Query 026134
Match_columns 243
No_of_seqs 130 out of 519
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 04:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 2.2E-32 4.9E-37 224.0 13.9 106 134-243 9-114 (135)
2 COG1259 Uncharacterized conser 100.0 4.1E-31 8.9E-36 222.9 13.9 109 132-243 12-120 (151)
3 PF12386 Peptidase_C71: Pseudo 67.2 19 0.00042 30.6 6.1 43 177-219 57-100 (142)
4 PF14305 ATPgrasp_TupA: TupA-l 61.4 16 0.00035 32.9 5.0 48 171-218 171-220 (239)
5 PF13670 PepSY_2: Peptidase pr 61.1 47 0.001 24.6 6.8 50 177-230 27-76 (83)
6 COG0403 GcvP Glycine cleavage 30.2 62 0.0014 32.5 3.8 47 159-205 148-202 (450)
7 PF14292 SusE: SusE outer memb 29.4 2.8E+02 0.0062 21.8 7.6 94 90-194 14-109 (122)
8 COG3212 Predicted membrane pro 27.1 3.4E+02 0.0073 23.0 7.3 56 177-234 81-138 (144)
9 COG2936 Predicted acyl esteras 22.9 1.1E+02 0.0023 31.7 4.1 31 111-146 22-52 (563)
10 PF13793 Pribosyltran_N: N-ter 22.7 2E+02 0.0042 23.2 4.9 38 178-215 7-44 (116)
11 PRK13263 ureE urease accessory 22.2 3.3E+02 0.0071 24.7 6.6 18 183-200 119-136 (206)
12 PF12392 DUF3656: Collagenase 22.0 1.6E+02 0.0034 23.4 4.2 34 175-209 62-98 (122)
13 smart00306 HintN Hint (Hedgeho 20.5 1.3E+02 0.0029 21.7 3.3 22 107-128 52-73 (100)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=2.2e-32 Score=223.96 Aligned_cols=106 Identities=28% Similarity=0.469 Sum_probs=89.8
Q ss_pred CCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhccCCCCCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEE
Q 026134 134 PDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLY 213 (243)
Q Consensus 134 d~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~ 213 (243)
++..++|+++|++++++ +.|||||+..||.+|+.++.+.+++||+|||||.++++++|.++++|+|++++||+|||+|+
T Consensus 9 ~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~ 87 (135)
T PF02577_consen 9 DEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLV 87 (135)
T ss_dssp ETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEE
T ss_pred cCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEE
Confidence 33446789999999977 69999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCccceEEEEecChHHHHHHHHhhCCC
Q 026134 214 LTKVGNETECVSFDLRPSDAINIAVRCKWN 243 (243)
Q Consensus 214 L~~~g~e~e~~~iDARPSDAIALAlR~~aP 243 (243)
+++++ +++++|+||||||+||+|+++|
T Consensus 88 l~~~~---~~~~id~RpSDAiaLAl~~~~P 114 (135)
T PF02577_consen 88 LRQGG---EEIEIDARPSDAIALALRFGAP 114 (135)
T ss_dssp EEETT---TEEEEEE-HHHHHHHHHHHT--
T ss_pred EecCC---EEEEEECcHhHHHHHHHHhCCC
Confidence 98776 6899999999999999999998
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=222.88 Aligned_cols=109 Identities=28% Similarity=0.458 Sum_probs=100.4
Q ss_pred CCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhccCCCCCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEE
Q 026134 132 HLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQ 211 (243)
Q Consensus 132 ~Ld~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyAr 211 (243)
++++-.+.|++++...+++++.|||||+..||.+|+.++++..++||+|||||.++++.+|.+|++|+|++++|+||||+
T Consensus 12 ~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~ 91 (151)
T COG1259 12 FFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYAT 91 (151)
T ss_pred EEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEE
Confidence 44556677877777777777899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCccceEEEEecChHHHHHHHHhhCCC
Q 026134 212 LYLTKVGNETECVSFDLRPSDAINIAVRCKWN 243 (243)
Q Consensus 212 L~L~~~g~e~e~~~iDARPSDAIALAlR~~aP 243 (243)
|++++++ ..+.+||||||||+||+|.|+|
T Consensus 92 L~~~~~~---~~~~iDaRPSDaI~LAlr~~~P 120 (151)
T COG1259 92 LILEQDD---GKIQIDARPSDAIALALRVGAP 120 (151)
T ss_pred EEEEcCC---ceEEEecccchHHHHHHHhCCC
Confidence 9999987 4699999999999999999998
No 3
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=67.16 E-value=19 Score=30.64 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=33.5
Q ss_pred CCchHHHHHHHHHHcCCEEeEEEEEeE-ECCEEEEEEEEEecCc
Q 026134 177 RPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVGN 219 (243)
Q Consensus 177 RPlTHDLl~~iLe~lG~~V~~V~It~~-~dgtFyArL~L~~~g~ 219 (243)
--..-+|+..+++.||+.|.-+.+--. .+|+.|..+.|+-.+.
