Query 026133
Match_columns 243
No_of_seqs 176 out of 550
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 99.0 1.4E-10 4.8E-15 88.2 4.6 92 2-99 3-99 (101)
2 2ffw_A Midline-1; B-BOX, ring 93.8 0.034 1.2E-06 40.7 2.7 43 2-44 30-75 (78)
3 2dja_A Midline-2; tripartite m 93.6 0.033 1.1E-06 40.5 2.2 58 39-102 2-61 (84)
4 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.031 1.1E-06 41.6 0.8 43 55-97 4-49 (101)
5 3ddt_A E3 ubiquitin-protein li 91.0 0.079 2.7E-06 34.7 1.4 41 54-100 6-47 (48)
6 2did_A Tripartite motif protei 90.8 0.073 2.5E-06 35.6 1.1 41 55-102 9-50 (53)
7 2yvr_A Transcription intermedi 90.7 0.078 2.7E-06 34.9 1.1 41 55-101 7-47 (50)
8 1fre_A Nuclear factor XNF7; zi 89.8 0.19 6.5E-06 31.8 2.4 30 55-85 4-34 (42)
9 2yrg_A Tripartite motif-contai 89.5 0.19 6.3E-06 34.7 2.3 41 55-102 15-56 (59)
10 2d8u_A Ubiquitin ligase TRIM63 89.0 0.14 4.9E-06 35.1 1.4 43 54-102 8-51 (64)
11 2csv_A Tripartite motif protei 86.2 0.24 8.3E-06 35.0 1.3 42 54-102 18-59 (72)
12 2did_A Tripartite motif protei 81.5 1 3.4E-05 29.8 2.7 41 3-50 9-50 (53)
13 2egm_A Tripartite motif-contai 81.4 0.24 8.2E-06 33.9 -0.5 31 54-85 18-49 (57)
14 2ffw_A Midline-1; B-BOX, ring 80.2 0.38 1.3E-05 35.0 0.2 43 54-96 30-75 (78)
15 2yrg_A Tripartite motif-contai 76.2 1.7 5.9E-05 29.6 2.7 41 3-50 15-56 (59)
16 2yvr_A Transcription intermedi 75.7 1.8 6.1E-05 28.2 2.5 41 3-49 7-47 (50)
17 2dja_A Midline-2; tripartite m 70.4 2.9 9.8E-05 29.9 2.7 41 4-50 20-61 (84)
18 3ddt_A E3 ubiquitin-protein li 68.9 3.2 0.00011 26.8 2.5 37 5-47 9-46 (48)
19 2d8u_A Ubiquitin ligase TRIM63 68.8 2.2 7.7E-05 28.9 1.8 42 3-50 9-51 (64)
20 1fre_A Nuclear factor XNF7; zi 68.7 1.7 5.9E-05 27.2 1.1 31 3-34 4-35 (42)
21 2egm_A Tripartite motif-contai 61.1 3.7 0.00013 27.8 1.7 31 3-34 19-50 (57)
22 4hc9_A Trans-acting T-cell-spe 59.3 3.8 0.00013 32.2 1.7 80 2-82 5-88 (115)
23 2d8v_A Zinc finger FYVE domain 59.3 6.4 0.00022 28.6 2.7 46 3-50 9-55 (67)
24 3pfq_A PKC-B, PKC-beta, protei 58.3 5.4 0.00018 38.8 2.9 74 4-88 50-144 (674)
25 2csv_A Tripartite motif protei 56.4 4.7 0.00016 28.1 1.7 41 3-50 19-59 (72)
26 2d8v_A Zinc finger FYVE domain 52.1 5.4 0.00019 28.9 1.4 45 53-99 7-52 (67)
27 1z60_A TFIIH basal transcripti 46.3 5.1 0.00018 28.1 0.4 32 4-35 17-51 (59)
28 2xzl_A ATP-dependent helicase 41.6 8.8 0.0003 38.7 1.5 81 3-83 12-107 (802)
29 2jne_A Hypothetical protein YF 39.9 21 0.0007 27.8 3.0 10 1-10 31-40 (101)
30 2pv0_B DNA (cytosine-5)-methyl 38.2 13 0.00046 34.9 2.0 70 2-81 50-122 (386)
31 2fc7_A ZZZ3 protein; structure 37.5 51 0.0017 24.1 4.8 30 56-85 23-59 (82)
32 1tot_A CREB-binding protein; z 33.7 13 0.00046 25.0 0.9 30 2-31 6-37 (52)
33 2wjy_A Regulator of nonsense t 33.6 14 0.00049 37.2 1.5 80 3-82 7-101 (800)
34 2jrp_A Putative cytoplasmic pr 31.7 58 0.002 24.2 4.2 60 1-84 1-61 (81)
35 2fc7_A ZZZ3 protein; structure 31.6 56 0.0019 23.9 4.1 32 2-33 21-59 (82)
36 1qxf_A GR2, 30S ribosomal prot 31.4 13 0.00045 26.8 0.6 30 1-31 6-35 (66)
37 2lri_C Autoimmune regulator; Z 30.0 21 0.00073 25.0 1.5 24 3-34 13-36 (66)
38 3u5c_b RP61, YS20, 40S ribosom 29.2 18 0.00062 27.1 1.1 29 1-30 33-61 (82)
39 2epr_A POZ-, at HOOK-, and zin 28.7 12 0.00041 22.8 -0.0 37 21-61 11-47 (48)
40 1f62_A Transcription factor WS 28.3 31 0.0011 22.3 2.0 26 4-34 2-27 (51)
41 3j20_W 30S ribosomal protein S 28.2 15 0.00053 26.2 0.5 30 1-31 14-43 (63)
42 1v5n_A PDI-like hypothetical p 28.0 39 0.0013 24.9 2.8 42 41-88 34-75 (89)
43 2xzm_6 RPS27E; ribosome, trans 27.4 16 0.00056 27.3 0.5 29 1-30 31-59 (81)
44 2e5r_A Dystrobrevin alpha; ZZ 27.0 56 0.0019 22.6 3.3 30 3-32 12-45 (63)
45 3iz6_X 40S ribosomal protein S 26.1 18 0.00061 27.4 0.6 29 1-30 35-63 (86)
46 1mm2_A MI2-beta; PHD, zinc fin 24.9 64 0.0022 21.9 3.2 24 3-34 10-33 (61)
47 1v6g_A Actin binding LIM prote 24.3 24 0.00083 24.4 1.0 20 14-33 3-26 (81)
48 3a1b_A DNA (cytosine-5)-methyl 23.0 49 0.0017 27.4 2.7 70 2-81 36-108 (159)
49 2yqq_A Zinc finger HIT domain- 22.2 36 0.0012 23.5 1.5 29 4-34 14-43 (56)
50 2dip_A Zinc finger SWIM domain 21.7 54 0.0019 24.8 2.6 28 3-30 32-63 (98)
51 2ytg_A ZFP-95, zinc finger pro 21.2 33 0.0011 20.2 1.0 37 20-60 10-46 (46)
52 2epq_A POZ-, at HOOK-, and zin 21.0 13 0.00043 22.2 -1.0 37 21-61 9-45 (45)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=88.16 Aligned_cols=92 Identities=23% Similarity=0.446 Sum_probs=76.6
