Query 026131
Match_columns 243
No_of_seqs 210 out of 1478
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:18:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ixd_A LMBE-related protein; h 100.0 3.7E-36 1.3E-40 261.0 19.1 165 38-235 2-182 (242)
2 1q74_A 1D-MYO-inosityl 2-aceta 100.0 3.1E-36 1.1E-40 269.4 17.2 193 39-235 4-251 (303)
3 3dfi_A Pseudoaglycone deacetyl 100.0 5.6E-36 1.9E-40 263.7 17.7 187 37-235 5-233 (270)
4 1uan_A Hypothetical protein TT 100.0 1E-35 3.4E-40 255.9 18.0 161 40-233 2-178 (227)
5 3dff_A Teicoplanin pseudoaglyc 100.0 1E-35 3.5E-40 262.5 16.9 186 38-235 6-236 (273)
6 3ih5_A Electron transfer flavo 93.1 0.29 9.9E-06 40.8 7.7 88 40-145 4-98 (217)
7 3tsa_A SPNG, NDP-rhamnosyltran 88.3 2.5 8.6E-05 36.8 9.5 35 40-74 2-36 (391)
8 1efv_A Electron transfer flavo 87.7 4.5 0.00016 35.4 10.7 90 41-145 3-93 (315)
9 2iw1_A Lipopolysaccharide core 85.3 3.8 0.00013 34.9 8.9 84 40-147 1-89 (374)
10 1f0k_A MURG, UDP-N-acetylgluco 85.1 3.8 0.00013 35.0 8.7 86 40-146 7-104 (364)
11 3otg_A CALG1; calicheamicin, T 84.5 2.4 8.2E-05 37.1 7.3 39 37-75 18-56 (412)
12 3okp_A GDP-mannose-dependent a 83.9 10 0.00035 32.3 11.1 89 38-146 3-94 (394)
13 1vgv_A UDP-N-acetylglucosamine 83.4 4.4 0.00015 34.9 8.5 91 40-145 1-93 (384)
14 4fzr_A SSFS6; structural genom 83.2 4.2 0.00014 35.5 8.3 40 36-75 12-51 (398)
15 3ia7_A CALG4; glycosysltransfe 82.8 4.5 0.00015 35.0 8.3 35 40-74 5-39 (402)
16 1v4v_A UDP-N-acetylglucosamine 82.5 6.4 0.00022 33.8 9.2 92 40-145 6-98 (376)
17 3oti_A CALG3; calicheamicin, T 81.7 9.3 0.00032 33.3 10.0 39 37-75 18-56 (398)
18 3rsc_A CALG2; TDP, enediyne, s 76.6 9.4 0.00032 33.3 8.4 37 38-74 19-55 (415)
19 3fet_A Electron transfer flavo 73.8 20 0.00069 28.1 8.8 74 39-145 3-76 (166)
20 1o97_C Electron transferring f 73.7 9.7 0.00033 32.4 7.4 81 48-146 36-120 (264)
21 4gi5_A Quinone reductase; prot 73.0 3 0.0001 36.0 4.0 40 36-77 19-63 (280)
22 1efp_B ETF, protein (electron 72.8 33 0.0011 28.8 10.5 82 48-146 36-121 (252)
23 2x6q_A Trehalose-synthase TRET 72.2 3.3 0.00011 36.2 4.2 38 36-78 37-81 (416)
24 1o97_D Electron transferring f 71.6 14 0.00048 32.3 8.1 84 42-145 3-94 (320)
25 4hg6_A Cellulose synthase subu 71.0 43 0.0015 32.8 12.3 62 39-100 139-214 (802)
26 1efv_B Electron transfer flavo 70.5 31 0.0011 29.0 9.8 81 48-146 39-124 (255)
27 3beo_A UDP-N-acetylglucosamine 69.5 16 0.00055 31.0 8.0 21 125-145 82-102 (375)
28 2iyf_A OLED, oleandomycin glyc 69.5 29 0.00098 30.3 9.8 35 40-74 8-42 (430)
29 3ot5_A UDP-N-acetylglucosamine 67.0 25 0.00084 31.3 8.9 92 41-145 29-121 (403)
30 3dzc_A UDP-N-acetylglucosamine 66.9 48 0.0016 29.2 10.8 92 40-145 26-118 (396)
31 3s2u_A UDP-N-acetylglucosamine 66.9 19 0.00063 31.4 7.9 18 128-145 82-99 (365)
32 3o74_A Fructose transport syst 66.7 22 0.00077 28.6 8.0 96 62-179 114-213 (272)
33 3k4h_A Putative transcriptiona 66.3 19 0.00065 29.4 7.6 74 62-145 125-199 (292)
34 3d8u_A PURR transcriptional re 65.6 39 0.0013 27.2 9.3 73 63-145 115-188 (275)
35 2iuy_A Avigt4, glycosyltransfe 65.4 19 0.00065 30.3 7.5 19 129-147 75-93 (342)
36 3e3m_A Transcriptional regulat 63.2 69 0.0024 27.1 11.0 76 61-145 180-257 (355)
37 2o20_A Catabolite control prot 63.0 26 0.0009 29.5 8.0 73 62-145 174-246 (332)
38 2pjk_A 178AA long hypothetical 62.7 12 0.00042 29.7 5.4 65 69-145 15-88 (178)
39 3kbq_A Protein TA0487; structu 62.3 23 0.00079 28.1 6.9 80 71-168 5-89 (172)
40 1efp_A ETF, protein (electron 61.1 43 0.0015 29.0 9.1 61 67-145 29-89 (307)
41 3auf_A Glycinamide ribonucleot 60.3 71 0.0024 26.3 10.3 87 38-146 21-109 (229)
42 3qk7_A Transcriptional regulat 60.3 31 0.0011 28.4 7.8 74 62-145 120-194 (294)
43 1meo_A Phosophoribosylglycinam 59.7 17 0.00057 29.8 5.8 44 93-146 44-87 (209)
44 2h0a_A TTHA0807, transcription 59.6 36 0.0012 27.4 8.0 73 62-145 108-187 (276)
45 3jvd_A Transcriptional regulat 59.2 41 0.0014 28.4 8.6 71 62-145 168-238 (333)
46 3h75_A Periplasmic sugar-bindi 59.0 75 0.0026 26.8 10.3 94 68-181 144-241 (350)
47 3hcw_A Maltose operon transcri 58.8 38 0.0013 27.9 8.1 95 62-179 125-226 (295)
48 3av3_A Phosphoribosylglycinami 57.3 76 0.0026 25.7 10.1 84 40-145 4-89 (212)
49 2qu7_A Putative transcriptiona 56.7 37 0.0013 27.7 7.7 74 62-145 116-194 (288)
50 2fvy_A D-galactose-binding per 56.1 56 0.0019 26.7 8.7 86 66-171 138-226 (309)
51 3gv0_A Transcriptional regulat 56.0 48 0.0016 27.1 8.3 98 62-179 121-222 (288)
52 3tqq_A Methionyl-tRNA formyltr 54.6 53 0.0018 28.4 8.5 85 39-146 2-88 (314)
53 3g85_A Transcriptional regulat 53.6 30 0.001 28.2 6.6 53 84-145 142-195 (289)
54 2rgy_A Transcriptional regulat 53.3 57 0.0019 26.6 8.3 74 62-145 122-196 (290)
55 2c2x_A Methylenetetrahydrofola 53.1 66 0.0023 27.6 8.7 89 60-162 23-112 (281)
56 1jkx_A GART;, phosphoribosylgl 52.8 85 0.0029 25.5 9.1 45 92-146 43-87 (212)
57 3l6u_A ABC-type sugar transpor 52.8 89 0.003 25.2 9.4 89 70-179 136-226 (293)
58 1mkz_A Molybdenum cofactor bio 52.2 45 0.0015 26.1 7.1 73 70-156 11-86 (172)
59 2iya_A OLEI, oleandomycin glyc 51.7 48 0.0016 28.9 7.9 35 39-74 12-47 (424)
60 3ha2_A NADPH-quinone reductase 51.1 20 0.00067 28.4 4.8 38 40-77 1-38 (177)
61 2l82_A Designed protein OR32; 49.8 77 0.0026 23.5 9.5 77 39-138 77-153 (162)
62 3dbi_A Sugar-binding transcrip 49.6 54 0.0019 27.5 7.7 76 60-145 173-249 (338)
63 3gyb_A Transcriptional regulat 49.1 85 0.0029 25.2 8.7 71 62-145 112-183 (280)
64 1dbq_A Purine repressor; trans 49.0 47 0.0016 26.9 7.0 74 62-145 120-194 (289)
65 2ywr_A Phosphoribosylglycinami 48.8 1.1E+02 0.0036 24.9 10.5 86 40-146 2-88 (216)
66 2pbq_A Molybdenum cofactor bio 48.3 43 0.0015 26.3 6.4 33 122-156 52-85 (178)
67 3h5t_A Transcriptional regulat 48.1 1.2E+02 0.0041 25.6 9.8 55 83-145 220-275 (366)
68 3l49_A ABC sugar (ribose) tran 47.8 1.1E+02 0.0037 24.6 9.7 99 62-179 117-222 (291)
69 3bbl_A Regulatory protein of L 47.5 52 0.0018 26.8 7.1 52 84-145 140-195 (287)
70 3k9c_A Transcriptional regulat 47.1 98 0.0034 25.1 8.8 72 62-145 120-192 (289)
71 3q0i_A Methionyl-tRNA formyltr 47.0 59 0.002 28.2 7.6 85 39-146 7-93 (318)
72 3miz_A Putative transcriptiona 46.3 31 0.0011 28.4 5.5 93 62-171 125-220 (301)
73 3clk_A Transcription regulator 46.2 71 0.0024 26.0 7.8 74 62-145 119-192 (290)
74 1di6_A MOGA, molybdenum cofact 45.9 42 0.0014 27.0 6.0 33 122-156 50-83 (195)
75 3c3k_A Alanine racemase; struc 45.9 89 0.003 25.3 8.3 71 62-145 118-191 (285)
76 3lfh_A Manxa, phosphotransfera 45.7 60 0.002 24.7 6.6 67 69-150 3-73 (144)
77 1jlj_A Gephyrin; globular alph 45.5 47 0.0016 26.5 6.2 24 122-145 62-85 (189)
78 3p2o_A Bifunctional protein fo 45.5 96 0.0033 26.6 8.5 88 60-161 24-112 (285)
79 1w1z_A Delta-aminolevulinic ac 45.4 75 0.0026 27.9 7.8 87 58-146 20-123 (328)
80 1fmt_A Methionyl-tRNA FMet for 45.4 90 0.0031 26.9 8.5 85 39-146 3-89 (314)
81 3ew8_A HD8, histone deacetylas 45.1 11 0.00037 34.2 2.5 29 125-155 243-271 (388)
82 1uuy_A CNX1, molybdopterin bio 45.1 45 0.0015 25.8 6.0 41 122-166 55-96 (167)
83 4ds3_A Phosphoribosylglycinami 45.0 1.2E+02 0.0042 24.6 8.8 44 93-146 51-94 (209)
84 3kjx_A Transcriptional regulat 45.0 82 0.0028 26.5 8.2 54 83-145 200-254 (344)
85 3iuu_A MLRC-like, putative met 44.8 1.8E+02 0.0062 26.9 10.8 104 56-167 48-177 (495)
86 1y5e_A Molybdenum cofactor bio 44.5 65 0.0022 24.9 6.9 72 71-156 15-89 (169)
87 3h5o_A Transcriptional regulat 44.3 1.3E+02 0.0044 25.1 9.3 74 61-145 171-246 (339)
88 3kke_A LACI family transcripti 44.2 58 0.002 26.8 7.0 74 62-145 125-204 (303)
89 1jye_A Lactose operon represso 44.2 1.1E+02 0.0037 25.8 8.9 51 84-145 194-245 (349)
90 4a69_A Histone deacetylase 3,; 43.9 8.5 0.00029 34.7 1.6 29 125-155 235-263 (376)
91 4b4u_A Bifunctional protein fo 43.5 75 0.0026 27.6 7.6 81 67-161 51-132 (303)
92 3ksm_A ABC-type sugar transpor 43.4 1.2E+02 0.0041 24.0 9.1 92 67-180 126-220 (276)
93 3m9w_A D-xylose-binding peripl 43.2 1.2E+02 0.004 24.9 8.7 93 62-171 116-211 (313)
94 2is8_A Molybdopterin biosynthe 42.4 27 0.00091 27.1 4.2 40 122-165 46-86 (164)
95 1pdo_A Mannose permease; phosp 42.4 70 0.0024 23.8 6.5 66 70-150 2-70 (135)
96 3gxh_A Putative phosphatase (D 41.8 1.1E+02 0.0038 23.0 9.6 81 43-143 22-102 (157)
97 1c3p_A Protein (HDLP (histone 41.3 24 0.00084 31.5 4.2 27 126-154 235-261 (375)
98 3g1w_A Sugar ABC transporter; 40.7 1.4E+02 0.0049 24.1 9.1 73 62-145 119-194 (305)
99 1zl0_A Hypothetical protein PA 40.6 1.2E+02 0.0041 26.2 8.5 63 36-100 14-81 (311)
100 4fe7_A Xylose operon regulator 40.4 1.8E+02 0.0062 25.2 10.9 76 61-145 132-210 (412)
101 2bln_A Protein YFBG; transfera 40.4 59 0.002 28.0 6.5 82 41-146 2-83 (305)
102 2hsg_A Glucose-resistance amyl 40.4 57 0.002 27.3 6.4 73 62-145 171-246 (332)
103 3rfo_A Methionyl-tRNA formyltr 40.3 1.1E+02 0.0038 26.4 8.3 85 39-146 4-90 (317)
104 3cs3_A Sugar-binding transcrip 39.8 1E+02 0.0034 24.8 7.6 50 84-145 133-184 (277)
105 1qpz_A PURA, protein (purine n 39.6 68 0.0023 26.9 6.8 74 62-145 171-245 (340)
106 3gbv_A Putative LACI-family tr 39.6 1.1E+02 0.0038 24.7 7.9 75 62-145 127-207 (304)
107 2iks_A DNA-binding transcripti 39.6 79 0.0027 25.7 7.0 72 61-145 131-204 (293)
108 4e5s_A MCCFLIKE protein (BA_56 39.3 87 0.003 27.2 7.5 63 36-100 9-79 (331)
109 4af8_A Metacaspase MCA2; hydro 38.3 84 0.0029 28.0 7.3 55 91-145 119-174 (367)
110 2fn9_A Ribose ABC transporter, 37.5 1.5E+02 0.0052 23.8 8.5 91 67-178 128-221 (290)
111 3brq_A HTH-type transcriptiona 36.8 1E+02 0.0035 24.7 7.3 54 83-145 153-207 (296)
112 4fs3_A Enoyl-[acyl-carrier-pro 35.9 1.7E+02 0.006 23.6 10.9 88 37-145 4-93 (256)
113 4h1h_A LMO1638 protein; MCCF-l 35.5 1.1E+02 0.0037 26.4 7.5 63 36-100 9-79 (327)
114 3f2v_A General stress protein 35.3 36 0.0012 27.2 4.0 38 40-77 2-40 (192)
115 3d02_A Putative LACI-type tran 35.1 1.8E+02 0.006 23.5 9.9 87 49-145 107-196 (303)
116 2h3h_A Sugar ABC transporter, 35.0 1.8E+02 0.0062 23.7 8.7 67 67-145 122-189 (313)
117 2fep_A Catabolite control prot 34.6 60 0.002 26.5 5.5 53 84-145 149-202 (289)
118 1a4i_A Methylenetetrahydrofola 34.6 1.2E+02 0.004 26.3 7.4 87 60-160 24-115 (301)
119 3lm8_A Thiamine pyrophosphokin 34.4 1.9E+02 0.0064 23.5 8.5 89 53-163 28-116 (222)
120 3r3s_A Oxidoreductase; structu 33.7 2E+02 0.0069 23.7 10.1 86 38-145 48-135 (294)
121 1l6s_A Porphobilinogen synthas 33.7 87 0.003 27.4 6.3 87 58-146 14-117 (323)
122 3bil_A Probable LACI-family tr 33.4 1.6E+02 0.0056 24.7 8.2 71 62-145 178-248 (348)
123 1zz1_A Histone deacetylase-lik 33.2 25 0.00087 31.4 3.0 39 128-168 247-297 (369)
124 4hwg_A UDP-N-acetylglucosamine 32.3 96 0.0033 27.2 6.7 90 40-145 11-101 (385)
125 3egc_A Putative ribose operon 32.1 72 0.0025 25.9 5.5 73 62-145 119-193 (291)
126 1byk_A Protein (trehalose oper 31.9 1.2E+02 0.0041 23.9 6.8 95 60-178 107-202 (255)
127 3iwt_A 178AA long hypothetical 31.5 1.5E+02 0.0053 22.7 7.2 43 91-145 45-88 (178)
128 4a26_A Putative C-1-tetrahydro 31.1 1.3E+02 0.0043 26.0 7.0 87 60-160 26-115 (300)
129 3ipr_A PTS system, IIA compone 30.7 1.3E+02 0.0044 22.9 6.4 65 71-150 3-70 (150)
130 2dri_A D-ribose-binding protei 30.3 2E+02 0.0069 22.8 8.0 74 83-177 137-211 (271)
131 3v2g_A 3-oxoacyl-[acyl-carrier 30.1 2.2E+02 0.0077 23.1 9.4 86 37-145 29-116 (271)
132 2jjm_A Glycosyl transferase, g 30.0 1.6E+02 0.0053 25.0 7.6 22 125-146 86-107 (394)
133 3tla_A MCCF; serine protease, 30.0 79 0.0027 28.1 5.7 63 36-100 40-110 (371)
134 1z7e_A Protein aRNA; rossmann 29.9 1E+02 0.0034 29.1 6.8 82 41-146 2-83 (660)
135 2hma_A Probable tRNA (5-methyl 29.6 1.3E+02 0.0043 26.6 7.0 49 60-111 26-79 (376)
136 2vqm_A HD4, histone deacetylas 29.5 26 0.0009 31.7 2.5 27 126-154 267-293 (413)
137 1b0a_A Protein (fold bifunctio 29.4 1E+02 0.0035 26.5 6.1 86 60-159 23-110 (288)
138 3rfq_A Pterin-4-alpha-carbinol 29.3 79 0.0027 25.2 5.1 64 68-145 29-96 (185)
139 3max_A HD2, histone deacetylas 28.7 35 0.0012 30.5 3.1 29 125-155 234-262 (367)
140 1g8l_A Molybdopterin biosynthe 28.6 1.2E+02 0.0042 27.2 6.8 57 91-165 209-267 (411)
141 3rjz_A N-type ATP pyrophosphat 28.3 59 0.002 27.1 4.3 73 60-144 21-96 (237)
142 1w5q_A Delta-aminolevulinic ac 27.9 2E+02 0.0068 25.3 7.6 88 57-146 21-127 (337)
143 3kcq_A Phosphoribosylglycinami 27.7 1.9E+02 0.0066 23.4 7.3 39 93-146 52-90 (215)
144 3sr3_A Microcin immunity prote 27.1 1.1E+02 0.0037 26.7 6.0 63 36-100 10-80 (336)
145 3qi7_A Putative transcriptiona 27.0 2.9E+02 0.0098 24.5 8.8 41 61-101 149-190 (371)
146 3tb6_A Arabinose metabolism tr 26.9 96 0.0033 25.0 5.4 75 62-145 131-208 (298)
147 2pqp_A HD7A, histone deacetyla 26.6 34 0.0012 31.2 2.6 28 126-155 296-323 (421)
148 2hl0_A Threonyl-tRNA synthetas 26.5 94 0.0032 24.0 4.8 63 83-149 56-118 (143)
149 2rjo_A Twin-arginine transloca 26.5 2.7E+02 0.0092 22.9 8.4 83 49-145 116-204 (332)
150 3tem_A Ribosyldihydronicotinam 26.5 53 0.0018 26.8 3.6 37 39-77 1-42 (228)
151 4a5o_A Bifunctional protein fo 26.2 2.3E+02 0.008 24.2 7.8 86 60-159 25-112 (286)
152 1pv8_A Delta-aminolevulinic ac 26.1 1.4E+02 0.0049 26.1 6.4 87 58-146 14-120 (330)
153 2lpm_A Two-component response 25.7 1.5E+02 0.0051 21.6 5.7 56 37-110 6-61 (123)
154 3pzy_A MOG; ssgcid, seattle st 25.2 53 0.0018 25.5 3.2 21 124-145 53-73 (164)
155 3rih_A Short chain dehydrogena 25.1 2.9E+02 0.01 22.8 8.4 87 36-145 38-126 (293)
156 3l07_A Bifunctional protein fo 24.9 2E+02 0.0067 24.6 7.1 87 61-161 25-113 (285)
157 3tqr_A Phosphoribosylglycinami 24.6 2.8E+02 0.0096 22.4 9.6 44 93-146 48-91 (215)
158 3da8_A Probable 5'-phosphoribo 24.5 2.2E+02 0.0074 23.1 7.0 84 36-146 9-97 (215)
159 3ctp_A Periplasmic binding pro 24.2 62 0.0021 27.1 3.8 41 61-102 165-205 (330)
160 2vk2_A YTFQ, ABC transporter p 24.2 2.3E+02 0.008 22.9 7.4 74 62-145 119-198 (306)
161 3p9x_A Phosphoribosylglycinami 24.1 2.8E+02 0.0097 22.4 10.7 46 91-146 44-89 (211)
162 1nvm_A HOA, 4-hydroxy-2-oxoval 23.8 3.5E+02 0.012 23.2 11.0 77 57-145 123-199 (345)
163 2gek_A Phosphatidylinositol ma 23.6 74 0.0025 27.0 4.2 96 36-147 17-116 (406)
164 4amg_A Snogd; transferase, pol 23.4 1E+02 0.0035 26.2 5.1 38 36-74 19-57 (400)
165 1gud_A ALBP, D-allose-binding 23.3 2.9E+02 0.0099 22.1 8.1 89 62-171 124-216 (288)
166 1qgu_B Protein (nitrogenase mo 23.2 4.4E+02 0.015 24.2 11.1 85 36-145 357-441 (519)
167 3lft_A Uncharacterized protein 23.2 1.9E+02 0.0064 23.5 6.6 74 55-145 118-193 (295)
168 3men_A Acetylpolyamine aminohy 22.9 57 0.0019 29.1 3.3 28 127-156 280-307 (362)
169 1vl2_A Argininosuccinate synth 22.9 1.6E+02 0.0055 26.7 6.4 78 60-144 31-126 (421)
170 1h7n_A 5-aminolaevulinic acid 22.8 2.9E+02 0.0098 24.3 7.7 87 58-146 25-131 (342)
171 3mc3_A DSRE/DSRF-like family p 22.7 99 0.0034 22.8 4.3 41 38-78 14-57 (134)
172 1tjy_A Sugar transport protein 22.7 3.2E+02 0.011 22.4 8.8 70 66-145 126-196 (316)
173 3o38_A Short chain dehydrogena 22.6 2.9E+02 0.01 22.0 11.1 88 36-145 19-108 (266)
174 2ioy_A Periplasmic sugar-bindi 22.6 3E+02 0.01 22.0 8.5 95 62-177 115-212 (283)
175 2p10_A MLL9387 protein; putati 22.4 3.7E+02 0.013 23.0 8.9 73 58-145 154-232 (286)
176 2der_A TRNA-specific 2-thiouri 22.1 2E+02 0.0067 25.4 6.8 49 60-111 34-87 (380)
177 3k94_A Thiamin pyrophosphokina 22.1 2.4E+02 0.0082 22.9 6.9 34 128-164 83-116 (223)
178 3q9b_A Acetylpolyamine amidohy 22.0 53 0.0018 29.0 2.9 27 127-155 262-288 (341)
179 3l9w_A Glutathione-regulated p 22.0 96 0.0033 27.7 4.7 43 34-76 231-273 (413)
180 3bed_A PTS system, IIA compone 21.9 1.5E+02 0.0053 22.0 5.3 66 70-150 6-73 (142)
181 1hjr_A Holliday junction resol 21.8 2.4E+02 0.0082 21.7 6.5 24 124-147 45-68 (158)
182 3is3_A 17BETA-hydroxysteroid d 21.7 3.2E+02 0.011 22.0 9.4 86 37-145 16-103 (270)
183 2qh8_A Uncharacterized protein 21.7 2.8E+02 0.0095 22.6 7.4 73 56-145 126-200 (302)
184 2x7x_A Sensor protein; transfe 21.2 3.4E+02 0.012 22.2 8.5 67 67-145 127-195 (325)
185 1shu_X Anthrax toxin receptor 21.0 2.6E+02 0.0088 20.7 6.7 42 67-111 102-143 (182)
186 3u7q_B Nitrogenase molybdenum- 20.9 4.9E+02 0.017 23.9 10.8 83 36-145 361-445 (523)
187 1mio_B Nitrogenase molybdenum 20.8 4.5E+02 0.015 23.5 10.9 82 37-145 310-392 (458)
188 3fro_A GLGA glycogen synthase; 20.7 1.2E+02 0.0041 25.8 5.0 41 39-79 2-47 (439)
189 3fdx_A Putative filament prote 20.5 2.3E+02 0.0078 19.9 8.1 21 126-146 94-114 (143)
190 4ggo_A Trans-2-enoyl-COA reduc 20.4 4.7E+02 0.016 23.5 10.5 92 36-143 47-145 (401)
191 4g81_D Putative hexonate dehyd 20.4 3.6E+02 0.012 22.1 8.4 85 37-145 7-93 (255)
192 3ksu_A 3-oxoacyl-acyl carrier 20.3 2.8E+02 0.0094 22.3 7.0 88 37-145 9-98 (262)
193 3osu_A 3-oxoacyl-[acyl-carrier 20.2 3.2E+02 0.011 21.5 9.4 84 39-145 4-89 (246)
194 3brs_A Periplasmic binding pro 20.2 3.1E+02 0.011 21.7 7.3 72 62-145 123-197 (289)
No 1
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=100.00 E-value=3.7e-36 Score=261.04 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=136.8
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
.++++|+|+||||||+|||||||++++++|.+|+++|+|+|+.+. .++.|++|+++|+++||+ +.+.+|+|||..
T Consensus 2 ~~~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv--~~~~~L~~~D~~- 78 (242)
T 2ixd_A 2 SGLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGV--KTRLNLAMPDRG- 78 (242)
T ss_dssp CCCSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTC--CEEEEEEECTTC-
T ss_pred CCccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCC--CeEEECCCCCCC-
Confidence 356899999999999999999999999999999999999999863 568999999999999999 467899999963
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCC------------CceEEeeehhh
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE------------RNIEAWELMTT 183 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~------------~~~~~ye~~s~ 183 (243)
+. +.+++++.|+++|++++||+|+||+ +.|+|+||+++++++.+|+...+. +.++.|+. +
T Consensus 79 -~~---~~~~~~~~l~~~ir~~~PdvV~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~y~~--~ 150 (242)
T 2ixd_A 79 -LY---MKEEYIREIVKVIRTYKPKLVFAPY--YEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMI--N 150 (242)
T ss_dssp -CC---CCHHHHHHHHHHHHHHCCSEEEEEC--SCSSSHHHHHHHHHHHHHHHHHTCTTSSTTSCCCCCSEEEEECC--S
T ss_pred -CC---ChHHHHHHHHHHHHHcCCCEEEECC--CCCCChhHHHHHHHHHHHHHHcCCccccCcCCCCCcceEEEEec--c
Confidence 22 4578999999999999999999995 468999999999999999754321 12222221 0
Q ss_pred hhhhccCCchhHHHHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchhhHhhh
Q 026131 184 NILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQWVWC 235 (243)
Q Consensus 184 ~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ~~wf 235 (243)
....|+++||++. ++|++||+||+||+.+.
T Consensus 151 ----------------------~~~~p~~~vdis~~~~~K~~Al~~h~SQ~~~~ 182 (242)
T 2ixd_A 151 ----------------------GFHKPNFCIDISEYLSIKVEALEAYESQFSTG 182 (242)
T ss_dssp ----------------------SCCCCSEEEECGGGHHHHHHHHHTCHHHHCCT
T ss_pred ----------------------CCCCCCEEEECcHHHHHHHHHHHHHHHhccCC
Confidence 1234688999874 79999999999999864
No 2
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=100.00 E-value=3.1e-36 Score=269.44 Aligned_cols=193 Identities=20% Similarity=0.224 Sum_probs=143.9
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC----------------CchHHHHHHHHHHHHHcCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD----------------GMGNIRKDELHRACAVLKIPL 102 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~----------------~~~~~R~~E~~~A~~~LGv~~ 102 (243)
.+++|+|+||||||+|||||||++++++|.+|++||+|+|+.+ +++..|++|+++|+++||+
T Consensus 4 ~~~vL~v~AHPDDe~l~~ggtla~~~~~G~~V~vv~lT~Ge~g~~~~~~~~~~~~~~~~~l~~~R~~E~~~A~~~LGv-- 81 (303)
T 1q74_A 4 TPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGV-- 81 (303)
T ss_dssp CCEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESCCCTTCCCSSSTTGGGSTTTTCCHHHHHHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeCCchHHHhHHHHHHHHHHCCCcEEEEEEcCCCCCCCCChhhhccccccHHHHHHHHHHHHHHHHHHhCC--
Confidence 5799999999999999999999999999999999999999853 3468999999999999999
Q ss_pred CcEEEcc----CCCCCCC-------cc-ccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhc
Q 026131 103 EQVKVLD----LVDFQDG-------FD-KLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGT 170 (243)
Q Consensus 103 ~~~~~l~----~pd~~d~-------~~-~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~ 170 (243)
.++.+|+ |+|..-. .. ..|+.+++++.|+++|++++||+|+||||+|.|+|+||+++++++.+|++..
