Query 026135
Match_columns 243
No_of_seqs 197 out of 1227
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 06:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026135.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026135hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.5 4.4E-14 1.5E-18 103.6 6.3 55 2-59 14-68 (72)
2 2dim_A Cell division cycle 5-l 99.3 8.8E-13 3E-17 95.8 4.9 54 2-57 14-68 (70)
3 2din_A Cell division cycle 5-l 99.3 1.1E-12 3.8E-17 94.3 5.1 49 2-53 14-62 (66)
4 2d9a_A B-MYB, MYB-related prot 99.3 9.1E-13 3.1E-17 93.0 3.7 46 2-49 13-59 (60)
5 1ity_A TRF1; helix-turn-helix, 99.3 3.7E-12 1.3E-16 92.4 5.5 50 2-53 15-67 (69)
6 1gv2_A C-MYB, MYB proto-oncoge 99.3 3.1E-12 1.1E-16 98.6 5.2 46 1-48 60-105 (105)
7 1guu_A C-MYB, MYB proto-oncoge 99.3 3.7E-12 1.3E-16 87.4 4.9 44 2-46 8-51 (52)
8 3zqc_A MYB3; transcription-DNA 99.3 5.4E-12 1.8E-16 101.4 6.4 57 2-60 59-115 (131)
9 2llk_A Cyclin-D-binding MYB-li 99.3 2E-12 6.7E-17 96.4 3.3 39 2-43 28-66 (73)
10 1gvd_A MYB proto-oncogene prot 99.3 4.2E-12 1.5E-16 87.2 4.6 44 2-46 8-51 (52)
11 2k9n_A MYB24; R2R3 domain, DNA 99.2 7.3E-12 2.5E-16 97.5 5.0 47 2-50 58-104 (107)
12 1w0t_A Telomeric repeat bindin 99.2 9.4E-12 3.2E-16 86.0 4.9 44 2-47 7-53 (53)
13 1h8a_C AMV V-MYB, MYB transfor 99.2 7.5E-12 2.6E-16 99.9 4.6 45 2-48 84-128 (128)
14 2yum_A ZZZ3 protein, zinc fing 99.2 1.1E-11 3.8E-16 90.9 4.9 47 2-50 13-65 (75)
15 2ltp_A Nuclear receptor corepr 98.8 1.7E-12 5.9E-17 99.1 0.0 46 2-49 21-66 (89)
16 1x41_A Transcriptional adaptor 99.2 1.6E-11 5.5E-16 87.1 4.3 43 2-46 13-56 (60)
17 1ign_A Protein (RAP1); RAP1,ye 99.1 1.9E-11 6.4E-16 109.3 4.4 46 2-49 13-64 (246)
18 3osg_A MYB21; transcription-DN 99.1 4.5E-11 1.5E-15 95.6 5.6 45 2-48 67-111 (126)
19 3sjm_A Telomeric repeat-bindin 99.1 1.3E-10 4.6E-15 83.9 5.2 46 2-48 16-63 (64)
20 2elk_A SPCC24B10.08C protein; 99.0 1.7E-10 5.9E-15 81.4 4.5 41 2-44 14-56 (58)
21 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2.3E-10 7.7E-15 85.2 4.6 42 2-45 23-68 (73)
22 1gv2_A C-MYB, MYB proto-oncoge 98.9 7.8E-10 2.7E-14 85.1 4.1 47 2-49 9-55 (105)
23 3osg_A MYB21; transcription-DN 98.9 9.7E-10 3.3E-14 87.8 4.7 54 2-57 16-69 (126)
24 2cjj_A Radialis; plant develop 98.9 1.7E-09 5.8E-14 83.8 5.8 51 2-54 13-68 (93)
25 1h8a_C AMV V-MYB, MYB transfor 98.9 1E-09 3.4E-14 87.5 4.0 51 2-53 32-82 (128)
26 2ckx_A NGTRF1, telomere bindin 98.9 2.9E-09 9.9E-14 80.9 6.2 46 2-48 5-54 (83)
27 1h89_C C-MYB, MYB proto-oncoge 98.9 1.5E-09 5.2E-14 89.3 4.4 49 2-51 63-111 (159)
28 2k9n_A MYB24; R2R3 domain, DNA 98.8 1.7E-09 6E-14 84.0 4.2 54 2-56 6-59 (107)
29 1x58_A Hypothetical protein 49 98.8 4E-09 1.4E-13 76.7 5.2 44 2-47 13-59 (62)
30 3zqc_A MYB3; transcription-DNA 98.8 3.9E-09 1.3E-13 84.6 4.2 57 2-59 7-63 (131)
31 2yus_A SWI/SNF-related matrix- 98.7 3.5E-09 1.2E-13 79.5 2.8 40 2-43 23-62 (79)
32 2juh_A Telomere binding protei 98.7 3.8E-08 1.3E-12 79.7 6.6 46 2-48 22-71 (121)
33 2aje_A Telomere repeat-binding 98.6 5.1E-08 1.8E-12 77.2 7.0 46 2-48 18-67 (105)
34 2roh_A RTBP1, telomere binding 98.5 1.6E-07 5.6E-12 76.1 6.4 46 2-48 36-85 (122)
35 2eqr_A N-COR1, N-COR, nuclear 98.4 1.7E-07 6E-12 66.6 4.6 42 2-45 17-58 (61)
36 1h89_C C-MYB, MYB proto-oncoge 98.4 2.8E-08 9.5E-13 81.7 -0.4 54 2-56 11-64 (159)
37 2cqq_A RSGI RUH-037, DNAJ homo 98.4 3.1E-07 1E-11 68.0 4.3 44 2-48 13-60 (72)
38 3hm5_A DNA methyltransferase 1 98.3 1.2E-06 4E-11 68.2 6.1 49 2-52 35-88 (93)