Q ss_pred CccccccCC---CCeEEEecccccccchhhchhcccCcccccCcccc-eeccccCCCCCCcccccCCeeEEeccCccccc
Q 026133 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC 77 (243)
Q Consensus 2 ~~~Cd~C~~---apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~Rv-pL~~~~~~~p~Cd~C~~~pA~v~C~~D~a~LC 77 (243)
++.|++|.+ .+|+.+|..+.+.||..|...+|..++.+++|.++ |+...+.+...|+.|+.++..+||..|...+|
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC 82 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC 82 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence 468999984 68999999999999999999999988878999987 55544445678999998889999999999999
Q ss_pred ccCCC-CccCCCCCCCCCcceee
Q 026133 78 KDCDE-PIHSPGSLSANHQRFLA 99 (243)
Q Consensus 78 ~~CD~-~iHsan~ls~~HqR~~l 99 (243)
..|.. ..| +.|...++
T Consensus 83 ~~C~~~~~H------~~H~~~~l 99 (101)
T 2jun_A 83 ALCKLVGRH------RDHQVAAL 99 (101)
T ss_dssp HHHHHHTTT------SSSCBCCC
T ss_pred hhcCCCCCc------CCCCeecC
Confidence 99986 566 34665554
No 2
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=93.81 E-value=0.034 Score=40.73 Aligned_cols=43 Identities=26% Similarity=0.583 Sum_probs=36.4
Q ss_pred CccccccCC---CCeEEEecccccccchhhchhcccCcccccCccc
Q 026133 2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQR 44 (243)
Q Consensus 2 ~~~Cd~C~~---apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~R 44 (243)
.+.||+|.. .+|+..|..+.+.||..|=...|...+.+++|.=
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 368999986 6799999999999999998667987777778863
No 3
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=93.57 E-value=0.033 Score=40.45 Aligned_cols=58 Identities=19% Similarity=0.208 Sum_probs=41.7
Q ss_pred ccCcccceeccc-cCCCCCCcccccCCeeEEeccCcccccccCCC-CccCCCCCCCCCcceeeccc
Q 026133 39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (243)
Q Consensus 39 a~rH~RvpL~~~-~~~~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iHsan~ls~~HqR~~l~g~ 102 (243)
+.+|..+.-... ......|+.|+..+..+||..|...+|..|.. .-| +.|...++..+
T Consensus 2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 356776654331 22355799998888899999999999999986 555 45766666654
No 4
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.52 E-value=0.031 Score=41.65 Aligned_cols=43 Identities=21% Similarity=0.526 Sum_probs=36.2
Q ss_pred CCCccccc---CCeeEEeccCcccccccCCCCccCCCCCCCCCcce
Q 026133 55 PPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF 97 (243)
Q Consensus 55 p~Cd~C~~---~pA~v~C~~D~a~LC~~CD~~iHsan~ls~~HqR~ 97 (243)
..|++|.+ .+|..+|..+...||..|....|..+....+|+++
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~ 49 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI 49 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence 35999985 57899999999999999999888877666788765
No 5
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=90.99 E-value=0.079 Score=34.75 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCCCcccccCCeeEEeccCcccccccCC-CCccCCCCCCCCCcceeec
Q 026133 54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT 100 (243)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD-~~iHsan~ls~~HqR~~l~ 100 (243)
...|..|+.++..+||..|...+|..|. ...| +.|..++++
T Consensus 6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ 47 (48)
T 3ddt_A 6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ 47 (48)
T ss_dssp SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence 4569999978889999999999999996 4455 456665543
No 6
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=90.84 E-value=0.073 Score=35.57 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=32.7
Q ss_pred CCCcccccCCeeEEeccCcccccccCCC-CccCCCCCCCCCcceeeccc
Q 026133 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (243)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iHsan~ls~~HqR~~l~g~ 102 (243)
..|+.|+ ++..+||..|...+|..|.. .-| +.|...++..+
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 3599998 77899999999999999986 555 56777776643
No 7
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=90.68 E-value=0.078 Score=34.93 Aligned_cols=41 Identities=24% Similarity=0.579 Sum_probs=33.1
Q ss_pred CCCcccccCCeeEEeccCcccccccCCCCccCCCCCCCCCcceeecc
Q 026133 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG 101 (243)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iHsan~ls~~HqR~~l~g 101 (243)
..|+.|+.++..+||..|...+|..|....| +.|...++..
