Query 026134
Match_columns 243
No_of_seqs 130 out of 519
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 06:22:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026134.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026134hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 5.6E-37 1.9E-41 259.8 15.1 114 129-243 19-138 (164)
2 4exr_A Putative lipoprotein; Y 25.4 2.8E+02 0.0094 22.6 8.3 48 181-230 117-164 (174)
3 2e5i_A Heterogeneous nuclear r 24.9 90 0.0031 24.1 4.5 38 176-216 34-71 (124)
4 3zzy_A Polypyrimidine tract-bi 24.8 1.3E+02 0.0043 23.6 5.4 39 176-216 37-75 (130)
5 2pt7_G HP1451, hypothetical pr 19.6 1.3E+02 0.0044 24.5 4.6 34 180-213 7-40 (152)
6 3fbs_A Oxidoreductase; structu 13.9 4.8E+02 0.016 20.7 6.7 109 102-215 80-208 (297)
7 3vot_A L-amino acid ligase, BL 12.7 2.1E+02 0.0071 25.4 4.5 41 181-232 253-293 (425)
8 4fvg_A Stomatin; mixed alpha-b 12.6 1.9E+02 0.0066 22.0 3.7 24 181-204 95-118 (133)
9 1sjr_A Polypyrimidine tract-bi 12.2 3E+02 0.01 22.4 4.9 39 176-216 55-93 (164)
10 2x8n_A CV0863; non-uniform sam 12.1 2.2E+02 0.0076 21.9 3.9 28 99-126 27-54 (111)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=5.6e-37 Score=259.81 Aligned_cols=114 Identities=24% Similarity=0.351 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCcEEEEEecCCCceEEEEEEcchhHHHHHHHhccCCCCCCchHHHHHHHHHHcCCEEeEEEEEeEECCEE
Q 026134 129 QGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAY 208 (243)
Q Consensus 129 ~~g~Ld~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtF 208 (243)
.+.++|+++++|+|||++++++ +.|||||+..||.+|+.++++.+++||+|||||.++++++|+++++|+|++++||||
T Consensus 19 ~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~I~~l~dgtf 97 (164)
T 1vjl_A 19 KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVIIHSLKDNTF 97 (164)
T ss_dssp EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEEEEEEETTEE
T ss_pred EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEeECCEE
Confidence 4789999999999999999887 699999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEE------ecCccceEEEEecChHHHHHHHHhhCCC
Q 026134 209 FAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKWN 243 (243)
Q Consensus 209 yArL~L~------~~g~e~e~~~iDARPSDAIALAlR~~aP 243 (243)
||+|+|. +++++.+.+++|||||||||||+|+++|
T Consensus 98 yA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~P 138 (164)
T 1vjl_A 98 YATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAP 138 (164)
T ss_dssp EEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCC
T ss_pred EEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCC
Confidence 9999999 6553346899999999999999999998
No 2
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=25.41 E-value=2.8e+02 Score=22.63 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEecCccceEEEEecCh
Q 026134 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (243)
Q Consensus 181 HDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~~g~e~e~~~iDARP 230 (243)
-+.+.-.+...+..|..+.+.. .+|.++=.+.+..++.+ .++.|||.-
T Consensus 117 ~~A~~~Al~~~~G~v~e~eLd~-d~G~~vYevei~~~~~~-~ev~IDA~t 164 (174)
T 4exr_A 117 QQAMEIALKEQNGIVKEWSLDK-DLDVTFYKIRIDKDKNE-YDIKVDSKK 164 (174)
T ss_dssp HHHHHHHHHHSCSEEEEEEEEE-ETTEEEEEEEEEETTEE-EEEEEETTT
T ss_pred HHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEECCEE-EEEEEECCC
Confidence 3455556667788899999864 79988888888776533 678899864
No 3
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.93 E-value=90 Score=24.08 Aligned_cols=38 Identities=16% Similarity=0.159 Sum_probs=29.6
Q ss_pred CCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEe
Q 026134 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (243)
Q Consensus 176 ~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~ 216 (243)
+.+.|.|.|.+++..+|- |.+|+|.. +.| |+|-|.+..
T Consensus 34 ~~~vt~~~L~~~Fs~yG~-V~~v~i~~-~~G-f~aFVef~~ 71 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGK-VQRIVIFK-RNG-IQAMVEFES 71 (124)
T ss_dssp CSCCCHHHHHHHHTTTSC-EEEEEEEE-SSS-EEEEEEESS
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEe-CCC-CEEEEEECC
Confidence 457788999999999985 88888865 344 678887754
No 4
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=24.76 E-value=1.3e+02 Score=23.62 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEe
Q 026134 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (243)
Q Consensus 176 ~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~ 216 (243)
+.|.|.|.|.+++...|- |.+|+|.. +..-|+|-+.+..
T Consensus 37 ~~~vte~~L~~lFs~yG~-V~~V~i~~-~~~gfqAFVef~~ 75 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYAD 75 (130)
T ss_dssp CSCCCHHHHHHHHTTSSC-EEEEEEEE-ETTEEEEEEEESC
T ss_pred CCCCCHHHHHHHHhCcCC-EEEEEEEc-CCCCcEEEEEECC
Confidence 567899999999999985 88888875 4566888888865
No 5
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=19.58 E-value=1.3e+02 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEE
Q 026134 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLY 213 (243)
Q Consensus 180 THDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~ 213 (243)
..+.|.++++.||.++..+.+....+++++-.|.