T Consensus 82 ~~~~~L~~~~~~~D~~l~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~rP~vV~t~~p~g~~~HpDH~~~~~~~~~A~~~a 161 (303)
T 1q74_A 82 SAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAA 161 (303)
T ss_dssp CCCEETTSTTSSBCCCCC----CCSCBGGGSCHHHHHHHHHHHHHHHCCSEEEEECTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEECCCCCcCCCCCCCCCccccCcccccCCHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5678999 8885311 00 1347789999999999999999999999999999999999999999997643
Q ss_pred C--------------CCceEEeeehhhhhhhccC---------CchhHHHHHHh-hhcccCCceeEEEeCC--H-HHHHH
Q 026131 171 S--------------ERNIEAWELMTTNILRKYS---------GPLDIWLSILS-ATQYRRGQVHCLLNEH--P-KKSFL 223 (243)
Q Consensus 171 ~--------------~~~~~~ye~~s~~~~~~y~---------~~~d~~~~~~~-~~~~~~~~~~~~v~~~--~-~~k~~ 223 (243)
. ++.++ |...+.+.++++. ..+... ..-. ....|...++++|+++ . ++|++
T Consensus 162 ~~~~~~~~~pg~~w~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~vdis~~~~~~K~~ 239 (303)
T 1q74_A 162 GVGSGTADHPGDPWTVPKFY-WTVLGLSALISGARALVPDDLRPEWVLP-RADEIAFGYSDDGIDAVVEADEQARAAKVA 239 (303)
T ss_dssp HC------CCSCCCCCSEEE-EEECBHHHHHHHHHHCCGGGSCTTCBCC-CGGGTCCCBCGGGCCEEEECCHHHHHHHHH
T ss_pred ccccccccCCCCCccCcEEE-EEecChHHHHHHHHHhhccccCCCCccc-cccccccCCCCccceEEEEcHHhHHHHHHH
Confidence 2 12232 3333222222210 000000 0000 0001223468999998 3 78999
Q ss_pred HHHhchhhHhhh
Q 026131 224 AMSQHHSQWVWC 235 (243)
Q Consensus 224 Am~~H~SQ~~wf 235 (243)
||+||+||+..+
T Consensus 240 Al~ah~SQ~~~~ 251 (303)
T 1q74_A 240 ALAAHATQVVVG 251 (303)
T ss_dssp HHHHCTTTCEEC
T ss_pred HHHHhhCcCCCC
Confidence 999999999863
No 3
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=100.00 E-value=5.6e-36 Score=263.75 Aligned_cols=187 Identities=16% Similarity=0.160 Sum_probs=137.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHH
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACA 96 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~ 96 (243)
...+++|+|+||||||+|||||||++++++|.+|++|++|+|+.+. ++..|++|+++|++
T Consensus 5 ~~~~rvLvv~aHPDDe~l~~GGtia~~~~~G~~V~vv~~T~Ge~g~~~~~~a~~~~~~~g~~~~~~l~~~R~~E~~~A~~ 84 (270)
T 3dfi_A 5 ADRTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFAGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALD 84 (270)
T ss_dssp -CCSEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESSCCCCCSSCCHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEeCCchHHHhhHHHHHHHHhCCCeEEEEEEeCCCCCCCcchhhhhcccccCCChHHHHHHHHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999998742 57899999999999
Q ss_pred HcCCCCCcEEEcc-----CCCCC--C-C----ccccCC-------hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHH
Q 026131 97 VLKIPLEQVKVLD-----LVDFQ--D-G----FDKLWN-------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHR 157 (243)
Q Consensus 97 ~LGv~~~~~~~l~-----~pd~~--d-~----~~~~~~-------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~ 157 (243)
+||++..++.||| +||.. + . +...+. .+++.+.|+++|++++||+|+|| ++.|+|+||+
T Consensus 85 ~LGv~~~~~~fld~~~~~~pDg~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~~PdvV~t~--~~~d~HpDH~ 162 (270)
T 3dfi_A 85 QLGAGHRHGRFLDAIYRRSPDGQWLLHHNEGSMVRQQSPANNHDLVAAIREDIESMIAECDPTLVLTC--VAIGKHPDHK 162 (270)
T ss_dssp HHTCEEEECCCCCGGGC-----------------------CHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHHHH
T ss_pred HcCCCccccccCCccccCCCCCCcccccCccccccccCcccccchHHHHHHHHHHHHHHcCCCEEEeC--CCCCCChhHH
Confidence 9999543446775 66642 0 0 000011 25889999999999999999998 7899999999
Q ss_pred HHHHHHHHHHhhcCCCceEEeeehhhhhhhccCCchhHHHHHHhhhcccCCceeEEEeCCH---HHHHHHHHhchhhHhh
Q 026131 158 DVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHP---KKSFLAMSQHHSQWVW 234 (243)
Q Consensus 158 ~~~~av~~a~~~~~~~~~~~ye~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~---~~k~~Am~~H~SQ~~w 234 (243)
++++++.+|++..+ ..+.+||..+..++.+.... .+ ... ....+ .+|+++. ++|++||+||+||+..
T Consensus 163 ~~~~a~~~A~~~~~-~~~~~~e~~p~~~~~~~~~~--~~---~~~---~~~~p-~~vdis~~~~~~K~~Al~ay~SQ~~~ 232 (270)
T 3dfi_A 163 ATRDATLLAARERG-IPLRLWQDLPYAAYSQDLAE--LP---DGL---RLGSP-ELSFVDEEARTRKFQAMKHYATQLSV 232 (270)
T ss_dssp HHHHHHHHHHHHTT-CCEEEECCTTHHHHSCCCCC--CC---TTE---EECCC-EEEECCHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCeeEecccceEeccCCChh--hc---CCC---cCCCC-eEEeCCHHHHHHHHHHHHHhhhhccc
Confidence 99999999987654 34678886544333321100 00 000 01123 5788884 5999999999999985
Q ss_pred h
Q 026131 235 C 235 (243)
Q Consensus 235 f 235 (243)
+
T Consensus 233 ~ 233 (270)
T 3dfi_A 233 L 233 (270)
T ss_dssp H
T ss_pred c
Confidence 4
No 4
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=100.00 E-value=1e-35 Score=255.95 Aligned_cols=161 Identities=14% Similarity=0.094 Sum_probs=133.8
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
.++|+|+||||||++||||||++++++|.+|+++|+|+|+.+. ..+.|++|+++|+++||+ +.+.+|+|||.. +
T Consensus 2 ~~vL~v~aHPDDe~l~~ggtia~~~~~G~~v~vv~lT~G~~g~~~~~~~R~~E~~~A~~~lG~--~~~~~l~~~D~~--l 77 (227)
T 1uan_A 2 LDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGL--DFRGNLGFPDGG--L 77 (227)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTC--SEEEEEEECTTC--C
T ss_pred ceEEEEEeCCCcHHHhHHHHHHHHHhCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhcCC--CeEEECCCCCCC--C
Confidence 4799999999999999999999999999999999999999863 468999999999999999 567899999853 2
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCC------------ceEEeeehhhhh
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSER------------NIEAWELMTTNI 185 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~------------~~~~ye~~s~~~ 185 (243)
.+.+++.+.|.++|++++||+|+||+ +.|+|+||+++++++.+|+.....+ .++.|+.
T Consensus 78 ---~~~~~~~~~l~~~ir~~~P~~V~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~~~~----- 147 (227)
T 1uan_A 78 ---ADVPEQRLKLAQALRRLRPRVVFAPL--EADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPG----- 147 (227)
T ss_dssp ---CCCHHHHHHHHHHHHHHCEEEEEEEC--SCCSSHHHHHHHHHHHHHHHHHTCTTSSCSSCCCCCSEEEEECC-----
T ss_pred ---CChHHHHHHHHHHHHHhCCCEEEeCC--CCCCChHHHHHHHHHHHHHHHcCCCcccCCCCCCccceEEEEec-----
Confidence 24578999999999999999999995 5789999999999999997543211 1222211
Q ss_pred hhccCCchhHHHHHHhhhcccCCceeEEEeCCH--HHHHHHHHhchhhHh
Q 026131 186 LRKYSGPLDIWLSILSATQYRRGQVHCLLNEHP--KKSFLAMSQHHSQWV 233 (243)
Q Consensus 186 ~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~--~~k~~Am~~H~SQ~~ 233 (243)
.....|+++||++. ++|++||+||+||+.
T Consensus 148 -------------------~~~~~p~~~vdis~~~~~K~~Al~~h~SQ~~ 178 (227)
T 1uan_A 148 -------------------NHPFAPSFLVKISAFIDQWEAAVLAYRSQFT 178 (227)
T ss_dssp -------------------SSCCCCSEEEECGGGHHHHHHHHHTCHHHHC
T ss_pred -------------------cCCCCCCEEEECcHHHHHHHHHHHHHHHhcc
Confidence 01234688999874 799999999999986
No 5
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=100.00 E-value=1e-35 Score=262.46 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=138.4
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHHH
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACAV 97 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~~ 97 (243)
.++++|+|+||||||+|||||||++++++|.+|++||+|+|+.+. +++.|++|+++|+++
T Consensus 6 ~~~rvLvv~aHPDDe~lg~GGtia~~~~~G~~V~vv~~T~G~~g~~~~~~~~~~~~~~g~~~~~~l~~~R~~E~~~A~~~ 85 (273)
T 3dff_A 6 GATRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDH 85 (273)
T ss_dssp --CEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEETTCCCCCSSCCHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCChHHHhHHHHHHHHHHCCCcEEEEEEeCCCCCCCCchhhhhcccccCCChhhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999998742 578999999999999
Q ss_pred cCCCCCcEEEcc-----CCCCCC---Ccc---ccCC-----------hHHHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 98 LKIPLEQVKVLD-----LVDFQD---GFD---KLWN-----------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 98 LGv~~~~~~~l~-----~pd~~d---~~~---~~~~-----------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
||++..++.|+| +||..- ++. ..|. .+++.+.|+++|++++||+|+|| ++.|+|+|
T Consensus 86 LGv~~~~l~~ld~~~~~~pDg~~~~~~~~~~~~l~~~~~~p~~~~~~~~~l~~~l~~~ir~~~PdvV~t~--~~~d~HpD 163 (273)
T 3dff_A 86 LRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTC--AAIGEHPD 163 (273)
T ss_dssp TTCEEEECCCCCGGGCBCTTSSBSEECCTTCSSCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHH
T ss_pred hCCCceeecccccccccCCCCccccccccchhhhhccccCcccccchHHHHHHHHHHHHHHcCCCEEEEC--CCCCCChH
Confidence 999543344565 555320 000 1121 36899999999999999999998 78999999
Q ss_pred HHHHHHHHHHHHhhcCCCceEEeeehhhhhhhccCCchhHHHHHHhhhcccCCceeEEEeCCH---HHHHHHHHhchhhH
Q 026131 156 HRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHP---KKSFLAMSQHHSQW 232 (243)
Q Consensus 156 H~~~~~av~~a~~~~~~~~~~~ye~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~---~~k~~Am~~H~SQ~ 232 (243)
|+++++++.+|++..+. .+.+||.....++.+... ..+..+ .... ..+|+++. ++|++||+||+||+
T Consensus 164 H~~~~~a~~~A~~~~~~-~~~~~e~~~~~~~~~~~~--~~~~~~------~~~~-p~~v~i~~~~~~~K~~Al~ay~SQ~ 233 (273)
T 3dff_A 164 HEATRDAALFATHEKNV-PVRLWEDLPYAVFKSGAV--ELPQGF------RLGS-ADVSSVKPEMRSQKFQAVERYSSQM 233 (273)
T ss_dssp HHHHHHHHHHHHHHHTC-CEEEECCTTGGGTSCCCC--CCCTTE------EECC-CEECCBCHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHHcCC-CEEEecccchhhcCCCCc--cccccc------ccCC-CeEEECCHHHHHHHHHHHHHHhhhC
Confidence 99999999999876443 567888654333322110 000000 0012 25778874 59999999999999
Q ss_pred hhh
Q 026131 233 VWC 235 (243)
Q Consensus 233 ~wf 235 (243)
.++
T Consensus 234 ~~l 236 (273)
T 3dff_A 234 VLL 236 (273)
T ss_dssp HHH
T ss_pred Ccc
Confidence 864
No 6
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=93.10 E-value=0.29 Score=40.81 Aligned_cols=88 Identities=9% Similarity=0.131 Sum_probs=59.1
Q ss_pred CcEEEEecCchh-------hhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 40 KNVLLVIAHPDD-------ESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 40 ~~vL~v~aHPDD-------E~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
+.+|+++=|.|. |.++.+--|+. +.|.+|+++++-.+ .+ +..+.+..+|+ ++++..+.+.
T Consensus 4 ~~ilV~~E~~~g~l~~~s~ell~~A~~La~--~~g~~v~av~~G~~-~~--------~~~~~~~~~Ga--d~v~~v~~~~ 70 (217)
T 3ih5_A 4 NNLFVYCEIEEGIVADVSLELLTKGRSLAN--ELNCQLEAVVAGTG-LK--------EIEKQILPYGV--DKLHVFDAEG 70 (217)
T ss_dssp CCEEEECCEETTEECHHHHHHHHHHHHHHH--HHTCCEEEEEEESC-CT--------TTHHHHGGGTC--SEEEEEECGG
T ss_pred ccEEEEEECcCCEECHHHHHHHHHHHHHHH--hcCCeEEEEEECCC-HH--------HHHHHHHhcCC--CEEEEecCcc
Confidence 468999999654 44544433332 13788988888654 11 11223334699 7888888665
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 113 ~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+. ..+.+...+.|.+++++.+||+|++.
T Consensus 71 ~~-----~~~~~~~a~~l~~~i~~~~p~~Vl~g 98 (217)
T 3ih5_A 71 LY-----PYTSLPHTSILVNLFKEEQPQICLMG 98 (217)
T ss_dssp GS-----SCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 42 13556788999999999999999987
No 7
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=88.27 E-value=2.5 Score=36.77 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.7
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
+|||+++.----....+-++...+.++|++|.+++
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~ 36 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAA 36 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEec
Confidence 57887774434455678888999999999998865
No 8
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=87.67 E-value=4.5 Score=35.44 Aligned_cols=90 Identities=12% Similarity=0.075 Sum_probs=55.3
Q ss_pred cEEEEecCchhhhcchHHHHHHHH-hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLT-SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~-~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
++|+++-|.|...--..--+...+ +-+.+|+++++-.+. ...+++++..+|+ ++++..+.+.+.
T Consensus 3 ~~lv~~e~~~g~l~~~~~eal~aA~~La~~V~av~~G~~~--------~~~~~~a~~a~Ga--Dkv~~v~d~~l~----- 67 (315)
T 1efv_A 3 STLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC--------DKVAQDLCKVAGI--AKVLVAQHDVYK----- 67 (315)
T ss_dssp EEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESCC--------HHHHHHHHHSTTC--CEEEEEECGGGT-----
T ss_pred eEEEEEEccCCCcCHHHHHHHHHHHHhcCcEEEEEECCch--------HHHHHHHHHhcCC--CEEEEecCchhc-----
Confidence 478888886653221111111122 222377777766431 1223344467899 688888865432
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+.+...+.|.+++++.+||+|++.
T Consensus 68 ~~~~~~~a~~La~li~~~~pdlVL~g 93 (315)
T 1efv_A 68 GLLPEELTPLILATQKQFNYTHICAG 93 (315)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 13566788899999999999999987
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=85.33 E-value=3.8 Score=34.93 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=48.6
Q ss_pred CcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 40 KNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Gg-----ti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
++|++++.+.-. .|... ....+.++|++|++++...+... . -|+ +++.+..+...
T Consensus 1 MkIl~i~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~-------------~~~---~v~~~~~~~~~ 60 (374)
T 2iw1_A 1 MIVAFCLYKYFP--FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--P-------------KAF---ELIQVPVKSHT 60 (374)
T ss_dssp -CEEEECSEECT--TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--C-------------TTC---EEEECCCCCSS
T ss_pred CeEEEEEeecCC--CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--C-------------CCc---EEEEEccCccc
Confidence 468888876221 22222 23445678999999887643211 0 155 45555543221
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
...........+.+.+++.+||+|++++.
T Consensus 61 ----~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~ 89 (374)
T 2iw1_A 61 ----NHGRNAEYYAWVQNHLKEHPADRVVGFNK 89 (374)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSCCSEEEESSC
T ss_pred ----chhhHHHHHHHHHHHHhccCCCEEEEecC
Confidence 00112345567888899999999998864
No 10
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=85.09 E-value=3.8 Score=35.01 Aligned_cols=86 Identities=6% Similarity=0.038 Sum_probs=45.8
Q ss_pred CcEEEEecCchhhhcchHHHHH-------HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 026131 40 KNVLLVIAHPDDESMFFSPTIN-------YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~-------~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd 112 (243)
++||+++. +.||... .+.++|++|.+++...+. . . ......|+ ++..+..+.
T Consensus 7 mkIl~~~~-------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~-----~---~---~~~~~~g~---~~~~~~~~~ 65 (364)
T 1f0k_A 7 KRLMVMAG-------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRM-----E---A---DLVPKHGI---EIDFIRISG 65 (364)
T ss_dssp CEEEEECC-------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTST-----H---H---HHGGGGTC---EEEECCCCC
T ss_pred cEEEEEeC-------CCccchhHHHHHHHHHHHcCCEEEEEecCCcc-----h---h---hhccccCC---ceEEecCCc
Confidence 68999873 3344433 344679999877654321 1 0 11222466 444454432
Q ss_pred CCCCc-cc----cCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 113 FQDGF-DK----LWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 113 ~~d~~-~~----~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..... .. .+..-.....+.+.+++.+||+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~ 104 (364)
T 1f0k_A 66 LRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMG 104 (364)
T ss_dssp CTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECS
T ss_pred cCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21100 00 001112345678888999999999973
No 11
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=84.48 E-value=2.4 Score=37.05 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~l 75 (243)
...+|||+++..-.=....+-.....+.++|++|.+++-
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~ 56 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATG 56 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEcc
Confidence 456799999866555556677778888899999977753
No 12
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=83.94 E-value=10 Score=32.35 Aligned_cols=89 Identities=9% Similarity=0.032 Sum_probs=50.3
Q ss_pred CCCcEEEEecCchhhhcchHH-HHHHHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 38 DKKNVLLVIAHPDDESMFFSP-TINYLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Gg-ti~~~~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
..++||+|+...-.. .|... .+..+++ +|++|.+++.+.+. ....+. -...|+ .+..++...
T Consensus 3 ~~mkIl~v~~~~~p~-~gG~~~~~~~l~~~L~g~~v~v~~~~~~~------~~~~~~---~~~~~~-----~~~~~~~~~ 67 (394)
T 3okp_A 3 ASRKTLVVTNDFPPR-IGGIQSYLRDFIATQDPESIVVFASTQNA------EEAHAY---DKTLDY-----EVIRWPRSV 67 (394)
T ss_dssp -CCCEEEEESCCTTS-CSHHHHHHHHHHTTSCGGGEEEEEECSSH------HHHHHH---HTTCSS-----EEEEESSSS
T ss_pred CCceEEEEeCccCCc-cchHHHHHHHHHHHhcCCeEEEEECCCCc------cchhhh---ccccce-----EEEEccccc
Confidence 356899999743322 23222 2334444 48999998887652 111111 133444 333333211
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+........+.+++++.+||+|++++
T Consensus 68 -----~~~~~~~~~~l~~~~~~~~~Dvv~~~~ 94 (394)
T 3okp_A 68 -----MLPTPTTAHAMAEIIREREIDNVWFGA 94 (394)
T ss_dssp -----CCSCHHHHHHHHHHHHHTTCSEEEESS
T ss_pred -----cccchhhHHHHHHHHHhcCCCEEEECC
Confidence 123346678889999999999999874
No 13
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=83.45 E-value=4.4 Score=34.89 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=50.3
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC-cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH-NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~-~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
++||+++..+ -|.+.+.+.+..+.++|. ++.+++.+.. .+. ..+ .....|+.. ...++.... +.
T Consensus 1 mkIl~v~~~~-~~~~~~~~l~~~L~~~g~~~~~v~~~~~~--~~~----~~~---~~~~~~~~~--~~~~~~~~~--~~- 65 (384)
T 1vgv_A 1 MKVLTVFGTR-PEAIKMAPLVHALAKDPFFEAKVCVTAQH--REM----LDQ---VLKLFSIVP--DYDLNIMQP--GQ- 65 (384)
T ss_dssp CEEEEEECSH-HHHHHHHHHHHHHHHSTTCEEEEEECCSS--GGG----GHH---HHHHHTCCC--SEECCCCST--TS-
T ss_pred CeEEEEeccc-HHHHHHHHHHHHHHhCCCCceEEEEcCCC--HHH----HHH---HHHHcCCCC--CcceecCCC--Cc-
Confidence 4788887764 344556788888888884 7776544322 111 111 122256521 022332211 10
Q ss_pred ccCC-hHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWN-HKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~-~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.... .......+.+++++.+||+|+++
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~pDvv~~~ 93 (384)
T 1vgv_A 66 GLTEITCRILEGLKPILAEFKPDVVLVH 93 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0001 12345678889999999999998
No 14
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=83.24 E-value=4.2 Score=35.54 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=27.4
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~l 75 (243)
....+|||+++.----....+-++...+.++|++|.+++-
T Consensus 12 ~~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~ 51 (398)
T 4fzr_A 12 RGSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAAS 51 (398)
T ss_dssp ---CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEE
T ss_pred CCCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcC
Confidence 4456789988643333456678888899999999988663
No 15
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=82.80 E-value=4.5 Score=34.98 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=24.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
++||+++.---=....|-+....|.++|++|.+++
T Consensus 5 ~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 5 RHILFANVQGHGHVYPSLGLVSELARRGHRITYVT 39 (402)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEc
Confidence 37777764323345667777888889999998766
No 16
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=82.47 E-value=6.4 Score=33.81 Aligned_cols=92 Identities=15% Similarity=0.160 Sum_probs=47.5
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
++|++++.++. +..+....+..+.++ |+++.+++ | |.. . . ......+.+|+... ..++.... +..
T Consensus 6 mkIl~v~~~~~-~~~~~~~l~~~L~~~~g~~v~~~~-~-~~~--~-~----~~~~~~~~~~~~~~--~~~~~~~~--~~~ 71 (376)
T 1v4v_A 6 KRVVLAFGTRP-EATKMAPVYLALRGIPGLKPLVLL-T-GQH--R-E----QLRQALSLFGIQED--RNLDVMQE--RQA 71 (376)
T ss_dssp EEEEEEECSHH-HHHHHHHHHHHHHTSTTEEEEEEE-C-SSC--H-H----HHHHHHHTTTCCCS--EECCCCSS--CCC
T ss_pred eEEEEEEeccH-HHHHHHHHHHHHHhCCCCceEEEE-c-CCc--H-H----HHHHHHHHcCCCcc--cccccCCC--Ccc
Confidence 58999986643 334455666666666 56665554 3 321 1 1 11122334676210 22332211 110
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...........+.+++++.+||+|+++
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~pDvv~~~ 98 (376)
T 1v4v_A 72 LPDLAARILPQAARALKEMGADYVLVH 98 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000011345678888999999999998
No 17
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=81.71 E-value=9.3 Score=33.30 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=27.6
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~l 75 (243)
...+|||+++.----....|-++...+.++|++|.+++-
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 344689998732223345677888889999999988764
No 18
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=76.63 E-value=9.4 Score=33.31 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
..++||+++.---=...-|-+....|.++|++|.+++
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~ 55 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVT 55 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEe
Confidence 3457888765333345667788888899999998776
No 19
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=73.83 E-value=20 Score=28.12 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=45.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
.+++|+++-|++ -+ --+...++.+.+|.++++-.++. +.+|+ ++++..+ ++ .
T Consensus 3 ~M~vlV~~E~~~-~~----~Ell~~ar~~g~v~av~~G~~~~---------------~~~Ga--d~v~~v~-~~---~-- 54 (166)
T 3fet_A 3 AMKFLTVSDDMN-FL----RQVNTLVAGKGDMDSVIIGEGDA---------------KGLGS--KVLYRAK-KG---T-- 54 (166)
T ss_dssp SEEEEEEESSHH-HH----HHHHHHHGGGEEEEEEEESCCCC---------------TTCCC--SEEEEEC-TT---C--
T ss_pred ccEEEEEEcCcc-HH----HHHHHhhccCCcEEEEEECcchH---------------HHcCC--CEEEEeC-CC---C--
Confidence 478999999844 21 11222233334777777754321 11398 7888887 42 1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
..+...+.|.++++ +||+|++.
T Consensus 55 ---~~e~~a~~l~~~~~--~p~~Vl~g 76 (166)
T 3fet_A 55 ---PFDAVSEGILKIAG--NYDYIAIG 76 (166)
T ss_dssp ---CHHHHHHHHHHHHT--TCSEEEEE
T ss_pred ---ChHHHHHHHHHHHc--CCCEEEEc
Confidence 23466777888877 99999986
No 20
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=73.70 E-value=9.7 Score=32.39 Aligned_cols=81 Identities=11% Similarity=0.059 Sum_probs=48.8
Q ss_pred Cchhh-hcchHHHHHHHHh-CCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCCh
Q 026131 48 HPDDE-SMFFSPTINYLTS-RRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNH 123 (243)
Q Consensus 48 HPDDE-~l~~Ggti~~~~~-~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~ 123 (243)
.|.|+ .+..+- ++.+ .|. +|+++++-... .+|..+.+-.+|+ ++++.++.+.+. ..+.
T Consensus 36 np~d~~ale~A~---~Lke~~g~~~~V~av~~G~~~--------~~~~lr~ala~Ga--D~vi~v~d~~~~-----~~~~ 97 (264)
T 1o97_C 36 NEWDDFSLEEAM---KIKESSDTDVEVVVVSVGPDR--------VDESLRKCLAKGA--DRAVRVWDDAAE-----GSDA 97 (264)
T ss_dssp CHHHHHHHHHHH---HHHHHCSSCCEEEEEEESCGG--------GHHHHHHHHHTTC--SEEEEECCGGGT-----TCCH
T ss_pred CHHHHHHHHHHH---HHHHhcCCCceEEEEEeCchh--------HHHHHHHHHhcCC--CEEEEEcCcccc-----cCCH
Confidence 45554 443332 3333 254 67666654311 1233333344699 688888755432 1355
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
......|.+++++.+||+|++..
T Consensus 98 ~~~a~~La~~i~~~~~dlVl~G~ 120 (264)
T 1o97_C 98 IVVGRILTEVIKKEAPDMVFAGV 120 (264)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Confidence 67888899999999999999974
No 21
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=73.03 E-value=3 Score=35.96 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHH-----HHHhCCCcEEEEEEeC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTIN-----YLTSRRHNLHILCMSN 77 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~-----~~~~~G~~V~vv~lT~ 77 (243)
..+.++||+|.+||+.+. +...|+ .+.++|++|.++-+-+
T Consensus 19 ~m~~MKiLII~aHP~~~S--~n~aL~~~~~~~l~~~G~eV~v~DLy~ 63 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRS--LNGALKNFAIRHLQQAGHEVQVSDLYA 63 (280)
T ss_dssp ---CCEEEEEECCSCTTS--HHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred hhhCCeEEEEEeCCCCcc--HHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 456679999999999775 344443 3446799999887744
No 22
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=72.81 E-value=33 Score=28.75 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=49.4
Q ss_pred Cchhh-hcchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCCh
Q 026131 48 HPDDE-SMFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNH 123 (243)
Q Consensus 48 HPDDE-~l~~Ggti~~~~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~ 123 (243)
.|.|+ .+..+ .++.++|. +|+++++-... .+|..+.+-.+|+ ++.+.++ .+.+..+ .+.
T Consensus 36 np~d~~Ale~A---~~Lke~g~~~~V~av~~G~~~--------a~~~lr~ala~Ga--D~vi~v~~d~~~~~~----~~~ 98 (252)
T 1efp_B 36 NPFDEIAVEEA---IRLKEKGQAEEIIAVSIGVKQ--------AAETLRTALAMGA--DRAILVVAADDVQQD----IEP 98 (252)
T ss_dssp CHHHHHHHHHH---HHHHTTTSCSEEEEEEEESGG--------GHHHHHHHHHHTC--SEEEEEECCSSTTCC----CCH
T ss_pred CHHHHHHHHHH---HHHHhcCCCceEEEEEeCChh--------HHHHHHHHHhcCC--CEEEEEecChhhccc----CCH
Confidence 45554 43322 34455565 77777665421 1222222334599 6888887 5543111 245
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
......|.+++++.+||+|++..