39 2iw5_B Protein corest, REST co 98.1 1.8E-06 6.1E-11 76.8 3.9 43 2-46 138-180 (235)
40 1fex_A TRF2-interacting telome 97.3 0.00025 8.4E-09 50.4 4.3 44 1-45 6-58 (59)
41 1ug2_A 2610100B20RIK gene prod 97.2 0.0003 1E-08 54.7 4.6 45 2-46 38-83 (95)
42 1wgx_A KIAA1903 protein; MYB D 97.2 0.00034 1.2E-08 52.0 4.4 44 2-45 13-58 (73)
43 2lr8_A CAsp8-associated protei 96.0 0.00014 4.9E-09 53.8 0.0 43 2-45 19-62 (70)
44 4iej_A DNA methyltransferase 1 96.6 0.0045 1.5E-07 48.1 6.1 49 2-52 35-88 (93)
45 4eef_G F-HB80.4, designed hema 95.3 0.004 1.4E-07 46.6 0.8 40 2-41 25-66 (74)
46 4a69_C Nuclear receptor corepr 95.0 0.032 1.1E-06 42.7 5.1 40 2-43 48-87 (94)
47 2yqk_A Arginine-glutamic acid 94.9 0.034 1.2E-06 39.4 4.6 40 2-43 14-54 (63)
48 1ign_A Protein (RAP1); RAP1,ye 94.3 0.045 1.5E-06 49.0 4.9 28 20-47 173-200 (246)
49 2crg_A Metastasis associated p 93.4 0.13 4.5E-06 37.1 5.2 40 2-43 13-53 (70)
50 2xag_B REST corepressor 1; ami 93.2 0.058 2E-06 52.3 3.9 43 2-46 385-427 (482)
51 2ebi_A DNA binding protein GT- 91.4 0.16 5.6E-06 37.3 3.6 48 2-49 9-68 (86)
52 3hug_A RNA polymerase sigma fa 76.4 3.9 0.00013 29.4 4.8 49 2-53 39-90 (92)
53 2o8x_A Probable RNA polymerase 67.9 7.4 0.00025 25.8 4.3 39 2-43 17-55 (70)
54 1ku3_A Sigma factor SIGA; heli 58.3 13 0.00045 25.3 4.2 40 2-44 12-55 (73)
55 4b4c_A Chromodomain-helicase-D 56.2 14 0.00048 30.5 4.8 44 2-46 12-59 (211)
56 1ofc_X ISWI protein; nuclear p 55.2 9.7 0.00033 34.8 3.9 44 2-46 217-275 (304)
57 2p7v_B Sigma-70, RNA polymeras 54.3 14 0.00047 24.9 3.7 41 2-45 7-51 (68)
58 2xag_B REST corepressor 1; ami 52.7 2.9 0.0001 40.5 0.0 40 2-43 194-233 (482)
59 1ofc_X ISWI protein; nuclear p 50.0 25 0.00086 32.0 5.8 44 3-47 116-159 (304)
60 3i4p_A Transcriptional regulat 49.0 16 0.00055 28.9 3.9 48 1-50 1-48 (162)
61 2lfw_A PHYR sigma-like domain; 45.4 21 0.00072 27.7 4.0 38 2-42 95-132 (157)
62 1x3u_A Transcriptional regulat 44.4 40 0.0014 22.7 4.9 38 3-44 19-56 (79)
63 2y9y_A Imitation switch protei 39.9 24 0.00083 33.1 4.0 48 2-50 233-295 (374)
64 1fse_A GERE; helix-turn-helix 38.6 43 0.0015 22.1 4.2 38 3-44 14-51 (74)
65 1je8_A Nitrate/nitrite respons 37.5 41 0.0014 23.6 4.2 38 3-44 24-61 (82)
66 3c57_A Two component transcrip 35.8 50 0.0017 23.8 4.5 43 3-50 30-72 (95)
67 2dbb_A Putative HTH-type trans 35.6 59 0.002 24.8 5.1 47 2-50 8-54 (151)
68 3ulq_B Transcriptional regulat 34.8 53 0.0018 23.8 4.5 39 4-46 33-71 (90)
69 3mzy_A RNA polymerase sigma-H 34.6 45 0.0015 24.7 4.2 37 3-43 112-148 (164)
70 3e7l_A Transcriptional regulat 34.2 29 0.00098 23.4 2.8 42 3-55 19-60 (63)
71 1xsv_A Hypothetical UPF0122 pr 33.3 67 0.0023 24.1 5.0 39 2-43 27-65 (113)
72 1tty_A Sigma-A, RNA polymerase 32.6 58 0.002 22.9 4.3 38 3-43 21-62 (87)
73 1i1g_A Transcriptional regulat 30.7 85 0.0029 23.4 5.2 48 1-50 2-49 (141)
74 2rnj_A Response regulator prot 30.3 53 0.0018 23.2 3.8 42 3-49 32-73 (91)
75 1irz_A ARR10-B; helix-turn-hel 29.8 74 0.0025 22.6 4.4 42 2-43 12-56 (64)
76 2lm1_A Lysine-specific demethy 29.6 83 0.0028 23.4 4.9 28 20-47 67-98 (107)
77 2jpc_A SSRB; DNA binding prote 28.9 93 0.0032 19.8 4.6 37 5-45 3-39 (61)
78 2e1c_A Putative HTH-type trans 28.9 60 0.0021 26.0 4.3 46 2-49 26-71 (171)
79 2li6_A SWI/SNF chromatin-remod 28.6 51 0.0017 25.2 3.6 27 20-46 72-98 (116)
80 2cyy_A Putative HTH-type trans 28.5 70 0.0024 24.5 4.5 48 1-50 5-52 (151)
81 2jrz_A Histone demethylase jar 27.2 77 0.0026 24.3 4.5 27 20-46 63-93 (117)
82 1tc3_C Protein (TC3 transposas 23.6 1.1E+02 0.0036 17.8 3.8 33 4-40 10-42 (51)