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 3599998888899999999999999986555 4677766654
No 8
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=89.79 E-value=0.19 Score=31.80 Aligned_cols=30 Identities=23% Similarity=0.571 Sum_probs=24.5
Q ss_pred CCCcccccCCeeEEeccCcccccccCCC-Ccc
Q 026133 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (243)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH 85 (243)
..|+.|+ ++..+||..|...+|..|.. .-|
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence 3599997 66788999999999999986 445
No 9
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.48 E-value=0.19 Score=34.66 Aligned_cols=41 Identities=27% Similarity=0.611 Sum_probs=32.4
Q ss_pred CCCcccccCCeeEEeccCcccccccCCC-CccCCCCCCCCCcceeeccc
Q 026133 55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (243)
Q Consensus 55 p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iHsan~ls~~HqR~~l~g~ 102 (243)
..|..|+ ++..+||..|...+|..|.. .-| +.|..+++..+
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 4599997 56789999999999999986 455 56777777654
No 10
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=89.01 E-value=0.14 Score=35.11 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=33.4
Q ss_pred CCCCcccccCCeeEEeccCcccccccCCC-CccCCCCCCCCCcceeeccc
Q 026133 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI 102 (243)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iHsan~ls~~HqR~~l~g~ 102 (243)
...|+.|+.++..+||..|...+|..|.. ..| +.|...++..+
T Consensus 8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a 51 (64)
T 2d8u_A 8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSV 51 (64)
T ss_dssp CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTC
T ss_pred CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHH
Confidence 34699998888899999999999999974 466 35776666543
No 11
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=86.17 E-value=0.24 Score=34.99 Aligned_cols=42 Identities=24% Similarity=0.428 Sum_probs=33.4
Q ss_pred CCCCcccccCCeeEEeccCcccccccCCCCccCCCCCCCCCcceeeccc
Q 026133 54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI 102 (243)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iHsan~ls~~HqR~~l~g~ 102 (243)
...|+.|+ ++..+||..|...+|..|...-| +.|..+++..+
T Consensus 18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea 59 (72)
T 2csv_A 18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA 59 (72)
T ss_dssp CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHH
Confidence 45799995 77899999999999999976555 46777776643
No 12
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=81.45 E-value=1 Score=29.84 Aligned_cols=41 Identities=22% Similarity=0.502 Sum_probs=30.8
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hcccCcccccCcccceeccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~rH~RvpL~~~ 50 (243)
..|..-+ .+-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 50 (53)
T 2did_A 9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP 50 (53)
T ss_dssp CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence 4566665 57789999999999999975 445 56777777544
No 13
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.38 E-value=0.24 Score=33.91 Aligned_cols=31 Identities=32% Similarity=0.547 Sum_probs=25.6
Q ss_pred CCCCcccccCCeeEEeccCcccccccCCC-Ccc
Q 026133 54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH 85 (243)
Q Consensus 54 ~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~-~iH 85 (243)
...|..|+ ++..+||..|...+|..|.. .-|
T Consensus 18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence 44699995 67899999999999999985 444
No 14
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=80.23 E-value=0.38 Score=35.03 Aligned_cols=43 Identities=21% Similarity=0.502 Sum_probs=34.9
Q ss_pred CCCCccccc---CCeeEEeccCcccccccCCCCccCCCCCCCCCcc
Q 026133 54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96 (243)
Q Consensus 54 ~p~Cd~C~~---~pA~v~C~~D~a~LC~~CD~~iHsan~ls~~HqR 96 (243)
...|++|.. .+|...|..+.+.||..|-...|......++|+-
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 456999986 5689999999999999998777877666667764
No 15
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.25 E-value=1.7 Score=29.64 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=30.0
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hcccCcccccCcccceeccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~rH~RvpL~~~ 50 (243)
..|..-+ .+-.+||..|...+|..|.. .-| +.|..++|.++
T Consensus 15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea 56 (59)
T 2yrg_A 15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP 56 (59)
T ss_dssp SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence 3566555 46789999999999999975 444 46777777544
No 16
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=75.72 E-value=1.8 Score=28.17 Aligned_cols=41 Identities=24% Similarity=0.638 Sum_probs=30.7
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCcccceecc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC 49 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~RvpL~~ 49 (243)
..|..-...+-.+||..|...+|..|-..-| +.|..++|.+
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e 47 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED 47 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence 4566664556789999999999999976545 4677777754
No 17
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=70.36 E-value=2.9 Score=29.92 Aligned_cols=41 Identities=27% Similarity=0.503 Sum_probs=30.3
Q ss_pred cccccCCCCeEEEecccccccchhhch-hcccCcccccCcccceeccc
Q 026133 4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~rH~RvpL~~~ 50 (243)
.|..-+..+-.+||..|...+|..|-. .-| +.|.-++|.++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea 61 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR 61 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHH
Confidence 465554456789999999999999976 455 45777777544
No 18
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=68.90 E-value=3.2 Score=26.76 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=25.4
Q ss_pred ccccCCCCeEEEecccccccchhhc-hhcccCcccccCccccee
Q 026133 5 CDVCEKAPATVICCADEAALCAKCD-VEVHAANKLASKHQRLLL 47 (243)
Q Consensus 5 Cd~C~~apA~vyC~aD~A~LC~~CD-~~vHsaN~La~rH~RvpL 47 (243)
|..=++.+-.+||..|...+|..|- ..-|. .|..+||
T Consensus 9 C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l 46 (48)
T 3ddt_A 9 CKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPL 46 (48)
T ss_dssp CSSSTTSBCCEEETTTTEEECHHHHHHSTTT------TSCEEEC
T ss_pred CCCCCCccccEEcCCCCeeEcccccCCCcCC------CCcEEeC
Confidence 4433334577999999999999996 34564 4555555
No 19
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=68.77 E-value=2.2 Score=28.91 Aligned_cols=42 Identities=24% Similarity=0.469 Sum_probs=31.0
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hcccCcccccCcccceeccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHsaN~La~rH~RvpL~~~ 50 (243)
..|..-...+-.+||..|...+|..|-. .-| +.|..++|.++
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~a 51 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQSV 51 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTTC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHHH
Confidence 3566664567789999999999999975 356 35777777554
No 20
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=68.68 E-value=1.7 Score=27.18 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=23.4
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHs 34 (243)
..|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 4 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H~ 35 (42)
T 1fre_A 4 EKCSEHD-ERLKLYCKDDGTLSCVICRDSLKHA 35 (42)
T ss_dssp CCCCSSC-SSCCCCCCSSSSSSCCTTSSCSSCT
T ss_pred ccchhhC-CeeeEEeCCCCeEEeccCCCCCCCC
Confidence 3466655 56789999999999999975 4453
No 21
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.10 E-value=3.7 Score=27.77 Aligned_cols=31 Identities=26% Similarity=0.553 Sum_probs=23.9
Q ss_pred ccccccCCCCeEEEecccccccchhhch-hccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHA 34 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~-~vHs 34 (243)
..|..-+ .+-.+||..|...+|..|.. .-|.