T Consensus 99 ~~~a~~La~~i~~~~~dlVl~G~ 121 (252)
T 1efp_B 99 LAVAKILAAVARAEGTELIIAGK 121 (252)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Confidence 67788899999998999999974
No 23
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=72.16 E-value=3.3 Score=36.22 Aligned_cols=38 Identities=11% Similarity=0.041 Sum_probs=25.9
Q ss_pred CCCCCcEEEEecCchhhhcchHH-------HHHHHHhCCCcEEEEEEeCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSP-------TINYLTSRRHNLHILCMSNG 78 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Gg-------ti~~~~~~G~~V~vv~lT~G 78 (243)
...+++||++.+.+ ..|| ....+.+.|++|.+++.+.+
T Consensus 37 ~~~~mkIl~v~~~~-----~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 37 KLKGRSFVHVNSTS-----FGGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTTTCEEEEEESCS-----SSSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hhhccEEEEEeCCC-----CCCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 34567999999885 2233 23345578999998887653
No 24
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=71.63 E-value=14 Score=32.32 Aligned_cols=84 Identities=11% Similarity=0.162 Sum_probs=53.4
Q ss_pred EEEEecCchh-------hhcchHHHHHHHHhCC-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 026131 42 VLLVIAHPDD-------ESMFFSPTINYLTSRR-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (243)
Q Consensus 42 vL~v~aHPDD-------E~l~~Ggti~~~~~~G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~ 113 (243)
+|+++-|.|- |.+..+- ++.+.| .+|+++++-.+ . . .+++++..+|+ ++++..+.+.+
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~---~L~e~g~~~V~av~~G~~-~-------~-~~~~~a~a~Ga--Dkv~~v~d~~l 68 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAAN---GLKKSGEDKVVVAVIGSQ-A-------D-AFVPALSVNGV--DELVVVKGSSI 68 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHH---HHCSSTTCEEEEEEESTT-G-------G-GGHHHHCBTTC--SEEEEEECSCS
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHH---HHhhCCCCcEEEEEECCc-H-------H-HHHHHHHhcCC--ceEEEEeCccc
Confidence 5677777554 3333332 232225 47877766543 1 1 22334556799 78888886543
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 114 ~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+ .+.+...+.|.+++++.+||+|++.
T Consensus 69 --~----~~~~~~a~~La~~i~~~~pdlVL~g 94 (320)
T 1o97_D 69 --D----FDPDVFEASVSALIAAHNPSVVLLP 94 (320)
T ss_dssp --S----CCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred --C----CCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1 2456788899999999999999987
No 25
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=71.03 E-value=43 Score=32.75 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=35.2
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCC---cEEEEEEeCCCCCCch-----------HHHHHHHHHHHHHcCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRH---NLHILCMSNGNADGMG-----------NIRKDELHRACAVLKI 100 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~---~V~vv~lT~G~~~~~~-----------~~R~~E~~~A~~~LGv 100 (243)
..++-++.|--+.+.--...+|..+.++.. +..++++.||+.++.. +.+.++.++.++..|+
T Consensus 139 ~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 345655555444432223677888776543 3678889998754321 1245556666666666
No 26
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=70.45 E-value=31 Score=29.04 Aligned_cols=81 Identities=10% Similarity=0.077 Sum_probs=49.1
Q ss_pred Cchhh-hcchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCC-CCCccccCC
Q 026131 48 HPDDE-SMFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDF-QDGFDKLWN 122 (243)
Q Consensus 48 HPDDE-~l~~Ggti~~~~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~-~d~~~~~~~ 122 (243)
.|.|+ .+..+ .++.++|. +|+++++-... .+|..+.+-.+|+ ++.+.++ .+.+ . + .+
T Consensus 39 np~d~~Ale~A---~~Lke~g~~~~V~av~~G~~~--------a~~~lr~ala~Ga--D~vi~v~~d~~~~~-~----~~ 100 (255)
T 1efv_B 39 NPFCEIAVEEA---VRLKEKKLVKEVIAVSCGPAQ--------CQETIRTALAMGA--DRGIHVEVPPAEAE-R----LG 100 (255)
T ss_dssp CHHHHHHHHHH---HHHHHTTSCSEEEEEEEESTT--------HHHHHHHHHHHTC--SEEEEEECCHHHHT-T----CC
T ss_pred CHHHHHHHHHH---HHHHhcCCCceEEEEEeCChh--------HHHHHHHHHhcCC--CEEEEEecChhhcc-c----CC
Confidence 45554 44333 34455566 78777665421 2233223344599 6788887 4432 1 1 24
Q ss_pred hHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 123 HKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.......|.+++++.+||+|++..
T Consensus 101 ~~~~A~~La~~i~~~~~dlVl~G~ 124 (255)
T 1efv_B 101 PLQVARVLAKLAEKEKVDLVLLGK 124 (255)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeC
Confidence 567788899999998999999974
No 27
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=69.50 E-value=16 Score=31.04 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCCCEEEee
Q 026131 125 SLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
.....+.+++++.+||+|+++
T Consensus 82 ~~~~~l~~~l~~~~pDvv~~~ 102 (375)
T 3beo_A 82 RGLEGLDKVMKEAKPDIVLVH 102 (375)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEe
Confidence 345668889999999999997
No 28
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=69.49 E-value=29 Score=30.31 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=22.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
++||+++..-.=....+-.....+.++|++|++++
T Consensus 8 ~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~ 42 (430)
T 2iyf_A 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAI 42 (430)
T ss_dssp CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEe
Confidence 57888643222233455667777888999997764
No 29
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=66.98 E-value=25 Score=31.26 Aligned_cols=92 Identities=12% Similarity=0.224 Sum_probs=50.3
Q ss_pred cEE-EEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 026131 41 NVL-LVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (243)
Q Consensus 41 ~vL-~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~ 119 (243)
+|+ +++.-|+|-- +.+.+..+.+++..+.+.++-+|.. + .......+.+|+.+ + +.++.-....+...
T Consensus 29 kI~~v~Gtr~~~~~--~a~li~~l~~~~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~-~-~~l~v~~~~~~~~~ 97 (403)
T 3ot5_A 29 KVMSIFGTRPEAIK--MAPLVLALEKEPETFESTVVITAQH------R-EMLDQVLEIFDIKP-D-IDLDIMKKGQTLAE 97 (403)
T ss_dssp EEEEEECSHHHHHH--HHHHHHHHHTCTTTEEEEEEECC------------CHHHHHHTTCCC-S-EECCCCC-CCCHHH
T ss_pred eEEEEEecChhHHH--HHHHHHHHHhCCCCCcEEEEEecCc------H-HHHHHHHHhcCCCC-C-cccccCCCCCCHHH
Confidence 555 4555666655 3889999887642344443344432 1 12233456788843 2 23443111111110
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 120 LWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
........+.+++++++||+|+++
T Consensus 98 --~~~~~~~~l~~~l~~~kPD~Vi~~ 121 (403)
T 3ot5_A 98 --ITSRVMNGINEVIAAENPDIVLVH 121 (403)
T ss_dssp --HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred --HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 123567778999999999999997
No 30
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=66.93 E-value=48 Score=29.17 Aligned_cols=92 Identities=13% Similarity=0.213 Sum_probs=51.4
Q ss_pred CcEEEE-ecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLV-IAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v-~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
++|++| +.-|+|.- +.+.+..+.+++ .+.+.++.+|... + ......+.+|+.+ . +.++.-....+..
T Consensus 26 ~ki~~v~Gtr~~~~~--~a~li~~l~~~~-~~~~~~~~tG~h~---~----~~~~~~~~~~i~~-~-~~l~~~~~~~~~~ 93 (396)
T 3dzc_A 26 KKVLIVFGTRPEAIK--MAPLVQQLCQDN-RFVAKVCVTGQHR---E----MLDQVLELFSITP-D-FDLNIMEPGQTLN 93 (396)
T ss_dssp EEEEEEECSHHHHHH--HHHHHHHHHHCT-TEEEEEEECCSSS---H----HHHHHHHHTTCCC-S-EECCCCCTTCCHH
T ss_pred CeEEEEEeccHhHHH--HHHHHHHHHhCC-CCcEEEEEecccH---H----HHHHHHHhcCCCC-c-eeeecCCCCCCHH
Confidence 466554 55565544 488999988763 2444333344321 1 1223345788843 2 3444311111111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
. ........+.+++++++||+|+++
T Consensus 94 ~--~~~~~~~~l~~~l~~~kPDvVi~~ 118 (396)
T 3dzc_A 94 G--VTSKILLGMQQVLSSEQPDVVLVH 118 (396)
T ss_dssp H--HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred H--HHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1 123567778999999999999997
No 31
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=66.92 E-value=19 Score=31.44 Aligned_cols=18 Identities=0% Similarity=-0.173 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCCEEEee
Q 026131 128 KIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~ 145 (243)
....+++++++||+|+++
T Consensus 82 ~~~~~~l~~~~PDvVi~~ 99 (365)
T 3s2u_A 82 FQALRVIRQLRPVCVLGL 99 (365)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHhcCCCEEEEc
Confidence 345678899999999987
No 32
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=66.66 E-value=22 Score=28.58 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=54.9
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--C
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS--I 139 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~--P 139 (243)
.+.++|++ .+.+++..........|.+-.+++++..|++ ....... .|+.+...+.+.+++++.. |
T Consensus 114 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~ 181 (272)
T 3o74_A 114 SLLSSAPR-SIALIGARPELSVSQARAGGFDEALQGYTGE---VRRYQGE--------AFSRECGQRLMQQLIDDLGGLP 181 (272)
T ss_dssp HHHTTCCS-EEEEEEECTTSHHHHHHHHHHHHHTTTCCSE---EEEEEES--------SSSHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHCCCc-EEEEEecCCCCccHHHHHHHHHHHHHHcCCC---hheeecC--------CCCHHHHHHHHHHHHhcCCCCC
Confidence 44566764 2333332222234567888889998888873 2222111 1355667778888888775 9
Q ss_pred CEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC--CCceEEee
Q 026131 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS--ERNIEAWE 179 (243)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~--~~~~~~ye 179 (243)
|.|++.+ |. .+..+.+++++.+ +.++.+.-
T Consensus 182 ~ai~~~~--------d~--~a~g~~~al~~~g~vp~di~vvg 213 (272)
T 3o74_A 182 DALVTTS--------YV--LLQGVFDTLQARPVDSRQLQLGT 213 (272)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHTSCGGGCCCEEEE
T ss_pred cEEEEeC--------ch--HHHHHHHHHHHcCCCccceEEEE
Confidence 9999862 32 3444556665543 34454443
No 33
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=66.31 E-value=19 Score=29.43 Aligned_cols=74 Identities=22% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+++++..........|.+-.+++++..|++........ ..++.+...+.+.+++++. +||
T Consensus 125 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 194 (292)
T 3k4h_A 125 YLISLGHK-QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILH---------FDFSRESGQQAVEELMGLQQPPT 194 (292)
T ss_dssp HHHHTTCC-CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCc-eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEe---------cCCCHHHHHHHHHHHHcCCCCCc
Confidence 44566765 444444333233456788888999988887432111111 1134556677788888765 789
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 195 ai~~~ 199 (292)
T 3k4h_A 195 AIMAT 199 (292)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99886
No 34
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.60 E-value=39 Score=27.18 Aligned_cols=73 Identities=5% Similarity=-0.041 Sum_probs=41.5
Q ss_pred HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE
Q 026131 63 LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL 141 (243)
Q Consensus 63 ~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~ 141 (243)
+.+.|++ .+.+++..........|.+-.+++++..|++........ . .|+.+...+.+.+++++. +||.
T Consensus 115 L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~a 184 (275)
T 3d8u_A 115 LIEQGFK-NVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTH-E--------APSSQLGAEGLAKLLLRDSSLNA 184 (275)
T ss_dssp HHTTTCC-CEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECS-S--------CCCHHHHHHHHHHHHTTCTTCCE
T ss_pred HHHCCCC-eEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEe-C--------CCChhHHHHHHHHHHhCCCCCCE
Confidence 4456654 233343222222356788888899988887533222211 1 134455566677777654 5899
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 185 i~~~ 188 (275)
T 3d8u_A 185 LVCS 188 (275)
T ss_dssp EEES
T ss_pred EEEc
Confidence 9886
No 35
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=65.41 E-value=19 Score=30.29 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=14.4
Q ss_pred HHHHHHHhcCCCEEEeeCC
Q 026131 129 IVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~ 147 (243)
.+.+++++.+||+|+++.+
T Consensus 75 ~l~~~l~~~~~Dvi~~~~~ 93 (342)
T 2iuy_A 75 EIERWLRTADVDVVHDHSG 93 (342)
T ss_dssp HHHHHHHHCCCSEEEECSS
T ss_pred HHHHHHHhcCCCEEEECCc
Confidence 5667777888888888753
No 36
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=63.15 E-value=69 Score=27.12 Aligned_cols=76 Identities=18% Similarity=0.148 Sum_probs=44.7
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~ 138 (243)
..+.+.|++ .+.+++....... ...|.+-.+++++..|++..........+ |+.+...+.+.+++++ -+
T Consensus 180 ~~L~~~G~r-~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~ 250 (355)
T 3e3m_A 180 NALLARGFR-KIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPP--------LSIEDGVAAAELILQEYPD 250 (355)
T ss_dssp HHHHHTTCC-SEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSS--------CCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCC-eEEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecCC--------CCHHHHHHHHHHHHcCCCC
Confidence 345567764 2233332222222 57888999999999998644322222111 3445556677777776 47
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 251 ~~ai~~~ 257 (355)
T 3e3m_A 251 TDCIFCV 257 (355)
T ss_dssp CCEEEES
T ss_pred CcEEEEC
Confidence 8999986
No 37
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=63.03 E-value=26 Score=29.51 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=42.1
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++........ ..|+.+...+.+.+++++ +||.
T Consensus 174 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~-~~~a 242 (332)
T 2o20_A 174 KLIDSGNK-KIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFE---------GNYSYEQGKALAERLLER-GATS 242 (332)
T ss_dssp HHHHTTCS-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC---------SCCSHHHHHHHHHHHHHT-TCCE
T ss_pred HHHHCCCC-eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCCHHHHHHHHHHHhcc-CCCE
Confidence 45566764 233443222222356788888899988887432110110 013444556667777777 9999
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
||+.
T Consensus 243 i~~~ 246 (332)
T 2o20_A 243 AVVS 246 (332)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9986
No 38
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=62.75 E-value=12 Score=29.73 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=39.0
Q ss_pred cEEEEEEeCCC-------C-CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 026131 69 NLHILCMSNGN-------A-DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (243)
Q Consensus 69 ~V~vv~lT~G~-------~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P 139 (243)
+..+.++|.|+ . +.....-..-+.+.++.+|+ ++.... .|| +.+++.+.|.+.+.+.+.
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~~~~~ 82 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEV 82 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTC
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCC
Confidence 45566666665 2 33323333345566777888 333332 233 345778888888765558
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
|+|+|.
T Consensus 83 DlVitt 88 (178)
T 2pjk_A 83 DVIIST 88 (178)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 999997
No 39
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=62.31 E-value=23 Score=28.11 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=46.2
Q ss_pred EEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 71 HILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 71 ~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.++|.|+. +.....-..-+.+.++.+|+ ++.... .+| +.+++.+.|.+.+.+ .|+|+|.
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~I~~~l~~a~~~--~DlVitt- 69 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGY---QVRRGFVVMD---------DLDEIGWAFRVALEV--SDLVVSS- 69 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHH--CSEEEEE-
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhc--CCEEEEc-
Confidence 4455566642 33333334445667777898 333333 233 345788888888775 8999997
Q ss_pred CCCCC-CCchHHHHHHHHHHHHh
Q 026131 147 NYGVS-GHCNHRDVHHGIWSYLN 168 (243)
Q Consensus 147 ~~g~d-~H~DH~~~~~av~~a~~ 168 (243)
.|.+ ++-|+ +.+++.+++.
T Consensus 70 -GG~g~~~~D~--T~ea~a~~~~ 89 (172)
T 3kbq_A 70 -GGLGPTFDDM--TVEGFAKCIG 89 (172)
T ss_dssp -SCCSSSTTCC--HHHHHHHHHT
T ss_pred -CCCcCCcccc--hHHHHHHHcC
Confidence 3432 34454 5566666653
No 40
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=61.14 E-value=43 Score=28.97 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=40.0
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
| +|+++++-.+. ...+.+.+...|+ ++++..+.+.+. ..+.+...+.|.++ +.+||+|++.
T Consensus 29 g-~V~av~~G~~~--------~~~~~~~a~a~Ga--Dkv~~v~d~~l~-----~~~~~~~a~~La~~--~~~pd~VL~g 89 (307)
T 1efp_A 29 G-DVTVLCAGASA--------KAAAEEAAKIAGV--AKVLVAEDALYG-----HRLAEPTAALIVGL--AGDYSHIAAP 89 (307)
T ss_dssp S-CEEEEEEETTC--------HHHHHHHHTSTTE--EEEEEEECGGGT-----TCCHHHHHHHHHHH--HTTCSEEEEE
T ss_pred C-CEEEEEECCch--------HHHHHHHHHhcCC--CEEEEecCchhc-----cCCHHHHHHHHHHH--ccCCCEEEEe
Confidence 5 78877776531 1222445566799 788888865542 12456667777777 5699999987
No 41
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=60.29 E-value=71 Score=26.32 Aligned_cols=87 Identities=7% Similarity=0.085 Sum_probs=47.5
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..+|+++++.--++ ++-..|..+.+. +.+|. .++|+-.. . ...+.|+..|+| +..++..++.
T Consensus 21 ~~~rI~~l~SG~g~---~~~~~l~~l~~~~~~~~I~-~Vvt~~~~-~-------~~~~~A~~~gIp---~~~~~~~~~~- 84 (229)
T 3auf_A 21 HMIRIGVLISGSGT---NLQAILDGCREGRIPGRVA-VVISDRAD-A-------YGLERARRAGVD---ALHMDPAAYP- 84 (229)
T ss_dssp TCEEEEEEESSCCH---HHHHHHHHHHTTSSSEEEE-EEEESSTT-C-------HHHHHHHHTTCE---EEECCGGGSS-
T ss_pred CCcEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEE-EEEcCCCc-h-------HHHHHHHHcCCC---EEEECccccc-
Confidence 34588888544332 133455555544 34554 34455321 1 124466778993 4444432221
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.++.-+.+.+.+++++||+|++..
T Consensus 85 ------~r~~~~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 85 ------SRTAFDAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp ------SHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ------chhhccHHHHHHHHhcCCCEEEEcC
Confidence 2234445677888899999999863
No 42
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=60.28 E-value=31 Score=28.42 Aligned_cols=74 Identities=11% Similarity=-0.111 Sum_probs=42.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++........ ..++.+...+.+.+++++ -+||
T Consensus 120 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 189 (294)
T 3qk7_A 120 RLLELGHQ-RIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQK---------ADPTRPGGYLAASRLLALEVPPT 189 (294)
T ss_dssp HHHHTTCC-CEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEE---------ECSSHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHCCCc-eEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeec---------CCCCHHHHHHHHHHHHcCCCCCc
Confidence 34556654 223333222222456788888899988887432111111 113445666777888876 4789
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.||+.
T Consensus 190 ai~~~ 194 (294)
T 3qk7_A 190 AIITD 194 (294)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99986
No 43
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=59.70 E-value=17 Score=29.78 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=28.5
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.|+..|+| +..++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 44 ~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 44 DKAERAGIP---TRVINHKLYK-------NRVEFDSAIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHcCCC---EEEECccccC-------chhhhhHHHHHHHHhcCCCEEEEcc
Confidence 566788994 4445533321 2333445677888999999999873
No 44
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=59.56 E-value=36 Score=27.44 Aligned_cols=73 Identities=7% Similarity=-0.092 Sum_probs=43.9
Q ss_pred HHHhCCCcEEEEEEeCCC-C---CCchH-HHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHHH
Q 026131 62 YLTSRRHNLHILCMSNGN-A---DGMGN-IRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~-~---~~~~~-~R~~E~~~A~~~LGv~~~~~-~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~ 135 (243)
.+.+.|++ .+.+++... . ..... .|.+-.+++++..|++.... .+.+ .|+.+...+.+.++++
T Consensus 108 ~L~~~G~~-~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~l~ 176 (276)
T 2h0a_A 108 YLARFPGP-IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYIT----------RHSQEGGRLALRHFLE 176 (276)
T ss_dssp HHTTSSSC-EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEE----------CSSHHHHHHHHHHHHT
T ss_pred HHHHcCCC-eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeec----------CCChHHHHHHHHHHHh
Confidence 34567876 455555433 3 34567 88899999999998743211 1111 1344555666777776
Q ss_pred hc-CCCEEEee
Q 026131 136 NC-SIDLIITF 145 (243)
Q Consensus 136 ~~-~Pd~V~t~ 145 (243)
+. +||.|++.
T Consensus 177 ~~~~~~ai~~~ 187 (276)
T 2h0a_A 177 KASPPLNVFAG 187 (276)
T ss_dssp TCCSSEEEECS
T ss_pred CCCCCCEEEEC
Confidence 54 58888865
No 45
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=59.24 E-value=41 Score=28.40 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=46.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++ ....+.+ |+.+...+.+.+++++..||.
T Consensus 168 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~~--------~~~~~~~~~~~~ll~~~~~~a 234 (333)
T 3jvd_A 168 SVLGGSGM-NIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFGH--------YSVESGEEMAQVVFNNGLPDA 234 (333)
T ss_dssp HHCCSSSC-EEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEECC--------SSHHHHHHHHHHHHHTCCCSE
T ss_pred HHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecCC--------CCHHHHHHHHHHHhcCCCCcE
Confidence 45567875 3455554433335678899999999999983 2221111 345566777888888777999
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
||+.
T Consensus 235 i~~~ 238 (333)
T 3jvd_A 235 LIVA 238 (333)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9986
No 46
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=58.96 E-value=75 Score=26.75 Aligned_cols=94 Identities=14% Similarity=0.178 Sum_probs=55.8
Q ss_pred CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeC
Q 026131 68 HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFD 146 (243)
Q Consensus 68 ~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d 146 (243)
+.-.+++++..........|.+-++++++..|. ......-+. .|+.+...+.+.+++++. +||.|++.+
T Consensus 144 ~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~L~~~~~~~aI~~~~ 213 (350)
T 3h75_A 144 HGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ--VHLRQLVYG--------EWNRERAYRQAQQLLKRYPKTQLVWSAN 213 (350)
T ss_dssp CCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT--EEEEEEEEC--------TTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--eEEEEEeeC--------CCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 435667776443334567888999999999886 222222111 245667778888888875 578888752
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhcCC---CceEEeeeh
Q 026131 147 NYGVSGHCNHRDVHHGIWSYLNGTSE---RNIEAWELM 181 (243)
Q Consensus 147 ~~g~d~H~DH~~~~~av~~a~~~~~~---~~~~~ye~~ 181 (243)
|. .+..+.+|++..+. .++.+.-..
T Consensus 214 --------d~--~a~g~~~al~~~G~~vP~di~vvg~d 241 (350)
T 3h75_A 214 --------DE--MALGAMQAARELGRKPGTDLLFSGVN 241 (350)
T ss_dssp --------HH--HHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred --------hH--HHHHHHHHHHHcCCCCCCCeEEEecC
Confidence 33 33445555554432 355554443
No 47
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=58.81 E-value=38 Score=27.88 Aligned_cols=95 Identities=8% Similarity=0.156 Sum_probs=54.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc----
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC---- 137 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~---- 137 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++. .... ..++.+...+.+.+++++.
T Consensus 125 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 191 (295)
T 3hcw_A 125 HVIEQGVD-ELIFITEKGNFEVSKDRIQGFETVASQFNLDY---QIIE---------TSNEREVILNYMQNLHTRLKDPN 191 (295)
T ss_dssp HHHHHCCS-EEEEEEESSCCHHHHHHHHHHHHHHHHTTCEE---EEEE---------ECSCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHcCCc-cEEEEcCCccchhHHHHHHHHHHHHHHcCCCe---eEEe---------ccCCHHHHHHHHHHHHhhcccCC
Confidence 45566875 33444422222345778888999999999842 2111 0134455667777777765
Q ss_pred CCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEee
Q 026131 138 SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye 179 (243)
+||.||+.+ |. .+..+.+++++.+ +.++.+.-
T Consensus 192 ~~~ai~~~~--------d~--~A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 192 IKQAIISLD--------AM--LHLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp SCEEEEESS--------HH--HHHHHHHHHHHTTCCTTTTEEEEE
T ss_pred CCcEEEECC--------hH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 699998862 32 3344555555443 34555543
No 48
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=57.34 E-value=76 Score=25.71 Aligned_cols=84 Identities=12% Similarity=0.173 Sum_probs=46.1
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
+|+.++...-.+ ++-..|..+.+. +.+|.. ++|+-.. . ...+.|+..|+| +..++..++.
T Consensus 4 ~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~-Vit~~~~--~------~v~~~A~~~gIp---~~~~~~~~~~--- 65 (212)
T 3av3_A 4 KRLAVFASGSGT---NFQAIVDAAKRGDLPARVAL-LVCDRPG--A------KVIERAARENVP---AFVFSPKDYP--- 65 (212)
T ss_dssp EEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEE-EEESSTT--C------HHHHHHHHTTCC---EEECCGGGSS---
T ss_pred cEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEE-EEeCCCC--c------HHHHHHHHcCCC---EEEeCccccc---
Confidence 356666554333 133445555544 345543 4565321 1 234567778994 4444432221
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+.++.-+.+.+.+++++||+|++.
T Consensus 66 ----~~~~~~~~~~~~l~~~~~Dliv~a 89 (212)
T 3av3_A 66 ----SKAAFESEILRELKGRQIDWIALA 89 (212)
T ss_dssp ----SHHHHHHHHHHHHHHTTCCEEEES
T ss_pred ----chhhhHHHHHHHHHhcCCCEEEEc
Confidence 233444567788889999999986
No 49
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=56.73 E-value=37 Score=27.65 Aligned_cols=74 Identities=8% Similarity=-0.033 Sum_probs=42.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccC----ChHHHHHHHHHHHHh
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLW----NHKSLAKIVEEEVVN 136 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~pd~~d~~~~~~----~~~~l~~~l~~~i~~ 136 (243)
.+.+.|++ .+.+++..........|.+.++++++..|++... ....... .| +.+...+.+.+++++
T Consensus 116 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~--------~~~~~~~~~~~~~~~~~~l~~ 186 (288)
T 2qu7_A 116 RVLESTCK-EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQ--------QLGTNAQIYSGYEATKTLLSK 186 (288)
T ss_dssp HHHTSSCC-CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCS--------SCSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCC-cEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccC--------CccccCCHHHHHHHHHHHHhc
Confidence 44566764 3344443222234567888899999998874221 1110000 12 334455667778877
Q ss_pred cCCCEEEee
Q 026131 137 CSIDLIITF 145 (243)
Q Consensus 137 ~~Pd~V~t~ 145 (243)
+||.||+.
T Consensus 187 -~~~ai~~~ 194 (288)
T 2qu7_A 187 -GIKGIVAT 194 (288)
T ss_dssp -TCCEEEEC
T ss_pred -CCCEEEEC
Confidence 99999986
No 50
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.06 E-value=56 Score=26.67 Aligned_cols=86 Identities=10% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc---CCCEE
Q 026131 66 RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC---SIDLI 142 (243)
Q Consensus 66 ~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~---~Pd~V 142 (243)
.|+ ..+++++..........|.+-++++++..|.+.+..... .. .|+.+...+.+.+++++. +||.|
T Consensus 138 ~g~-~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~-~~--------~~~~~~~~~~~~~~l~~~~~~~~~ai 207 (309)
T 2fvy_A 138 DGQ-IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD-TA--------MWDTAQAKDKMDAWLSGPNANKIEVV 207 (309)
T ss_dssp SSS-EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEE-EC--------TTCHHHHHHHHHHHHTSTTGGGCCEE
T ss_pred CCc-eEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEe-cC--------CCCHHHHHHHHHHHHHhCCCCCccEE
Confidence 454 455555543223345778888999999998732111111 11 134556667788888764 68999
Q ss_pred EeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 143 ITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 143 ~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
++. .|..+ ..+.++++..+
T Consensus 208 ~~~--------~d~~a--~g~~~al~~~g 226 (309)
T 2fvy_A 208 IAN--------NDAMA--MGAVEALKAHN 226 (309)
T ss_dssp EES--------SHHHH--HHHHHHHHHTT
T ss_pred EEC--------CchhH--HHHHHHHHHcC
Confidence 985 23333 34555665544
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=56.03 E-value=48 Score=27.07 Aligned_cols=98 Identities=7% Similarity=0.053 Sum_probs=53.1
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++... ..... ..++.+...+.+.+++++. +||
T Consensus 121 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~~~~------~~~~~~~~~~~~~~~l~~~~~~~ 190 (288)
T 3gv0_A 121 RLAQCGRK-RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFP---IDAVT------IETPLEKIRDFGQRLMQSSDRPD 190 (288)
T ss_dssp HHHHTTCC-EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECC---CCSCC------TTSCHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHCCCC-eEEEEcCCcccchHHHHHHHHHHHHHHcCCCcch---hheec------cccchHHHHHHHHHHHhCCCCCc
Confidence 34456654 3344433222224567888888888888873111 10000 1245566677788888764 689
Q ss_pred EEEeeCCCCCCCCchHHHHHHHHHHHHhhcC---CCceEEee
Q 026131 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (243)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~---~~~~~~ye 179 (243)
.|++.+ |.. +..+.+++++.+ +.++.+.-
T Consensus 191 ai~~~~--------d~~--A~g~~~al~~~g~~vP~di~vig 222 (288)
T 3gv0_A 191 GIVSIS--------GSS--TIALVAGFEAAGVKIGEDVDIVS 222 (288)
T ss_dssp EEEESC--------HHH--HHHHHHHHHTTTCCTTTSCEEEE
T ss_pred EEEEcC--------cHH--HHHHHHHHHHcCCCCCCceEEEE
Confidence 999862 333 334556665543 23454443
No 52
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=54.58 E-value=53 Score=28.43 Aligned_cols=85 Identities=12% Similarity=0.273 Sum_probs=49.6
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-C-chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-G-MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~-~-~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~ 116 (243)
..|++|++.. .+ .-++|..+.++|++|. .++|..+.. + -.+.......+.|..+|++ + +...+.