T Consensus 7 ~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ 40 (152)
T 2pt7_G 7 IKQELKDLFSHLPYKINKVEVSLYEPGVLLIDID 40 (152)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEe
Confidence 4678999999999988777887778998877764
No 6
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=13.86 E-value=4.8e+02 Score=20.71 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=55.4
Q ss_pred EEeeecCceeEEEeccCceeEEEecCCCCCCCC---------CCCCCcEEEEEe-----cCCCceEEEEEEcchhHHHHH
Q 026134 102 VEVKSGADGFMIKMRDGRHLRCVHNNPQGGHLP---------DYAPHPAIVLKM-----EDGTGLLLPIIVLEMPSVLLM 167 (243)
Q Consensus 102 ~~~~s~~~~~~~~m~~g~~l~~~~~~~~~g~Ld---------~~a~~PvIVLk~-----edg~~r~LPI~IgeaEAiaI~ 167 (243)
+.+....+++.++..+|+.++.-+.---.|+-+ .+....+..... ..++ .+-|+=+...+..++
T Consensus 80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~v~vvG~G~~~~e~a 157 (297)
T 3fbs_A 80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQG--KIGVIAASPMAIHHA 157 (297)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTC--EEEEECCSTTHHHHH
T ss_pred EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCC--EEEEEecCccHHHHH
Confidence 334455567888888887666554322233211 111111111111 1122 233333555566666
Q ss_pred HHhccC------CCCCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEE
Q 026134 168 AAMRNV------QIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLT 215 (243)
Q Consensus 168 ~aL~g~------~~~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~ 215 (243)
..+... ....+...+.+.+.++..|+++..-.|.++..+. .+.+.
T Consensus 158 ~~l~~~g~v~~v~~~~~~~~~~~~~~l~~~gv~i~~~~v~~i~~~~---~v~~~ 208 (297)
T 3fbs_A 158 LMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIAGHA---DVVLA 208 (297)
T ss_dssp HHGGGTSEEEEECTTTCCCCHHHHHHHHHTTCEEECSCEEEEETTE---EEEET
T ss_pred HHhhhcCcEEEEECCCCCCCHHHHHHHHHCCcEEEcceeeeeecCC---eEEeC
Confidence 666431 1112234456778889999988766677776654 45553
No 7
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=12.66 E-value=2.1e+02 Score=25.35 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=30.2
Q ss_pred HHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEecCccceEEEEecChHH
Q 026134 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSD 232 (243)
Q Consensus 181 HDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~~g~e~e~~~iDARPSD 232 (243)
.++...+++++|+ ..|.++..+.+..+| +-..+++..||+.
T Consensus 253 ~~~~~~~~~alg~----------~~G~~~ve~~~~~dG-~~~~iEiN~R~gG 293 (425)
T 3vot_A 253 VKEVTGAVSALGI----------HQGPAHTELRLDKDG-TPYVIEVGARIGG 293 (425)
T ss_dssp HHHHHHHHHHTTC----------CSEEEEEEEEECTTC-CEEEEEEESSCGG
T ss_pred HHHHHHHHHHcCC----------CcceEEEEEEEEeCC-cEEEEEEecCCCC
Confidence 4566778888875 368888888887654 2367899999954
No 8
>4fvg_A Stomatin; mixed alpha-beta fold, membrane scaffold, membrane protein; 1.80A {Mus musculus} PDB: 4fvj_A 4fvf_A
Probab=12.55 E-value=1.9e+02 Score=22.01 Aligned_cols=24 Identities=13% Similarity=0.236 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCEEeEEEEEeEE
Q 026134 181 YQVVKEMIEKMGYEVRLVRVTKRV 204 (243)
Q Consensus 181 HDLl~~iLe~lG~~V~~V~It~~~ 204 (243)
.+.+.+.++.+|++|..|+|.++.
T Consensus 95 ~~~l~~~~~~~GI~V~~V~ikdi~ 118 (133)
T 4fvg_A 95 QSTLDDATDDWGIKVERVEIKDVK 118 (133)
T ss_dssp HHHHHHHHGGGTEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCEEEEEEEEEecC
Confidence 345556677889999999998754
No 9
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=12.17 E-value=3e+02 Score=22.42 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCchHHHHHHHHHHcCCEEeEEEEEeEECCEEEEEEEEEe
Q 026134 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (243)
Q Consensus 176 ~RPlTHDLl~~iLe~lG~~V~~V~It~~~dgtFyArL~L~~ 216 (243)
+-+.|.|.|.+++..+|- |++|.|.. +..-+||-|.+..
T Consensus 55 ~~~vted~L~~~Fs~fG~-V~~V~i~~-k~~rgfAFVeF~d 93 (164)
T 1sjr_A 55 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYAD 93 (164)
T ss_dssp CSCCCHHHHHHHHHHHSC-EEEEEEEE-SSSCEEEEEEESC
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEe-CCCCCEEEEEECC
Confidence 456888999999999975 99999854 2345788888854
No 10
>2x8n_A CV0863; non-uniform sampling, multidimensional decomposition, abacus, fragment monte carlo, structural genomics; NMR {Chromobacterium violaceum atcc 12472}
Probab=12.05 E-value=2.2e+02 Score=21.91 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=22.2
Q ss_pred EEEEEeeecCceeEEEeccCceeEEEec
Q 026134 99 VEAVEVKSGADGFMIKMRDGRHLRCVHN 126 (243)
Q Consensus 99 ~ea~~~~s~~~~~~~~m~~g~~l~~~~~ 126 (243)
...|.+.+..+++++.+.||+.+.+-..
T Consensus 27 a~~V~~~~~~~~l~v~L~dGr~l~~Pl~ 54 (111)
T 2x8n_A 27 LRSVQYRSEEGVIVFILANDRELKFRPD 54 (111)
T ss_dssp EEEEEEETTTTEEEEEETTCCEEEECTT
T ss_pred eEEEEEEccCCEEEEEECCCCEEEeeHH
Confidence 3455555699999999999999988644
Done!