~~~-----~~~~~p~~KD~T-------D~e~ 81 (208)
T cd07995 21 KADLIIAADGGANHLLDLGIVPDLII---GDFDSIS----PEVLEYYKSKGV-----EIIHFPDEKDFT-------DFEK 81 (208)
T ss_pred cCCEEEEEChHHHHHHHcCCCCCEEE---ecCcCCC----HHHHHHHHhcCC-----eEEECCCCCCCC-------HHHH
Confidence 34556677777777888888877776 7766553 233333333465 355566544432 2344
Q ss_pred HHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHH
Q 026131 129 IVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a 166 (243)
.|....++ .++-|+.. .+..+-.||....-....-
T Consensus 82 Al~~~~~~-~~~~i~i~--Ga~GgR~DH~lani~~l~~ 116 (208)
T cd07995 82 ALKLALER-GADEIVIL--GATGGRLDHTLANLNLLLK 116 (208)
T ss_pred HHHHHHHc-CCCEEEEE--ccCCCcHHHHHHHHHHHHH
Confidence 44444443 55556666 4455799999887766544
No 242
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=23.21 E-value=5.4e+02 Score=22.94 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=58.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHH---------H-----------HHHHHHHHH
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNI---------R-----------KDELHRACA 96 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~---------R-----------~~E~~~A~~ 96 (243)
.+.++|++++-=-|--.+|++ -+...+++|.++.+|++-|+..+-.+.. | .....+.++
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig~~-eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~ 153 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIGLG-HLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALAL 153 (279)
T ss_pred CCCCcEEEEECChHHHHccHH-HHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHH
Confidence 345677777754333445544 4555677889999999999865311100 0 114445666
Q ss_pred HcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 97 VLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 97 ~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
.+|++ ..--.++ .+.+++.+.|.+.++.-.|.+|-...|
T Consensus 154 a~G~~---~Va~~~~---------~~~~~l~~~l~~Al~~~Gps~I~v~~p 192 (279)
T PRK11866 154 AAGAT---FVARGFS---------GDVKHLKEIIKEAIKHKGFSFIDVLSP 192 (279)
T ss_pred HCCCC---EEEEEcC---------CCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 66762 1111111 145678888898888778888766554
No 243
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=22.97 E-value=3.4e+02 Score=20.49 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=42.9
Q ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--CCEEEeeCCCC
Q 026131 72 ILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS--IDLIITFDNYG 149 (243)
Q Consensus 72 vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~--Pd~V~t~d~~g 149 (243)
++.+|-| .--+++.++++.+--+.+++..++++... +.++..+.+.+.+++.+ -.+++..|-.|
T Consensus 3 ili~sHG-------~~A~gi~~~~~~i~G~~~~i~~~~~~~~~-------~~~~~~~~i~~~i~~~~~~~~viil~Dl~G 68 (122)
T cd00006 3 IIIATHG-------GFASGLLNSAEMILGEQENVEAIDFPPGE-------SPDDLLEKIKAALAELDSGEGVLILTDLFG 68 (122)
T ss_pred EEEEcCH-------HHHHHHHHHHHHhcCCCCCeEEEEeCCCC-------CHHHHHHHHHHHHHHhCCCCcEEEEEeCCC
Confidence 4566655 23466777877763333578888875421 44677888888888864 34777777666
Q ss_pred CCC
Q 026131 150 VSG 152 (243)
Q Consensus 150 ~d~ 152 (243)
++.