T Consensus 2 ~mrivf~Gtp----~f-a~~~L~~L~~~~~~v~-~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp---v--~~~~~~--- 67 (314)
T 3tqq_A 2 SLKIVFAGTP----QF-AVPTLRALIDSSHRVL-AVYTQPDRPSGRGQKIMESPVKEIARQNEIP---I--IQPFSL--- 67 (314)
T ss_dssp CCEEEEEECS----GG-GHHHHHHHHHSSSEEE-EEECCCC----------CCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CcEEEEECCC----HH-HHHHHHHHHHCCCeEE-EEEeCCCCccccCCccCCCHHHHHHHHcCCC---E--ECcccC---
Confidence 4688888875 23 3478889999998874 456654321 1 1122334456778889994 2 222221
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+ .+.+.+++.+||++++..
T Consensus 68 -----~~~----~~~~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 68 -----RDE----VEQEKLIAMNADVMVVVA 88 (314)
T ss_dssp -----SSH----HHHHHHHTTCCSEEEEES
T ss_pred -----CCH----HHHHHHHhcCCCEEEEcC
Confidence 112 245677889999998874
No 53
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=53.58 E-value=30 Score=28.19 Aligned_cols=53 Identities=6% Similarity=-0.001 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
...|.+-.+++++..|++........ ..++.+...+.+.+++++. +||.|++.
T Consensus 142 ~~~R~~gf~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 195 (289)
T 3g85_A 142 MDNRNKGFIETCHKNGIKISENHIIA---------AENSIHGGVDAAKKLMKLKNTPKALFCN 195 (289)
T ss_dssp HHHHHHHHHHHHHHTTCBCCGGGEEE---------CCSSHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred HHHHHHHHHHHHHHcCCCCChhheec---------cCCCHHHHHHHHHHHHcCCCCCcEEEEc
Confidence 46688888888888887422111111 0134456667777777764 68999886
No 54
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=53.35 E-value=57 Score=26.62 Aligned_cols=74 Identities=11% Similarity=0.032 Sum_probs=41.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+.+++..........|.+..+++++..|++........ . .|+.+...+.+.+++++. +||
T Consensus 122 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~ 191 (290)
T 2rgy_A 122 TLIEHGHR-KLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE-S--------DFSPEGGYAATCQLLESKAPFT 191 (290)
T ss_dssp HHHHTTCC-SEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE-C--------CSSHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHCCCc-eEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe-c--------CCChhHHHHHHHHHHhCCCCCc
Confidence 44566754 233343322222356788888899988887422111111 0 134445566677777764 689
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.||+.
T Consensus 192 ai~~~ 196 (290)
T 2rgy_A 192 GLFCA 196 (290)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99986
No 55
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=53.07 E-value=66 Score=27.61 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....+.++--|+. ......|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=.+-+
T Consensus 23 v~~l~~~g~~P~Lavilvg~dpas~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~i~~lN~D~~ 90 (281)
T 2c2x_A 23 VAALDAAGRTPGLGTILVGDDPGSQAYVRGK--HADCAKVGI---TSIRRDLPAD-------ISTATLNETIDELNANPD 90 (281)
T ss_dssp HHHHHHTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCceEEEEEeCCChhhHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCCCC
Confidence 455666686666776666654 234455554 478999999 4556666541 255788888888877777
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHG 162 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~a 162 (243)
.+=|+.+-| ...|.|-..+-++
T Consensus 91 v~GIlvqlP--lP~~id~~~i~~~ 112 (281)
T 2c2x_A 91 CTGYIVQLP--LPKHLDENAALER 112 (281)
T ss_dssp CCEEEECSC--CCTTSCHHHHHHH
T ss_pred CCEEEEeCC--CCCCCCHHHHHhh
Confidence 787888854 4467776664433
No 56
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=52.82 E-value=85 Score=25.47 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=28.1
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.|+..|+| +...+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 43 ~~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 43 LERARQAGIA---THTLIASAFD-------SREAYDRELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHTTCE---EEECCGGGCS-------SHHHHHHHHHHHHGGGCCSEEEESS
T ss_pred HHHHHHcCCc---EEEeCccccc-------chhhccHHHHHHHHhcCCCEEEEeC
Confidence 4556778993 4444322221 2234445577888899999999863
No 57
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.80 E-value=89 Score=25.21 Aligned_cols=89 Identities=7% Similarity=0.016 Sum_probs=52.4
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCC
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDN 147 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~ 147 (243)
-.+++++..........|.+-++++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|++.+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~- 203 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLS---IVDSVS--------GNYDPVTSERVMRQVIDSGIPFDAVYCHN- 203 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHTTCCCSEEEESS-
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE---Eeeecc--------CCCCHHHHHHHHHHHHHhCCCCCEEEECC-
Confidence 45666664333345677888899999888 762 221111 1145567778888888774 689998862
Q ss_pred CCCCCCchHHHHHHHHHHHHhhcCCCceEEee
Q 026131 148 YGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (243)
Q Consensus 148 ~g~d~H~DH~~~~~av~~a~~~~~~~~~~~ye 179 (243)
|.. +..+.++++..+.+++.+.-
T Consensus 204 -------d~~--a~g~~~al~~~g~~di~vig 226 (293)
T 3l6u_A 204 -------DDI--AMGVLEALKKAKISGKIVVG 226 (293)
T ss_dssp -------HHH--HHHHHHHHHHTTCCCCEEEE
T ss_pred -------chH--HHHHHHHHHhCCCCCeEEEE
Confidence 333 33455556554433444443
No 58
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=52.18 E-value=45 Score=26.05 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=40.4
Q ss_pred EEEEEEeCCCCCC-chHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 70 LHILCMSNGNADG-MGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 70 V~vv~lT~G~~~~-~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
..+.++|.|+.-+ ....-..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~a~~~~~~DlVitt-- 76 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGH---HVVDKAIVKE---------NRYAIRAQVSAWIASDDVQVVLIT-- 76 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHSSSCCEEEEE--
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEeC--
Confidence 3445555565422 222222335556667888 333322 233 346788888888776568999997
Q ss_pred CCCC-CCchH
Q 026131 148 YGVS-GHCNH 156 (243)
Q Consensus 148 ~g~d-~H~DH 156 (243)
.|.+ ++-|+
T Consensus 77 GG~g~~~~D~ 86 (172)
T 1mkz_A 77 GGTGLTEGDQ 86 (172)
T ss_dssp SCCSSSTTCC
T ss_pred CCCCCCCCCC
Confidence 3422 44454
No 59
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=51.69 E-value=48 Score=28.87 Aligned_cols=35 Identities=11% Similarity=0.127 Sum_probs=21.6
Q ss_pred CCcEEEEecCc-hhhhcchHHHHHHHHhCCCcEEEEE
Q 026131 39 KKNVLLVIAHP-DDESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 39 ~~~vL~v~aHP-DDE~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
.++||++ +.| -=-+.-+-....+|.++|++|++++
T Consensus 12 ~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~ 47 (424)
T 2iya_A 12 PRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAI 47 (424)
T ss_dssp CCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEe
Confidence 3578876 444 1223344556666778999987664
No 60
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=51.07 E-value=20 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=29.9
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeC
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSN 77 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~ 77 (243)
+++|+|.+||+-+.-.+...+....+...+|.++-+-+
T Consensus 1 MkiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~ 38 (177)
T 3ha2_A 1 MQTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVA 38 (177)
T ss_dssp CCEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCT
T ss_pred CeEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCC
Confidence 47999999999333467778887777777888888887
No 61
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=49.83 E-value=77 Score=23.53 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=53.6
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
+..+++|..--|-|- .--.|....+.|.+|.+++-... ..|++|+..-.+.-|+ ++.
T Consensus 77 qldvvvivttddkew--ikdfieeakergvevfvvynnkd------ddrrkeaqqefrsdgv---dvr------------ 133 (162)
T 2l82_A 77 QLDVVVIVTTDDKEW--IKDFIEEAKERGVEVFVVYNNKD------DDRRKEAQQEFRSDGV---DVR------------ 133 (162)
T ss_dssp TCCEEEEEECCCHHH--HHHHHHHHHHTTCEEEEEEECSC------HHHHHHHHHHHCCSSC---EEE------------
T ss_pred CCcEEEEEecCcHHH--HHHHHHHHHhcCcEEEEEecCCC------chhHHHHHHHhhhcCc---eee------------
Confidence 345666666645554 46788888889999988875443 6788888776666666 222
Q ss_pred ccCChHHHHHHHHHHHHhcC
Q 026131 119 KLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~ 138 (243)
+..+.+++++.+.+.+++..
T Consensus 134 tvsdkeelieqvrrfvrkvg 153 (162)
T 2l82_A 134 TVSDKEELIEQVRRFVRKVG 153 (162)
T ss_dssp EESSHHHHHHHHHHHHHHHT
T ss_pred ecCCHHHHHHHHHHHHHHhc
Confidence 22356789999999988754
No 62
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=49.62 E-value=54 Score=27.48 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=44.0
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 026131 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~ 138 (243)
...+.+.|++ .+.+++..........|.+-.+++++..|++........ ..|+.+...+.+.+++++ -+
T Consensus 173 ~~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~ 242 (338)
T 3dbi_A 173 VAELINAGHQ-EIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAK 242 (338)
T ss_dssp HHHHHHTTCC-SEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCC-EEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEe---------CCCCHHHHHHHHHHHHcCCCC
Confidence 3345567764 233343322223456788889999999987432111111 113455666777777764 46
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 243 ~~ai~~~ 249 (338)
T 3dbi_A 243 FSALVAS 249 (338)
T ss_dssp CSEEEES
T ss_pred CeEEEEC
Confidence 8999986
No 63
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=49.05 E-value=85 Score=25.19 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=44.3
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.++|++ .+++++... .. ...|.+-++++++..|.+.. ... .. ..++.+...+.+.+++++. +||
T Consensus 112 ~L~~~G~~-~i~~i~~~~-~~-~~~R~~gf~~~l~~~~~~~~--~~~-~~-------~~~~~~~~~~~~~~~l~~~~~~~ 178 (280)
T 3gyb_A 112 HLIDLGHT-HIAHLRVGS-GA-GLRRFESFEATMRAHGLEPL--SND-YL-------GPAVEHAGYTETLALLKEHPEVT 178 (280)
T ss_dssp HHHHTTCC-SEEEECCSS-HH-HHHHHHHHHHHHHHTTCCCE--ECC-CC-------SCCCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHCCCC-eEEEEeCCC-ch-HHHHHHHHHHHHHHcCcCCC--ccc-cc-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 45567765 233443322 22 77888999999999998421 111 11 1135566777788888775 689
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 179 ai~~~ 183 (280)
T 3gyb_A 179 AIFSS 183 (280)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99886
No 64
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=49.00 E-value=47 Score=26.91 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=39.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (243)
.+.+.|++ .+.+++..........|.+..+++++..|++...... +. ..|+.+...+.+.+++.+ -+||
T Consensus 120 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~--~~-------~~~~~~~~~~~~~~~l~~~~~~~ 189 (289)
T 1dbq_A 120 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--VQ-------GDFEPESGYRAMQQILSQPHRPT 189 (289)
T ss_dssp HHHHTTCC-SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGB--CC-------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-eEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHe--Ee-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 34556764 2333432222223467888888998888873211101 10 113445566667777765 4689
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.|++.
T Consensus 190 ai~~~ 194 (289)
T 1dbq_A 190 AVFCG 194 (289)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99885
No 65
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=48.76 E-value=1.1e+02 Score=24.85 Aligned_cols=86 Identities=14% Similarity=0.234 Sum_probs=46.7
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEE-EEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLH-ILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~-vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
+|+++++..-++ .+-..|..+.+.+.++. +.++|+.... ...+.|+..|+| +..++..+..
T Consensus 2 ~rI~vl~SG~g~---~~~~~l~~l~~~~~~~~i~~Vvs~~~~~--------~~~~~A~~~gIp---~~~~~~~~~~---- 63 (216)
T 2ywr_A 2 LKIGVLVSGRGS---NLQAIIDAIESGKVNASIELVISDNPKA--------YAIERCKKHNVE---CKVIQRKEFP---- 63 (216)
T ss_dssp EEEEEEECSCCH---HHHHHHHHHHTTSSCEEEEEEEESCTTC--------HHHHHHHHHTCC---EEECCGGGSS----
T ss_pred CEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEEEEEeCCCCh--------HHHHHHHHcCCC---EEEeCccccc----
Confidence 366666444332 13345555555555332 3455654221 124566778994 4444432221
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.++.-+.+.+.+++.+||+|++..
T Consensus 64 ---~r~~~~~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 64 ---SKKEFEERMALELKKKGVELVVLAG 88 (216)
T ss_dssp ---SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ---chhhhhHHHHHHHHhcCCCEEEEeC
Confidence 2334445577888899999999863
No 66
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=48.30 E-value=43 Score=26.31 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchH
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNH 156 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH 156 (243)
+.+++.+.|.+.+.+.+.|+|+|. .|.+ ++-|+
T Consensus 52 d~~~I~~~l~~~~~~~~~DlVitt--GG~g~g~~D~ 85 (178)
T 2pbq_A 52 ERDLIEKTLIELADEKGCSLILTT--GGTGPAPRDV 85 (178)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc
Confidence 346788888888775578999997 4422 44554
No 67
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=48.09 E-value=1.2e+02 Score=25.65 Aligned_cols=55 Identities=9% Similarity=0.058 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
....|.+-.+++++..|++.....+.... .++.+.-.+.+.+++++. +||.||+.
T Consensus 220 ~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~ai~~~ 275 (366)
T 3h5t_A 220 VQRDRVRGAMEVFIEAGIDPGTVPIMECW--------INNRQHNFEVAKELLETHPDLTAVLCT 275 (366)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGSCEEEES--------SCCHHHHHHHHHHHHHHCTTCCEEEES
T ss_pred hHHHHHHHHHHHHHHCCCCCCcceEEEcC--------CCCHHHHHHHHHHHHcCCCCCcEEEEC
Confidence 45789999999999999854322122111 124445556677777654 68999986
No 68
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=47.75 E-value=1.1e+02 Score=24.65 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=52.7
Q ss_pred HHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-
Q 026131 62 YLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC- 137 (243)
Q Consensus 62 ~~~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~- 137 (243)
.+.+ .|++ .+++++..........|.+-.+++++.. |+ ...+-.-... ..++.+...+.+.+++++.
T Consensus 117 ~l~~~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~ 187 (291)
T 3l49_A 117 QMVADLGGKG-NVLVFNGFYSVPVCKIRYDQMKYVLEAFPDV-----KIIEPELRDV---IPNTIQSAYSNVTDMLTKYP 187 (291)
T ss_dssp HHHHHHTTCE-EEEEECSCTTSHHHHHHHHHHHHHHHTCTTE-----EECSSCBCCC---SSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCc-eEEEEeCCCCCchHHHHHHHHHHHHHHCCCC-----EEEeeeccCC---CCCCHHHHHHHHHHHHHhCC
Confidence 3445 5653 4444432222234566888888888877 34 2222110000 1134556677888888876
Q ss_pred ---CCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEEee
Q 026131 138 ---SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (243)
Q Consensus 138 ---~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~ye 179 (243)
+||.|++.+ |. .+..+.++++..+.+++.+.-
T Consensus 188 ~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~di~vvg 222 (291)
T 3l49_A 188 NEGDVGAIWACW--------DV--PMIGATQALQAAGRTDIRTYG 222 (291)
T ss_dssp STTSCCEEEESS--------HH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred CcCCcCEEEECC--------Cc--hHHHHHHHHHHcCCCCeEEEE
Confidence 589998862 33 334455566554433454443
No 69
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.46 E-value=52 Score=26.84 Aligned_cols=52 Identities=15% Similarity=0.066 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHHH-hc--CCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEVV-NC--SIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~-~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~-~~--~Pd~V~t~ 145 (243)
...|.+-.+++++..|++.... .+.+ .|+.+...+.+.++++ +. +||.||+.
T Consensus 140 ~~~R~~Gf~~~l~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~ai~~~ 195 (287)
T 3bbl_A 140 GNDRLQGYLEAMQTAQLPIETGYILRG----------EGTFEVGRAMTLHLLDLSPERRPTAIMTL 195 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEEC----------CSSHHHHHHHHHHHHTSCTTTSCSEEEES
T ss_pred HHHHHHHHHHHHHHcCCCCChhhEEeC----------CCCHHHHHHHHHHHHhhCCCCCCcEEEEC
Confidence 4677788888888888742211 1110 1344555667777776 54 68999986
No 70
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=47.11 E-value=98 Score=25.14 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=43.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (243)
.+.+.|++ .+.+++... ......|.+-.+++++..|++... .... . .++.+...+.+.+++++. +||
T Consensus 120 ~L~~~G~~-~I~~i~~~~-~~~~~~R~~Gf~~al~~~g~~~~~-~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~ 187 (289)
T 3k9c_A 120 HLTELGHR-NIAHIDGAD-APGGADRRAGFLAAMDRHGLSASA-TVVT-G--------GTTETEGAEGMHTLLEMPTPPT 187 (289)
T ss_dssp HHHHTTCC-SEEEECCTT-STTHHHHHHHHHHHHHHTTCGGGE-EEEC-C--------CSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-cEEEEeCCC-CccHHHHHHHHHHHHHHCCCCCCc-cEEE-C--------CCCHHHHHHHHHHHHcCCCCCC
Confidence 44566764 233333322 225678888899999999984322 2221 1 134456667777777754 689
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.||+.
T Consensus 188 ai~~~ 192 (289)
T 3k9c_A 188 AVVAF 192 (289)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99986
No 71
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=47.02 E-value=59 Score=28.23 Aligned_cols=85 Identities=13% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~-~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~ 116 (243)
..||+|++.. + ++-.+|..+.++|++|. .++|..+.. +.+ +.......+.|..+|+| + +...+.
T Consensus 7 ~mrivf~Gt~---~--fa~~~L~~L~~~~~~v~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~~~~~--- 72 (318)
T 3q0i_A 7 SLRIVFAGTP---D--FAARHLAALLSSEHEII-AVYTQPERPAGRGKKLTASPVKTLALEHNVP---V--YQPENF--- 72 (318)
T ss_dssp CCEEEEECCS---H--HHHHHHHHHHTSSSEEE-EEECCCC---------CCCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CCEEEEEecC---H--HHHHHHHHHHHCCCcEE-EEEcCCCCcccccccCCCCHHHHHHHHcCCC---E--EccCcC---
Confidence 5688888874 1 24477888888888874 456654321 111 11223456678889994 2 221111
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+ .+.+.+++.+||++++..
T Consensus 73 -----~~~----~~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 73 -----KSD----ESKQQLAALNADLMVVVA 93 (318)
T ss_dssp -----CSH----HHHHHHHTTCCSEEEESS
T ss_pred -----CCH----HHHHHHHhcCCCEEEEeC
Confidence 112 345677889999999863
No 72
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=46.28 E-value=31 Score=28.40 Aligned_cols=93 Identities=12% Similarity=0.056 Sum_probs=50.6
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC-C-CCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL-V-DFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~-p-d~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++........- + +.. . ....+.+.+.+++++. +
T Consensus 125 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~l~~~~~ 197 (301)
T 3miz_A 125 YLLERGHR-RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVG--A----ENNYVFAAATEMLKQDDR 197 (301)
T ss_dssp HHHTTTCC-SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTT--S----CEECHHHHHHHHHTSTTC
T ss_pred HHHHcCCC-eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcC--c----cccHHHHHHHHHHcCCCC
Confidence 45567875 4455553333334667889999999999985433322221 0 110 0 0011124556666544 7
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
||.||+.+ |. .+..+.+++++.+
T Consensus 198 ~~ai~~~~--------d~--~A~g~~~al~~~g 220 (301)
T 3miz_A 198 PTAIMSGN--------DE--MAIQIYIAAMALG 220 (301)
T ss_dssp CSEEEESS--------HH--HHHHHHHHHHTTT
T ss_pred CcEEEECC--------HH--HHHHHHHHHHHcC
Confidence 89999862 33 3445566666544
No 73
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.22 E-value=71 Score=25.95 Aligned_cols=74 Identities=16% Similarity=0.047 Sum_probs=41.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+.|++ .+.+++..........|.+-++++++..|++........ . .|+.+...+.+.++++.-+||.
T Consensus 119 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~a 188 (290)
T 3clk_A 119 LLINEGHR-QIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKP-G--------DYSYTSGEQAMKAFGKNTDLTG 188 (290)
T ss_dssp HHHTTTCC-SEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEEC-C--------CSSHHHHHHHHHHHCTTCCCSE
T ss_pred HHHHcCCC-EEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEc-C--------CCChhhHHHHHHHHhccCCCcE
Confidence 34556754 234444322233467888889999998887422110110 0 1344445556666665346899
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
|++.
T Consensus 189 i~~~ 192 (290)
T 3clk_A 189 IIAA 192 (290)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9886
No 74
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=45.95 E-value=42 Score=27.03 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchH
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNH 156 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH 156 (243)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++.|+
T Consensus 50 d~~~I~~al~~a~~~~~~DlVitT--GGtg~g~~D~ 83 (195)
T 1di6_A 50 EQAIIEQTLCELVDEMSCHLVLTT--GGTGPARRDV 83 (195)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCcc
Confidence 346788888888876689999997 4432 44454
No 75
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.93 E-value=89 Score=25.31 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=39.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH--HHHhc-C
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE--EVVNC-S 138 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~--~i~~~-~ 138 (243)
.+.+.|++ .+.+++..........|.+..+++++..|++.. +...+ |+.+...+.+.+ ++++. +
T Consensus 118 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~-----------~~~~~~~~~~~~~~~l~~~~~ 184 (285)
T 3c3k_A 118 QLVKSGKK-RIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RISYA-----------ENLDYMAGKLATFSLLKSAVK 184 (285)
T ss_dssp HHHHTTCC-CEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEEEC-----------SSSSHHHHHHHHHHHHSSSSC
T ss_pred HHHHcCCC-eEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-EeecC-----------CChHHHHHHHHHHHHHcCCCC
Confidence 34556754 223333222222356788888899988887433 21111 222334455666 66654 6
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 185 ~~ai~~~ 191 (285)
T 3c3k_A 185 PDAIFAI 191 (285)
T ss_dssp CSEEEES
T ss_pred CeEEEEC
Confidence 8999986
No 76
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=45.70 E-value=60 Score=24.70 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=45.4
Q ss_pred cEEEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C--CCEEEe
Q 026131 69 NLHILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S--IDLIIT 144 (243)
Q Consensus 69 ~V~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~--Pd~V~t 144 (243)
.+.++++|-|. -.+++.++++. +|- .+++..++++... +.+++.+.+.+.+++. . -.+++.
T Consensus 3 ~igiii~sHG~-------~A~gl~~~~~~i~G~-~~~v~av~~~~~~-------~~~~~~~~i~~~i~~~~~~~~gvliL 67 (144)
T 3lfh_A 3 EKFVLIITHGD-------FGKGLLSGAEVIIGK-QENVHTVGLNLGD-------NIEVVRKEVEKIIKEKLQEDKEIIIV 67 (144)
T ss_dssp CEEEEEEEETT-------HHHHHHHHHHHHHCC-CSSEEEEEECTTC-------CHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cceEEEEeCcH-------HHHHHHHHHHHHcCC-CCcEEEEEccCCC-------CHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 47788888873 24566666665 564 4688888876421 4567888888888887 4 346777
Q ss_pred eCCCCC
Q 026131 145 FDNYGV 150 (243)
Q Consensus 145 ~d~~g~ 150 (243)
.|-.|+
T Consensus 68 tDl~GG 73 (144)
T 3lfh_A 68 VDLFGG 73 (144)
T ss_dssp ESSSSS
T ss_pred EeCCCC
Confidence 776664
No 77
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=45.54 E-value=47 Score=26.52 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEee
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 62 d~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 62 EIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEc
Confidence 346788888888776679999997
No 78
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=45.48 E-value=96 Score=26.63 Aligned_cols=88 Identities=14% Similarity=0.147 Sum_probs=56.5
Q ss_pred HHHHHhCCCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
+.++.++|....+.++--|+.. .....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++-..-+
T Consensus 24 v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~~ 91 (285)
T 3p2o_A 24 NQFLKSKGIESCLAVILVGDNPASQTYVKSK--AKACEECGI---KSLVYHLNEN-------ITQNELLALINTLNHDDS 91 (285)
T ss_dssp HHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 4455566667777666666542 33445554 489999999 5566666541 255788888888877767
Q ss_pred CCEEEeeCCCCCCCCchHHHHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHH 161 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~ 161 (243)
.+=|+.+-|.. .|.|-..+-+
T Consensus 92 v~GIlvqlPlp--~~id~~~v~~ 112 (285)
T 3p2o_A 92 VHGILVQLPLP--DHICKDLILE 112 (285)
T ss_dssp CCEEEECSCCC--TTSCHHHHHH
T ss_pred CCEEEecCCCC--CCcCHHHHHh
Confidence 77788874433 5666555433
No 79
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=45.45 E-value=75 Score=27.88 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=56.2
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-cc
Q 026131 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KL 120 (243)
Q Consensus 58 gti~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~-~~ 120 (243)
+.+..+.++- .=++-++++.|+.. +.+-.+-.|..+-+.-+|+ ..+..++.|+.+|..+ +.
T Consensus 20 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A 97 (328)
T 1w1z_A 20 AALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEECKELYDLGI--QGIDLFGIPEQKTEDGSEA 97 (328)
T ss_dssp HHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHHHHHHHHHHHHHHTC--CEEEEEECCSSCCSSCGGG
T ss_pred hHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeEeCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCcccccc
Confidence 4555565442 12677888888763 1233444444555667899 5688888887665432 34
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
|+.+-++.+-.+.|++.-||+++..|
T Consensus 98 ~~~~g~v~rair~iK~~~p~l~vitD 123 (328)
T 1w1z_A 98 YNDNGILQQAIRAIKKAVPELCIMTD 123 (328)
T ss_dssp GCTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 67777888878888888899876544
No 80
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=45.43 E-value=90 Score=26.92 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=49.0
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC-CCch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA-DGMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~-~~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~ 116 (243)
+.|++|++.. + +++..+..+.++|++|. .++|+.+. .+.+ ........+.|...|+| + +. |+ .
T Consensus 3 ~mrIvf~Gt~-~----fa~~~L~~L~~~~~~i~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~-~~---~ 67 (314)
T 1fmt_A 3 SLRIIFAGTP-D----FAARHLDALLSSGHNVV-GVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP---V--FQ-PV---S 67 (314)
T ss_dssp CCEEEEEECS-H----HHHHHHHHHHHTTCEEE-EEECCCCBC------CBCCHHHHHHHHTTCC---E--EC-CS---C
T ss_pred CCEEEEEecC-H----HHHHHHHHHHHCCCcEE-EEEeCCCCccccccccCcCHHHHHHHHcCCc---E--Ee-cC---C
Confidence 4688888874 2 46788888888888764 45565432 1110 11112355677889994 2 22 21 1
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+ ..+ .+.+.+++.+||++++..
T Consensus 68 ~----~~~----~~~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 68 L----RPQ----ENQQLVAELQADVMVVVA 89 (314)
T ss_dssp S----CSH----HHHHHHHHTTCSEEEEES
T ss_pred C----CCH----HHHHHHHhcCCCEEEEee
Confidence 1 112 245567788999998864
No 81
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=45.09 E-value=11 Score=34.16 Aligned_cols=29 Identities=7% Similarity=0.067 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
.+.+.+..++++++||+|+.. .|.|.|.+
T Consensus 243 ~~~~~l~p~~~~F~PdlIvvs--aG~Da~~~ 271 (388)
T 3ew8_A 243 ICESVLKEVYQAFNPKAVVLQ--LGADTIAG 271 (388)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE--CCSTTBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEE--CCccCCCC
Confidence 344556778899999999987 67766654
No 82
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=45.07 E-value=45 Score=25.84 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHHH
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSY 166 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~a 166 (243)
+.+++.+.|.+.+...+.|+|+|. .|.+ ++-|+ +.+++.++
T Consensus 55 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~~a~~~~ 96 (167)
T 1uuy_A 55 EVERIKDILQKWSDVDEMDLILTL--GGTGFTPRDV--TPEATKKV 96 (167)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc--hHHHHHHH
Confidence 345778888887765579999997 3322 44554 34444443
No 83
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=45.03 E-value=1.2e+02 Score=24.56 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=29.0
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.|+..|+| ++..+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 51 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 51 AKAEAAGIA---TQVFKRKDFA-------SKEAHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------CHHHHHHHHHHHHHhcCCCEEEEec
Confidence 457778994 5555533321 2334446778888999999999873
No 84
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=45.03 E-value=82 Score=26.47 Aligned_cols=54 Identities=6% Similarity=0.004 Sum_probs=35.8
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
....|.+-.+++++..|++.....+.. ..|+.+.-.+.+.+++++. +||.||+.