83 2pn6_A ST1022, 150AA long hypo 22.4 81 0.0028 23.9 3.8 48 1-50 1-48 (150)
84 1s7o_A Hypothetical UPF0122 pr 22.2 1.2E+02 0.0041 22.9 4.6 38 3-43 25-62 (113)
85 2yqf_A Ankyrin-1; death domain 21.6 99 0.0034 23.2 4.0 32 5-39 18-49 (111)
86 1wxp_A THO complex subunit 1; 21.5 1.1E+02 0.0037 23.0 4.3 31 5-38 18-48 (110)
87 1c20_A DEAD ringer protein; DN 20.4 1.3E+02 0.0043 23.3 4.5 28 20-47 75-107 (128)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=4.4e-14 Score=103.56 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR 59 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~r 59 (243)
+|||++|+++|.+||+ +|..||.+|||||+++||+||+.+++++++. ++++..+.
T Consensus 14 ~eEd~~l~~~~~~~G~--~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~s 68 (72)
T 2cu7_A 14 IEEKELFEQGLAKFGR--RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETPN 68 (72)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCSC
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCccc
Confidence 6999999999999999 9999999999999999999999999998877 77766543
No 2
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=8.8e-13 Score=95.83 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=51.1
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCC
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT 57 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t 57 (243)
+|||++|+++|..|| + +|..||.+|+|||+++|++||+.+|++.+....|++.+
T Consensus 14 ~eED~~L~~~v~~~G~~--~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 14 NTEDEILKAAVMKYGKN--QWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp HHHHHHHHHHHHHTCSS--CHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHCcC--CHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence 699999999999999 7 99999999999999999999999999999988888765
No 3
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=94.33 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=45.8
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGI 53 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~ 53 (243)
+|||++|+++|.++|+ +|..||. |+|||+++||+||+.++++.+....-
T Consensus 14 ~eED~~L~~~~~~~g~--~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~ 62 (66)
T 2din_A 14 REEEEKLLHLAKLMPT--QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG 62 (66)
T ss_dssp HHHHHHHHHHHHHCTT--CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHcCC--CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence 6999999999999999 9999999 99999999999999999999887543
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.31 E-value=9.1e-13 Score=92.99 Aligned_cols=46 Identities=15% Similarity=0.367 Sum_probs=43.1
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
+|||++|+++|.+|| + +|..||.+|||||+++||+||+.+|++.++
T Consensus 13 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 13 HEEDEQLRALVRQFGQQ--DWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp HHHHHHHHHHHHHTCTT--CHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred HHHHHHHHHHHHHhCCC--CHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 699999999999999 7 999999999999999999999999887653
No 5
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.28 E-value=3.7e-12 Score=92.41 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCC--CCChHHHHHHHHHHHHhhhhhCCC
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRKLLNRGI 53 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrkl~~~~~ 53 (243)
+|||++|+++|..|| + +|+.||..|+ |||+++||+||+.++++.+.....