T Consensus 69 GSp 71 (122)
T cd00006 69 GSP 71 (122)
T ss_pred CCH
Confidence 543
No 244
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=22.83 E-value=4e+02 Score=21.27 Aligned_cols=85 Identities=13% Similarity=0.154 Sum_probs=45.4
Q ss_pred ecCchhhhcchHHHHHHH-HhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChH
Q 026131 46 IAHPDDESMFFSPTINYL-TSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHK 124 (243)
Q Consensus 46 ~aHPDDE~l~~Ggti~~~-~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~ 124 (243)
..-||++. .|-.+..+ .+.|++ .+.+++.... .....|.+.++++++..|+ .+......+ ++.+
T Consensus 103 ~~~~~~~~--~~~~~~~~l~~~~~~-~i~~i~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--------~~~~ 167 (269)
T cd01391 103 RVGPDNEQ--AGEAAAEYLAEKGWK-RVALIYGDDG-AYGRERLEGFKAALKKAGI---EVVAIEYGD--------LDTE 167 (269)
T ss_pred EEcCCcHH--HHHHHHHHHHHhCCc-eEEEEecCCc-chhhHHHHHHHHHHHhcCc---EEEeccccC--------CCcc
Confidence 33445554 24444444 345644 3344443332 4567788889999988886 222221111 1111
Q ss_pred HHHHHHHHHHHhc-CCCEEEee
Q 026131 125 SLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 125 ~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
...+.+.+.+++. +|+.|+..
T Consensus 168 ~~~~~~~~~l~~~~~~~~i~~~ 189 (269)
T cd01391 168 KGFQALLQLLKAAPKPDAIFAC 189 (269)
T ss_pred ccHHHHHHHHhcCCCCCEEEEc
Confidence 3345566666666 79999886
No 245
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.77 E-value=4.5e+02 Score=21.87 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=52.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (243)
++.++|++ .+.+++..........|.+-++++++..|.+....... +.+ ++.++..+.+.+++++ .+||
T Consensus 110 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~l~~~~~~~ 179 (269)
T cd06293 110 HLARAGHR-RIAFVGGPDALISARERYAGYREALAEAHIPEVPEYVC-FGD--------YTREFGRAAAAQLLARGDPPT 179 (269)
T ss_pred HHHHCCCc-eEEEEecCcccccHHHHHHHHHHHHHHcCCCCChheEE-ecC--------CCHHHHHHHHHHHHcCCCCCC
Confidence 44556764 33444322112234568888999999988742211111 111 2334445667777764 4589
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEeeeh
Q 026131 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWELM 181 (243)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye~~ 181 (243)
.|++.+ | ..+..+..++++.+ |.++.++...
T Consensus 180 ai~~~~--------d--~~a~g~~~al~~~g~~vp~di~i~g~d 213 (269)
T cd06293 180 AIFAAS--------D--EIAIGLLEVLRERGLSIPGDMSLVGFD 213 (269)
T ss_pred EEEEcC--------c--HHHHHHHHHHHHcCCCCccceEEEeec
Confidence 999862 2 23444556655433 2455555443
No 246
>PRK00871 glutathione-regulated potassium-efflux system ancillary protein KefF; Provisional
Probab=22.75 E-value=1.3e+02 Score=24.99 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=17.8
Q ss_pred EEEEecCchhhhcchHHHHHHHHh
Q 026131 42 VLLVIAHPDDESMFFSPTINYLTS 65 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~~~~ 65 (243)
+|+|.+|||-+.-.....+....+
T Consensus 2 iLvi~aHP~~~~S~~n~al~~~~~ 25 (176)
T PRK00871 2 ILIIYAHPYPHHSHANKRMLEQAR 25 (176)
T ss_pred EEEEEcCCCCccChHHHHHHHHHH
Confidence 899999999874446666666555
No 247
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=22.67 E-value=6.5e+02 Score=23.72 Aligned_cols=79 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHhCC-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC----------C-----CC---ccc
Q 026131 59 TINYLTSRR-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF----------Q-----DG---FDK 119 (243)
Q Consensus 59 ti~~~~~~G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~----------~-----d~---~~~ 119 (243)
++..+.++| .+|+.+++--|..+ .-.+++++-|..+|+ .++++.|..+- + .| ..+
T Consensus 13 ~l~~L~e~~~~~Via~~aDlGq~~----~d~~~i~~kA~~~Ga--~~~~vvD~r~ef~~~~i~~aI~anA~Yeg~YpL~t 86 (388)
T PF00764_consen 13 ILKWLKEEGGYEVIAVTADLGQPD----EDLEAIEEKALKLGA--SKHIVVDARDEFAEDYIFPAIKANALYEGRYPLST 86 (388)
T ss_dssp HHHHHHHTTTEEEEEEEEESSST-----S-HHHHHHHHHHHT---SEEEEEE-HHHHHHHTHHHHHHTT--BTTTB--CC
T ss_pred HHHHHHhhcCceEEEEEEECCCcH----HHHHHHHHHHHhcCC--ceeeecchHHHHHHHHHHHHHHHHHHhCCCccccc
Confidence 456777788 88888888888752 223455566778898 57777775431 0 01 001
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEE
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLII 143 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~ 143 (243)
.....-+++.+.++.++.+.+.|.