T Consensus 200 ~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 254 (344)
T 3kjx_A 200 RARKRFEGFTEVLGKNGVEIEDREFYS---------GGSALAKGREMTQAMLERSPDLDFLYYS 254 (344)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSCEEECS---------SCCCHHHHHHHHHHHHHHSTTCCEEEES
T ss_pred cHHHHHHHHHHHHHHcCCCCChheEEe---------CCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 346788888899998888543333321 0134455667777888765 78999986
No 85
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=44.75 E-value=1.8e+02 Score=26.92 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=61.4
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCccccCChHHHHH
Q 026131 56 FSPTINYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGFDKLWNHKSLAK 128 (243)
Q Consensus 56 ~Ggti~~~~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~--~d~~~~~~~~~~l~~ 128 (243)
.||.+....++|+++.-.+......++. -+.=+.|+....+...+ +-.+|+.--. -+|.+. .+-++.+
T Consensus 48 ~~g~~~~a~~~g~elvp~l~A~A~P~G~V~~~aye~l~~eil~l~~a~p~---Dgv~L~LHGAmv~eg~~D--~EGdlL~ 122 (495)
T 3iuu_A 48 LSGIVKTAEALGYRCVPSISARARPGGAIEQKVFDNIVDEFVQAARMQDF---DAICLDLHGATLAEHTLD--TEGYLLS 122 (495)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEECSEECBCHHHHHHHHHHHHHHHHHSCC---SEEEEEECSCCCBSSCSS--HHHHHHH
T ss_pred hHHHHHHHHHCCcEEeeeEEEeecCCccccHHHHHHHHHHHHHHHhcCCC---CEEEEeccCcEeecCCCC--chHHHHH
Confidence 6788888888999988777776666542 12234565544445555 3456664211 011111 1124555
Q ss_pred HHHHHHHhcCCCE--EEeeCCCC-----------------CCCCchHHHHHHHHHHHH
Q 026131 129 IVEEEVVNCSIDL--IITFDNYG-----------------VSGHCNHRDVHHGIWSYL 167 (243)
Q Consensus 129 ~l~~~i~~~~Pd~--V~t~d~~g-----------------~d~H~DH~~~~~av~~a~ 167 (243)
++.+++ .||+ +.+.|+|+ .+.|.|-..+++-+.+.+
T Consensus 123 rvR~~v---Gp~vpI~~slDlH~Nvt~~mv~~aD~l~~yrtyPH~D~~etg~raa~lL 177 (495)
T 3iuu_A 123 RLREVV---GNDIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEETGVRAMTLL 177 (495)
T ss_dssp HHHHHH---TTTSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHh---CCCCeEEEEeCCCCCccHHHHhhCCEEEEcCCCCccCHHHHHHHHHHHH
Confidence 555443 5664 55677777 478999999888666654
No 86
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=44.47 E-value=65 Score=24.94 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=38.9
Q ss_pred EEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCC
Q 026131 71 HILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNY 148 (243)
Q Consensus 71 ~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~ 148 (243)
.+-++|.|+.- .....-..-+.+.++.+|+ ++.... .|| +.+++.+.|.+.+.+.+.|+|+|. .
T Consensus 15 rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~~~~~~~~DlVitt--G 80 (169)
T 1y5e_A 15 RCKIVTISDTRTEETDKSGQLLHELLKEAGH---KVTSYEIVKD---------DKESIQQAVLAGYHKEDVDVVLTN--G 80 (169)
T ss_dssp EEEEEEECSSCCTTTCHHHHHHHHHHHHHTC---EEEEEEEECS---------SHHHHHHHHHHHHTCTTCSEEEEE--C
T ss_pred EEEEEEEcCccCeeccChHHHHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEEc--C
Confidence 34455555432 2222222334556667788 233222 233 345778888887764578999997 4
Q ss_pred CCC-CCchH
Q 026131 149 GVS-GHCNH 156 (243)
Q Consensus 149 g~d-~H~DH 156 (243)
|.+ ++-|+
T Consensus 81 G~g~g~~D~ 89 (169)
T 1y5e_A 81 GTGITKRDV 89 (169)
T ss_dssp CCSSSTTCC
T ss_pred CCCCCCCCC
Confidence 432 34554
No 87
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=44.28 E-value=1.3e+02 Score=25.12 Aligned_cols=74 Identities=16% Similarity=0.091 Sum_probs=43.9
Q ss_pred HHHHhCCCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 61 NYLTSRRHN-LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 61 ~~~~~~G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
..+.+.|++ +.++ + |........|.+-.+++++..|++.....+.... .++.+...+.+.+++++. +
T Consensus 171 ~~L~~~G~~~I~~i--~-~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~ 239 (339)
T 3h5o_A 171 RHLLSRGKRRIGFL--G-AQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQ--------PSSMQMGADMLDRALAERPD 239 (339)
T ss_dssp HHHHHTTCCSEEEE--E-ESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECS--------CCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCeEEEE--e-CCCCccHHHHHHHHHHHHHHCCCCCCChheEecC--------CCCHHHHHHHHHHHHcCCCC
Confidence 345667765 3333 2 2222345678888999999999832222222211 134455567777777765 6
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 240 ~~ai~~~ 246 (339)
T 3h5o_A 240 CDALFCC 246 (339)
T ss_dssp CCEEEES
T ss_pred CcEEEEC
Confidence 8999986
No 88
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=44.18 E-value=58 Score=26.80 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=41.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH-----HHh
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE-----VVN 136 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~-----i~~ 136 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++........ ..|+.+...+.+.++ +++
T Consensus 125 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~l~~ 194 (303)
T 3kke_A 125 HLITLGHS-RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD---------AGWEADAGSAALNTLYRGANLGK 194 (303)
T ss_dssp HHHHTTCC-SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHCCCC-eEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe---------cCCChHHHHHHHHHhcchhhhcC
Confidence 45566764 233444322223456788888999999887532111111 013444555666666 654
Q ss_pred -cCCCEEEee
Q 026131 137 -CSIDLIITF 145 (243)
Q Consensus 137 -~~Pd~V~t~ 145 (243)
-+||.||+.
T Consensus 195 ~~~~~ai~~~ 204 (303)
T 3kke_A 195 PDGPTAVVVA 204 (303)
T ss_dssp TTSCSEEEES
T ss_pred CCCCcEEEEC
Confidence 368999986
No 89
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=44.18 E-value=1.1e+02 Score=25.84 Aligned_cols=51 Identities=10% Similarity=-0.040 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
...|.+-.+++++..|++...+ .. . .|+.+.-.+.+.+++.+. +||.||+.
T Consensus 194 ~~~R~~Gf~~al~~~gi~~~~~-~~--~--------~~~~~~~~~~~~~ll~~~~~~~ai~~~ 245 (349)
T 1jye_A 194 ARLRLAGWHKYLTRNQIQPIAE-RE--G--------DWSAMSGFQQTMQMLNEGIVPTAMLVA 245 (349)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEE-EE--C--------CSSHHHHHHHHHHHHHTTCCCSEEEES
T ss_pred HHHHHHHHHHHHHHcCCCcccc-cc--C--------CCChHHHHHHHHHHHhCCCCCCEEEEC
Confidence 4677888888888888742211 10 0 134444455666777654 68999986
No 90
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=43.93 E-value=8.5 Score=34.66 Aligned_cols=29 Identities=10% Similarity=0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
.+.+.+..++++++||+|+.. .|.|.|.+
T Consensus 235 ~~~~~l~p~~~~f~Pd~Ivvs--aG~Da~~~ 263 (376)
T 4a69_A 235 LFQPVINQVVDFYQPTCIVLQ--CGADSLGC 263 (376)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE--CCGGGBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEe--CcccCCCC
Confidence 344556778899999999987 56655543
No 91
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=43.52 E-value=75 Score=27.59 Aligned_cols=81 Identities=14% Similarity=0.154 Sum_probs=53.8
Q ss_pred CCcEEEEEEeCCCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 67 RHNLHILCMSNGNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 67 G~~V~vv~lT~G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
|....+.++.-|+.. .....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=++-+.+=|+.+
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K--~k~c~~vGi---~s~~~~lp~~-------~se~ell~~I~~LN~D~~V~GIlVQ 118 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMK--GNACRRVGM---DSLKIELPQE-------TTTEQLLAEIEKLNANPDVHGILLQ 118 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEecCcc-------CCHHHHHHHHHHhcCCCCccEEEEe
Confidence 777777777767642 33445555 479999999 4556666541 2557888888888776677778888
Q ss_pred CCCCCCCCchHHHHHH
Q 026131 146 DNYGVSGHCNHRDVHH 161 (243)
Q Consensus 146 d~~g~d~H~DH~~~~~ 161 (243)
-| ...|.|-..+-+
T Consensus 119 lP--LP~hid~~~i~~ 132 (303)
T 4b4u_A 119 HP--VPAQIDERACFD 132 (303)
T ss_dssp SS--CCTTSCHHHHHH
T ss_pred CC--CccccChHHHHh
Confidence 54 446777655333
No 92
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=43.44 E-value=1.2e+02 Score=23.99 Aligned_cols=92 Identities=9% Similarity=0.024 Sum_probs=53.2
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (243)
|++ .+.+++..........|.+-.+++++.. |+ .+. .... ..|+.+...+.+.+++++. +||.|++
T Consensus 126 G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~--~~~~------~~~~~~~~~~~~~~~l~~~~~~~ai~~ 193 (276)
T 3ksm_A 126 KER-NIALLRLRAGNASTDQREQGFLDVLRKHDKI---RII--AAPY------AGDDRGAARSEMLRLLKETPTIDGLFT 193 (276)
T ss_dssp SCE-EEEECBCCTTCHHHHHHHHHHHHHHTTCTTE---EEE--ECCB------CCSSHHHHHHHHHHHHHHCSCCCEEEC
T ss_pred CCc-eEEEEEcCCCchhHHHHHHHHHHHHHhCCCc---EEE--EEec------CCCcHHHHHHHHHHHHHhCCCceEEEE
Confidence 653 4555554333335677888889998877 65 222 1111 1245667778888888876 6899887
Q ss_pred eCCCCCCCCchHHHHHHHHHHHHhhcC-CCceEEeee
Q 026131 145 FDNYGVSGHCNHRDVHHGIWSYLNGTS-ERNIEAWEL 180 (243)
Q Consensus 145 ~d~~g~d~H~DH~~~~~av~~a~~~~~-~~~~~~ye~ 180 (243)
. .|..+ ..+.+++++.+ +.++.+.-.
T Consensus 194 ~--------~d~~a--~g~~~al~~~g~p~di~vig~ 220 (276)
T 3ksm_A 194 P--------NESTT--IGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp C--------SHHHH--HHHHHHHHHTTCTTSSEEEEE
T ss_pred C--------Cchhh--hHHHHHHHHcCCCCCeEEEEe
Confidence 5 24333 33455555433 345555443
No 93
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=43.20 E-value=1.2e+02 Score=24.93 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=54.5
Q ss_pred HHH-hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--C
Q 026131 62 YLT-SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC--S 138 (243)
Q Consensus 62 ~~~-~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~--~ 138 (243)
.+. +.|++ .+++++..........|.+-++++++..|..+ ++.+.... . ...|+.+...+.+.+++++. +
T Consensus 116 ~L~~~~G~~-~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~-~~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~~~~ 188 (313)
T 3m9w_A 116 ALVDIVPQG-NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSG-KIKVVGDQ-W----VDGWLPENALKIMENALTANNNK 188 (313)
T ss_dssp HHHHHCSSE-EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-E----CGGGCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCCC-cEEEEECCCCCccHHHHHHHHHHHHHhhccCC-CEEEEeec-c----CCCcCHHHHHHHHHHHHHhCCCC
Confidence 344 56776 66666643333346678888888888774211 23332210 0 01246667778888899875 7
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
|+.||+.+ | ..+..+.+++++.+
T Consensus 189 ~~ai~~~~--------d--~~a~g~~~al~~~G 211 (313)
T 3m9w_A 189 IDAVVASN--------D--ATAGGAIQALSAQG 211 (313)
T ss_dssp CCEEEESS--------H--HHHHHHHHHHHTTT
T ss_pred eeEEEECC--------C--chHHHHHHHHHHcC
Confidence 89999862 2 23444556665543
No 94
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=42.39 E-value=27 Score=27.13 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWS 165 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (243)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 46 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~ea~~~ 86 (164)
T 2is8_A 46 EPPMIKKVLRLWADREGLDLILTN--GGTGLAPRDR--TPEATRE 86 (164)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEc--CCCCCCCCCC--hHHHHHH
Confidence 346788888888775578999997 4432 45555 3444443
No 95
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=42.35 E-value=70 Score=23.76 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=45.6
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeC
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFD 146 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d 146 (243)
+.++++|-|. -.+++.++++.+ |- .+++..++++.. -+.+++.+.+.+.+++.+. .+++..|
T Consensus 2 i~iii~sHG~-------~A~gl~~~~~~i~G~-~~~v~ai~~~~~-------~~~~~~~~~i~~~i~~~~~~~gvliLtD 66 (135)
T 1pdo_A 2 IAIVIGTHGW-------AAEQLLKTAEMLLGE-QENVGWIDFVPG-------ENAETLIEKYNAQLAKLDTTKGVLFLVD 66 (135)
T ss_dssp CEEEEECSBT-------HHHHHHHHHHHHHCC-CSSEEEECBCTT-------CCHHHHHHHHHHHHTTSCCTTCEEEEES
T ss_pred ceEEEEeChH-------HHHHHHHHHHHHcCC-cCCEEEEEeeCC-------CCHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 3567777763 236777777765 74 368888987642 1456788999999988764 5778788
Q ss_pred CCCC
Q 026131 147 NYGV 150 (243)
Q Consensus 147 ~~g~ 150 (243)
-.|+
T Consensus 67 l~GG 70 (135)
T 1pdo_A 67 TWGG 70 (135)
T ss_dssp STTS
T ss_pred CCCC
Confidence 7674
No 96
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=41.85 E-value=1.1e+02 Score=23.05 Aligned_cols=81 Identities=12% Similarity=0.196 Sum_probs=44.3
Q ss_pred EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 026131 43 LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (243)
Q Consensus 43 L~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~ 122 (243)
|++++.|..+ ....++++|.+|.+...++.+.... .+..+.++.+|. ++..+.. |..+ .+
T Consensus 22 l~~s~~p~~a------~a~~La~~Ga~vvi~~r~~~e~~~~-----~~~~~~~~~~G~---~~~~i~~-Dv~~-----~~ 81 (157)
T 3gxh_A 22 LLSSGLPNEQ------QFSLLKQAGVDVVINLMPDSSKDAH-----PDEGKLVTQAGM---DYVYIPV-DWQN-----PK 81 (157)
T ss_dssp EEEEBCCCHH------HHHHHHHTTCCEEEECSCTTSTTSC-----TTHHHHHHHTTC---EEEECCC-CTTS-----CC
T ss_pred eeEcCCCCHH------HHHHHHHcCCCEEEECCCccccccc-----ccHHHHHHHcCC---eEEEecC-CCCC-----CC
Confidence 7888888743 4567788999985433222222111 122334556787 4445443 3211 12
Q ss_pred hHHHHHHHHHHHHhcCCCEEE
Q 026131 123 HKSLAKIVEEEVVNCSIDLII 143 (243)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~ 143 (243)
.+++.+.+..+.+++..|+++
T Consensus 82 ~~~v~~~~~~i~~~~G~dVLV 102 (157)
T 3gxh_A 82 VEDVEAFFAAMDQHKGKDVLV 102 (157)
T ss_dssp HHHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEE
Confidence 356666666666666667654
No 97
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=41.33 E-value=24 Score=31.55 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCc
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (243)
+.+.+..++++++||+|+.. .|.|.|.
T Consensus 235 ~~~~l~p~l~~F~PdlIvvs--aG~Da~~ 261 (375)
T 1c3p_A 235 LEKSLEIVKEVFEPEVYLLQ--LGTDPLL 261 (375)
T ss_dssp HHHHHHHHHHHCCCSEEEEE--CCSTTBT
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccccC
Confidence 44556678899999999987 6776654
No 98
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=40.69 E-value=1.4e+02 Score=24.10 Aligned_cols=73 Identities=5% Similarity=0.013 Sum_probs=44.0
Q ss_pred HHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 62 YLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 62 ~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.+.+. |++ .+.+++ |........|.+-.+++++..|.+ +....... ..|+.+...+.+.+++++. +
T Consensus 119 ~l~~~~~g~~-~i~~i~-~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~ 187 (305)
T 3g1w_A 119 KMAELLDGEG-EVAVIT-LPNQLNHQERTTGFKETLEAEFPA---IEVIAVED------GRGDSLHSRRVAHQLLEDYPN 187 (305)
T ss_dssp HHHHHTTTCE-EEEEEE-CTTCHHHHHHHHHHHHHHHHHCTT---EEEEEEEE------CTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCc-EEEEEe-CCCcccHHHHHHHHHHHHHhhCCC---CEEEEEec------CCCCHHHHHHHHHHHHHhCCC
Confidence 34455 654 445555 333335567888899999888873 22221100 1135566777788888775 5
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.|++.
T Consensus 188 ~~ai~~~ 194 (305)
T 3g1w_A 188 LAGIFAT 194 (305)
T ss_dssp EEEEEES
T ss_pred ceEEEEC
Confidence 7888876
No 99
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=40.57 E-value=1.2e+02 Score=26.19 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=35.3
Q ss_pred CCCCCcEEEEecC--chhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 026131 36 TGDKKNVLLVIAH--PDDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 36 ~~~~~~vL~v~aH--PDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (243)
...+++|-+|+|= .+.+.+ --.+..+.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-=.+
T Consensus 14 L~~Gd~I~ivaPSs~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 81 (311)
T 1zl0_A 14 QPIDGRVALIAPASAIATDVL--EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDI 81 (311)
T ss_dssp CCCCSEEEEECCSBCCCHHHH--HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTE
T ss_pred CCCcCEEEEEeCCCCCCHHHH--HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCC
Confidence 3456677777762 233333 45566666778777543222111 134567888888877754444
No 100
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=40.41 E-value=1.8e+02 Score=25.16 Aligned_cols=76 Identities=14% Similarity=-0.004 Sum_probs=45.4
Q ss_pred HHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-c
Q 026131 61 NYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-C 137 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~ 137 (243)
..+.+.|++= +.+++...... ....|.+-.+++++..|++. ..+.+... ..++.+...+.+.+++++ .
T Consensus 132 ~~L~~~G~r~-I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~--~~~~~~~~------~~~~~~~~~~~~~~~l~~~~ 202 (412)
T 4fe7_A 132 LHLKEKGVNR-FAFYGLPESSGKRWATEREYAFRQLVAEEKYRG--VVYQGLET------APENWQHAQNRLADWLQTLP 202 (412)
T ss_dssp HHHHHTTCCE-EEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC--EEECCSCS------SCSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCce-EEEecccccccccHHHHHHHHHHHHHHHcCCCc--cccccccc------cccchhhHHHHHHHHHHhCC
Confidence 3566788763 34444332222 36789999999999999842 22222111 112344566777777776 4
Q ss_pred CCCEEEee
Q 026131 138 SIDLIITF 145 (243)
Q Consensus 138 ~Pd~V~t~ 145 (243)
+||.|++.
T Consensus 203 ~~~aI~~~ 210 (412)
T 4fe7_A 203 PQTGIIAV 210 (412)
T ss_dssp TTEEEEES
T ss_pred CCeEEEEE
Confidence 68888876
No 101
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=40.41 E-value=59 Score=27.97 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=44.6
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
|+++++.+ + +.+..+..+.++|++|. .++|+.+... ++.......+.|+.+|+| ++..+ +.
T Consensus 2 rivf~gt~---~--fa~~~L~~L~~~~~~i~-~Vvt~~d~~~-g~~~~~~v~~~A~~~gIp---v~~~~--~~------- 62 (305)
T 2bln_A 2 KTVVFAYH---D--MGCLGIEALLAAGYEIS-AIFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV------- 62 (305)
T ss_dssp EEEEEECH---H--HHHHHHHHHHHTTCEEE-EEECCCC-------CCCCHHHHHHHHTCC---EECCS--CC-------
T ss_pred EEEEEEcC---H--HHHHHHHHHHHCCCcEE-EEEcCCCCCC-CCcCccHHHHHHHHcCCC---EECCC--cC-------
Confidence 56666653 1 35677888888888874 4456543210 011111245566778984 33221 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..++ +.+.+++.+||++++..
T Consensus 63 -~~~~----~~~~l~~~~~Dliv~~~ 83 (305)
T 2bln_A 63 -NHPL----WVERIAQLSPDVIFSFY 83 (305)
T ss_dssp -CSHH----HHHHHHHTCCSEEEEES
T ss_pred -CcHH----HHHHHHhcCCCEEEEec
Confidence 1122 35567788999998864
No 102
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.37 E-value=57 Score=27.27 Aligned_cols=73 Identities=16% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 62 YLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.+.+.|++ .+.+++... .......|.+-.+++++..|++... ..+.+ .|+.+...+.+.+++++. +
T Consensus 171 ~L~~~G~~-~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~----------~~~~~~~~~~~~~ll~~~~~ 239 (332)
T 2hsg_A 171 SLIDSGHK-NIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEG----------DYTYDSGIEAVEKLLEEDEK 239 (332)
T ss_dssp HHHTTTCS-CEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEEC----------CSSHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCC-EEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeC----------CCCHHHHHHHHHHHHcCCCC
Confidence 44556764 233333221 1123456778888888888874221 11110 134455566777777764 6
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 240 ~~ai~~~ 246 (332)
T 2hsg_A 240 PTAIFVG 246 (332)
T ss_dssp CSEEEES
T ss_pred CeEEEEC
Confidence 8999885
No 103
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=40.31 E-value=1.1e+02 Score=26.45 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=49.3
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC--CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA--DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~--~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~ 116 (243)
.+||+|.+.. | ++-++|..+.++|++|. .++|..+. ++-.........+.|..+|++ ++ ...+.
T Consensus 4 mmrIvf~Gtp-~----fa~~~L~~L~~~~~~v~-~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIp---v~--~~~~~--- 69 (317)
T 3rfo_A 4 MIKVVFMGTP-D----FSVPVLRRLIEDGYDVI-GVVTQPDRPVGRKKVLTPTPVKVEAEKHGIP---VL--QPLRI--- 69 (317)
T ss_dssp TSEEEEECCS-T----THHHHHHHHHHTTCEEE-EEECCCCCEETTTTEECCCHHHHHHHHTTCC---EE--CCSCT---
T ss_pred ceEEEEEeCC-H----HHHHHHHHHHHCCCcEE-EEEeCCCcccCCCcccCCCHHHHHHHHcCCC---EE--ccccC---
Confidence 3688888875 1 34588888999898774 45565443 111111223456677788994 32 21121
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..++. .+.+++++||++++..
T Consensus 70 -----~~~~~----~~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 70 -----REKDE----YEKVLALEPDLIVTAA 90 (317)
T ss_dssp -----TSHHH----HHHHHHHCCSEEEESS
T ss_pred -----CCHHH----HHHHHhcCCCEEEEcC
Confidence 11222 3456788999998863
No 104
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=39.76 E-value=1e+02 Score=24.81 Aligned_cols=50 Identities=12% Similarity=0.081 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh--cCCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN--CSIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~--~~Pd~V~t~ 145 (243)
...|.+-.+++++..|++ +.... . .|+.+...+.+.+++++ -+||.|++.
T Consensus 133 ~~~R~~gf~~~l~~~g~~---~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~~~ai~~~ 184 (277)
T 3cs3_A 133 SQERLAVSTRELTRFGIP---YEIIQ-G--------DFTEPSGYAAAKKILSQPQTEPVDVFAF 184 (277)
T ss_dssp HHHHHHHHHHHHHHTTCC---EEEEE-C--------CSSHHHHHHHHHHHTTSCCCSSEEEEES
T ss_pred HHHHHHHHHHHHHHcCCC---eeEEe-C--------CCChhHHHHHHHHHHhcCCCCCcEEEEc
Confidence 467788888888888873 22111 1 13444556667777765 368888876
No 105
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.57 E-value=68 Score=26.93 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (243)
++.+.|++ .+.+++..........|.+-.+++++..|++...... + . ..|+.+...+.+.+++++ -+||
T Consensus 171 ~L~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~--~-~------~~~~~~~~~~~~~~ll~~~~~~~ 240 (340)
T 1qpz_A 171 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--V-Q------GDFEPESGYRAMQQILSQPHRPT 240 (340)
T ss_dssp HHHHHTCC-CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGB--C-C------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-EEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhhe--E-e------CCCCHHHHHHHHHHHHcCCCCCc
Confidence 44556764 3344442222223567888889999988874221101 0 0 113455556677777765 4689
Q ss_pred EEEee
Q 026131 141 LIITF 145 (243)
Q Consensus 141 ~V~t~ 145 (243)
.||+.
T Consensus 241 ai~~~ 245 (340)
T 1qpz_A 241 AVFCG 245 (340)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99986
No 106
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=39.56 E-value=1.1e+02 Score=24.67 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=43.6
Q ss_pred HHHhCCC---cEEEEEEeC-CCCC-CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 62 YLTSRRH---NLHILCMSN-GNAD-GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 62 ~~~~~G~---~V~vv~lT~-G~~~-~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
.+.+.|+ +|.++.... |..+ .....|.+-.+++++..|.+.+ .......+ ++.+...+.+.+++++
T Consensus 127 ~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~--------~~~~~~~~~~~~~l~~ 197 (304)
T 3gbv_A 127 MLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN-ILELNLHA--------DLNIEDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE-EEEEEEES--------SCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE-EEEeeecC--------CCHHHHHHHHHHHHHh
Confidence 4455665 344443322 4333 3457888999999999987432 22211111 2223446667777776
Q ss_pred c-CCCEEEee
Q 026131 137 C-SIDLIITF 145 (243)
Q Consensus 137 ~-~Pd~V~t~ 145 (243)
. +|+.||+.
T Consensus 198 ~~~~~ai~~~ 207 (304)
T 3gbv_A 198 HPDVKHGITF 207 (304)
T ss_dssp CTTCCEEEES
T ss_pred CCCeEEEEEc
Confidence 6 68999987
No 107
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.56 E-value=79 Score=25.71 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHhCCCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 61 NYLTSRRHN-LHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 61 ~~~~~~G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.++.+.|++ +.+ ++..........|.+-.+++++..|.+ ....-.. .|+.+...+.+.+++++. +
T Consensus 131 ~~L~~~G~~~I~~--i~~~~~~~~~~~R~~Gf~~~l~~~g~~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~ 197 (293)
T 2iks_A 131 EELRKFPAETVLY--LGALPELSVSFLREQGFRTAWKDDPRE---VHFLYAN--------SYEREAAAQLFEKWLETHPM 197 (293)
T ss_dssp HHHHTSCCSSEEE--EEECTTSHHHHHHHHHHHHHHTTCCCC---EEEEEES--------SSCHHHHHHHHHHHTTTSCC
T ss_pred HHHHHCCCCEEEE--EecCcccccHHHHHHHHHHHHHHcCCC---ccEEEcC--------CCChhhHHHHHHHHHhcCCC
Confidence 345567754 433 332212223567888899999988872 2211111 134445566677777654 6
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.||+.
T Consensus 198 ~~ai~~~ 204 (293)
T 2iks_A 198 PQALFTT 204 (293)
T ss_dssp CSEEEES
T ss_pred CCEEEEC
Confidence 8999986
No 108
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=39.27 E-value=87 Score=27.23 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=35.5
Q ss_pred CCCCCcEEEEecC--ch---hhhcchHHHHHHHHhCCCcEEEEEEeCC---CCCCchHHHHHHHHHHHHHcCC
Q 026131 36 TGDKKNVLLVIAH--PD---DESMFFSPTINYLTSRRHNLHILCMSNG---NADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 36 ~~~~~~vL~v~aH--PD---DE~l~~Ggti~~~~~~G~~V~vv~lT~G---~~~~~~~~R~~E~~~A~~~LGv 100 (243)
...+++|-+|+|= .+ .+.+ --.+..+.+.|.+|.+---+.. -..+-.+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 79 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENR--RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNV 79 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCC
Confidence 4567777777653 12 3332 3445566678887754211111 1134578888888888764433
No 109
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=38.32 E-value=84 Score=27.99 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEee
Q 026131 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITF 145 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~ 145 (243)
+.+.+..+|.+.+++..|-..+...+.......+.+.+.+..++++.+| |+++.|
T Consensus 119 m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~pgD~l~fy 174 (367)
T 4af8_A 119 MLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFH 174 (367)
T ss_dssp HHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4455666898777777765332111111123557888999999998887 555444
No 110
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=37.47 E-value=1.5e+02 Score=23.76 Aligned_cols=91 Identities=9% Similarity=0.037 Sum_probs=50.2
Q ss_pred CCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 026131 67 RHN-LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (243)
Q Consensus 67 G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (243)
|++ +.+++++..........|.+.++++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|+
T Consensus 128 G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~ 196 (290)
T 2fn9_A 128 DAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK---MVAQQS--------AEFDRDTAYKVTEQILQAHPEIKAIW 196 (290)
T ss_dssp SCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE---EEEecc--------CCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 654 33555554322234567888889998887 652 211101 1134455566777777764 689999
Q ss_pred eeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEEe
Q 026131 144 TFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAW 178 (243)
Q Consensus 144 t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~y 178 (243)
+.+ |..+ ..+.+++++.+..++.+.