T Consensus 15 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 15 WEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp HHHHHHHHHHHHHHCSS--CHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred HHHHHHHHHHHHHHCCC--cHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 699999999999999 7 9999999999 999999999999999998776544
No 6
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.27 E-value=3.1e-12 Score=98.64 Aligned_cols=46 Identities=39% Similarity=0.679 Sum_probs=41.5
Q ss_pred ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135 1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl 48 (243)
.+|||++|+++|.++|+ +|+.||++|||||+++|||||+.++++++
T Consensus 60 t~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~~~~~~~ 105 (105)
T 1gv2_A 60 TEEEDRIIYQAHKRLGN--RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105 (105)
T ss_dssp CHHHHHHHHHHHHHHSS--CHHHHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHHHhccC
Confidence 36999999999999999 99999999999999999999999998864
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.27 E-value=3.7e-12 Score=87.37 Aligned_cols=44 Identities=20% Similarity=0.465 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+|||++|+++|.++|+. +|..||.+|||||+++|++||+.+|++
T Consensus 8 ~eED~~L~~~v~~~G~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 8 REEDEKLKKLVEQNGTD-DWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 69999999999999963 899999999999999999999999864
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.26 E-value=5.4e-12 Score=101.42 Aligned_cols=57 Identities=32% Similarity=0.480 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRP 60 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~rp 60 (243)
+|||++|+++|.++|+ +|+.||++|||||+++|||||+.++++++.....+...-.|
T Consensus 59 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~p 115 (131)
T 3zqc_A 59 PEEDETIFRNYLKLGS--KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115 (131)
T ss_dssp HHHHHHHHHHHHHSCS--CHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCCCCC
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCcccccCc
Confidence 6999999999999999 99999999999999999999999999998876655544444
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=96.38 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+|||++|+++|.++|+ +|+.||+.| |||+++|||||+.+
T Consensus 28 ~EED~~L~~l~~~~G~--kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 28 PEEIEKLKELRIKHGN--DWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp HHHHHHHHHHHHHHSS--CHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHh-CCCHHHHHHHHHHH
Confidence 7999999999999999 999999999 99999999999864
No 10
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.25 E-value=4.2e-12 Score=87.19 Aligned_cols=44 Identities=25% Similarity=0.498 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+|||++|+++|..+|.. +|..||..|+|||+++||+||+.+|++
T Consensus 8 ~eED~~L~~~v~~~G~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 8 KEEDQRLIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHCcC-hHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 69999999999999962 599999999999999999999998864
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.22 E-value=7.3e-12 Score=97.47 Aligned_cols=47 Identities=23% Similarity=0.372 Sum_probs=44.4
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
+|||++|+++|.+||+ +|+.||++|||||+++|||||+.++++..+.
T Consensus 58 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 58 PEEDMLLDQKYAEYGP--KWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCc--CHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 6999999999999999 9999999999999999999999999887654
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.22 E-value=9.4e-12 Score=86.02 Aligned_cols=44 Identities=23% Similarity=0.215 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCC--CCChHHHHHHHHHHHHhh
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRK 47 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrk 47 (243)
+|||++|+++|..+| + +|..||..|+ |||+++|++||..+++.+
T Consensus 7 ~eEd~~L~~~v~~~G~~--~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 7 WEEDKNLRSGVRKYGEG--NWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 699999999999999 6 9999999999 999999999999998753
No 13
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.21 E-value=7.5e-12 Score=99.93 Aligned_cols=45 Identities=38% Similarity=0.692 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|.++|+ +|+.||++|||||+++|||||+.++++++
T Consensus 84 ~eEd~~L~~~~~~~G~--~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~ 128 (128)
T 1h8a_C 84 EEEDRIIYQAHKRLGN--RWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128 (128)
T ss_dssp HHHHHHHHHHHHHHCS--CHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence 7999999999999999 99999999999999999999999998864
No 14
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=90.93 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHhC------CcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 2 KKMNSLSNSIASLVT------SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 2 ~EEDelLi~l~s~~G------n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
+|||++|++++..|| + +|..||.+|+|||+++|++||+.|+++.++.
T Consensus 13 ~eEd~~L~~~v~~~g~~~~~~~--~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 13 VEEQKKLEQLLIKYPPEEVESR--RWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp HHHHHHHHHHHHHSCCCSCHHH--HHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred HHHHHHHHHHHHHhCCCCCCcc--cHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 699999999999999 7 9999999999999999999999999887654
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=1.7e-12 Score=99.15 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
+|||++|+++|.+||+ +|+.||.+|||||+++|||||+.++++.-+
T Consensus 21 ~eEd~~l~~~~~~~G~--~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 21 EEEMGTAKKGLLEHGR--NWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 6899999999999999 999999999999999999999999988544
No 16
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=1.6e-11 Score=87.07 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+|||++|+++|..|| + +|..||++|||||+++|++||+.++..
T Consensus 13 ~eED~~L~~~v~~~G~~--~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 13 AQEEMALLEAVMDCGFG--NWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp HHHHHHHHHHHHHTCTT--CHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCcC--cHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 699999999999999 7 999999999999999999999988753
No 17
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.14 E-value=1.9e-11 Score=109.27 Aligned_cols=46 Identities=13% Similarity=0.274 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHhCCcCc------HHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSS------WSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~k------Ws~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
+|||++|+++|.++|+ + |..||++|||||+|+|||||+.+|++++.