T Consensus 87 sl~RplIa~~~v~~A~~~ga~~va 110 (388)
T PF00764_consen 87 SLARPLIAKKLVEVAREEGADAVA 110 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHT-SEEE
T ss_pred cchHHHHHHHHHHHHHHcCCeEEe
Confidence 123346788888898999999863
No 248
>PRK09492 treR trehalose repressor; Provisional
Probab=22.58 E-value=5e+02 Score=22.33 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=52.0
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 59 TINYLTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
....+.++|++ .+.+++.+.. ......|.+..+++++..|++. .. ...+ ++.+...+.+.++++ .
T Consensus 166 a~~~L~~~G~~-~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~-~~~~--------~~~~~~~~~~~~~l~-~ 231 (315)
T PRK09492 166 LMQRLYDQGHR-HISYLGVDHSDVTTGKRRHQAYLAFCKQHKLTP---VA-ALGG--------LSMQSGYELVAKVLT-P 231 (315)
T ss_pred HHHHHHHcCCC-eEEEEcCCcccchhHHHHHHHHHHHHHHcCCCc---ee-ecCC--------CCchHHHHHHHHHhh-c
Confidence 34566678875 3444442221 2234678899999999999842 11 1111 222333445555555 3
Q ss_pred CCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEE
Q 026131 138 SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~ 177 (243)
+||.|++.+ | ..+..+.+++++.+..++.+
T Consensus 232 ~~~ai~~~~--------D--~~A~g~~~al~~~g~~disv 261 (315)
T PRK09492 232 ETTALVCAT--------D--TLALGASKYLQEQGRDDIQV 261 (315)
T ss_pred CCCEEEEcC--------c--HHHHHHHHHHHHcCCCceEE
Confidence 799999862 3 23444556665544444433
No 249
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=22.32 E-value=4.2e+02 Score=22.97 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 59 TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
...+|.++|++=-+.+++..........|.+-.++|++-.|++.+...... .+ ++.+.-.+.+.+++++.
T Consensus 109 a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~-~~--------~~~~~g~~~~~~ll~~~- 178 (279)
T PF00532_consen 109 ATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFE-GD--------FDYESGYEAARELLESH- 178 (279)
T ss_dssp HHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEE-SS--------SSHHHHHHHHHHHHHTS-
T ss_pred HHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccc-cC--------CCHHHHHHHHHHHHhhC-
Confidence 445566788642024444333333567788899999999998543333322 11 13344556667777765
Q ss_pred CC--EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 139 ID--LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 139 Pd--~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
|+ .|++.+ | ..+..+..+++..+
T Consensus 179 p~idai~~~n--------d--~~A~ga~~~l~~~g 203 (279)
T PF00532_consen 179 PDIDAIFCAN--------D--MMAIGAIRALRERG 203 (279)
T ss_dssp TT-SEEEESS--------H--HHHHHHHHHHHHTT
T ss_pred CCCEEEEEeC--------H--HHHHHHHHHHHHcC
Confidence 77 898862 2 34445556665543
No 250
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=22.15 E-value=6.5e+02 Score=23.46 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=53.0
Q ss_pred HHHHHHhCCCcEEEEEEeCCCCC---------CchHHHH-------HHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 026131 59 TINYLTSRRHNLHILCMSNGNAD---------GMGNIRK-------DELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~~---------~~~~~R~-------~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~ 122 (243)
.|....+.+.+|..|++-+.+.- ..+..|. +|+.+.++.+|+ .+.++. |
T Consensus 18 aL~~A~~~~~~vl~vfi~dp~~~~~~~~~~~~~~~~~r~~Fl~esL~~L~~~L~~~g~---~L~v~~------G------ 82 (429)
T TIGR02765 18 ALYKASSSSDTLIPLYCFDPRQFKLTHFFGFPKTGPARGKFLLESLKDLRTSLRKLGS---DLLVRS------G------ 82 (429)
T ss_pred HHHHHHhcCCeEEEEEEECchHhccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCC---CeEEEe------C------
Confidence 34445556667888877775321 1233333 677788888898 344432 1
Q ss_pred hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhh
Q 026131 123 HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~ 169 (243)
+..+.|.+++++.+.+.|++.. +.-++.+.--+.+.++++.