T Consensus 19 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH~ 50 (57)
T 2egm_A 19 GICPKHQ-EALKLFCEVDEEAICVVCRESRSHK 50 (57)
T ss_dssp SBCTTTC-CBCCEEETTTTEEECHHHHHSHHHH
T ss_pred CcChhhC-ceeeEEcCCCCcEEecccCCCCCCC
Confidence 3466664 57789999999999999985 4554
No 22
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=59.34 E-value=3.8 Score=32.21 Aligned_cols=80 Identities=18% Similarity=0.366 Sum_probs=48.3
Q ss_pred CccccccCCCCeEEEecccc-cccchhhc--hhcccCcccccCcccceeccccCCCCCCcccccCCeeEEec-cCccccc
Q 026133 2 KIQCDVCEKAPATVICCADE-AALCAKCD--VEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV-EDRALFC 77 (243)
Q Consensus 2 ~~~Cd~C~~apA~vyC~aD~-A~LC~~CD--~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~-~D~a~LC 77 (243)
...|..|+.....++-..+. ..||..|. .+.|..|....+-.+.. .........|..|+......|-. .+...||
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~-~~~~~~~~~C~~C~t~~tp~WRr~~~g~~lC 83 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRL-SAARRAGTSCANCQTTTTTLWRRNANGDPVC 83 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCC-CCCCCTTCCCTTTCCSCCSSCEECTTSCEEC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccc-cccccccccCCCcCCCCcceeEECCCCCCcc
Confidence 46799999876666665554 47999999 45666665433322221 11122355699998877544432 2235788
Q ss_pred ccCCC
Q 026133 78 KDCDE 82 (243)
Q Consensus 78 ~~CD~ 82 (243)
-.|..
T Consensus 84 NaCgl 88 (115)
T 4hc9_A 84 NACGL 88 (115)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 88863
No 23
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=59.30 E-value=6.4 Score=28.56 Aligned_cols=46 Identities=28% Similarity=0.399 Sum_probs=36.9
Q ss_pred ccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCcccceeccc
Q 026133 3 IQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~rH~RvpL~~~ 50 (243)
+-|-+|... |++.|..+ .-.+|.+|=++.|. ..-.+.|+-+++...
T Consensus 9 pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~ 55 (67)
T 2d8v_A 9 PWCCICNED-ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPR 55 (67)
T ss_dssp SSCTTTCSC-CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCS
T ss_pred CeeEEeCCC-CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCC
Confidence 458899964 99999987 56779999999996 445689999988543
No 24
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=58.31 E-value=5.4 Score=38.85 Aligned_cols=74 Identities=19% Similarity=0.420 Sum_probs=21.2
Q ss_pred cccccCCCCeEEEecccccccchhhchhcccCcccccCcccceeccc---------------------cCCCCCCccccc
Q 026133 4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCL---------------------SNKLPPCDICQE 62 (243)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~RvpL~~~---------------------~~~~p~Cd~C~~ 62 (243)
.|+.|+.--.. ..-..+-|..|...+|. +.|..++.... -.....|+.|+.
T Consensus 50 ~C~~C~~~i~g---~~~qg~~C~~C~~~~H~-----~C~~~v~~~c~~~~~~~~~~~~~~~h~~~~~~~~~~~~C~~C~~ 121 (674)
T 3pfq_A 50 FCSHCTDFIWG---FGKQGFQCQVCSFVVHK-----RCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGS 121 (674)
T ss_dssp ------------------------------------------------------------CCCCCEECCSSCCCCSSSCS
T ss_pred ccccccccccc---cCCceeECCCCCCCcCh-----hhcCcCcccCCCcccccccccccCCcceeecCCCCCCCCCcccc
Confidence 47888764322 23456667777777775 23333332110 012457999977
Q ss_pred CCeeEEeccCcccccccCCCCccCCC
Q 026133 63 KAAFIFCVEDRALFCKDCDEPIHSPG 88 (243)
Q Consensus 63 ~pA~v~C~~D~a~LC~~CD~~iHsan 88 (243)
.- ++..-.-+-|..|...+|..|
T Consensus 122 ~l---~g~~~qg~~C~~C~~~~H~~C 144 (674)
T 3pfq_A 122 LL---YGLIHQGMKCDTCMMNVHKRC 144 (674)
T ss_dssp CC---BBSSSCEECCSSSCCCBCSST
T ss_pred cc---chhhcCccccccCCcchhhhh
Confidence 63 233334566777777777666
No 25
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=56.45 E-value=4.7 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.498 Sum_probs=30.0
Q ss_pred ccccccCCCCeEEEecccccccchhhchhcccCcccccCcccceeccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCL 50 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~RvpL~~~ 50 (243)
..|..-+ .+-.+||..|...+|..|-..-| +.|..++|.++
T Consensus 19 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea 59 (72)
T 2csv_A 19 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEA 59 (72)
T ss_dssp CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHH
T ss_pred CcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHHH
Confidence 3566654 67789999999999999976445 46766776543
No 26
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.07 E-value=5.4 Score=28.92 Aligned_cols=45 Identities=31% Similarity=0.452 Sum_probs=35.4
Q ss_pred CCCCCcccccCCeeEEeccC-cccccccCCCCccCCCCCCCCCcceee
Q 026133 53 KLPPCDICQEKAAFIFCVED-RALFCKDCDEPIHSPGSLSANHQRFLA 99 (243)
Q Consensus 53 ~~p~Cd~C~~~pA~v~C~~D-~a~LC~~CD~~iHsan~ls~~HqR~~l 99 (243)
.++-|-+|.+. |.+.|..+ .-++|..|-...|.. .--+.|+-++.