T Consensus 13 ~EED~~Ile~v~k~Gn--~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 13 DEEDEFILDVVRKNPT--RRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp HHHHHHHHHHHHTSGG--GTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHHHHHHHHhCc--CccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 7999999999999998 6 99999999999999999999999999875
No 18
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.13 E-value=4.5e-11 Score=95.56 Aligned_cols=45 Identities=31% Similarity=0.419 Sum_probs=42.4
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|.+||+ +|+.||++|||||+++|||||+.++++.-
T Consensus 67 ~eEd~~L~~~v~~~G~--~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 67 AEEDALLVQKIQEYGR--QWAIIAKFFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp HHHHHHHHHHHHHHCS--CHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence 6999999999999999 99999999999999999999999887753
No 19
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.07 E-value=1.3e-10 Score=83.93 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCC--CCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLP--GRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp--GRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|..||.. +|..||+.+| |||+.+||+||..+++..+
T Consensus 16 ~eED~~L~~~V~~~G~~-~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 16 VEESEWVKAGVQKYGEG-NWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHccCCC-chHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 79999999999999932 8999999866 9999999999999887653
No 20
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.03 E-value=1.7e-10 Score=81.40 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHhC-CcCcHHHHhccCC-CCChHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVT-SKSSWSLIAGRLP-GRTDNEIKNYWNTHI 44 (243)
Q Consensus 2 ~EEDelLi~l~s~~G-n~~kWs~IA~~Lp-GRTdn~IKNrWn~~l 44 (243)
+|||++|++++.++| . +|..||++|+ |||+++|++||+.+.
T Consensus 14 ~eED~~L~~~v~~~G~~--~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 14 ADEELLLIDACETLGLG--NWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp HHHHHHHHHHHHHTTTT--CHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCcC--CHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 699999999999999 7 9999999999 999999999998763
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.01 E-value=2.3e-10 Score=85.16 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
+|||.+|++++..|| + +|..||.+|||||+++|++||+.+++
T Consensus 23 ~eEd~~L~~al~~~g~~~~~--rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 23 QNQQKLLELALQQYPRGSSD--CWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHHHHHHHHHHSCSSSHH--HHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCc--hHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 689999999999999 7 99999999999999999999998754
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.90 E-value=7.8e-10 Score=85.13 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
+|||++|++++..||.. +|..||..|||||+.+|+.||..++.+.+.
T Consensus 9 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 55 (105)
T 1gv2_A 9 KEEDQRVIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55 (105)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHTTSTTCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHhhhhcCCCHHHHHHHHHhccCCccc
Confidence 79999999999999962 699999999999999999999998765443
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.90 E-value=9.7e-10 Score=87.81 Aligned_cols=54 Identities=13% Similarity=0.351 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPAT 57 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t 57 (243)
+|||++|++++..||. +|..||..||||++.+|+.||..++.+.+....|++.+
T Consensus 16 ~eED~~L~~~v~~~G~--~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eE 69 (126)
T 3osg_A 16 PEEDEMLKRAVAQHGS--DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69 (126)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHH
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHH
Confidence 6999999999999999 99999999999999999999999987766655544443
No 24
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.90 E-value=1.7e-09 Score=83.85 Aligned_cols=51 Identities=20% Similarity=0.330 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHHhh-hhhCCCC
Q 026135 2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRK-LLNRGID 54 (243)
Q Consensus 2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrk-l~~~~~~ 54 (243)
.|||++|++++..|| + +|..||..|||||+++||+||+.+++.. ....|..
T Consensus 13 ~eEd~~L~~al~~~~~~~~~--rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~v 68 (93)
T 2cjj_A 13 AKENKAFERALAVYDKDTPD--RWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKV 68 (93)
T ss_dssp HHHHHHHHHHHHHSCTTCTT--HHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHcCCCCCc--hHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 689999999999996 6 9999999999999999999999988764 3334443
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.87 E-value=1e-09 Score=87.53 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGI 53 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~ 53 (243)
+|||++|++++..||.. +|..||..|||||+.+|++||+.++.+.+....|
T Consensus 32 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~W 82 (128)
T 1h8a_C 32 KEEDQRVIEHVQKYGPK-RWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 82 (128)
T ss_dssp HHHHHHHHHHHHHTCSC-CHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCC
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHhcCCcHHHHHHHHHHhcccccccccC
Confidence 69999999999999952 6999999999999999999999988765544333
No 26
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.87 E-value=2.9e-09 Score=80.92 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|..||.. +|+.|++. |+|||+++||+||+.+++..-
T Consensus 5 ~eEd~~L~~gv~k~G~g-~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 5 VAEVEALVEAVEHLGTG-RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 69999999999999954 99999996 899999999999999988664
No 27
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.85 E-value=1.5e-09 Score=89.29 Aligned_cols=49 Identities=22% Similarity=0.465 Sum_probs=42.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNR 51 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~ 51 (243)
+|||++|+++|..+|.. +|..||..|||||+++|++||+.++.+.+...
T Consensus 63 ~eEd~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 111 (159)
T 1h89_C 63 KEEDQRVIKLVQKYGPK-RWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111 (159)
T ss_dssp HHHHHHHHHHHHHHCSC-CHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCS
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHcCCCCHHHHHHHHHHHhCcccccc
Confidence 69999999999999952 69999999999999999999999886554433
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.84 E-value=1.7e-09 Score=83.96 Aligned_cols=54 Identities=17% Similarity=0.270 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPA 56 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~ 56 (243)
+|||++|++++..||.. +|..||..|||||+.+|+.||..++.+.+....|++.