T Consensus 83 --~~~~vl~~L~~~~~~~~V~~~~----~~~~~~~~rd~~v~~~l~~ 123 (429)
T TIGR02765 83 --KPEDVLPELIKELGVRTVFLHQ----EVGSEEKSVERLLQQALAR 123 (429)
T ss_pred --CHHHHHHHHHHHhCCCEEEEec----cCCHHHHHHHHHHHHHHHh
Confidence 1134566777888999998862 2344455555556555543
No 251
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=22.03 E-value=3.3e+02 Score=21.36 Aligned_cols=9 Identities=22% Similarity=0.674 Sum_probs=4.6
Q ss_pred CCCcEEEEE
Q 026131 66 RRHNLHILC 74 (243)
Q Consensus 66 ~G~~V~vv~ 74 (243)
.|++|.++.
T Consensus 29 ~g~~v~v~~ 37 (229)
T cd01635 29 RGHEVEVVA 37 (229)
T ss_pred cCCeEEEEE
Confidence 355555544
No 252
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=21.88 E-value=1e+02 Score=21.95 Aligned_cols=21 Identities=10% Similarity=0.482 Sum_probs=17.0
Q ss_pred chHHHHHHHHHHHHHHHHHHh
Q 026131 2 SWLLVIVSTIVVWVASLFKIL 22 (243)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ 22 (243)
-|.+.++|+.++++|.+.|.+
T Consensus 32 FW~lSl~Gs~lll~Y~i~r~D 52 (72)
T PF07578_consen 32 FWYLSLIGSLLLLIYAIIRKD 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 489999999998888776643
No 253
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=21.85 E-value=2e+02 Score=22.97 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
.++.+.|.++|++++||.+..=++
T Consensus 44 ~~I~~~l~~li~~~~P~~vaiE~~ 67 (149)
T PF02075_consen 44 KEIYEELEELIEEYNPDEVAIEEI 67 (149)
T ss_dssp HHHHHHHHHHHHHH--SEEEEEE-
T ss_pred HHHHHHHHHHHHhhCCCEEEeehh
Confidence 467888999999999999887543
No 254
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.51 E-value=2.1e+02 Score=21.46 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=36.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCC-CC-CchHHHHHHHHH-HHHHcCCCCCcEEE
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGN-AD-GMGNIRKDELHR-ACAVLKIPLEQVKV 107 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~-~~-~~~~~R~~E~~~-A~~~LGv~~~~~~~ 107 (243)
......++|.-|||.. |.+|| ...++.++.++... .+ +..+.-.+++.+ ..+.||++++++++
T Consensus 33 gkPe~~~~v~~~~~~~-m~f~g-------~~~p~a~v~i~~~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I 98 (116)
T PTZ00397 33 GKPLSYIMSGYDYQKH-MRFGG-------SHDGCCFVRVTSIGGISRSNNSSIAAAITKILASHLKVKSERVYI 98 (116)
T ss_pred CCChHHEEEEEeCCce-EEECC-------CCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 3344589999997765 44553 33466777777432 22 112222334433 35569999988854
No 255
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=21.50 E-value=4.3e+02 Score=22.46 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=15.6
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC
Q 026131 59 TINYLTSRRHNLHILCMSNGNA 80 (243)
Q Consensus 59 ti~~~~~~G~~V~vv~lT~G~~ 80 (243)
....+.+.|++|.+++.+.++.