T Consensus 7 e~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~H~~-~d~r~Hk~v~y 52 (67)
T 2d8v_A 7 GLPWCCICNED-ATLRCAGCDGDLYCARCFREGHDN-FDLKEHQTSPY 52 (67)
T ss_dssp CCSSCTTTCSC-CCEEETTTTSEEECSSHHHHHTTT-SSTTTCCEECC
T ss_pred CCCeeEEeCCC-CeEEecCCCCceehHHHHHHHccc-hhhhccceeec
Confidence 36789999998 89999877 779999999999953 33457766654
No 27
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=46.33 E-value=5.1 Score=28.13 Aligned_cols=32 Identities=28% Similarity=0.669 Sum_probs=24.7
Q ss_pred cccccCCCC---eEEEecccccccchhhchhcccC
Q 026133 4 QCDVCEKAP---ATVICCADEAALCAKCDVEVHAA 35 (243)
Q Consensus 4 ~Cd~C~~ap---A~vyC~aD~A~LC~~CD~~vHsa 35 (243)
.|-.|...- .+..|..+...+|.+||.-+|..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 377777643 23449999999999999999963
No 28
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=41.61 E-value=8.8 Score=38.72 Aligned_cols=81 Identities=22% Similarity=0.456 Sum_probs=53.4
Q ss_pred ccccccCCC--CeEEEecccccccchhhchh--cccCcccc-cCcccceecccc---CCCCCCcccccCCeeEEe----c
Q 026133 3 IQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKLA-SKHQRLLLQCLS---NKLPPCDICQEKAAFIFC----V 70 (243)
Q Consensus 3 ~~Cd~C~~a--pA~vyC~aD~A~LC~~CD~~--vHsaN~La-~rH~RvpL~~~~---~~~p~Cd~C~~~pA~v~C----~ 70 (243)
..|.+|+-. .+++.|..+.-.+|..=+.. -|--|-|. +||.-|-|-+-+ .....|-.|+....+... .
T Consensus 12 ~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~~~ 91 (802)
T 2xzl_A 12 NSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVSAK 91 (802)
T ss_dssp CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC--
T ss_pred hhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeeecc
Confidence 569999985 67788999999999854422 33334333 588888875433 235669999999866543 2
Q ss_pred cC--ccccccc-CCCC
Q 026133 71 ED--RALFCKD-CDEP 83 (243)
Q Consensus 71 ~D--~a~LC~~-CD~~ 83 (243)
.+ ...||+. |...
T Consensus 92 ~~~~~~~~cr~~c~~~ 107 (802)
T 2xzl_A 92 SEAVVVLLCRIPCAQT 107 (802)
T ss_dssp ----CEEEETTTTTTC
T ss_pred CCceEEEEeCCcccch
Confidence 22 3577884 8543
No 29
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=39.93 E-value=21 Score=27.77 Aligned_cols=10 Identities=30% Similarity=1.086 Sum_probs=5.8
Q ss_pred CCccccccCC
Q 026133 1 MKIQCDVCEK 10 (243)
Q Consensus 1 M~~~Cd~C~~ 10 (243)
|...|-.|+.
T Consensus 31 M~~~CP~Cq~ 40 (101)
T 2jne_A 31 MELHCPQCQH 40 (101)
T ss_dssp CCCBCSSSCS
T ss_pred ccccCccCCC
Confidence 5556666664
No 30
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.16 E-value=13 Score=34.86 Aligned_cols=70 Identities=20% Similarity=0.369 Sum_probs=45.0
Q ss_pred CccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCcccceeccccCCCCCCcccccCCeeEEec--cCcccccc
Q 026133 2 KIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (243)
Q Consensus 2 ~~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~--~D~a~LC~ 78 (243)
+..|-.|++.. .++..-- ...+|..|-...+..+..- ........|..|.+..-.+.|. .+...||.
T Consensus 50 e~~C~~CG~~~-~~~~HPl~~v~lC~~Ck~~y~~~~f~~---------D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~ 119 (386)
T 2pv0_B 50 EDICICCGSLQ-VHTQHPLFEGGICAPCKDKFLDALFLY---------DDDGYQSYCSICCSGETLLICGNPDCTRCYCF 119 (386)
T ss_dssp GGSBTTTCCSC-CCSBCSSBSSBCCHHHHHHHHTTTTCB---------CSSSSBCSCTTTCCCSSCEECCSTTCCCEECH
T ss_pred cceeCCCCCcC-ccccCCCcCcchhhHHHHHHhccCccc---------CCCCCcccceEcCCCCeEEEeCCCCCCcchHH
Confidence 45788888752 2333322 5778888877777654311 1111233599999888788888 77788998
Q ss_pred cCC
Q 026133 79 DCD 81 (243)
Q Consensus 79 ~CD 81 (243)
.|-
T Consensus 120 ~Ci 122 (386)
T 2pv0_B 120 ECV 122 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 31
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=37.46 E-value=51 Score=24.06 Aligned_cols=30 Identities=27% Similarity=0.685 Sum_probs=22.2
Q ss_pred CCcccccCCee---EEeccCcc----cccccCCCCcc
Q 026133 56 PCDICQEKAAF---IFCVEDRA----LFCKDCDEPIH 85 (243)
Q Consensus 56 ~Cd~C~~~pA~---v~C~~D~a----~LC~~CD~~iH 85 (243)
.|+.|+..+.. +.|..+.. -||..|-....
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 49999987643 56877765 59999986543
No 32
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=33.68 E-value=13 Score=25.00 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=22.7
Q ss_pred CccccccCCC-CeEEEecccccc-cchhhchh
Q 026133 2 KIQCDVCEKA-PATVICCADEAA-LCAKCDVE 31 (243)
Q Consensus 2 ~~~Cd~C~~a-pA~vyC~aD~A~-LC~~CD~~ 31 (243)
...|+.|.+. ...+.|..+..+ ||..|-..