T Consensus 57 CtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~~ 100 (142)
T PF12386_consen 57 CTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKHK 100 (142)
T ss_pred chhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecce
Confidence 344578999999999998766555332 6999999999987663
No 4
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=61.43 E-value=16 Score=32.85 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=39.7
Q ss_pred ccCCCCCCchHHHHHHHHHHcCCEEeEEEE--EeEECCEEEEEEEEEecC
Q 026134 171 RNVQIARPTLYQVVKEMIEKMGYEVRLVRV--TKRVHEAYFAQLYLTKVG 218 (243)
Q Consensus 171 ~g~~~~RPlTHDLl~~iLe~lG~~V~~V~I--t~~~dgtFyArL~L~~~g 218 (243)
.....+||-..+=|.++.+.|.-...-||| +...+++||..|.+..++
T Consensus 171 ~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~ 220 (239)
T PF14305_consen 171 PDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGA 220 (239)
T ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCC
Confidence 445779999999999999999765555555 778899999999998765
No 5
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=61.14 E-value=47 Score=24.64 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEecCccceEEEEecCh
Q 026134 177 RPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (243)
Q Consensus 177 RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~~g~e~e~~~iDARP 230 (243)
.-++.+-+...++..|++|.+|.+++ +|.|-.+..- ++|. .-++.+|.+-
T Consensus 27 ~~~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~-~dG~-~~ev~vD~~t 76 (83)
T PF13670_consen 27 DWLSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARD-KDGK-KVEVYVDPAT 76 (83)
T ss_pred ccCCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEE-CCCC-EEEEEEcCCC
Confidence 33568889999999999999999864 7788888444 3332 2456666543
No 6
>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]
Probab=30.17 E-value=62 Score=32.52 Aligned_cols=47 Identities=15% Similarity=0.256 Sum_probs=39.3
Q ss_pred cchhHHHHHHHhccC--------CCCCCchHHHHHHHHHHcCCEEeEEEEEeEEC
Q 026134 159 LEMPSVLLMAAMRNV--------QIARPTLYQVVKEMIEKMGYEVRLVRVTKRVH 205 (243)
Q Consensus 159 geaEAiaI~~aL~g~--------~~~RPlTHDLl~~iLe~lG~~V~~V~It~~~d 205 (243)
..+||+.++.+..+. +...|.|-|+++.-.+-+|++|..+.++++.+
T Consensus 148 AaAEAm~ma~r~~k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~~~~d~~~ 202 (450)
T COG0403 148 AAAEAMLMAKRVTKKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVVDADDLDD 202 (450)
T ss_pred HHHHHHHHHHHhhcCcCceEEecCCCCHHHHHHHHhhcccCceEEEEeccchhhh
Confidence 357888877777662 34689999999999999999999999998875
No 7
>PF14292 SusE: SusE outer membrane protein
Probab=29.41 E-value=2.8e+02 Score=21.83 Aligned_cols=94 Identities=14% Similarity=0.161 Sum_probs=54.1
Q ss_pred ccccccceeEEEEEeeecCceeEEEe--ccCceeEEEecCCCCCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHH
Q 026134 90 DEDFVNSSVVEAVEVKSGADGFMIKM--RDGRHLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLM 167 (243)
Q Consensus 90 d~d~~~~~v~ea~~~~s~~~~~~~~m--~~g~~l~~~~~~~~~g~Ld~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~ 167 (243)
|+++..-..-++.++..-+++-.|.+ ....-+++.|+.+..|.- +..-.+.|.+-..+++ ..=|+.+.....
T Consensus 14 D~~~~~~~~~~~~~l~~~~~~~~i~L~~~~~~a~tftW~~~~~~~~-~a~v~Y~lq~~~~~~~-F~~~~~~~~~~~---- 87 (122)
T PF14292_consen 14 DDDNPTLNPPSAFELNLPASGSSIVLDEASDNAVTFTWTAADYGGP-DAPVTYTLQFDKKGND-FSSPVEIVTTDN---- 87 (122)
T ss_pred CCcccccCCCCceeEEccCCcceEEecccCCceEEEEEECCccCCC-CCceEEEEEEeccCCC-ccCcEEEEeecC----
Confidence 33443333333444444444434433 355678999998887751 1222456666543433 344666654432
Q ss_pred HHhccCCCCCCchHHHHHHHHHHcCCE
Q 026134 168 AAMRNVQIARPTLYQVVKEMIEKMGYE 194 (243)
Q Consensus 168 ~aL~g~~~~RPlTHDLl~~iLe~lG~~ 194 (243)
.......||.-|.+++..+|+.