T Consensus 23 l~~~L~~~g~~v~v~~~~~~~~ 44 (374)
T cd03817 23 LAEELEKRGHEVYVVAPSYPGA 44 (374)
T ss_pred HHHHHHHcCCeEEEEeCCCCCC
Confidence 4455667899999888766543
No 256
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=21.46 E-value=5.1e+02 Score=21.97 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=24.7
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.+.|+..|+| +...+..+.. ... ... +.+.+.+++++||++++.
T Consensus 42 ~~~A~~~gIp---~~~~~~~~~~--~~~-~~~----~~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 42 AEYARENGIP---VLVYPKTKGE--PDG-LSP----DELVDALRGAGVDFVLLA 85 (207)
T ss_pred HHHHHHhCCC---EEEeccccCC--Ccc-cch----HHHHHHHHhcCCCEEEEe
Confidence 4566778994 4444432211 011 122 234566788899999986
No 257
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.34 E-value=6e+02 Score=22.79 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 66 RRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 66 ~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
.|....+.++--|+.. .....|.+ .++|+.+|+ ++....+|.. .+.+++.+.|.++-+.-+.|=|+.
T Consensus 28 ~g~~P~Laii~vgdd~as~~Yv~~k--~k~a~~~Gi---~~~~~~l~~~-------~~~~~l~~~I~~lN~D~~V~GIlv 95 (281)
T PRK14183 28 KNIVPGLAVILVGDDPASHTYVKMK--AKACDRVGI---YSITHEMPST-------ISQKEILETIAMMNNNPNIDGILV 95 (281)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHHhCCCccCeEEE
Confidence 4666767666666542 33344433 578899999 4555566541 245677777777766666677887
Q ss_pred eCCCCCCCCchHHH
Q 026131 145 FDNYGVSGHCNHRD 158 (243)
Q Consensus 145 ~d~~g~d~H~DH~~ 158 (243)
+-|.. .|.|-..
T Consensus 96 q~PlP--~~i~~~~ 107 (281)
T PRK14183 96 QLPLP--KHIDTTK 107 (281)
T ss_pred eCCCC--CCCCHHH
Confidence 74433 4666444
No 258
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.29 E-value=4.7e+02 Score=21.52 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=38.3
Q ss_pred hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 026131 65 SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (243)
Q Consensus 65 ~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (243)
++|.+ .+++++..........|.+.+.++++..|++.... ...+.+ ++.++..+.+.+++++. .|+.|+
T Consensus 112 ~~g~~-~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~l~~~~~~~ai~ 181 (267)
T cd06284 112 SLGHR-RIALITGPRDNPLARDRLEGYRQALAEAGLPADEE-LIQEGD--------FSLESGYAAARRLLALPDRPTAIF 181 (267)
T ss_pred HcCCc-eEEEEcCCccchhHHHHHHHHHHHHHHcCCCCCcc-eEEeCC--------CChHHHHHHHHHHHhCCCCCcEEE
Confidence 45543 34444432222345678888888888888632111 111111 22334456666777654 578888
Q ss_pred ee
Q 026131 144 TF 145 (243)
Q Consensus 144 t~ 145 (243)
+.