T Consensus 6 ~~~Cd~C~~~ig~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVETRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEESSEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCcceEEcCCCCCchhHHHHHhC
Confidence 4679999975 245779988776 99999654
No 33
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=33.57 E-value=14 Score=37.22 Aligned_cols=80 Identities=21% Similarity=0.463 Sum_probs=52.4
Q ss_pred ccccccCCC--CeEEEecccccccchhhchh--cccCcccc-cCcccceeccccC---CCCCCcccccCCeeEE----ec
Q 026133 3 IQCDVCEKA--PATVICCADEAALCAKCDVE--VHAANKLA-SKHQRLLLQCLSN---KLPPCDICQEKAAFIF----CV 70 (243)
Q Consensus 3 ~~Cd~C~~a--pA~vyC~aD~A~LC~~CD~~--vHsaN~La-~rH~RvpL~~~~~---~~p~Cd~C~~~pA~v~----C~ 70 (243)
..|.+|+-. ..++.|..+.-.+|..-... -|--|-|. +||.-|-|.+-+. ....|-.|+....+.. ..
T Consensus 7 ~~c~~c~~~~~~~~~~~~~~~~~fcn~~~~~~~shi~~h~~~~~~~~~~~~~~~~~~~~~~ec~~c~~~n~f~lg~~~~~ 86 (800)
T 2wjy_A 7 HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAK 86 (800)
T ss_dssp TSCTTTCCCCGGGEEEETTTTEEEESCCTTSSSCHHHHHHHHHTCCCEEECTTSTTCSCBCCCTTTCCCCTTTCEEEC--
T ss_pred hhccccCCCCCCeEEEcCCCCCccccCCCCCcccHHHHHHHHccCceEecCCCCCCCCceEEEeccCCCceeeeeceecc
Confidence 569999985 66788999999999854422 23333333 5888888855432 3566999999986544 33
Q ss_pred cC--cccccc-cCCC
Q 026133 71 ED--RALFCK-DCDE 82 (243)
Q Consensus 71 ~D--~a~LC~-~CD~ 82 (243)
.+ ...||+ .|..
T Consensus 87 ~~~~~~~~~~~~~~~ 101 (800)
T 2wjy_A 87 ADSVVVLLCRQPCAS 101 (800)
T ss_dssp ---CCEECCTTTTSS
T ss_pred cCceEEEEecCcccc
Confidence 33 347888 4743
No 34
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.73 E-value=58 Score=24.17 Aligned_cols=60 Identities=25% Similarity=0.577 Sum_probs=33.4
Q ss_pred CCccccccCCCCeEEEecccccccchhhchhcccCcccccCcccceeccccCCCCCCcccccCCeeEE-eccCccccccc
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIF-CVEDRALFCKD 79 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~~~pA~v~-C~~D~a~LC~~ 79 (243)
|...|-.|+..... ...-+.|..|+..+-. .. .|+.|+.....+- |.+ ..+||..
T Consensus 1 M~~~CP~C~~~l~~----~~~~~~C~~C~~~~~~----------~a---------fCPeCgq~Le~lkACGA-~~yFC~~ 56 (81)
T 2jrp_A 1 MEITCPVCHHALER----NGDTAHCETCAKDFSL----------QA---------LCPDCRQPLQVLKACGA-VDYFCQN 56 (81)
T ss_dssp CCCCCSSSCSCCEE----CSSEEECTTTCCEEEE----------EE---------ECSSSCSCCCEEEETTE-EEECCTT
T ss_pred CCCCCCCCCCcccc----CCCceECccccccCCC----------cc---------cCcchhhHHHHHHhcCC-cCeeecc
Confidence 77888888865432 2334457777753211 11 2777776654421 221 2578888
Q ss_pred CCCCc
Q 026133 80 CDEPI 84 (243)
Q Consensus 80 CD~~i 84 (243)
|..-+
T Consensus 57 C~~Li 61 (81)
T 2jrp_A 57 GHGLI 61 (81)
T ss_dssp TTCCC
T ss_pred CCCEe
Confidence 86544
No 35
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=31.55 E-value=56 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.615 Sum_probs=23.8
Q ss_pred CccccccCCCC---eEEEeccccc----ccchhhchhcc
Q 026133 2 KIQCDVCEKAP---ATVICCADEA----ALCAKCDVEVH 33 (243)
Q Consensus 2 ~~~Cd~C~~ap---A~vyC~aD~A----~LC~~CD~~vH 33 (243)
.+.||.|+..+ -.+.|..+.. -||..|-..-+
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~ 59 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLH 59 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCcc
Confidence 46899999765 3477988765 59999976544
No 36
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=31.39 E-value=13 Score=26.81 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=25.5
Q ss_pred CCccccccCCCCeEEEecccccccchhhchh
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~ 31 (243)
|++.|..|+ +.-++|=.+-...+|..|...
T Consensus 6 m~VKCp~C~-niq~VFShA~tvV~C~~Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCE-HEQVIFDHPSTIVKCIICGRT 35 (66)
T ss_dssp EEEECTTTC-CEEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCC-CceEEEecCceEEEcccCCCE
Confidence 678899999 478899999999999999743
No 37
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=30.02 E-value=21 Score=25.02 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=17.2
Q ss_pred ccccccCCCCeEEEecccccccchhhchhccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHs 34 (243)
..|.+|++. +...+|..|+...|.
T Consensus 13 ~~C~vC~~~--------~~ll~Cd~C~~~~H~ 36 (66)
T 2lri_C 13 ARCGVCGDG--------TDVLRCTHCAAAFHW 36 (66)
T ss_dssp CCCTTTSCC--------TTCEECSSSCCEECH
T ss_pred CCcCCCCCC--------CeEEECCCCCCceec
Confidence 458888853 446678888888885
No 38
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=29.21 E-value=18 Score=27.11 Aligned_cols=29 Identities=28% Similarity=0.638 Sum_probs=24.6
Q ss_pred CCccccccCCCCeEEEecccccccchhhch
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (243)
|++.|..|+ +.-+||=.+-...+|..|..