T Consensus 197 ~~~--------d~~a--~g~~~al~~~g~~dv~vi 221 (290)
T 2fn9_A 197 CGN--------DAMA--LGAMKACEAAGRTDIYIF 221 (290)
T ss_dssp ESS--------HHHH--HHHHHHHHHTTCTTCEEE
T ss_pred ECC--------chHH--HHHHHHHHHCCCCCeEEE
Confidence 861 3333 345566655433344443
No 111
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=36.78 E-value=1e+02 Score=24.74 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCCEEEee
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSIDLIITF 145 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~-~~Pd~V~t~ 145 (243)
....|.+..+++++..|++........ ..|+.+...+.+.+++++ -+||.|++.
T Consensus 153 ~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 207 (296)
T 3brq_A 153 TSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAKFSALVAS 207 (296)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHTC--CCSEEEES
T ss_pred cHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCChhHHHHHHHHHHhCCCCCCEEEEC
Confidence 346677778888888776422110110 013444555667777764 468999886
No 112
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=35.93 E-value=1.7e+02 Score=23.64 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=51.6
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHH-HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINY-LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~-~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..+|.+|+.+|=- .-|.|-.+++ ++++|.+|.+..-+ +...+|..+.++.+|- .++.+... |.
T Consensus 4 l~gK~alVTGaa~---~~GIG~aiA~~la~~Ga~Vvi~~r~--------~~~~~~~~~~~~~~~~--~~~~~~~~-Dv-- 67 (256)
T 4fs3_A 4 LENKTYVIMGIAN---KRSIAFGVAKVLDQLGAKLVFTYRK--------ERSRKELEKLLEQLNQ--PEAHLYQI-DV-- 67 (256)
T ss_dssp CTTCEEEEECCCS---TTCHHHHHHHHHHHTTCEEEEEESS--------GGGHHHHHHHHGGGTC--SSCEEEEC-CT--
T ss_pred CCCCEEEEECCCC---CchHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHHHHHHhcCC--CcEEEEEc-cC--
Confidence 4677888887532 2356655554 66799987554322 2334556666666665 23444321 22
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+++.+.++++.+++ ++|+++--
T Consensus 68 -----~~~~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 68 -----QSDEEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp -----TCHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCEEEec
Confidence 14456777777777776 57887743
No 113
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=35.51 E-value=1.1e+02 Score=26.44 Aligned_cols=63 Identities=11% Similarity=0.120 Sum_probs=40.1
Q ss_pred CCCCCcEEEEecC-----chhhhcchHHHHHHHHhCCCcEEEEE-EeCCC--CCCchHHHHHHHHHHHHHcCC
Q 026131 36 TGDKKNVLLVIAH-----PDDESMFFSPTINYLTSRRHNLHILC-MSNGN--ADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 36 ~~~~~~vL~v~aH-----PDDE~l~~Ggti~~~~~~G~~V~vv~-lT~G~--~~~~~~~R~~E~~~A~~~LGv 100 (243)
...+.+|=+|+|= ++++.+ --.+.++.+.|.+|.+-- +..+. ..+-.+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 79 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQV--EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSV 79 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCcCccCHHHH--HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCC
Confidence 5677889999763 345554 334677778898875431 11111 135678999999988765444
No 114
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=35.26 E-value=36 Score=27.19 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=26.4
Q ss_pred CcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeC
Q 026131 40 KNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSN 77 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~ 77 (243)
+++|+|.+||+-+.-...-.++ .+.+.|.+|.++-+.+
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~ 40 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYA 40 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchh
Confidence 5799999999987422344444 4445688898887754
No 115
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=35.14 E-value=1.8e+02 Score=23.47 Aligned_cols=87 Identities=8% Similarity=0.001 Sum_probs=49.0
Q ss_pred chhhhcchHHHHH-HHHh-CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHH
Q 026131 49 PDDESMFFSPTIN-YLTS-RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSL 126 (243)
Q Consensus 49 PDDE~l~~Ggti~-~~~~-~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l 126 (243)
.|++. +|-.+. .+.+ .|++-.+++++..........|.+-.+++++..|. .+...... . ...|+.+..
T Consensus 107 ~d~~~--~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~---~~~~~~~~-~----~~~~~~~~~ 176 (303)
T 3d02_A 107 IDNEK--FAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYP---DMHEVTRR-M----PVAESVDDS 176 (303)
T ss_dssp SCHHH--HHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCT---TEEESSSC-B----SCTTCHHHH
T ss_pred cCHHH--HHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCC---CCEEEEee-c----CCCCCHHHH
Confidence 46654 233333 3445 68765556665433223346788888888876553 23333211 0 012455566
Q ss_pred HHHHHHHHHhc-CCCEEEee
Q 026131 127 AKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 127 ~~~l~~~i~~~-~Pd~V~t~ 145 (243)
.+.+.+++++. +||.|++.
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~ 196 (303)
T 3d02_A 177 RRTTLDLMKTYPDLKAVVSF 196 (303)
T ss_dssp HHHHHHHHHHCTTEEEEEES
T ss_pred HHHHHHHHHhCCCCCEEEEe
Confidence 77788888765 57888886
No 116
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=35.05 E-value=1.8e+02 Score=23.71 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=38.9
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
|++ .+.+++..........|.+-++++++..|++ +...-. ..|+.+...+.+.+++++. +||.|++.
T Consensus 122 G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 189 (313)
T 2h3h_A 122 GKG-KVVIGTGSLTAMNSLQRIQGFKDAIKDSEIE---IVDILN--------DEEDGARAVSLAEAALNAHPDLDAFFGV 189 (313)
T ss_dssp SCS-EEEEEESCSSCHHHHHHHHHHHHHHTTSSCE---EEEEEE--------CSSCHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CCC-EEEEEECCCCCccHHHHHHHHHHHhcCCCCE---EEEeec--------CCCCHHHHHHHHHHHHHHCcCceEEEEc
Confidence 654 3344443222234567888888888887772 211111 1145556667778888765 57999986
No 117
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=34.62 E-value=60 Score=26.52 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
...|.+-.+++++..|++........ ..|+.+...+.+.+++++. +||.||+.
T Consensus 149 ~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~ 202 (289)
T 2fep_A 149 RSKKLQGYKRALEEANLPFNEQFVAE---------GDYTYDSGLEALQHLMSLDKKPTAILSA 202 (289)
T ss_dssp HTTHHHHHHHHHHHTTCCCCGGGEEE---------CCSCHHHHHHHHHHHTTSSSCCSEEEES
T ss_pred HHHHHHHHHHHHHHcCCCCChheEee---------CCCCHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 45677778888888887422110110 0134445566677777653 68999886
No 118
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=34.56 E-value=1.2e+02 Score=26.29 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=55.3
Q ss_pred HHHHHhCC--CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 60 INYLTSRR--HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 60 i~~~~~~G--~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
+.++.++| ....+.++--|+. +.....|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=++
T Consensus 24 v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 24 VTQLKEQVPGFTPRLAILQVGNRDDSNLYINVK--LKAAEEIGI---KATHIKLPRT-------TTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 34455554 5456666666654 334455555 478999999 4555666541 2557888888888777
Q ss_pred cCCCEEEeeCCCCCCCC--chHHHHH
Q 026131 137 CSIDLIITFDNYGVSGH--CNHRDVH 160 (243)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H--~DH~~~~ 160 (243)
-+.+=|+.+-|. ..| .|-..+-
T Consensus 92 ~~V~GIlvqlPL--P~~~~id~~~i~ 115 (301)
T 1a4i_A 92 STVHGFLVQLPL--DSENSINTEEVI 115 (301)
T ss_dssp TTCCEEEECSSC--CCSSCCCHHHHH
T ss_pred CCCcEEEEeccC--CCCCccCHHHHH
Confidence 777878888554 356 6665543
No 119
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=34.40 E-value=1.9e+02 Score=23.54 Aligned_cols=89 Identities=12% Similarity=-0.032 Sum_probs=46.5
Q ss_pred hcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 026131 53 SMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (243)
Q Consensus 53 ~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~ 132 (243)
.+++-|-...+.+.|....+++ |+.+.... |..+-.+..|+ .+ ..+|.-||.. +...+|..
T Consensus 28 ~i~~DgGa~~l~~~g~~Pd~iv---GDfDSi~~----~~~~~~~~~~~---~i--~~~p~eKD~T-------D~e~Al~~ 88 (222)
T 3lm8_A 28 WIGVDKGTVTLLDAGIIPVEAF---GDFDSITE----QERRRIEKAAP---AL--HVYQAEKDQT-------DLDLALDW 88 (222)
T ss_dssp EEEETHHHHHHHHHTCCCSEEE---SCSTTSCH----HHHHHHHHHCT---TC--EEECCCSSSC-------HHHHHHHH
T ss_pred EEEECHHHHHHHHcCCCCcEEE---eCcccCCH----HHHHHHHhcCC---eE--EEeCCCCCCC-------HHHHHHHH
Confidence 4556666666666676655544 55554422 22233334565 22 2233223321 22333333
Q ss_pred HHHhcCCCEEEeeCCCCCCCCchHHHHHHHH
Q 026131 133 EVVNCSIDLIITFDNYGVSGHCNHRDVHHGI 163 (243)
Q Consensus 133 ~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av 163 (243)
.++ .+++.|+.. .+..+=.||....-..
T Consensus 89 a~~-~g~~~I~i~--Ga~GgR~DH~lani~l 116 (222)
T 3lm8_A 89 ALE-KQPDIIQIF--GITGGRADHFLGNIQL 116 (222)
T ss_dssp HHH-HCCSEEEEE--SCCCSCHHHHHHHHHH
T ss_pred HHH-cCCCEEEEE--cCCCCchhHHHHHHHH
Confidence 333 377777887 4555799998865544
No 120
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=33.72 E-value=2e+02 Score=23.72 Aligned_cols=86 Identities=7% Similarity=0.052 Sum_probs=47.9
Q ss_pred CCCcEEEEecCchhhhcchHHHHHH-HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 026131 38 DKKNVLLVIAHPDDESMFFSPTINY-LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (243)
Q Consensus 38 ~~~~vL~v~aHPDDE~l~~Ggti~~-~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~ 116 (243)
.++++|+.++- =|.|-.+++ ++++|.+|.++.... ...+.++..+..+..|. ++.++.. |.
T Consensus 48 ~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~-Dv--- 109 (294)
T 3r3s_A 48 KDRKALVTGGD-----SGIGRAAAIAYAREGADVAINYLPA------EEEDAQQVKALIEECGR---KAVLLPG-DL--- 109 (294)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEECCGG------GHHHHHHHHHHHHHTTC---CEEECCC-CT---
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCc------chhHHHHHHHHHHHcCC---cEEEEEe-cC---
Confidence 46778888874 355655554 567899875543221 12233444444455565 4554432 22
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 110 ----~d~~~v~~~~~~~~~~~g~iD~lv~n 135 (294)
T 3r3s_A 110 ----SDESFARSLVHKAREALGGLDILALV 135 (294)
T ss_dssp ----TSHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred ----CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 14455666666666665 68987754
No 121
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=33.68 E-value=87 Score=27.40 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=53.8
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCCC-----------chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-cc
Q 026131 58 PTINYLTSRR-----HNLHILCMSNGNADG-----------MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KL 120 (243)
Q Consensus 58 gti~~~~~~G-----~~V~vv~lT~G~~~~-----------~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~-~~ 120 (243)
+.+..+.++- .=++-++++.|+... .+-.+-.|..+-+.-+|+ ..+..++.|+.+|..+ +.
T Consensus 14 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A 91 (323)
T 1l6s_A 14 PALRAMFEETTLSLNDLVLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGI--RSVMTFGISHHTDETGSDA 91 (323)
T ss_dssp HHHHHHHCCCCCCGGGEEEEEEEETTCSSCEECTTSTTCEEEEGGGHHHHHHHHHHHTC--CEEEEEEECSSCBSSCGGG
T ss_pred hHHHHHhhcCcCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEeCCCCCCCcccccc
Confidence 3455555432 126677888887531 222333344445566899 5677778887655322 34
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
|+.+-++..-.+.|++.-||+++..|
T Consensus 92 ~~~~g~v~rair~iK~~~pdl~vitD 117 (323)
T 1l6s_A 92 WREDGLVARMSRICKQTVPEMIVMSD 117 (323)
T ss_dssp GSTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCCCcHHHHHHHHHHHCCCeEEEEe
Confidence 67777788877888888899876554
No 122
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=33.37 E-value=1.6e+02 Score=24.70 Aligned_cols=71 Identities=18% Similarity=0.132 Sum_probs=40.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (243)
.+.+.|++ .+.+++..........|.+-.+++++..|++ ..+.+. .+ |+.+...+.+.+++++..| .
T Consensus 178 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~~v~~--~~--------~~~~~~~~~~~~ll~~~~~-a 244 (348)
T 3bil_A 178 LLAHNNAL-PIGYLSGPMDTSTGRERLEDFKAACANSKIG-EQLVFL--GG--------YEQSVGFEGATKLLDQGAK-T 244 (348)
T ss_dssp HHHHTTCC-SEEEECCCTTSHHHHHHHHHHHHHHHHTTCC-CCEEEC--CC--------SSHHHHHHHHHHHHHTTCS-E
T ss_pred HHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHcCcC-ccEEEc--CC--------CCHHHHHHHHHHHHcCCCC-E
Confidence 45566764 2333432212223567888889999988873 222221 11 3444556667777776558 8
Q ss_pred EEee
Q 026131 142 IITF 145 (243)
Q Consensus 142 V~t~ 145 (243)
||+.
T Consensus 245 i~~~ 248 (348)
T 3bil_A 245 LFAG 248 (348)
T ss_dssp EEES
T ss_pred EEEc
Confidence 8775
No 123
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=33.16 E-value=25 Score=31.35 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCc------------hHHHHHHHHHHHHh
Q 026131 128 KIVEEEVVNCSIDLIITFDNYGVSGHC------------NHRDVHHGIWSYLN 168 (243)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~d~~g~d~H~------------DH~~~~~av~~a~~ 168 (243)
+.+...+++++||+|+.. .|.|.|. ++....+.+.+..+
T Consensus 247 ~~v~p~l~~f~PdlIvvs--aG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~ 297 (369)
T 1zz1_A 247 QVVLPALRAYRPQLIIVG--SGFDASMLDPLARMMVTADGFRQMARRTIDCAA 297 (369)
T ss_dssp HTHHHHHHHHCCSEEEEE--ECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEe--CCccCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 347778899999999986 5666554 45556666655543
No 124
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=32.28 E-value=96 Score=27.24 Aligned_cols=90 Identities=18% Similarity=0.197 Sum_probs=54.9
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHH-HHHcCCCCCcEEEccCCCCCCCcc
Q 026131 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRA-CAVLKIPLEQVKVLDLVDFQDGFD 118 (243)
Q Consensus 40 ~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A-~~~LGv~~~~~~~l~~pd~~d~~~ 118 (243)
+-..++++-|+=.- +.+.+..+.+. .+ ..++.| | +-+..++.+. .+-+|++.-+ +.|+-. .+ +..
T Consensus 11 ~~~~v~GtRpe~~k--~~p~~~~l~~~-~~-~~~~~t-g------qh~~~~~~~~~~~~~~i~~~~-~~l~~~-~~-~~~ 76 (385)
T 4hwg_A 11 KVMTIVGTRPELIK--LCCVISEFDKH-TK-HILVHT-G------QNYAYELNQVFFDDMGIRKPD-YFLEVA-AD-NTA 76 (385)
T ss_dssp EEEEEECSHHHHHH--HHHHHHHHHHH-SE-EEEEEC-S------CHHHHHHTHHHHC-CCCCCCS-EECCCC-CC-CSH
T ss_pred heeEEEEcCHhHHH--HHHHHHHHHhc-CC-EEEEEe-C------CCCChhHHHHHHhhCCCCCCc-eecCCC-CC-CHH
Confidence 34567777776444 68889888765 43 344555 4 2355555554 4678884222 456642 11 111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+ ....+...+.+++++++||+|+++
T Consensus 77 ~--~~~~~~~~l~~~l~~~kPD~Vlv~ 101 (385)
T 4hwg_A 77 K--SIGLVIEKVDEVLEKEKPDAVLFY 101 (385)
T ss_dssp H--HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred H--HHHHHHHHHHHHHHhcCCcEEEEE
Confidence 1 223567788999999999999998
No 125
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.05 E-value=72 Score=25.89 Aligned_cols=73 Identities=14% Similarity=0.077 Sum_probs=38.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHHH-hcCC
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEVV-NCSI 139 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~-~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~-~~~P 139 (243)
.+.+.|++ .+++++..........|.+-++++++..|++.... ...+ + |+.+...+.+.++++ .-+|
T Consensus 119 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~--~--------~~~~~~~~~~~~~l~~~~~~ 187 (291)
T 3egc_A 119 YLIARGHT-RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAG--G--------VRADNGRDGAIKVLTGADRP 187 (291)
T ss_dssp HHHHTTCC-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------------CCHHHHHHHHTC-CCC
T ss_pred HHHHcCCC-EEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeC--C--------CChhHHHHHHHHHHhCCCCC
Confidence 45567764 23344433223346778888999999988753221 1111 1 122223445566664 3468
Q ss_pred CEEEee
Q 026131 140 DLIITF 145 (243)
Q Consensus 140 d~V~t~ 145 (243)
|.|++.
T Consensus 188 ~ai~~~ 193 (291)
T 3egc_A 188 TALLTS 193 (291)
T ss_dssp SEEEES
T ss_pred cEEEEC
Confidence 999886
No 126
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=31.94 E-value=1.2e+02 Score=23.89 Aligned_cols=95 Identities=14% Similarity=0.119 Sum_probs=51.8
Q ss_pred HHHHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 60 INYLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
...+.+.|++ .+.+++... .......|.+-.+++++..|++. ... ..+ |+.+...+.+.++++ -+
T Consensus 107 ~~~L~~~G~~-~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~---~~~-~~~--------~~~~~~~~~~~~~l~-~~ 172 (255)
T 1byk_A 107 MQRLYDQGHR-NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP---VAA-LPG--------LAMKQGYENVAKVIT-PE 172 (255)
T ss_dssp HHHHHHTTCC-CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC---EEE-CCC--------SCHHHHHHHSGGGCC-TT
T ss_pred HHHHHHcCCC-eEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc---cee-ecC--------CccchHHHHHHHHhc-CC
Confidence 3455677875 344454321 22345788888999999999842 121 111 233444444555554 46
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEEe
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAW 178 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~y 178 (243)
||.|++. .|.. +..+.+++++.+..++.+.
T Consensus 173 ~~ai~~~--------~d~~--A~g~~~al~~~g~~di~vi 202 (255)
T 1byk_A 173 TTALLCA--------TDTL--ALGASKYLQEQRIDTLQLA 202 (255)
T ss_dssp CCEEEES--------SHHH--HHHHHHHHHHTTCCSCEEE
T ss_pred CCEEEEe--------ChHH--HHHHHHHHHHcCCCcEEEE
Confidence 8999886 2333 3445556655433444443
No 127
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=31.54 E-value=1.5e+02 Score=22.71 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+.+.++.+|+ ++.... .|| +.+.+.+.+.+.....+.|+|+|.
T Consensus 45 L~~~L~~~G~---~v~~~~iV~D---------d~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEec
Confidence 4556677888 343333 223 345677777777777789999997
No 128
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=31.11 E-value=1.3e+02 Score=26.05 Aligned_cols=87 Identities=16% Similarity=0.083 Sum_probs=54.1
Q ss_pred HHHHHhC-C-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 60 INYLTSR-R-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 60 i~~~~~~-G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
+.++.++ | ....+.++--|+. ......|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=+.
T Consensus 26 v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 26 VAALRELYGGRVPGLASIIVGQRMDSKKYVQLK--HKAAAEVGM---ASFNVELPED-------ISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 3344443 6 6666666666653 234455554 489999999 5666666641 2556888888877666
Q ss_pred cCCCEEEeeCCCCCCCCchHHHHH
Q 026131 137 CSIDLIITFDNYGVSGHCNHRDVH 160 (243)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H~DH~~~~ 160 (243)
-+.+=|+.+-|.. .|.|-..+-
T Consensus 94 ~~v~GIlVqlPLP--~~id~~~v~ 115 (300)
T 4a26_A 94 PNCHGIIVQLPLP--KHLNENRAI 115 (300)
T ss_dssp TTCCEEEECSCCC--TTSCHHHHH
T ss_pred CCCCEEEEcCCCC--CCCCHHHHH
Confidence 6677788774433 566655533
No 129
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=30.72 E-value=1.3e+02 Score=22.85 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=42.3
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEeeCC
Q 026131 71 HILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDN 147 (243)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~ 147 (243)
.++++|-|.. .+++.++++. +|- .+++..++++.. -+.+++.+.+.+.+++... .+++..|-
T Consensus 3 giii~sHg~~-------A~gl~~~~~~i~G~-~~~i~av~~~~~-------~~~~~~~~~i~~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 3 GIVIATHGAL-------SDGAKDAATVIMGA-TENIETVNLNSG-------DDVQALGGQIKTAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp EEEEEEETTH-------HHHHHHHHHHHHSC-CCSEEEEEECTT-------CCHHHHHHHHHHHHHHHCSSSCEEEEESS
T ss_pred EEEEEECcHH-------HHHHHHHHHHHcCC-CCCEEEEEecCC-------CCHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 4667777631 3455666664 564 468888887632 1456788888888888753 47777787
Q ss_pred CCC
Q 026131 148 YGV 150 (243)
Q Consensus 148 ~g~ 150 (243)
.|+
T Consensus 68 ~GG 70 (150)
T 3ipr_A 68 LSA 70 (150)
T ss_dssp TTS
T ss_pred CCC
Confidence 675
No 130
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=30.30 E-value=2e+02 Score=22.82 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEeeCCCCCCCCchHHHHHH
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHH 161 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~~~~ 161 (243)
....|.+-.+++++..|++ +..... ..|+.+.-.+.+.+++++. +|+.||+.+ |. .+.
T Consensus 137 ~~~~R~~Gf~~al~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D~--~A~ 195 (271)
T 2dri_A 137 AARERGEGFQQAVAAHKFN---VLASQP--------ADFDRIKGLNVMQNLLTAHPDVQAVFAQN--------DE--MAL 195 (271)
T ss_dssp HHHHHHHHHHHHHHHHTCE---EEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEEESS--------HH--HHH
T ss_pred cHhHHHHHHHHHHhcCCCE---EEEecC--------CCCCHHHHHHHHHHHHHhCCCccEEEECC--------Cc--HHH
Confidence 3467888889998888872 211111 1134455566677777764 589999862 33 344
Q ss_pred HHHHHHhhcCCCceEE
Q 026131 162 GIWSYLNGTSERNIEA 177 (243)
Q Consensus 162 av~~a~~~~~~~~~~~ 177 (243)
.+.+++++.+..++.+
T Consensus 196 g~~~al~~~g~~dv~v 211 (271)
T 2dri_A 196 GALRALQTAGKSDVMV 211 (271)
T ss_dssp HHHHHHHHHTCCSCEE
T ss_pred HHHHHHHHcCCCCcEE
Confidence 5566665544334433
No 131
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=30.15 E-value=2.2e+02 Score=23.14 Aligned_cols=86 Identities=9% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..++++|+.++= =|.|-.++ +++++|.+|.++...+ ..+.++..+..+..|. ++.++.. |.
T Consensus 29 l~gk~~lVTGas-----~GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~l~~~~~---~~~~~~~-Dv-- 90 (271)
T 3v2g_A 29 LAGKTAFVTGGS-----RGIGAAIAKRLALEGAAVALTYVNA-------AERAQAVVSEIEQAGG---RAVAIRA-DN-- 90 (271)
T ss_dssp CTTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CT--
T ss_pred CCCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEC-CC--
Confidence 456788888874 25555554 4567899875543222 3344444444455565 4444332 22
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 91 -----~d~~~v~~~~~~~~~~~g~iD~lvnn 116 (271)
T 3v2g_A 91 -----RDAEAIEQAIRETVEALGGLDILVNS 116 (271)
T ss_dssp -----TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -----CCHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 14456666777777766 68988754
No 132
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=30.03 E-value=1.6e+02 Score=24.96 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCCEEEeeC
Q 026131 125 SLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.....+.+++++.+||+|+++.
T Consensus 86 ~~~~~l~~~l~~~~~Dvv~~~~ 107 (394)
T 2jjm_A 86 ALASKMAEVAQRENLDILHVHY 107 (394)
T ss_dssp HHHHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEcc
Confidence 4456788889999999999973
No 133
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=30.01 E-value=79 Score=28.09 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=35.8
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 026131 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 36 ~~~~~~vL~v~aHP-----DDE~l~~Ggti~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (243)
...+++|-+|+|=- +.+.+ --.+..+.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-=.+
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i 110 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRF--FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDI 110 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTE
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCC
Confidence 45677888887641 22332 34455666788877543212111 134578888888887764333
No 134
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=29.94 E-value=1e+02 Score=29.05 Aligned_cols=82 Identities=21% Similarity=0.216 Sum_probs=43.6
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 026131 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (243)
Q Consensus 41 ~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~ 120 (243)
|+++++.+ -+.+..|..+.++|++|.. ++|+.+... ++.......+.|+..|+| ++..+ +.
T Consensus 2 ri~~~~s~-----~~~~~~l~~l~~~~~~i~~-v~t~~~~~~-~~~~~~~~~~~a~~~~ip---~~~~~--~~------- 62 (660)
T 1z7e_A 2 KTVVFAYH-----DMGCLGIEALLAAGYEISA-IFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV------- 62 (660)
T ss_dssp EEEEEECH-----HHHHHHHHHHHHTTCEEEE-EECCCC---------CCHHHHHHHHTCC---EECCS--CT-------
T ss_pred EEEEEEeC-----HHHHHHHHHHHhCCCCEEE-EEeCCCCCc-cCcCccHHHHHHHHcCCC---EeccC--CC-------
Confidence 45555543 1346678888888888754 456543211 122222345667788994 32221 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..++ +.+.+++++||+|++..
T Consensus 63 -~~~~----~~~~l~~~~~d~iv~~~ 83 (660)
T 1z7e_A 63 -NHPL----WVERIAQLSPDVIFSFY 83 (660)
T ss_dssp -TSHH----HHHHHHHHCCSEEEEES
T ss_pred -CcHH----HHHHHHhcCCCEEEEcC
Confidence 1122 35566778999998863
No 135
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=29.64 E-value=1.3e+02 Score=26.62 Aligned_cols=49 Identities=8% Similarity=0.045 Sum_probs=33.5
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCC-----chHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 026131 60 INYLTSRRHNLHILCMSNGNADG-----MGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~-----~~~~R~~E~~~A~~~LGv~~~~~~~l~~p 111 (243)
+..+.++|.+|..+++..+..+. ......+.+++.|+.||+ .++.+++.
T Consensus 26 a~lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGI---p~~vv~~~ 79 (376)
T 2hma_A 26 ALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGI---PYYSVNFE 79 (376)
T ss_dssp HHHHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTC---CEEEEECH
T ss_pred HHHHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCC---cEEEEeCh
Confidence 33445689999999998875431 123345667888999999 46666654
No 136
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=29.52 E-value=26 Score=31.74 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCc
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (243)
+.+.+..++++++||+|+.. .|.|.|.
T Consensus 267 ~~~~v~p~~~~f~Pdlivvs--aG~Da~~ 293 (413)
T 2vqm_A 267 FRTVVMPIASEFAPDVVLVS--SGFDAVE 293 (413)
T ss_dssp HHHTHHHHHHHHCCSEEEEE--ECCTTBS
T ss_pred HHHHHHHHHHhcCCCEEEEe--CChhhcC
Confidence 34556677899999999987 7877764
No 137
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=29.44 E-value=1e+02 Score=26.52 Aligned_cols=86 Identities=12% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHhCC-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSRR-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++| ....+.++--|+. ......|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=++-
T Consensus 23 v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~D~ 90 (288)
T 1b0a_A 23 VQARIAAGLRAPGLAVVLVGSNPASQIYVASK--RKACEEVGF---VSRSYDLPET-------TSEAELLELIDTLNADN 90 (288)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EECCEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCCC
Confidence 45566666 5466666666654 334455554 478999999 3444444431 25568888888876666
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRDV 159 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (243)
+.+=|+.+-|. ..|.|-..+
T Consensus 91 ~V~GIlvqlPL--P~~id~~~i 110 (288)
T 1b0a_A 91 TIDGILVQLPL--PAGIDNVKV 110 (288)
T ss_dssp TCCEEEECSSC--CTTSCHHHH
T ss_pred CCcEEEEeCCC--CCCCCHHHH
Confidence 66778888443 357666553
No 138
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=29.31 E-value=79 Score=25.20 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=36.8
Q ss_pred CcEEEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEE
Q 026131 68 HNLHILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLII 143 (243)
Q Consensus 68 ~~V~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~ 143 (243)
.+..+.++|.|+. +. ...-..-+.+.++.+|. ++.... .|| +.+.+.+.|.+.+. .+.|+|+
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~-~~~DlVI 94 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGF---VVDGVVAVEA---------DEVDIRNALNTAVI-GGVDLVV 94 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTE---EEEEEEEECS---------CHHHHHHHHHHHHH-TTCSEEE
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHh-CCCCEEE
Confidence 4456667777752 22 22223344556677887 333322 233 34567777777663 4689999
Q ss_pred ee
Q 026131 144 TF 145 (243)
Q Consensus 144 t~ 145 (243)
|.