T Consensus 182 ~~ 183 (267)
T cd06284 182 CF 183 (267)
T ss_pred Ec
Confidence 87
No 259
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=21.25 E-value=3.9e+02 Score=25.19 Aligned_cols=59 Identities=7% Similarity=0.019 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...-.+|....++.+|+ +++....|.-+.++....--..++.+.+++.+. .+.++.-+|
T Consensus 52 ~~~a~~ei~~~a~~~~~--~~ivlypyAHLss~la~P~~A~~vl~~le~~~~-~~~eV~raP 110 (387)
T PRK14938 52 LNEAINDILDVYSKVKA--ASVVIYPYAHLSSNLANPDTAIKVLESLENLLK-DKVKVYRAP 110 (387)
T ss_pred HHHHHHHHHHHHHhcCC--ceEEEecchhcccccCChHHHHHHHHHHHHHHh-cCceEEEcC
Confidence 33445677777777777 566666664433222110011244444544443 455665555
No 260
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=21.21 E-value=3.7e+02 Score=22.67 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHH--hcCCCEEEee
Q 026131 124 KSLAKIVEEEVV--NCSIDLIITF 145 (243)
Q Consensus 124 ~~l~~~l~~~i~--~~~Pd~V~t~ 145 (243)
......+.+.++ ..+||+|+++
T Consensus 77 ~~~~~~~~~~l~~~~~~~dii~~~ 100 (377)
T cd03798 77 LLAARALLKLLKLKRFRPDLIHAH 100 (377)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEe
Confidence 355666777887 8889998887
No 261
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=21.14 E-value=5e+02 Score=21.79 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=37.9
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (243)
-.+++++..........|.+..+++++..|++ +. .... ..|+.+...+.+.+++++. +||.|++
T Consensus 126 ~~i~~l~g~~~~~~~~~R~~g~~~~~~~~~~~---~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~~i~~ 190 (268)
T cd06306 126 AKVAWFPGPKGAGWVKAVEKGFRDALAGSAIE---IS--AIKY------GDTGKEVQRKLVEEALEAHPDIDYIVG 190 (268)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhhcCcE---Ee--eecc------CCccHHHHHHHHHHHHHhCCCcCEEee
Confidence 45555653333335677888889999888772 21 1111 1134455567777777664 4788875
No 262
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=20.99 E-value=1.5e+02 Score=27.65 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHcCCCCCcEEEccCCCCC---CCccccCChHHHHHHHHHHHHhcCCCEEEe
Q 026131 92 HRACAVLKIPLEQVKVLDLVDFQ---DGFDKLWNHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~pd~~---d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
+..++.+|+++.++..++.-|.. ++++.. .. .+.++.+..+++.+||.|+.
T Consensus 147 ~~v~a~mgLsPadvrn~dltd~~Gaa~~~d~l-~p-kl~rRfek~~~Q~rp~~vVi 200 (402)
T COG3598 147 EPVRARMGLSPADVRNMDLTDVSGAADESDVL-SP-KLYRRFEKILEQKRPDFVVI 200 (402)
T ss_pred HHHHHHcCCChHhhhheeccccccCCCccccc-cH-HHHHHHHHHHHHhCCCeEEE
Confidence 46788899998888877765542 223322 22 67788888889999998875
No 263
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=20.96 E-value=5.6e+02 Score=22.32 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCCEEEee
Q 026131 128 KIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~ 145 (243)
+.+.+.+++.+||+|++-
T Consensus 70 ~~~~~~l~~~~~d~vV~D 87 (279)
T TIGR03590 70 LELINLLEEEKFDILIVD 87 (279)
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 346666677788877663
No 264
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=20.94 E-value=5.8e+02 Score=22.50 Aligned_cols=84 Identities=14% Similarity=0.097 Sum_probs=43.6
Q ss_pred EEEEecCchhhhcchHHHHHH-HHhCCCcEEE-------EEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC-
Q 026131 42 VLLVIAHPDDESMFFSPTINY-LTSRRHNLHI-------LCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD- 112 (243)
Q Consensus 42 vL~v~aHPDDE~l~~Ggti~~-~~~~G~~V~v-------v~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd- 112 (243)
.+.+.+|++++..-..-.+.. +.+.|.++.. ++.-.|+ |.. ..|++.++-. +++.+++..-
T Consensus 4 ~i~iv~~~~~~a~~~~~~l~~~l~~~g~~~~~~~~~~D~vi~lGGD----GT~-----L~a~~~~~~~-~~~pilgIn~~ 73 (264)
T PRK03501 4 NLFFFYKRDKELVEKVKPLKKIAEEYGFTVVDHPKNANIIVSIGGD----GTF-----LQAVRKTGFR-EDCLYAGISTK 73 (264)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHCCCEEEcCCCCccEEEEECCc----HHH-----HHHHHHhccc-CCCeEEeEecC
Confidence 466667888866544555665 4457766543 2222222 222 2233333210 1233444433
Q ss_pred CCCCccccCChHHHHHHHHHHHH
Q 026131 113 FQDGFDKLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 113 ~~d~~~~~~~~~~l~~~l~~~i~ 135 (243)
+.-|+.+.++.+++.+.+.++++
T Consensus 74 G~lGFL~~~~~~~~~~~l~~i~~ 96 (264)
T PRK03501 74 DQLGFYCDFHIDDLDKMIQAITK 96 (264)
T ss_pred CCCeEcccCCHHHHHHHHHHHHc
Confidence 44455555566788888877765
No 265
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=20.87 E-value=1.4e+02 Score=25.55 Aligned_cols=28 Identities=11% Similarity=0.087 Sum_probs=23.5
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
++.++...+.++++++.||+|..++-.+
T Consensus 80 ~E~~LL~~f~~~i~~~DPDii~GyNi~~ 107 (231)
T cd05778 80 SELELFEELIDLVRRFDPDILSGYEIQR 107 (231)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEecccc
Confidence 4568999999999999999999985433
No 266
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=20.53 E-value=1.7e+02 Score=17.96 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=14.5
Q ss_pred Cch-HHHHHHHHH-HHHHHHHHHh
Q 026131 1 MSW-LLVIVSTIV-VWVASLFKIL 22 (243)
Q Consensus 1 ~~~-~~~~~~~~~-~~~~~~~~~~ 22 (243)
|-| +++++++++ +....+++|.