T Consensus 6 ~eED~~L~~~v~~~g~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~e 59 (107)
T 2k9n_A 6 EEEDLKLQQLVMRYGAK-DWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPE 59 (107)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHH
Confidence 69999999999999942 8999999999999999999999998766554444433
No 29
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=4e-09 Score=76.67 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHh---ccCCCCChHHHHHHHHHHHHhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIA---GRLPGRTDNEIKNYWNTHIRRK 47 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA---~~LpGRTdn~IKNrWn~~lrrk 47 (243)
+|||+.|+++|.+||. +|+.|+ .+|+|||+-.||++|+.++|+.
T Consensus 13 ~EE~~~L~~gV~k~G~--~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 13 KEEVNYLFHGVKTMGN--HWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp HHHHHHHHHHHHHHCS--CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhH--hHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 7999999999999999 999999 6889999999999999987753
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.77 E-value=3.9e-09 Score=84.64 Aligned_cols=57 Identities=16% Similarity=0.388 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHR 59 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~t~r 59 (243)
+|||++|++++..+|.. +|..||..|||||+.+|+.||..++.+.+....|++.+..
T Consensus 7 ~eED~~L~~~v~~~g~~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~ 63 (131)
T 3zqc_A 7 EAEDDLIREYVKENGPQ-NWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDE 63 (131)
T ss_dssp HHHHHHHHHHHHHHCSC-CGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCcC-CHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHH
Confidence 79999999999999932 8999999999999999999999999887776666655443
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=79.55 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+|||++|++++.+||. +|..||.+|+|||+.+|++||..+
T Consensus 23 ~eEd~~Ll~~v~~~G~--~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 23 EQETLLLLEALEMYKD--DWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp HHHHHHHHHHHHHSSS--CHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHh
Confidence 6999999999999998 999999999999999999999765
No 32
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.65 E-value=3.8e-08 Score=79.71 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|..||.. +|+.|++. |+|||+++||+||+.+++...
T Consensus 22 ~EEd~~L~~gV~k~G~G-~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 22 VAEVEALVEAVEHLGTG-RWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp HHHHHHHHHHHHHHGGG-CHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-CHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence 69999999999999954 99999998 599999999999999998653
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.64 E-value=5.1e-08 Score=77.15 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccC----CCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRL----PGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L----pGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|..||.. +|+.|++.+ +|||+++||+||..+++...
T Consensus 18 ~EEd~~L~~gV~k~G~g-~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 18 VAEVEALVQAVEKLGTG-RWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp HHHHHHHHHHHHHHCSS-SHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 69999999999999954 999999965 89999999999999887653
No 34
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.50 E-value=1.6e-07 Score=76.09 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhcc----CCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGR----LPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~----LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||++|+++|..||.. +|+.|++. |+|||+.+||+||..+++..-
T Consensus 36 ~EEd~~L~~gV~k~G~g-~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 36 VAEVELLVEAVEHLGTG-RWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp HHHHHHHHHHHHHHSSS-CHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-ChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 69999999999999954 99999997 499999999999999987653
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.7e-07 Score=66.59 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
+||++++++++..+|. +|..||.+|||||..+|.++|+...+
T Consensus 17 ~eE~~~F~~~~~~~gk--~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 17 DHEKEIFKDKFIQHPK--NFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp HHHHHHHHHHHHHSTT--CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 7999999999999998 99999999999999999999987643
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.41 E-value=2.8e-08 Score=81.70 Aligned_cols=54 Identities=19% Similarity=0.402 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPA 56 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p~ 56 (243)
+|||++|++++..+|.. +|..||..||||+..+|+.||..++.+.+....|++.
T Consensus 11 ~eED~~L~~~v~~~g~~-~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~e 64 (159)
T 1h89_C 11 REEDEKLKKLVEQNGTD-DWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64 (159)
T ss_dssp ---------------------------------CHHHHHHTTTCTTCCCSCCCHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChH
Confidence 69999999999999942 8999999999999999999999988776554444443
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.36 E-value=3.1e-07 Score=67.97 Aligned_cols=44 Identities=16% Similarity=0.124 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHHhC----CcCcHHHHhccCCCCChHHHHHHHHHHHHhhh
Q 026135 2 KKMNSLSNSIASLVT----SKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKL 48 (243)
Q Consensus 2 ~EEDelLi~l~s~~G----n~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl 48 (243)
+|||.+|.+++..|+ + +|..||.+| |||..+|++||+.+.+...