T Consensus 95 tt 96 (185)
T 3rfq_A 95 SV 96 (185)
T ss_dssp EE
T ss_pred EC
Confidence 97
No 139
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=28.72 E-value=35 Score=30.53 Aligned_cols=29 Identities=7% Similarity=0.091 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 125 SLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
.+.+.+..++++++||+|+.. .|.|.|.+
T Consensus 234 ~~~~~~~~~~~~f~Pd~ivvs--aG~D~~~~ 262 (367)
T 3max_A 234 IFKPIISKVMEMYQPSAVVLQ--CGADSLSG 262 (367)
T ss_dssp HHHHHHHHHHHHHCCSEEEEE--CCGGGBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEE--CCccCcCC
Confidence 344556678899999999987 66655544
No 140
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=28.63 E-value=1.2e+02 Score=27.19 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCCCC-CCchHHHHHHHHHH
Q 026131 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWS 165 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~~~~av~~ 165 (243)
+.+.++.+|+ ++...+ .+| +.+.+.+.|.+.+. +.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 209 L~~~l~~~G~---~v~~~~iv~D---------d~~~i~~al~~a~~--~~Dlvitt--GG~s~g~~D~--t~~al~~ 267 (411)
T 1g8l_A 209 VHLMLEQLGC---EVINLGIIRD---------DPHALRAAFIEADS--QADVVISS--GGVSVGEADY--TKTILEE 267 (411)
T ss_dssp HHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHH--HCSEEEEC--SSSCSSSCSH--HHHHHHH
T ss_pred HHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHhh--cCCEEEEC--CCCCCCCccc--HHHHHHh
Confidence 5666777898 333333 223 34577788888776 57999996 3332 45555 4444444
No 141
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=28.34 E-value=59 Score=27.08 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=35.8
Q ss_pred HHHHHhCCCcEEEEEEeCCCC-CCc--hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 60 INYLTSRRHNLHILCMSNGNA-DGM--GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~-~~~--~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
+..+.++|.+|..+..+.+.. +.. -....+-+++.|+.||+| ++..+++... .++ .+.+.+.+++
T Consensus 21 l~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIp---l~~v~~~g~~--------~~e-~e~l~~~l~~ 88 (237)
T 3rjz_A 21 LYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIP---LVKGFTQGEK--------EKE-VEDLKRVLSG 88 (237)
T ss_dssp HHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCC---EEEEEC--------------C-HHHHHHHHTT
T ss_pred HHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCC---EEEEECCCCc--------hHH-HHHHHHHHHh
Confidence 445667899987776555432 110 001112245578999994 5666655310 011 2344445555
Q ss_pred cCCCEEEe
Q 026131 137 CSIDLIIT 144 (243)
Q Consensus 137 ~~Pd~V~t 144 (243)
...+.|++
T Consensus 89 ~~i~~vv~ 96 (237)
T 3rjz_A 89 LKIQGIVA 96 (237)
T ss_dssp SCCSEEEC
T ss_pred cCCcEEEE
Confidence 55666554
No 142
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=27.94 E-value=2e+02 Score=25.28 Aligned_cols=88 Identities=10% Similarity=-0.007 Sum_probs=55.3
Q ss_pred HHHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccC-CCC-CCCc-
Q 026131 57 SPTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDL-VDF-QDGF- 117 (243)
Q Consensus 57 Ggti~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~-pd~-~d~~- 117 (243)
...+..+.++- .=++-++++.|+.. +.+-.+-.|..+-+.-+|+ ..+..++. |+. +|..
T Consensus 21 ~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~KD~~g 98 (337)
T 1w5q_A 21 DDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGI--PALALFPVTPVEKKSLDA 98 (337)
T ss_dssp SHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHHHHHHHHHHHHHTTC--CEEEEEECCCGGGCBSSC
T ss_pred ChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecCCCcccCCccc
Confidence 34566666542 22677888898752 1233444445555667999 56777887 433 3322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 99 s~A~~~~g~v~rair~iK~~~pdl~vitD 127 (337)
T 1w5q_A 99 AEAYNPEGIAQRATRALRERFPELGIITD 127 (337)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred CccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23467777888888888888899876544
No 143
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=27.70 E-value=1.9e+02 Score=23.43 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=25.1
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.|+..|+| +...+..++ .. +.+.+.+++++||+|++..
T Consensus 52 ~~A~~~gIp---~~~~~~~~~--------~~----~~~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 52 LIAQSYGIP---TFVVKRKPL--------DI----EHISTVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHTTCC---EEECCBTTB--------CH----HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHcCCC---EEEeCcccC--------Ch----HHHHHHHHHhCCCEEEEeC
Confidence 456778994 444443221 11 4567778889999999863
No 144
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.14 E-value=1.1e+02 Score=26.66 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=38.5
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 026131 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (243)
Q Consensus 36 ~~~~~~vL~v~aHP-----DDE~l~~Ggti~~~~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (243)
...+++|-+|+|=- +.+.+ --.+..+.+.|.+|.+--.+... ..+-.+.|.+|+.+|.+-=.+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 80 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRF--ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNV 80 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCC
Confidence 45678888888742 22332 34456677789987652111111 134678999999998874444
No 145
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=26.96 E-value=2.9e+02 Score=24.50 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCC
Q 026131 61 NYLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIP 101 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~ 101 (243)
..|.+.|++-.+.+-..-. .......|.+-.++||+-.|++
T Consensus 149 ~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~ 190 (371)
T 3qi7_A 149 ERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLP 190 (371)
T ss_dssp HHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCC
Confidence 4566789864333222111 1223566999999999999994
No 146
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=26.85 E-value=96 Score=24.97 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=40.9
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC---
Q 026131 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS--- 138 (243)
Q Consensus 62 ~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~--- 138 (243)
.+.+.|++- +.+++.. .......|.+..+++++..|++.....+..+.. . ...+...+.+.+++++..
T Consensus 131 ~L~~~G~~~-i~~i~~~-~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~ 201 (298)
T 3tb6_A 131 HLLSLGHTH-MMGIFKA-DDTQGVKRMNGFIQAHRERELFPSPDMIVTFTT-----E--EKESKLLEKVKATLEKNSKHM 201 (298)
T ss_dssp HHHHTTCCS-EEEEEES-SSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECH-----H--HHTTHHHHHHHHHHHHTTTSC
T ss_pred HHHHCCCCc-EEEEcCC-CCccHHHHHHHHHHHHHHcCCCCCcceEEEecc-----c--chhhhHHHHHHHHHhcCCCCC
Confidence 455677642 2233321 223456788889999999887532221222111 0 011223566777777653
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.|++.
T Consensus 202 ~~ai~~~ 208 (298)
T 3tb6_A 202 PTAILCY 208 (298)
T ss_dssp CSEEECS
T ss_pred CeEEEEe
Confidence 8999876
No 147
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=26.61 E-value=34 Score=31.23 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
+.+.+..++++++||+|+.. .|.|.|.+
T Consensus 296 ~~~~l~p~~~~F~PdlIvvs--aG~Da~~g 323 (421)
T 2pqp_A 296 FRIVVMPIAREFSPDLVLVS--AGFDAAEG 323 (421)
T ss_dssp HHHTHHHHHHHHCCSEEEEE--ECCTTBTT
T ss_pred HHHHHHHHHHHhCCCEEEEe--CCcccccc
Confidence 33446677899999999987 78888764
No 148
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=26.55 E-value=94 Score=23.95 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCCCC
Q 026131 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYG 149 (243)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g 149 (243)
....-.+|....++.+|+ +++....|.-+.++....--..++.+.+++.++..+.++.-+| .|
T Consensus 56 vv~~av~eI~~~a~kv~~--~~ivlYPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~raP--FG 118 (143)
T 2hl0_A 56 VSLKAIEEISKVAEQVKA--ENVFVYPFAHLSSELAKPSVAMDILNRVYQGLKERGFNVGKAP--FG 118 (143)
T ss_dssp HHHHHHHHHHHHHHHHTC--CEEEEEECGGGCSSBCCHHHHHHHHHHHHHHHHHTTCEEEECC--SS
T ss_pred HHHHHHHHHHHHHHhcCC--CEEEEeccccccCccCChHHHHHHHHHHHHHHHhCCCeEEEeC--Cc
Confidence 344456888999999999 6888777754433221100113666777777777667777666 66
No 149
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=26.48 E-value=2.7e+02 Score=22.90 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=46.7
Q ss_pred chhhhcchHHHHH-HHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChH
Q 026131 49 PDDESMFFSPTIN-YLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHK 124 (243)
Q Consensus 49 PDDE~l~~Ggti~-~~~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~ 124 (243)
+|++. +|-.+. .+.+ .|++ .+.+++..........|.+-++++++.. |++ +...-. ..|+.+
T Consensus 116 ~D~~~--~g~~a~~~L~~~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~---~~~~~~--------~~~~~~ 181 (332)
T 2rjo_A 116 YDGVA--YGEETATQLFKSMGGKG-GVVALGGIFSNVPAIERKAGLDAALKKFPGIQ---LLDFQV--------ADWNSQ 181 (332)
T ss_dssp CCHHH--HHHHHHHHHHHHTTTCE-EEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEE--------CTTCHH
T ss_pred cChHH--HHHHHHHHHHHHcCCCC-eEEEEECCCCCccHHHHHHHHHHHHHhCCCcE---EEeecc--------CCCCHH
Confidence 45554 233333 3445 5764 3455553322234577888899999988 762 211101 113445
Q ss_pred HHHHHHHHHHHh-c-CCCEEEee
Q 026131 125 SLAKIVEEEVVN-C-SIDLIITF 145 (243)
Q Consensus 125 ~l~~~l~~~i~~-~-~Pd~V~t~ 145 (243)
...+.+.+++++ . +||.||+.
T Consensus 182 ~~~~~~~~ll~~~~~~~~aI~~~ 204 (332)
T 2rjo_A 182 KAFPIMQAWMTRFNSKIKGVWAA 204 (332)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEES
T ss_pred HHHHHHHHHHHhcCCCeeEEEEC
Confidence 556677777775 3 68889885
No 150
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=26.46 E-value=53 Score=26.82 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=26.9
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHH-----hCCCcEEEEEEeC
Q 026131 39 KKNVLLVIAHPDDESMFFSPTINYLT-----SRRHNLHILCMSN 77 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~~~~-----~~G~~V~vv~lT~ 77 (243)
+++||+|.+||.-. +....|++.. ++|++|.++-+.+
T Consensus 1 ~mkiLiI~gspr~~--S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPK--SFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTT--SHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 36899999999976 3455554443 3588999888765
No 151
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=26.20 E-value=2.3e+02 Score=24.18 Aligned_cols=86 Identities=10% Similarity=0.094 Sum_probs=52.6
Q ss_pred HHHHHhCC-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 026131 60 INYLTSRR-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (243)
Q Consensus 60 i~~~~~~G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~ 137 (243)
+.++.++| ....+.++--|+. ......|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=+.-
T Consensus 25 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~ 92 (286)
T 4a5o_A 25 VTERRQQGLRVPGLAVILVGTDPASQVYVAHK--RKDCEEVGF---LSQAYDLPAE-------TSQDDLLALIDRLNDDP 92 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 34455554 4466666655653 233445554 489999999 5566666541 25568888888776666
Q ss_pred CCCEEEeeCCCCCCCCchHHHH
Q 026131 138 SIDLIITFDNYGVSGHCNHRDV 159 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~ 159 (243)
+.+=|+.+-|.. .|.|-..+
T Consensus 93 ~v~GIlVqlPLP--~~id~~~v 112 (286)
T 4a5o_A 93 AIDGILVQLPLP--AHLDASLL 112 (286)
T ss_dssp TCCEEEECSSCC--TTSCHHHH
T ss_pred CCCEEEEcCCCC--CCcCHHHH
Confidence 667788774433 46665443
No 152
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=26.14 E-value=1.4e+02 Score=26.11 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred HHHHHHHh-CC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCc-
Q 026131 58 PTINYLTS-RR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGF- 117 (243)
Q Consensus 58 gti~~~~~-~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~--~d~~- 117 (243)
+.+..+.+ +- .=++-++++.|+.. +.+-.+-.|..+-+.-+|+ ..+..++.|+. +|..
T Consensus 14 ~~~R~lv~~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~~Gi--~~v~LFgvp~~~~Kd~~g 91 (330)
T 1pv8_A 14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGL--RCVLIFGVPSRVPKDERG 91 (330)
T ss_dssp HHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHHHHHHHHHHHHHHTC--CEEEEEECC---------
T ss_pred HHHHHHHhcCCccCHHHceeeEEEecCCCCccccCCCCCceeecHHHHHHHHHHHHHCCC--CEEEEecCCcccCCCccc
Confidence 46677776 31 22677888888752 1333444455555667899 56777888765 4422
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 92 s~A~~~~g~v~~air~iK~~~pdl~vitD 120 (330)
T 1pv8_A 92 SAADSEESPAIEAIHLLRKTFPNLLVACD 120 (330)
T ss_dssp -----CCSHHHHHHHHHHHHSTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 12366667777777778887899876554
No 153
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=25.72 E-value=1.5e+02 Score=21.58 Aligned_cols=56 Identities=21% Similarity=0.237 Sum_probs=34.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL 110 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~ 110 (243)
.++.|||+| ||+..-+-.+-..+.+.|++|. -+.++| +|..+.++.-.. ++.++|.
T Consensus 6 ~r~~rILiV----dD~~~~~~~l~~~L~~~G~~v~-~~a~~g----------~eAl~~~~~~~~---DlvllDi 61 (123)
T 2lpm_A 6 ERRLRVLVV----EDESMIAMLIEDTLCELGHEVA-ATASRM----------QEALDIARKGQF---DIAIIDV 61 (123)
T ss_dssp CCCCCEEEE----SSSTTTSHHHHHHHHHHCCCCC-BCSCCH----------HHHHHHHHHCCS---SEEEECS
T ss_pred CCCCEEEEE----eCCHHHHHHHHHHHHHCCCEEE-EEECCH----------HHHHHHHHhCCC---CEEEEec
Confidence 345689998 8888777777777777898761 134444 333344443333 6888876
No 154
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=25.19 E-value=53 Score=25.53 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEee
Q 026131 124 KSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
+++.+.|.+.++ .+.|+|+|.
T Consensus 53 ~~i~~al~~a~~-~~~DlVitt 73 (164)
T 3pzy_A 53 SPVGEALRKAID-DDVDVILTS 73 (164)
T ss_dssp HHHHHHHHHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHh-CCCCEEEEC
Confidence 567777877775 468999997
No 155
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=25.09 E-value=2.9e+02 Score=22.82 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
...++++|+.++= =|.|-.++ +++++|.+|.++.-.. .+.++..+..+..|. .++.++.. |.
T Consensus 38 ~l~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~r~~--------~~~~~~~~~l~~~~~--~~~~~~~~-Dv- 100 (293)
T 3rih_A 38 DLSARSVLVTGGT-----KGIGRGIATVFARAGANVAVAARSP--------RELSSVTAELGELGA--GNVIGVRL-DV- 100 (293)
T ss_dssp CCTTCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEESSG--------GGGHHHHHHHTTSSS--SCEEEEEC-CT-
T ss_pred CCCCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEECCH--------HHHHHHHHHHHhhCC--CcEEEEEE-eC-
Confidence 4466778887774 24555554 4567899775543211 111222222333342 24544432 22
Q ss_pred CCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 101 ------~d~~~v~~~~~~~~~~~g~iD~lvnn 126 (293)
T 3rih_A 101 ------SDPGSCADAARTVVDAFGALDVVCAN 126 (293)
T ss_dssp ------TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 13456666666666665 57887754
No 156
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=24.92 E-value=2e+02 Score=24.64 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=53.0
Q ss_pred HHHHhC-CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 026131 61 NYLTSR-RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (243)
Q Consensus 61 ~~~~~~-G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~ 138 (243)
.++.++ |....+.++--|+. ......|.+ .++|+.+|+ +.....+|.. .+.+++.+.|.++=..-+
T Consensus 25 ~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~~ 92 (285)
T 3l07_A 25 QEYKHHTAITPKLVAIIVGNDPASKTYVASK--EKACAQVGI---DSQVITLPEH-------TTESELLELIDQLNNDSS 92 (285)
T ss_dssp HHHHHHHCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCTT
T ss_pred HHHHhcCCCCceEEEEEECCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 344443 45666666666654 233445544 489999999 5666666641 255688888887766666
Q ss_pred CCEEEeeCCCCCCCCchHHHHHH
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHH 161 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~ 161 (243)
.+=|+.+-|.. .|.|-..+-+
T Consensus 93 v~GIlvqlPlp--~~id~~~v~~ 113 (285)
T 3l07_A 93 VHAILVQLPLP--AHINKNNVIY 113 (285)
T ss_dssp CCEEEECSSCC--TTSCHHHHHH
T ss_pred CcEEEEcCCCC--CCcCHHHHHh
Confidence 67788774433 5666555333
No 157
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=24.61 E-value=2.8e+02 Score=22.43 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=28.4
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
+.|+..|+| ++.++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 48 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 48 KRAQQADIP---THIIPHEEFP-------SRTDFESTLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------chhHhHHHHHHHHHhcCCCEEEEcc
Confidence 456678994 5555533321 2233345678889999999999863
No 158
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=24.53 E-value=2.2e+02 Score=23.11 Aligned_cols=84 Identities=10% Similarity=0.165 Sum_probs=47.2
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHh---CC--CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTS---RR--HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL 110 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~---~G--~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~ 110 (243)
+...+|+.+++..- |..+..+.+ .+ .+| ++++|+-++ ...+.|+..|+| ++..+.
T Consensus 9 ~~~~~ri~vl~SG~-------gsnl~all~~~~~~~~~eI-~~Vis~~~a---------~~~~~A~~~gIp---~~~~~~ 68 (215)
T 3da8_A 9 PSAPARLVVLASGT-------GSLLRSLLDAAVGDYPARV-VAVGVDREC---------RAAEIAAEASVP---VFTVRL 68 (215)
T ss_dssp CCSSEEEEEEESSC-------CHHHHHHHHHSSTTCSEEE-EEEEESSCC---------HHHHHHHHTTCC---EEECCG
T ss_pred CCCCcEEEEEEeCC-------hHHHHHHHHHHhccCCCeE-EEEEeCCch---------HHHHHHHHcCCC---EEEeCc
Confidence 34456777775442 333333332 22 345 445676542 124457778994 445443
Q ss_pred CCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 111 VDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 111 pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.. +.++.-+.+.+.+++++||+|++..
T Consensus 69 ~~~~-------~r~~~d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 69 ADHP-------SRDAWDVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp GGSS-------SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cccc-------chhhhhHHHHHHHHhhCCCEEEEcC
Confidence 2221 2344456678889999999999873
No 159
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=24.24 E-value=62 Score=27.07 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=25.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCC
Q 026131 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPL 102 (243)
Q Consensus 61 ~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~ 102 (243)
..+.+.|++ .+.+++..........|.+-.+++++..|++.
T Consensus 165 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 165 DHLYEKGCR-KILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHTTCC-SEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCC-eEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 345677865 33444433222345678888999999999853
No 160
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.23 E-value=2.3e+02 Score=22.94 Aligned_cols=74 Identities=8% Similarity=0.029 Sum_probs=42.6
Q ss_pred HHHhCC--CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--
Q 026131 62 YLTSRR--HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-- 137 (243)
Q Consensus 62 ~~~~~G--~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-- 137 (243)
.+.+.| ..-.+.+++..........|.+-.+++++..|. .++...-.. .|+.+...+.+.+++++.
T Consensus 119 ~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~ 188 (306)
T 2vk2_A 119 WLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPN--IKIIRSQSG--------DFTRSKGKEVMESFIKAENN 188 (306)
T ss_dssp HHHHHHTTSCEEEEEEECSTTCHHHHHHHHHHHHHTTTCTT--EEEEEEEEC--------TTCHHHHHHHHHHHHHHTTT
T ss_pred HHHHhcCCCCCeEEEEEcCCCChhHHHHHHHHHHHHhhCCC--eEEEEeccC--------CCcHHHHHHHHHHHHHhCCC
Confidence 444554 124555565432223456788888888888775 122211111 134455566778888764
Q ss_pred --CCCEEEee
Q 026131 138 --SIDLIITF 145 (243)
Q Consensus 138 --~Pd~V~t~ 145 (243)
+||.||+.
T Consensus 189 ~~~~~ai~~~ 198 (306)
T 2vk2_A 189 GKNICMVYAH 198 (306)
T ss_dssp TTTCCEEEES
T ss_pred CCCeeEEEEC
Confidence 68999986
No 161
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=24.15 E-value=2.8e+02 Score=22.36 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+.|+..|+| +..++..++. +.++--+.+.+.+++.+||+|++..
T Consensus 44 v~~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 44 VVERVKVHEIP---VCALDPKTYP-------SKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHTTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCC---EEEeChhhcC-------chhhhHHHHHHHHHhcCCCEEEEeC
Confidence 34566778994 4444432221 2334445677888999999999873
No 162
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=23.82 E-value=3.5e+02 Score=23.25 Aligned_cols=77 Identities=8% Similarity=-0.010 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 026131 57 SPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (243)
Q Consensus 57 Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~ 136 (243)
-..+....+.|.+|...+.+.. .....|-.|..+++.-+|+ . .+..+|.- |.. .++++.+.+..+.+.
T Consensus 123 ~~~i~~ak~~G~~v~~~~~~a~---~~~~e~~~~ia~~~~~~Ga--~---~i~l~DT~-G~~---~P~~v~~lv~~l~~~ 190 (345)
T 1nvm_A 123 KQHIEYARNLGMDTVGFLMMSH---MIPAEKLAEQGKLMESYGA--T---CIYMADSG-GAM---SMNDIRDRMRAFKAV 190 (345)
T ss_dssp HHHHHHHHHHTCEEEEEEESTT---SSCHHHHHHHHHHHHHHTC--S---EEEEECTT-CCC---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEEEEeCC---CCCHHHHHHHHHHHHHCCC--C---EEEECCCc-Ccc---CHHHHHHHHHHHHHh
Confidence 3444444445655544433221 2234566666666666676 2 23333321 211 344555555555555
Q ss_pred cCCCEEEee
Q 026131 137 CSIDLIITF 145 (243)
Q Consensus 137 ~~Pd~V~t~ 145 (243)
..|++.+..
T Consensus 191 ~~~~~pi~~ 199 (345)
T 1nvm_A 191 LKPETQVGM 199 (345)
T ss_dssp SCTTSEEEE
T ss_pred cCCCceEEE
Confidence 544554444
No 163
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=23.60 E-value=74 Score=26.96 Aligned_cols=96 Identities=9% Similarity=0.096 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCchhhh----cchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 026131 36 TGDKKNVLLVIAHPDDES----MFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~----l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~p 111 (243)
....++||++++.+-+.. ..+--.+..+.+.|++|.+++...+... .... ...+. ++..+.+.
T Consensus 17 ~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~-~~~~---------~~~~~---~~~~~~~~ 83 (406)
T 2gek_A 17 RGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVK-LPDY---------VVSGG---KAVPIPYN 83 (406)
T ss_dssp ----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSC-CCTT---------EEECC---CCC-----
T ss_pred CCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcccc-CCcc---------cccCC---cEEecccc
Confidence 455678999997754321 1111234455678999988887765431 0000 00010 11111111
Q ss_pred CCCCCccccCChHHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 112 DFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 112 d~~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
...... .+. ......+.+++++.+||+|+++.+
T Consensus 84 ~~~~~~--~~~-~~~~~~l~~~l~~~~~Dii~~~~~ 116 (406)
T 2gek_A 84 GSVARL--RFG-PATHRKVKKWIAEGDFDVLHIHEP 116 (406)
T ss_dssp ---------CC-HHHHHHHHHHHHHHCCSEEEEECC
T ss_pred CCcccc--ccc-HHHHHHHHHHHHhcCCCEEEECCc
Confidence 000000 011 234567788888899999999853
No 164
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=23.39 E-value=1e+02 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=23.5
Q ss_pred CCCCCcEEEEecCchh-hhcchHHHHHHHHhCCCcEEEEE
Q 026131 36 TGDKKNVLLVIAHPDD-ESMFFSPTINYLTSRRHNLHILC 74 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDD-E~l~~Ggti~~~~~~G~~V~vv~ 74 (243)
....+|||++. .|-- -..-+=+....|.++|++|++++
T Consensus 19 ~~~~MRIL~~~-~p~~GHv~P~l~LA~~L~~rGh~Vt~~t 57 (400)
T 4amg_A 19 YFQSMRALFIT-SPGLSHILPTVPLAQALRALGHEVRYAT 57 (400)
T ss_dssp --CCCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCeEEEEC-CCchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45668999764 3321 23334466667888999997664
No 165
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.26 E-value=2.9e+02 Score=22.13 Aligned_cols=89 Identities=9% Similarity=0.188 Sum_probs=49.1
Q ss_pred HHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-
Q 026131 62 YLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC- 137 (243)
Q Consensus 62 ~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~- 137 (243)
++.+. | ..-.+.+++..........|.+-.+++++.. |++ +...-. ..|+.+.-.+.+.+++++.
T Consensus 124 ~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~ 192 (288)
T 1gud_A 124 FIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIK---LVASQP--------ADWDRIKALDVATNVLQRNP 192 (288)
T ss_dssp HHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EEEeec--------CCccHHHHHHHHHHHHHhCC
Confidence 44455 6 2234555553322223467888888888866 662 211100 1145555566777777764
Q ss_pred CCCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcC
Q 026131 138 SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (243)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~ 171 (243)
+||.||+.+ |. .+..+.+++++.+
T Consensus 193 ~~~ai~~~n--------D~--~A~g~~~al~~~G 216 (288)
T 1gud_A 193 NIKAIYCAN--------DT--MAMGVAQAVANAG 216 (288)
T ss_dssp TCCEEEESS--------HH--HHHHHHHHHHHTT
T ss_pred CceEEEECC--------Cc--hHHHHHHHHHhcC
Confidence 589999862 33 3445666665543
No 166
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=23.17 E-value=4.4e+02 Score=24.17 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=48.0
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
...++++.+.+ -|| - .-|...-+.+-|.+|..+..+.+. +.-++++++.++.++.. ....++.-+|
T Consensus 357 ~l~Gkrv~i~g-d~~-~---~~~la~~L~ElGm~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~-~~~~v~~~~d--- 422 (519)
T 1qgu_B 357 WLHGKKFGLYG-DPD-F---VMGLTRFLLELGCEPTVILSHNAN-----KRWQKAMNKMLDASPYG-RDSEVFINCD--- 422 (519)
T ss_dssp HHTTCEEEEES-CHH-H---HHHHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHHSTTC-TTCEEEESCC---
T ss_pred HcCCCEEEEEC-Cch-H---HHHHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCC-CCCEEEECCC---
Confidence 34677888775 233 2 234444556789998877777653 22244445555555331 1223333222
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
. ..+++.+++.+||+++..
T Consensus 423 -------~----~~l~~~i~~~~pDLiig~ 441 (519)
T 1qgu_B 423 -------L----WHFRSLMFTRQPDFMIGN 441 (519)
T ss_dssp -------H----HHHHHHHHHHCCSEEEEC
T ss_pred -------H----HHHHHHHhhcCCCEEEEC
Confidence 1 234666777799999975
No 167
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=23.15 E-value=1.9e+02 Score=23.55 Aligned_cols=74 Identities=9% Similarity=0.093 Sum_probs=42.3
Q ss_pred chHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH
Q 026131 55 FFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE 132 (243)
Q Consensus 55 ~~Ggti~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~ 132 (243)
+....+..+.+. |++= +.++++... .....|.+..+++++..|++ +......+ .++..+.+.+
T Consensus 118 ~~~~~~~~l~~~~pg~~~-I~~i~~~~~-~~~~~r~~g~~~al~~~gi~---~~~~~~~~----------~~~~~~~~~~ 182 (295)
T 3lft_A 118 PAQQQVELIKALTPNVKT-IGALYSSSE-DNSKTQVEEFKAYAEKAGLT---VETFAVPS----------TNEIASTVTV 182 (295)
T ss_dssp CHHHHHHHHHHHCTTCCE-EEEEEETTC-HHHHHHHHHHHHHHHHTTCE---EEEEEESS----------GGGHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCcE-EEEEeCCCC-cchHHHHHHHHHHHHHcCCE---EEEEecCC----------HHHHHHHHHH
Confidence 445556666665 8652 334443321 23567889999999999983 22211111 1234445555
Q ss_pred HHHhcCCCEEEee
Q 026131 133 EVVNCSIDLIITF 145 (243)
Q Consensus 133 ~i~~~~Pd~V~t~ 145 (243)
+.. +||.||+.
T Consensus 183 l~~--~~dai~~~ 193 (295)
T 3lft_A 183 MTS--KVDAIWVP 193 (295)
T ss_dssp HTT--TCSEEEEC
T ss_pred HHh--cCCEEEEC
Confidence 542 79999986
No 168
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=22.90 E-value=57 Score=29.09 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=19.8
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCchH
Q 026131 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (243)
.+.+...+++++||+|+.. .|.|.|.+-
T Consensus 280 ~~~~l~~l~~f~PdlIvvs--aG~Da~~~D 307 (362)
T 3men_A 280 VDDALRELRRFAPDALVLS--LGFDVYRDD 307 (362)
T ss_dssp HHHHHHHHHHHCCSEEEEE--ECSTTBTTC
T ss_pred HHHHHHHHHhcCCCEEEEE--CcccCcCCC
Confidence 3344456889999999987 676666543
No 169
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=22.89 E-value=1.6e+02 Score=26.66 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=48.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC-C---------CCC-c-c-ccC-----
Q 026131 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD-F---------QDG-F-D-KLW----- 121 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd-~---------~d~-~-~-~~~----- 121 (243)
+..+.++|.+|..+++-.|...+ .+++++.|+.+|+ ..++.+|+.+ + +.+ . . ...