T Consensus 1 mD~RlliVl~Pil~A~~Wa~fNIg 24 (36)
T CHL00196 1 MDTRLLVIAAPVLAAASWALFNIG 24 (36)
T ss_pred CChhHHHHHHHHHHHHHHHHHHhH
Confidence 556 778888887 5555555553
No 267
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=20.47 E-value=5.6e+02 Score=23.24 Aligned_cols=80 Identities=13% Similarity=0.117 Sum_probs=43.8
Q ss_pred EEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEccC-CCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 71 HILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLDL-VDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 71 ~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~-pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.++|+|+. +.....-..=+.+.++.+|+ ++..... || +.+++.+.+.+.+++ ..|+|+|.
T Consensus 161 rv~II~TG~Ev~~G~i~D~~~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~I~~ai~~~~~~-g~DlIItT- 226 (312)
T cd03522 161 RVGLIVTGSEVYGGRIEDKFGPVLRARLAALGV---ELVEQVIVPH---------DEAAIAAAIAEALEA-GAELLILT- 226 (312)
T ss_pred EEEEEEcCCcCCCCcEEEhHHHHHHHHHHHCCC---EEEEEEEcCC---------CHHHHHHHHHHHhcC-CCCEEEEe-
Confidence 4566777753 12212222334556777888 3333222 22 345778888887654 58999996
Q ss_pred CCCCCCCchHHHHHHHHHHH
Q 026131 147 NYGVSGHCNHRDVHHGIWSY 166 (243)
Q Consensus 147 ~~g~d~H~DH~~~~~av~~a 166 (243)
|+.+--+.-.+.+++.++
T Consensus 227 --GGtsvg~~D~tp~Ai~~~ 244 (312)
T cd03522 227 --GGASVDPDDVTPAAIRAA 244 (312)
T ss_pred --CCcccCCcchHHHHHHhc
Confidence 444444444555555543
No 268
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=20.28 E-value=6.3e+02 Score=22.61 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
-.+.+++++...+.|-|+|.|+|.
T Consensus 106 s~~~~a~ll~~~g~d~vit~DlHs 129 (308)
T TIGR01251 106 SAKLVANLLETAGADRVLTVDLHS 129 (308)
T ss_pred hHHHHHHHHHHcCCCEEEEecCCh
Confidence 356677888888888888888754
No 269
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=20.22 E-value=5.4e+02 Score=21.83 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCC-----CchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 58 PTINYLTSRRHNLHILCMSNGNAD-----GMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~~-----~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
+=+..+.+.|.++..|....+... ..+..=-++..++++.||.|....++++..+
T Consensus 56 ~e~~~i~~~Gl~~~pIyq~~~~~~~~~~~~~G~~dA~~A~~~A~~lG~p~gs~IYfavD~ 115 (212)
T cd06418 56 TELETITAAGLKVFPIYQGGGYSLDYFGYEQGVKDARDAVAAARALGFPPGTIIYFAVDF 115 (212)
T ss_pred HHHHHHHHCCCEEEEEEECCCccccccCHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeec
Confidence 345556667777777776654432 1344445666777888999987888877543
No 270
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=20.15 E-value=8.4e+02 Score=26.50 Aligned_cols=119 Identities=11% Similarity=0.044 Sum_probs=75.6
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCc--------------------hHHHHHHHHHHHHHc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGM--------------------GNIRKDELHRACAVL 98 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~--------------------~~~R~~E~~~A~~~L 98 (243)
.+++++++-=-|=--+|.||+...+ ++|.+|.++|+-|..++.- ...+++.+-.-+...