T Consensus 33 m~VkCp~C~-~~q~VFSha~t~V~C~~Cg~ 61 (82)
T 3u5c_b 33 LDVKCPGCL-NITTVFSHAQTAVTCESCST 61 (82)
T ss_dssp EEEECTTSC-SCEEEESBCSSCCCCSSSCC
T ss_pred EEEECCCCC-CeeEEEecCCeEEEccccCC
Confidence 678899999 47888999999999999974
No 39
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.67 E-value=12 Score=22.75 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=22.8
Q ss_pred ccccchhhchhcccCcccccCcccceeccccCCCCCCcccc
Q 026133 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (243)
Q Consensus 21 ~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~ 61 (243)
..+-|..|+...-... .+.+|+|+-..+ +...|++|+
T Consensus 11 k~~~C~~C~k~f~~~~-~L~~H~~~H~~~---k~~~C~~C~ 47 (48)
T 2epr_A 11 KQVACEICGKIFRDVY-HLNRHKLSHSGE---KPYSSGPSS 47 (48)
T ss_dssp CSEEETTTTEEESSHH-HHHHHGGGSCSC---CCCCSCCCC
T ss_pred cCeeCCCCCcccCCHH-HHHHHHHhcCCC---CCccCCCCC
Confidence 4566888886655433 457888876432 234577775
No 40
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.34 E-value=31 Score=22.31 Aligned_cols=26 Identities=35% Similarity=0.819 Sum_probs=18.2
Q ss_pred cccccCCCCeEEEecccccccchhhchhccc
Q 026133 4 QCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (243)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHs 34 (243)
.|.+|++.. ..+.-.+|..|+...|.
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~ 27 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHL 27 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECH
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCc
Confidence 588888643 23456778899988775
No 41
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.22 E-value=15 Score=26.19 Aligned_cols=30 Identities=17% Similarity=0.506 Sum_probs=24.8
Q ss_pred CCccccccCCCCeEEEecccccccchhhchh
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDVE 31 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~~ 31 (243)
|++.|..|++ .-++|=++-...+|..|...
T Consensus 14 m~VkCp~C~~-~q~VFSha~t~V~C~~Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGN-EQIVFSHPATKVRCLICGAT 43 (63)
T ss_dssp EEEECSSSCC-EEEEESSCSSCEECSSSCCE
T ss_pred EEEECCCCCC-eeEEEecCCeEEEccCcCCE
Confidence 6788999994 77888888899999999743
No 42
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=27.99 E-value=39 Score=24.86 Aligned_cols=42 Identities=24% Similarity=0.507 Sum_probs=27.1
Q ss_pred CcccceeccccCCCCCCcccccCCeeEEeccCcccccccCCCCccCCC
Q 026133 41 KHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPG 88 (243)
Q Consensus 41 rH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~~D~a~LC~~CD~~iHsan 88 (243)
.|.+.+|.-.......|+.|+... ....+.|..|+..+|..+
T Consensus 34 ~Hp~H~L~L~~~~~~~C~~C~~~~------~~~~Y~C~~C~f~lH~~C 75 (89)
T 1v5n_A 34 LHEEHELELTRVQVYTCDKCEEEG------TIWSYHCDECDFDLHAKC 75 (89)
T ss_dssp TTTTSCEEEECCSSCCCTTTSCCC------CSCEEECTTTCCCCCHHH
T ss_pred CCCCCccEEeeCCCeEeCCCCCcC------CCcEEEcCCCCCeEcHHh
Confidence 343444543333345799999874 346688889998888655
No 43
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.42 E-value=16 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.735 Sum_probs=24.4
Q ss_pred CCccccccCCCCeEEEecccccccchhhch
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (243)
|++.|..|+ +.-+||=.+-....|..|..
T Consensus 31 m~VkCp~C~-n~q~VFShA~t~V~C~~Cg~ 59 (81)
T 2xzm_6 31 MDVKCAQCQ-NIQMIFSNAQSTIICEKCSA 59 (81)
T ss_dssp EEEECSSSC-CEEEEETTCSSCEECSSSCC
T ss_pred EEeECCCCC-CeeEEEecCccEEEccCCCC
Confidence 678899999 47888888888899999974
No 44
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.02 E-value=56 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=22.3
Q ss_pred ccccccCCCC---eEEEecccc-cccchhhchhc
Q 026133 3 IQCDVCEKAP---ATVICCADE-AALCAKCDVEV 32 (243)
Q Consensus 3 ~~Cd~C~~ap---A~vyC~aD~-A~LC~~CD~~v 32 (243)
+.||.|+..+ -.+.|..+. --||..|-..-
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g 45 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRG 45 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCC
Confidence 5799999764 447788775 45999997654
No 45
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.12 E-value=18 Score=27.36 Aligned_cols=29 Identities=24% Similarity=0.650 Sum_probs=23.9
Q ss_pred CCccccccCCCCeEEEecccccccchhhch
Q 026133 1 MKIQCDVCEKAPATVICCADEAALCAKCDV 30 (243)
Q Consensus 1 M~~~Cd~C~~apA~vyC~aD~A~LC~~CD~ 30 (243)
|++.|..|+ +.-+||=.+-...+|..|..
T Consensus 35 m~VkCp~C~-~~~~VFShA~t~V~C~~Cgt 63 (86)
T 3iz6_X 35 MDVKCQGCF-NITTVFSHSQTVVVCPGCQT 63 (86)
T ss_dssp EEEECTTTC-CEEEEETTCSSCCCCSSSCC
T ss_pred eEEECCCCC-CeeEEEecCCcEEEccCCCC
Confidence 677899998 47788888888889988873
No 46
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.88 E-value=64 Score=21.87 Aligned_cols=24 Identities=29% Similarity=0.670 Sum_probs=17.5
Q ss_pred ccccccCCCCeEEEecccccccchhhchhccc
Q 026133 3 IQCDVCEKAPATVICCADEAALCAKCDVEVHA 34 (243)
Q Consensus 3 ~~Cd~C~~apA~vyC~aD~A~LC~~CD~~vHs 34 (243)
..|.+|+.. +.-.+|..|+...|.