T Consensus 13 ~eE~k~fe~al~~~p~~t~~--RW~~IA~~l-gRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 13 EEDLSQLTRSMVKFPGGTPG--RWEKIAHEL-GRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp HHHHHHHHHHHHHSCTTCTT--HHHHHHHHH-TSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCCCCc--HHHHHHHHh-CCCHHHHHHHHHHHHHhcC
Confidence 689999999999997 5 999999998 9999999999998866643
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.28 E-value=1.2e-06 Score=68.16 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccC-----CCCChHHHHHHHHHHHHhhhhhCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRL-----PGRTDNEIKNYWNTHIRRKLLNRG 52 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~L-----pGRTdn~IKNrWn~~lrrkl~~~~ 52 (243)
+||++.|++|+..||- +|..|+.++ ++||..+||+||+..+++.++.++
T Consensus 35 kEETd~Lf~L~~~fdl--RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 35 KAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC--CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999 999999999 589999999999999999888764
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.08 E-value=1.8e-06 Score=76.76 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+||++++++.+..||+ .|..||+.+++||.++||++|+.+.++
T Consensus 138 eEE~~lFleAl~kYGK--DW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 138 TEEQLLAVQAIRKYGR--DFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHHHHHHSS--CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999 999999999999999999999988766
No 40
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.29 E-value=0.00025 Score=50.37 Aligned_cols=44 Identities=11% Similarity=0.163 Sum_probs=39.3
Q ss_pred ChhhHHHHHHHHHHh--------CCcCcHHHHhc-cCCCCChHHHHHHHHHHHH
Q 026135 1 MKKMNSLSNSIASLV--------TSKSSWSLIAG-RLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 1 ~~EEDelLi~l~s~~--------Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~lr 45 (243)
.+|||++|++.+.++ ||. -|..++. .+|++|-.++|+||..+|+
T Consensus 6 T~edD~~L~~~v~~~~~~~~~~~Gn~-iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 6 TDADDVAILTYVKENARSPSSVTGNA-LWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CHHHHHHHHHHHHHTCCSTTTTTSSH-HHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhccccCCCccHH-HHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 369999999999999 863 6999999 8999999999999988764
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.23 E-value=0.0003 Score=54.73 Aligned_cols=45 Identities=11% Similarity=0.235 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHhCC-cCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTS-KSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn-~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
.|||..|+...++.|. ...|+.||+.|.+|+.++|+|||+.+|+=
T Consensus 38 Re~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 38 READRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp HHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 6899999999999994 22699999999999999999999987653
No 42
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.19 E-value=0.00034 Score=52.02 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhCC--cCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTS--KSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn--~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
+||+.+|.+....|+. ..+|..||..+||||..+|+.||..+++
T Consensus 13 ~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 13 EKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp HHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 5889999888888872 0179999999999999999999987633
No 43
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.96 E-value=0.00014 Score=53.81 Aligned_cols=43 Identities=7% Similarity=0.214 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHhCC-cCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTS-KSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn-~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
.|||..|+....+-|. ...|+.||..| +|+.++|++||..+++
T Consensus 19 ReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 19 RNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5899999999999994 12699999999 9999999999987764
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.56 E-value=0.0045 Score=48.07 Aligned_cols=49 Identities=12% Similarity=0.104 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCC-----CCChHHHHHHHHHHHHhhhhhCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLP-----GRTDNEIKNYWNTHIRRKLLNRG 52 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~Lp-----GRTdn~IKNrWn~~lrrkl~~~~ 52 (243)
+||-+.|++|...|+- +|..|+.++. .||-.++|.||+...++.+..+.
T Consensus 35 ~eETd~LfdLc~~fdl--Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 35 KAETDHLFDLSRRFDL--RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHHHHHHHHTTT--CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC--CeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 6899999999999999 9999999984 79999999999999888877653
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=95.34 E-value=0.004 Score=46.55 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHhCC--cCcHHHHhccCCCCChHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTS--KSSWSLIAGRLPGRTDNEIKNYWN 41 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn--~~kWs~IA~~LpGRTdn~IKNrWn 41 (243)
.||+.++.++...|+. ..+|.+||..+||||..+|+.+|.
T Consensus 25 ~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 25 FSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp TTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred HHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 5788888888777772 127999999999999999999874
No 46
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=95.05 E-value=0.032 Score=42.68 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+||-++..+.+..+|. .|..||..||+||..+|-.+|+.+
T Consensus 48 ~eE~~~F~~~~~~~gK--~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 48 EQEKETFREKFMQHPK--NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHHHHHHHHHHSTT--CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 6788899999999998 999999999999999999988764
No 47
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.89 E-value=0.034 Score=39.38 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=36.0
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhc-cCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAG-RLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~ 43 (243)
+||-++-.+.+..+|. .|..|++ .||.||-.+|..+|+.+
T Consensus 14 ~eE~~~Fe~~l~~yGK--df~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 14 EDEVKRFVKGLRQYGK--NFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--cHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 5788888899999998 9999999 69999999999998754
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=94.31 E-value=0.045 Score=49.00 Aligned_cols=28 Identities=11% Similarity=0.164 Sum_probs=26.1
Q ss_pred cHHHHhccCCCCChHHHHHHHHHHHHhh
Q 026135 20 SWSLIAGRLPGRTDNEIKNYWNTHIRRK 47 (243)
Q Consensus 20 kWs~IA~~LpGRTdn~IKNrWn~~lrrk 47 (243)
.|..||+.+|+||++++|+||..++++.