T Consensus 951 ~~sv~~~~GDG~~~diG~~~l~~~~-~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176 951 KKSVWIIGGDGWAYDIGYGGLDHVL-ASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred cceeEEEecchhhhccCccchHHHH-HcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence 4578888877666678888887765 4789999999887654210 133455555555556
Q ss_pred CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCC-CCCchHHHHHHHHHHHHhh
Q 026131 99 KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGV-SGHCNHRDVHHGIWSYLNG 169 (243)
Q Consensus 99 Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~-d~H~DH~~~~~av~~a~~~ 169 (243)
|.+ ++-.- ... .+..++.+.+.+.++.-.|..|..+.|-.. ....|-..+.+..+.|++.
T Consensus 1030 g~~----yvA~~-----~~~--~~~~~~~~~~~~A~~~~G~s~i~~~~pC~~~g~~~~~~~~~~~~k~av~~ 1090 (1165)
T TIGR02176 1030 GYV----YVAQV-----SMG--ANMQQTLKAFREAEAYDGPSIVIAYSPCINHGIKKGMGKSQAEQKTAVES 1090 (1165)
T ss_pred CCC----EEEEE-----ecc--cCHHHHHHHHHHHHcCCCCEEEEEECCCcccCcCCCcchHHHHHHHHHHc
Confidence 652 22210 000 145688899999988889999998877542 1233545556666666654
No 271
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=20.11 E-value=7.3e+02 Score=23.30 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=46.0
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC-CCCC--c-----ccc----------CC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD-FQDG--F-----DKL----------WN 122 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd-~~d~--~-----~~~----------~~ 122 (243)
..+.+.|.+|..+++-.|.. ..-.++.++.|+.+|++ .+++.+..+ +... + +.. ..
T Consensus 17 ~~l~e~g~~V~av~id~Gq~----~~e~~~a~~~a~~lGi~--~~~viD~~~ef~~~~~~~~i~~n~~y~~~Y~l~t~la 90 (394)
T TIGR00032 17 KWLREKGYEVIAYTADVGQP----EEDIDAIPEKALEYGAE--NHYTIDAREEFVKDYGFAAIQANAFYEGTYPLSTALA 90 (394)
T ss_pred HHHHHcCCEEEEEEEecCCC----hHHHHHHHHHHHHhCCC--eEEEEeCHHHHHHhhchhhhcCCccccCcccccchhh
Confidence 33445688999998887742 12234456778899983 455665531 1000 0 000 01
Q ss_pred hHHHHHHHHHHHHhcCCCEEEe
Q 026131 123 HKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
...+.+.+.++.++.+.+.|..
T Consensus 91 R~li~~~l~~~A~~~G~~~Ia~ 112 (394)
T TIGR00032 91 RPLIAKKLVEAAKKEGANAVAH 112 (394)
T ss_pred HHHHHHHHHHHHHHcCCCEEEE
Confidence 2356677888888899998764
No 272
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=20.09 E-value=1.2e+02 Score=24.99 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=23.5
Q ss_pred CcEEEEecCchhhhcchHHHHH-----HHHhCC-CcEEEEEEeCC
Q 026131 40 KNVLLVIAHPDDESMFFSPTIN-----YLTSRR-HNLHILCMSNG 78 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~-----~~~~~G-~~V~vv~lT~G 78 (243)
+++|+|.+||+-+- +....|+ .+.+.| .+|.++-+-.-
T Consensus 1 mkiLvI~asp~~~~-S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINASPRPEG-SFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE--SSTTT-SHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcCCCCcc-CHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 58999999999854 4444443 333467 77877766654
Done!