T Consensus 10 ~~C~vC~~~--------g~ll~Cd~C~~~fH~ 33 (61)
T 1mm2_A 10 EFCRVCKDG--------GELLCCDTCPSSYHI 33 (61)
T ss_dssp SSCTTTCCC--------SSCBCCSSSCCCBCS
T ss_pred CcCCCCCCC--------CCEEEcCCCCHHHcc
Confidence 457788752 456778899988885
No 47
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.34 E-value=24 Score=24.44 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=14.8
Q ss_pred EEEecccc----cccchhhchhcc
Q 026133 14 TVICCADE----AALCAKCDVEVH 33 (243)
Q Consensus 14 ~vyC~aD~----A~LC~~CD~~vH 33 (243)
.+||..|= +..|..|+..|-
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~ 26 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE 26 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC
T ss_pred CCcchHHHHhHhCCcCccccCEec
Confidence 46788773 457999998776
No 48
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=23.04 E-value=49 Score=27.45 Aligned_cols=70 Identities=16% Similarity=0.313 Sum_probs=40.9
Q ss_pred CccccccCCCCeEEEeccc-ccccchhhchhcccCcccccCcccceeccccCCCCCCcccccCCeeEEec--cCcccccc
Q 026133 2 KIQCDVCEKAPATVICCAD-EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCV--EDRALFCK 78 (243)
Q Consensus 2 ~~~Cd~C~~apA~vyC~aD-~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~~~pA~v~C~--~D~a~LC~ 78 (243)
...|-.|++. .+++...- ...+|..|-...+..... . ..-.....|..|.+....+.|. .+...||.
T Consensus 36 e~~Ct~CG~~-~~~~~HPlf~v~lC~~Ck~~y~e~~f~--------~-DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~FC~ 105 (159)
T 3a1b_A 36 EDICISCGSL-NVTLEHPLFVGGMCQNCKNCFLECAYQ--------Y-DDDGYQSYCTICCGGREVLMCGNNNCCRCFCV 105 (159)
T ss_dssp GGSBTTTCCS-CCCEECSSBSSEECHHHHHHHHHHTTC--------B-CTTSSBSSCTTTSCCSEEEECSSTTTCCEEEH
T ss_pred cCcccCCCCc-CccccCCCccchhhHHHHHHHhhcccc--------c-CCCCCcceeeEecCCCeEEeeCCCCCCCchhH
Confidence 3456677653 22233322 466677776555543211 0 1111233599999888777788 68889999
Q ss_pred cCC
Q 026133 79 DCD 81 (243)
Q Consensus 79 ~CD 81 (243)
.|-
T Consensus 106 ~CI 108 (159)
T 3a1b_A 106 ECV 108 (159)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
No 49
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.20 E-value=36 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.541 Sum_probs=24.3
Q ss_pred cccccCCCCeEEEecccccccch-hhchhccc
Q 026133 4 QCDVCEKAPATVICCADEAALCA-KCDVEVHA 34 (243)
Q Consensus 4 ~Cd~C~~apA~vyC~aD~A~LC~-~CD~~vHs 34 (243)
+|++|+. ++...|..+.+..|. .|= +.|.
T Consensus 14 ~C~vC~~-~~kY~CPrC~~~yCSl~C~-k~Hk 43 (56)
T 2yqq_A 14 VCVICLE-KPKYRCPACRVPYCSVVCF-RKHK 43 (56)
T ss_dssp CCTTTCS-CCSEECTTTCCEESSHHHH-HHHH
T ss_pred ccCcCcC-CCeeeCCCCCCCeeCHHHH-HHHH
Confidence 5999999 999999999999997 775 4453
No 50
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=21.74 E-value=54 Score=24.78 Aligned_cols=28 Identities=29% Similarity=0.636 Sum_probs=20.8
Q ss_pred ccccccCCCC---eEEEecccc-cccchhhch
Q 026133 3 IQCDVCEKAP---ATVICCADE-AALCAKCDV 30 (243)
Q Consensus 3 ~~Cd~C~~ap---A~vyC~aD~-A~LC~~CD~ 30 (243)
+.||.|+..+ ..+.|..+. --||..|-.
T Consensus 32 v~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~ 63 (98)
T 2dip_A 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECFD 63 (98)
T ss_dssp CCCSSSCCSSCCSCEEEESSSSSCEEEHHHHH
T ss_pred CCCcCCCCCCcccCeEECCCCCCccHHHHHHc
Confidence 6899999754 446688774 559999953
No 51
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.18 E-value=33 Score=20.20 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=21.9
Q ss_pred cccccchhhchhcccCcccccCcccceeccccCCCCCCccc
Q 026133 20 DEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60 (243)
Q Consensus 20 D~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C 60 (243)
...+-|..|+...-... .+.+|+|+-..+ +...|+.|
T Consensus 10 ~~~~~C~~C~k~f~~~~-~L~~H~~~H~~~---k~~~C~~C 46 (46)
T 2ytg_A 10 EKPFKCGECGKSYNQRV-HLTQHQRVHTGE---KPSGPSSG 46 (46)
T ss_dssp CCSEECTTTCCEESSSH-HHHTTGGGGSSC---CSSCSCCC
T ss_pred CCCeECCCCCcccCCHH-HHHHHHHHcCCC---CCCCCCCC
Confidence 34567888887765543 457888775432 22346655
No 52
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.03 E-value=13 Score=22.16 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=22.6
Q ss_pred ccccchhhchhcccCcccccCcccceeccccCCCCCCcccc
Q 026133 21 EAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQ 61 (243)
Q Consensus 21 ~A~LC~~CD~~vHsaN~La~rH~RvpL~~~~~~~p~Cd~C~ 61 (243)
..+-|..|+...-... .+.+|+|+-..+. ...|+.|+
T Consensus 9 k~~~C~~C~k~f~~~~-~l~~H~~~H~~~~---~~~C~~cg 45 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKD-RMSYHVRSHDGSV---GKSGPSSG 45 (45)
T ss_dssp CSSEETTTTEECSCHH-HHHHHHHHHSCCC---CCCCCCCC
T ss_pred CCCcCCCCCcccCCHH-HHHHHHHHccCCC---CCCCcCCC
Confidence 4567888887765433 3578888754322 33476663
Done!