T Consensus 88 -----~~~s~~~t~~eLN~~l~~~g~~ 109 (122)
T PF14292_consen 88 -----GSTSVSITVKELNSILLKLGLE 109 (122)
T ss_pred -----cceeEEecHHHHHHHHHHcCCC
Confidence 2456778999999999999974
No 8
>COG3212 Predicted membrane protein [Function unknown]
Probab=27.13 E-value=3.4e+02 Score=22.99 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=41.3
Q ss_pred CCchH-HHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEec-CccceEEEEecChHHHH
Q 026134 177 RPTLY-QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKV-GNETECVSFDLRPSDAI 234 (243)
Q Consensus 177 RPlTH-DLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~~-g~e~e~~~iDARPSDAI 234 (243)
.+.+. .++.-.++..+.+|..+.+.. .+|.++=++-+..+ +.+ .++.|||+..+-|
T Consensus 81 ~iis~~ea~~iAl~~~~G~v~dieLe~-~~g~~vYevei~~~d~~e-~ev~iDA~TG~Il 138 (144)
T COG3212 81 TIISLEEAKEIALKRVPGKVDDIELEE-DNGRLVYEVEIVKDDGQE-YEVEIDAKTGKIL 138 (144)
T ss_pred cccCHHHHHHHHHHHCCCceeEEEEec-cCCEEEEEEEEEeCCCcE-EEEEEecCCCCcc
Confidence 44443 455556677777999999986 77999999999875 533 7899999876543
No 9
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=22.90 E-value=1.1e+02 Score=31.68 Aligned_cols=31 Identities=32% Similarity=0.588 Sum_probs=26.3
Q ss_pred eEEEeccCceeEEEecCCCCCCCCCCCCCcEEEEEe
Q 026134 111 FMIKMRDGRHLRCVHNNPQGGHLPDYAPHPAIVLKM 146 (243)
Q Consensus 111 ~~~~m~~g~~l~~~~~~~~~g~Ld~~a~~PvIVLk~ 146 (243)
.+|+||||..|....--|.++. +.|+++.+.
T Consensus 22 v~V~MRDGvrL~~dIy~Pa~~g-----~~Pvll~~~ 52 (563)
T COG2936 22 VMVPMRDGVRLAADIYRPAGAG-----PLPVLLSRT 52 (563)
T ss_pred eeEEecCCeEEEEEEEccCCCC-----CCceeEEee
Confidence 4899999999998888888774 788998887
No 10
>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B ....
Probab=22.67 E-value=2e+02 Score=23.21 Aligned_cols=38 Identities=8% Similarity=0.166 Sum_probs=28.6
Q ss_pred CchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEE
Q 026134 178 PTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLT 215 (243)
Q Consensus 178 PlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~ 215 (243)
+...+|=..+.+.||.++..+++..+.||-.|.++--.
T Consensus 7 ~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~ 44 (116)
T PF13793_consen 7 SSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPES 44 (116)
T ss_dssp SSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS-
T ss_pred CCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEeccc
Confidence 34578889999999999999999999999998888443
No 11
>PRK13263 ureE urease accessory protein UreE; Provisional
Probab=22.25 E-value=3.3e+02 Score=24.65 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.4
Q ss_pred HHHHHHHHcCCEEeEEEE
Q 026134 183 VVKEMIEKMGYEVRLVRV 200 (243)
Q Consensus 183 Ll~~iLe~lG~~V~~V~I 200 (243)
+|.+||+.+|+.+++++.
T Consensus 119 VLedmL~~LG~~v~~~~a 136 (206)
T PRK13263 119 VLADMLRRLGVTVERASA 136 (206)
T ss_pred HHHHHHHHCCCceEEeEe
Confidence 899999999999988876
No 12
>PF12392 DUF3656: Collagenase ; InterPro: IPR020988 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This domain is found in a number of proteins belonging to the MEROPS peptidase family U32. Peptidase family U32 contains endopeptidases, including collagenase, from bacteria.
Probab=22.04 E-value=1.6e+02 Score=23.38 Aligned_cols=34 Identities=15% Similarity=0.310 Sum_probs=28.3
Q ss_pred CCCCchHHHHHHHHHHcCC---EEeEEEEEeEECCEEE
Q 026134 175 IARPTLYQVVKEMIEKMGY---EVRLVRVTKRVHEAYF 209 (243)
Q Consensus 175 ~~RPlTHDLl~~iLe~lG~---~V~~V~It~~~dgtFy 209 (243)
..||++.+-+.+-|.++|. .+..+.|+ +.++.|.
T Consensus 62 ~~~p~~~e~i~~ql~KlG~T~F~~~~i~i~-~~~~lFl 98 (122)
T PF12392_consen 62 KKRPLDEERIRKQLSKLGNTPFELENIEID-LDEGLFL 98 (122)
T ss_pred CCCccCHHHHHHHHHhhCCCcEEEEEEEEE-cCCCEEE
Confidence 4699999999999999984 68888888 6777774
No 13
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=20.54 E-value=1.3e+02 Score=21.72 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.0
Q ss_pred cCceeEEEeccCceeEEEecCC
Q 026134 107 GADGFMIKMRDGRHLRCVHNNP 128 (243)
Q Consensus 107 ~~~~~~~~m~~g~~l~~~~~~~ 128 (243)
..+-+.|+.++|+.++|..+++
T Consensus 52 ~~~~~~i~~~~g~~i~~T~~H~ 73 (100)
T smart00306 52 EKKFYRIKTENGREITLTPDHL 73 (100)
T ss_pred ceeEEEEEECCCCEEEECCCCE
Confidence 3455567889999999985544
Done!