T Consensus 31 a~~Lke~G~eViavt~d~Gq~~E-----le~A~~vA~~lGi--~~~~VvDl~eef~~~v~~p~i~~na~yeg~Y~~g~~l 103 (421)
T 1vl2_A 31 LKWLCEKGFDVIAYVANVGQKDD-----FVAIKEKALKTGA--SKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAI 103 (421)
T ss_dssp HHHHHHTTCEEEEEEEESSCCCC-----HHHHHHHHHHHTC--SEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHH
T ss_pred HHHHHHCCCeEEEEEEEcCCHHH-----HHHHHHHHHHcCC--ceEEEEecHHHHHHhhhhHHHhcCCcccCceeCCCcc
Confidence 34445689999999998886322 3566778999999 3566666532 1 110 0 0 000
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEe
Q 026131 122 NHKSLAKIVEEEVVNCSIDLIIT 144 (243)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t 144 (243)
....+...+.++.++...|.|.+
T Consensus 104 ~Rp~i~~~l~~~A~~~Gad~IA~ 126 (421)
T 1vl2_A 104 ARPLIAKRQVEIAEKEGAQYVAH 126 (421)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEE
Confidence 12234566777778889999876
No 170
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=22.84 E-value=2.9e+02 Score=24.32 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=56.1
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCC---CCCCc-
Q 026131 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVD---FQDGF- 117 (243)
Q Consensus 58 gti~~~~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd---~~d~~- 117 (243)
+.+..+.++- .=++-++++.|+.. +.+-.+-.|..+-+.-+|+ ..+..++.|+ .+|..
T Consensus 25 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~~KD~~g 102 (342)
T 1h7n_A 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAKGL--RSVILFGVPLIPGTKDPVG 102 (342)
T ss_dssp HHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHHHHHHHHHHHHHTTC--CEEEEEEECCSTTCCBTTC
T ss_pred HHHHHHHhcCcCCHHHceeeEEEecCCCCceeCCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecccCccCCCCccc
Confidence 5677777642 22677888998753 1234444555556667999 5677778754 33322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEeeC
Q 026131 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (243)
.+.|+.+-++.+-.+.|++.-||+++..|
T Consensus 103 s~A~~~~g~v~rair~iK~~~pdl~VitD 131 (342)
T 1h7n_A 103 TAADDPAGPVIQGIKFIREYFPELYIICD 131 (342)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23467777787777888888899877555
No 171
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=22.72 E-value=99 Score=22.82 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.7
Q ss_pred CCCcEEEEecCc--hhhhcchHHHHHHH-HhCCCcEEEEEEeCC
Q 026131 38 DKKNVLLVIAHP--DDESMFFSPTINYL-TSRRHNLHILCMSNG 78 (243)
Q Consensus 38 ~~~~vL~v~aHP--DDE~l~~Ggti~~~-~~~G~~V~vv~lT~G 78 (243)
..+++++|..++ |-+....+-.++.. .+.|++|.+....+|
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 456788887776 55666666666654 357999975444444
No 172
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=22.66 E-value=3.2e+02 Score=22.38 Aligned_cols=70 Identities=9% Similarity=-0.023 Sum_probs=40.8
Q ss_pred CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 026131 66 RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (243)
Q Consensus 66 ~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (243)
.|+. .+++++..........|.+.++++++-.+. .+...... ...|+.+...+.+.+++++. +|+.|++
T Consensus 126 ~g~~-~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~~aI~~ 195 (316)
T 1tjy_A 126 KEKA-KVAFFYSSPTVTDQNQWVKEAKAKISQEHP---GWEIVTTQ------FGYNDATKSLQTAEGIIKAYPDLDAIIA 195 (316)
T ss_dssp SSSE-EEEEEESCSSCHHHHHHHHHHHHHHHHHCT---TEEEEEEE------ECTTCHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCC-EEEEEEcCCCChhHHHHHHHHHHHHHhhCC---CcEEEEec------cCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4654 455555322223456788888888865432 22222210 01256666777888888875 6899998
Q ss_pred e
Q 026131 145 F 145 (243)
Q Consensus 145 ~ 145 (243)
.
T Consensus 196 ~ 196 (316)
T 1tjy_A 196 P 196 (316)
T ss_dssp C
T ss_pred C
Confidence 6
No 173
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=22.64 E-value=2.9e+02 Score=21.97 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=47.0
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHH-HHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINY-LTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~-~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~ 114 (243)
...++++|+.++=- .|.|-.+++ +.++|.+|.++. .. ..+.++..+..+..+- .++.++.. |..
T Consensus 19 ~l~~k~vlITGasg----~GIG~~~a~~l~~~G~~V~~~~--r~------~~~~~~~~~~l~~~~~--~~~~~~~~-Dl~ 83 (266)
T 3o38_A 19 LLKGKVVLVTAAAG----TGIGSTTARRALLEGADVVISD--YH------ERRLGETRDQLADLGL--GRVEAVVC-DVT 83 (266)
T ss_dssp TTTTCEEEESSCSS----SSHHHHHHHHHHHTTCEEEEEE--SC------HHHHHHHHHHHHTTCS--SCEEEEEC-CTT
T ss_pred CCCCCEEEEECCCC----CchHHHHHHHHHHCCCEEEEec--CC------HHHHHHHHHHHHhcCC--CceEEEEe-CCC
Confidence 45677888887731 356655554 567898865442 21 2333344444433443 34554432 221
Q ss_pred CCccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 115 DGFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 115 d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 84 -------~~~~v~~~~~~~~~~~g~id~li~~ 108 (266)
T 3o38_A 84 -------STEAVDALITQTVEKAGRLDVLVNN 108 (266)
T ss_dssp -------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -------CHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 3445666666666655 67987754
No 174
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.58 E-value=3e+02 Score=21.97 Aligned_cols=95 Identities=9% Similarity=0.151 Sum_probs=50.5
Q ss_pred HHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 62 YLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 62 ~~~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.+.+. |..-.+++++..........|.+-.+++++.. |+ .+..... ..|+.+.-.+.+.+++++. +
T Consensus 115 ~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~ll~~~~~ 183 (283)
T 2ioy_A 115 FIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDI---KIVAKQA--------ADFDRSKGLSVMENILQAQPK 183 (283)
T ss_dssp HHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTE---EEEEEEE--------CTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCC---EEEeecc--------CCCCHHHHHHHHHHHHHhCCC
Confidence 34455 52335555553322233467888888888776 65 1211100 1134455566677777654 5
Q ss_pred CCEEEeeCCCCCCCCchHHHHHHHHHHHHhhcCCCceEE
Q 026131 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177 (243)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~~~~av~~a~~~~~~~~~~~ 177 (243)
|+.|++.+ |- .+..+.+++++.+..++.+
T Consensus 184 ~~ai~~~n--------D~--~A~g~~~al~~~G~~di~v 212 (283)
T 2ioy_A 184 IDAVFAQN--------DE--MALGAIKAIEAANRQGIIV 212 (283)
T ss_dssp CCEEEESS--------HH--HHHHHHHHHHHTTCCCCEE
T ss_pred ccEEEECC--------ch--HHHHHHHHHHHCCCCCcEE
Confidence 89998862 33 3445666666544334443
No 175
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=22.41 E-value=3.7e+02 Score=23.02 Aligned_cols=73 Identities=18% Similarity=-0.059 Sum_probs=42.6
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC---CCccccCCh---HHHHHHHH
Q 026131 58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ---DGFDKLWNH---KSLAKIVE 131 (243)
Q Consensus 58 gti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~---d~~~~~~~~---~~l~~~l~ 131 (243)
-.|.+..+.|- .+++|+.+ .|..+++..+|. ++....-+-.. -|.....+. .+.++.+.
T Consensus 154 e~I~~A~~~gL-~Ti~~v~~-----------~eeA~amA~agp---DiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~ 218 (286)
T 2p10_A 154 EMIAEAHKLDL-LTTPYVFS-----------PEDAVAMAKAGA---DILVCHMGLTTGGAIGARSGKSMDDCVSLINECI 218 (286)
T ss_dssp HHHHHHHHTTC-EECCEECS-----------HHHHHHHHHHTC---SEEEEECSCC---------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-eEEEecCC-----------HHHHHHHHHcCC---CEEEECCCCCCCCcccCCCcccHHHhHHHHHHHH
Confidence 45666666665 45566665 344456678888 45555544111 111222233 35788888
Q ss_pred HHHHhcCCCEEEee
Q 026131 132 EEVVNCSIDLIITF 145 (243)
Q Consensus 132 ~~i~~~~Pd~V~t~ 145 (243)
+.+++.+||+++..
T Consensus 219 ~a~~~vnpdvivLc 232 (286)
T 2p10_A 219 EAARTIRDDIIILS 232 (286)
T ss_dssp HHHHHHCSCCEEEE
T ss_pred HHHHHhCCCcEEEe
Confidence 88999999987665
No 176
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=22.14 E-value=2e+02 Score=25.43 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=32.7
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 026131 60 INYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLKIPLEQVKVLDLV 111 (243)
Q Consensus 60 i~~~~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LGv~~~~~~~l~~p 111 (243)
+..+.++|.+|..+++..+..++. ...-.+.+++.|+.||++ ++..++.
T Consensus 34 a~lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp---~~vvd~~ 87 (380)
T 2der_A 34 AWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE---LHTVNFA 87 (380)
T ss_dssp HHHHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCC---EEEEECH
T ss_pred HHHHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCc---EEEEeCc
Confidence 344556799999999987754321 123345567889999994 6666654
No 177
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=22.05 E-value=2.4e+02 Score=22.94 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCCEEEeeCCCCCCCCchHHHHHHHHH
Q 026131 128 KIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIW 164 (243)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~~~~av~ 164 (243)
.+|...+ +.+++.|+.. .+..+=.||....-...
T Consensus 83 ~Al~~a~-~~g~~~I~i~--Ga~GGR~DH~lani~lL 116 (223)
T 3k94_A 83 IALDWAV-EQTARCIRLF--GATGGRLDHLFGNVELL 116 (223)
T ss_dssp HHHHHHH-TTCCSEEEEE--SCSSSSHHHHHHHHHHH
T ss_pred HHHHHHH-HcCCCEEEEE--cCCCCchhHHHHHHHHH
Confidence 3343333 3477888887 45558999987766543
No 178
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=21.98 E-value=53 Score=29.01 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=18.9
Q ss_pred HHHHHHHHHhcCCCEEEeeCCCCCCCCch
Q 026131 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (243)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (243)
.+.+...+++++||+|+.. .|.|.|.+
T Consensus 262 ~~~~l~~l~~f~Pd~ivvs--aG~D~~~~ 288 (341)
T 3q9b_A 262 LTDSLKRIAAFGAEAIVVS--LGVDTFEQ 288 (341)
T ss_dssp HHHHHHHHHHHTCSCEEEE--ECCTTBTT
T ss_pred HHHHHHHHHhhCCCEEEEe--CCccccCC
Confidence 3334456789999999987 66666544
No 179
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=21.98 E-value=96 Score=27.74 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=28.0
Q ss_pred ccCCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEe
Q 026131 34 LTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMS 76 (243)
Q Consensus 34 ~~~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT 76 (243)
|+....+++|+|.+||+-+.-...-.++...+++.+|.+.-+.
T Consensus 231 m~~~~~mkiLvi~gspr~~ss~~n~~l~~~~~~~~~v~v~dL~ 273 (413)
T 3l9w_A 231 VPRGSSGMILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLY 273 (413)
T ss_dssp ------CCEEEEECCSCGGGCSHHHHHHHHHHTSSSEEEEEHH
T ss_pred CCCCCCCCEEEEEECCCcchHHHHHHHHHHHhcCCCEEEEEch
Confidence 4444457899999999987644566677666667777777663
No 180
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=21.93 E-value=1.5e+02 Score=22.01 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=44.6
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEeeCC
Q 026131 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITFDN 147 (243)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~d~ 147 (243)
+.++++|-|. -.+++.++++.+ |- .+++..++++... +.+++.+.+.+.+++... .+++..|-
T Consensus 6 i~iiivsHG~-------~A~gl~~~~~~i~G~-~~~i~ai~~~~~~-------~~~~~~~~i~~~i~~~~~~gvliLtDl 70 (142)
T 3bed_A 6 PKLILMSHGR-------MAEETLASTQMIVGE-LADAAIVSMTAED-------GLSGTQAKLAAILKEAGNVPTLVLADL 70 (142)
T ss_dssp SEEEEEEETT-------HHHHHHHHHHHHHCT-TCCCEEEEECTTT-------HHHHHHHHHHHHHHHHCSCCEEEEESS
T ss_pred ccEEEEcChH-------HHHHHHHHHHHHcCC-CCCEEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5677888773 236677777765 74 3678888875311 345778888888887653 57777887
Q ss_pred CCC
Q 026131 148 YGV 150 (243)
Q Consensus 148 ~g~ 150 (243)
.|+
T Consensus 71 ~GG 73 (142)
T 3bed_A 71 XGG 73 (142)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 181
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=21.78 E-value=2.4e+02 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCEEEeeCC
Q 026131 124 KSLAKIVEEEVVNCSIDLIITFDN 147 (243)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (243)
..+.+.|.++|++++||.+..=.+
T Consensus 45 ~~i~~~l~~~i~~~~Pd~vaiE~v 68 (158)
T 1hjr_A 45 KLIYAGVTEIITQFQPDYFAIEQV 68 (158)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEeec
Confidence 467778999999999999877443
No 182
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=21.73 E-value=3.2e+02 Score=22.00 Aligned_cols=86 Identities=10% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..++++|+.++= =|.|-.++ +++++|.+|.++...+ ..+.++..+..+..|. ++.++.. |.
T Consensus 16 l~~k~~lVTGas-----~gIG~aia~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv-- 77 (270)
T 3is3_A 16 LDGKVALVTGSG-----RGIGAAVAVHLGRLGAKVVVNYANS-------TKDAEKVVSEIKALGS---DAIAIKA-DI-- 77 (270)
T ss_dssp CTTCEEEESCTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CT--
T ss_pred cCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEcCCC-------HHHHHHHHHHHHhcCC---cEEEEEc-CC--
Confidence 456778887764 24555554 4567899876543222 2333444444455565 4444432 22
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 78 -----~~~~~v~~~~~~~~~~~g~id~lvnn 103 (270)
T 3is3_A 78 -----RQVPEIVKLFDQAVAHFGHLDIAVSN 103 (270)
T ss_dssp -----TSHHHHHHHHHHHHHHHSCCCEEECC
T ss_pred -----CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 14456666666666665 67887743
No 183
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=21.67 E-value=2.8e+02 Score=22.57 Aligned_cols=73 Identities=10% Similarity=0.053 Sum_probs=42.3
Q ss_pred hHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH
Q 026131 56 FSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE 133 (243)
Q Consensus 56 ~Ggti~~~~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~ 133 (243)
...++..+.+. |++ .+.++++.. ...+..|.+..+++++..|++ +......+ .++..+.+.++
T Consensus 126 ~~~~~~~l~~~~Pg~~-~I~~i~~~~-~~~~~~r~~g~~~al~~~gi~---~~~~~~~~----------~~~~~~~~~~l 190 (302)
T 2qh8_A 126 VEQHVELIKEILPNVK-SIGVVYNPG-EANAVSLMELLKLSAAKHGIK---LVEATALK----------SADVQSATQAI 190 (302)
T ss_dssp HHHHHHHHHHHSTTCC-EEEEEECTT-CHHHHHHHHHHHHHHHHTTCE---EEEEECSS----------GGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCc-EEEEEecCC-CcchHHHHHHHHHHHHHcCCE---EEEEecCC----------hHHHHHHHHHH
Confidence 34455666665 876 334444332 223577889999999999983 32221111 12344555555
Q ss_pred HHhcCCCEEEee
Q 026131 134 VVNCSIDLIITF 145 (243)
Q Consensus 134 i~~~~Pd~V~t~ 145 (243)
+. +||.||+.
T Consensus 191 ~~--~~dai~~~ 200 (302)
T 2qh8_A 191 AE--KSDVIYAL 200 (302)
T ss_dssp GG--GCSEEEEC
T ss_pred hc--cCCEEEEC
Confidence 42 79999986
No 184
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.22 E-value=3.4e+02 Score=22.20 Aligned_cols=67 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (243)
|++ .+.+++..........|.+-++++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|++
T Consensus 127 G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~aI~~ 194 (325)
T 2x7x_A 127 GKG-NIVELTGLSGSTPAMERHQGFMAAISKFPDIK---LIDKAD--------AAWERGPAEIEMDSMLRRHPKIDAVYA 194 (325)
T ss_dssp TEE-EEEEEESCTTSHHHHHHHHHHHHHHHTCTEEE---EEEEEE--------CTTSHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred CCc-eEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EEeeec--------CCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 653 4455553322234567888888898887 662 211101 1134455566777777764 6899998
Q ss_pred e
Q 026131 145 F 145 (243)
Q Consensus 145 ~ 145 (243)
.
T Consensus 195 ~ 195 (325)
T 2x7x_A 195 H 195 (325)
T ss_dssp S
T ss_pred C
Confidence 6
No 185
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=20.98 E-value=2.6e+02 Score=20.67 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=24.6
Q ss_pred CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 026131 67 RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (243)
Q Consensus 67 G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~p 111 (243)
+.+-.++.+|+|...+.......+..+.++..|+ .++..++.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i---~i~~igvg 143 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGA---SVYCVGVL 143 (182)
T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTC---EEEEEECS
T ss_pred CCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCC---EEEEEeCC
Confidence 4556788888887654332223344445566677 56666653
No 186
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=20.87 E-value=4.9e+02 Score=23.91 Aligned_cols=83 Identities=19% Similarity=0.065 Sum_probs=46.0
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc--CCCCCcEEEccCCCC
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVL--KIPLEQVKVLDLVDF 113 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L--Gv~~~~~~~l~~pd~ 113 (243)
...++|+.+. +-||=. + |+..-+.+-|.+|..+..+++. +.-.+++++.++-+ |. ...++.-+|
T Consensus 361 ~l~GKrvaI~-gd~~~~-~---~la~fL~elGm~vv~v~~~~~~-----~~~~~~~~~~l~~~~~~~---~~~v~~~~D- 426 (523)
T 3u7q_B 361 WLHGKRFALW-GDPDFV-M---GLVKFLLELGCEPVHILCHNGN-----KRWKKAVDAILAASPYGK---NATVYIGKD- 426 (523)
T ss_dssp HHTTCEEEEE-CSHHHH-H---HHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHTSGGGT---TCEEEESCC-
T ss_pred hcCCCEEEEE-CCchHH-H---HHHHHHHHcCCEEEEEEeCCCC-----HHHHHHHHHHHhhccCCC---CcEEEECCC-
Confidence 3567888877 444433 3 4444555789988777766553 22233344444322 22 122333222
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 114 ~d~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...+++.+++.+||++++.
T Consensus 427 -------------~~~l~~~i~~~~pDLlig~ 445 (523)
T 3u7q_B 427 -------------LWHLRSLVFTDKPDFMIGN 445 (523)
T ss_dssp -------------HHHHHHHHHHTCCSEEEEC
T ss_pred -------------HHHHHHHHHhcCCCEEEEC
Confidence 2234667778899999985
No 187
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=20.84 E-value=4.5e+02 Score=23.46 Aligned_cols=82 Identities=20% Similarity=0.084 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcC-CCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLK-IPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LG-v~~~~~~~l~~pd~~d 115 (243)
..++|+.+.+- || -.+ +...-+.+-|.+|..+..+.++ +.-++++++.++.+| . +..++.-+|
T Consensus 310 l~gkrv~i~~~-~~-~~~---~l~~~L~elG~~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~---~~~v~~~~d--- 373 (458)
T 1mio_B 310 LQGKKVALLGD-PD-EII---ALSKFIIELGAIPKYVVTGTPG-----MKFQKEIDAMLAEAGIE---GSKVKVEGD--- 373 (458)
T ss_dssp HTTCEEEEEEC-HH-HHH---HHHHHHHTTTCEEEEEEESSCC-----HHHHHHHHHHHHTTTCC---SCEEEESCB---
T ss_pred cCCCEEEEEcC-ch-HHH---HHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCC---CCEEEECCC---
Confidence 35677776654 53 333 4444455789988877776642 222344444455555 3 222332122
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (243)
...+++.+++.+||+++..
T Consensus 374 -----------~~~l~~~i~~~~pDl~ig~ 392 (458)
T 1mio_B 374 -----------FFDVHQWIKNEGVDLLISN 392 (458)
T ss_dssp -----------HHHHHHHHHHSCCSEEEES
T ss_pred -----------HHHHHHHHHhcCCCEEEeC
Confidence 2235778888899999975
No 188
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=20.66 E-value=1.2e+02 Score=25.81 Aligned_cols=41 Identities=20% Similarity=0.044 Sum_probs=25.8
Q ss_pred CCcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCCC
Q 026131 39 KKNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNGN 79 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Gg-----ti~~~~~~G~~V~vv~lT~G~ 79 (243)
.++||+|+.+.--...|..+ ....+.++|++|++++...+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~ 47 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 57899999763222233323 234555789999999966544
No 189
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=20.47 E-value=2.3e+02 Score=19.88 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCCEEEeeC
Q 026131 126 LAKIVEEEVVNCSIDLIITFD 146 (243)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d 146 (243)
..+.|.+..++.+.|+|+.-.
T Consensus 94 ~~~~I~~~a~~~~~dliV~G~ 114 (143)
T 3fdx_A 94 PKDKILALAKSLPADLVIIAS 114 (143)
T ss_dssp HHHHHHHHHHHTTCSEEEEES
T ss_pred hHHHHHHHHHHhCCCEEEEeC
Confidence 466778888899999988864
No 190
>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A
Probab=20.37 E-value=4.7e+02 Score=23.45 Aligned_cols=92 Identities=15% Similarity=0.128 Sum_probs=57.1
Q ss_pred CCCCCcEEEEecCchhhhcchHHHHHH-HH-hCCCcEEEEEEeCCCCCC----chHHHHHHHHHHHHHcCCCCCcEEEcc
Q 026131 36 TGDKKNVLLVIAHPDDESMFFSPTINY-LT-SRRHNLHILCMSNGNADG----MGNIRKDELHRACAVLKIPLEQVKVLD 109 (243)
Q Consensus 36 ~~~~~~vL~v~aHPDDE~l~~Ggti~~-~~-~~G~~V~vv~lT~G~~~~----~~~~R~~E~~~A~~~LGv~~~~~~~l~ 109 (243)
...+|++|++++= =|.|-..+. ++ +.|..+.+++......+. .+.....+..+.++..|. +...++
T Consensus 47 ~~~pK~vLVtGaS-----sGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~---~a~~i~ 118 (401)
T 4ggo_A 47 AKAPKNVLVLGCS-----NGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGL---YSVTID 118 (401)
T ss_dssp SCCCCEEEEESCS-----SHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTC---CEEEEE
T ss_pred cCCCCEEEEECCC-----CcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCC---CceeEe
Confidence 4568899999984 456644332 33 568888777766554432 345677777888888898 344444
Q ss_pred CCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 026131 110 LVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (243)
Q Consensus 110 ~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (243)
. |. -+.+.+.+.+.++.+++ +.|+++
T Consensus 119 ~-Dv-------~d~e~i~~vi~~i~~~~G~IDiLV 145 (401)
T 4ggo_A 119 G-DA-------FSDEIKAQVIEEAKKKGIKFDLIV 145 (401)
T ss_dssp S-CT-------TSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred C-CC-------CCHHHHHHHHHHHHHhcCCCCEEE
Confidence 2 21 14455566666666666 567765
No 191
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=20.37 E-value=3.6e+02 Score=22.14 Aligned_cols=85 Identities=8% Similarity=-0.033 Sum_probs=49.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..+|.+|+-++-- |.|-.++ +++++|.+|.+. +- .+.+.+|..+..+..|. ++..+.. |.
T Consensus 7 L~gKvalVTGas~-----GIG~aia~~la~~Ga~Vvi~---~~-----~~~~~~~~~~~l~~~g~---~~~~~~~-Dv-- 67 (255)
T 4g81_D 7 LTGKTALVTGSAR-----GLGFAYAEGLAAAGARVILN---DI-----RATLLAESVDTLTRKGY---DAHGVAF-DV-- 67 (255)
T ss_dssp CTTCEEEETTCSS-----HHHHHHHHHHHHTTCEEEEC---CS-----CHHHHHHHHHHHHHTTC---CEEECCC-CT--
T ss_pred CCCCEEEEeCCCc-----HHHHHHHHHHHHCCCEEEEE---EC-----CHHHHHHHHHHHHhcCC---cEEEEEe-eC--
Confidence 4566777766652 4555554 456789987443 21 13344455555555565 4544431 22
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+++.+.+.++.+++ ++|+++.-
T Consensus 68 -----~~~~~v~~~~~~~~~~~G~iDiLVNN 93 (255)
T 4g81_D 68 -----TDELAIEAAFSKLDAEGIHVDILINN 93 (255)
T ss_dssp -----TCHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred -----CCHHHHHHHHHHHHHHCCCCcEEEEC
Confidence 25567778888888887 57988754
No 192
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=20.26 E-value=2.8e+02 Score=22.34 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 026131 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (243)
Q Consensus 37 ~~~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d 115 (243)
..++++|+.++= =|.|-.++ +++++|.+|.++.-+.. ...+.++..+..+..|. ++.++.. |.
T Consensus 9 l~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~r~~~-----~~~~~~~~~~~~~~~~~---~~~~~~~-Dv-- 72 (262)
T 3ksu_A 9 LKNKVIVIAGGI-----KNLGALTAKTFALESVNLVLHYHQAK-----DSDTANKLKDELEDQGA---KVALYQS-DL-- 72 (262)
T ss_dssp CTTCEEEEETCS-----SHHHHHHHHHHTTSSCEEEEEESCGG-----GHHHHHHHHHHHHTTTC---EEEEEEC-CC--
T ss_pred CCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEecCcc-----CHHHHHHHHHHHHhcCC---cEEEEEC-CC--
Confidence 456788888875 34555554 45568988765543221 12333444444444454 4544432 22
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 116 ~~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 73 -----~d~~~v~~~~~~~~~~~g~iD~lvnn 98 (262)
T 3ksu_A 73 -----SNEEEVAKLFDFAEKEFGKVDIAINT 98 (262)
T ss_dssp -----CSHHHHHHHHHHHHHHHCSEEEEEEC
T ss_pred -----CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 14456666666666665 57887754
No 193
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=20.23 E-value=3.2e+02 Score=21.53 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=44.7
Q ss_pred CCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 026131 39 KKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (243)
Q Consensus 39 ~~~vL~v~aHPDDE~l~~Ggti~-~~~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~ 117 (243)
++++|+.++= =|.|-.++ +++++|.+|.++.-.+ ..+.++..+..+..|. ++.++.. |.
T Consensus 4 ~k~~lVTGas-----~gIG~~ia~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv---- 63 (246)
T 3osu_A 4 TKSALVTGAS-----RGIGRSIALQLAEEGYNVAVNYAGS-------KEKAEAVVEEIKAKGV---DSFAIQA-NV---- 63 (246)
T ss_dssp SCEEEETTCS-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTS---CEEEEEC-CT----
T ss_pred CCEEEEECCC-----ChHHHHHHHHHHHCCCEEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEc-cC----
Confidence 4566666553 24455444 4567899875543221 2333444444444565 4444331 22
Q ss_pred cccCChHHHHHHHHHHHHhc-CCCEEEee
Q 026131 118 DKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (243)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (243)
-+.+++.+.+.++.+++ ++|+++--
T Consensus 64 ---~d~~~v~~~~~~~~~~~g~id~lv~n 89 (246)
T 3osu_A 64 ---ADADEVKAMIKEVVSQFGSLDVLVNN 89 (246)
T ss_dssp ---TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ---CCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 13456666666666665 68987754
No 194
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=20.20 E-value=3.1e+02 Score=21.70 Aligned_cols=72 Identities=11% Similarity=0.001 Sum_probs=40.9
Q ss_pred HHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 026131 62 YLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (243)
Q Consensus 62 ~~~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~pd~~d~~~~~~~~~~l~~~l~~~i~~~-~ 138 (243)
.+.+. | ++ .+++++..........|.+-++++++..|.. +.-.-.. .|+.+...+.+.+++++. +
T Consensus 123 ~L~~~~G~~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~~~--------~~~~~~~~~~~~~~l~~~~~ 190 (289)
T 3brs_A 123 VTKNLVRKSG-KIGVISFVKNSKTAMDREEGLKIGLSDDSNK---IEAIYYC--------DSNYDKAYDGTVELLTKYPD 190 (289)
T ss_dssp HHHHHTSSSC-EEEEEESCTTSHHHHHHHHHHHHHHGGGGGG---EEEEEEC--------TTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCc-eEEEEECCCCCccHHHHHHHHHHHHHhCCCc---EEeeecC--------CCCHHHHHHHHHHHHHhCCC
Confidence 34454 6 43 3445543322234567888889999888862 2111011 134455566777777764 5
Q ss_pred CCEEEee
Q 026131 139 IDLIITF 145 (243)
Q Consensus 139 Pd~V~t~ 145 (243)
||.|++.
T Consensus 191 ~~ai~~~ 197 (289)
T 3brs_A 191 ISVMVGL 197 (289)
T ss_dssp EEEEEES
T ss_pred ceEEEEC
Confidence 7888875
Done!