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 7999999999999999999999888774
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.37 E-value=0.13 Score=37.15 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhc-cCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAG-RLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~-~LpGRTdn~IKNrWn~~ 43 (243)
+||-.+-.+.+..+|. .|..|++ .||+||-.+|..+|+.+
T Consensus 13 ~eE~~~Fe~~l~~yGK--df~~I~~~~v~~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 13 ASEACLFEEALEKYGK--DFNDIRQDFLPWKSLTSIIEYYYMW 53 (70)
T ss_dssp HHHHHHHHHHHHHTCS--CHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc--cHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 5788888899999998 9999999 69999999999998754
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.20 E-value=0.058 Score=52.32 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+||-++.++.+.+||. .|..||..+..||..+||++|..+-++
T Consensus 385 ~eE~~~f~~al~~yGk--dw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 385 TEEQLLAVQAIRKYGR--DFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHCc--CHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5788999999999998 999999999999999999999865443
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=91.44 E-value=0.16 Score=37.30 Aligned_cols=48 Identities=10% Similarity=0.210 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHhCC--------cCcHHHHhccCC----CCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVTS--------KSSWSLIAGRLP----GRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn--------~~kWs~IA~~Lp----GRTdn~IKNrWn~~lrrkl~ 49 (243)
++|-.+||+++.++-. ...|..||..|. .||+.+|+++|..+.+....
T Consensus 9 ~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 9 QDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 5677888888876332 015999999974 79999999999997776533
No 52
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.42 E-value=3.9 Score=29.43 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH---HHhhhhhCCC
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH---IRRKLLNRGI 53 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~---lrrkl~~~~~ 53 (243)
.+.+..|+.|+-..|- ....||..| |-+...|+.+.... |++.+...++
T Consensus 39 ~~~~r~vl~l~~~~g~--s~~eIA~~l-gis~~tV~~~l~ra~~~Lr~~l~~~~~ 90 (92)
T 3hug_A 39 SAEHRAVIQRSYYRGW--STAQIATDL-GIAEGTVKSRLHYAVRALRLTLQELGV 90 (92)
T ss_dssp CHHHHHHHHHHHTSCC--CHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHH-CcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3567778888778888 999999998 89999999988743 3444444443
No 53
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.88 E-value=7.4 Score=25.78 Aligned_cols=39 Identities=13% Similarity=0.027 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
.+.+..|+.++-..|- .+..||..| |-+...|+++.+..
T Consensus 17 ~~~~r~il~l~~~~g~--s~~eIA~~l-gis~~tv~~~~~ra 55 (70)
T 2o8x_A 17 TTDQREALLLTQLLGL--SYADAAAVC-GCPVGTIRSRVARA 55 (70)
T ss_dssp CHHHHHHHHHHHTSCC--CHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4567778888778888 999999999 89999999987654
No 54
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=58.26 E-value=13 Score=25.34 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHH----hCCcCcHHHHhccCCCCChHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASL----VTSKSSWSLIAGRLPGRTDNEIKNYWNTHI 44 (243)
Q Consensus 2 ~EEDelLi~l~s~----~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~l 44 (243)
.+.+..|+.++-. -|- .|..||..| |-+...|+.+....+
T Consensus 12 ~~~er~il~l~~~l~~~~~~--s~~eIA~~l-~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREH--TLEEVGAYF-GVTRERIRQIENKAL 55 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCC--CHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCC--CHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 3556667777665 577 999999998 999999999776544
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=56.19 E-value=14 Score=30.53 Aligned_cols=44 Identities=7% Similarity=-0.053 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHhC--CcCcHHHHhc--cCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVT--SKSSWSLIAG--RLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~G--n~~kWs~IA~--~LpGRTdn~IKNrWn~~lrr 46 (243)
+.|=..+++.+..|| .. +|..|+. .|.+++...|+.++...+.+
T Consensus 12 ~~E~r~fira~~kfG~~~~-r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 12 DAEIRRFIKSYKKFGGPLE-RLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp HHHHHHHHHHHTTCSSGGG-CHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCchh-HHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 457778999999999 22 8999985 58999999999988876654
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=55.19 E-value=9.7 Score=34.75 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHhCC---cCcHHHHh---c---------cCCCCChHHHHHHHHHHHHh
Q 026135 2 KKMNSLSNSIASLVTS---KSSWSLIA---G---------RLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn---~~kWs~IA---~---------~LpGRTdn~IKNrWn~~lrr 46 (243)
+|||.+|+-+.-.+|- . .|..|. + +|.-||..+|..|.+++|+-
T Consensus 217 eeEDRfLL~~l~k~G~~~~g-~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 217 EIEDRFLVCMLHKLGFDKEN-VYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp HHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcc-hHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 6899999999889994 4 899997 2 56789999999999988764
No 57
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=54.35 E-value=14 Score=24.89 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHH----HhCCcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 2 KKMNSLSNSIAS----LVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 2 ~EEDelLi~l~s----~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
.+.+..|+.++- .-|- .|..||..| |-+...|+.+....++
T Consensus 7 ~~~er~il~l~~~l~~~~g~--s~~eIA~~l-gis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDY--TLEEVGKQF-DVTRERIRQIEAKALR 51 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCC--CHHHHHHHH-TCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCC--CHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 355666777765 3476 999999998 9999999998776443
No 58
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=52.69 E-value=2.9 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.193 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
++|..+..+.+..||. .|..|+++||+|+-.+|-.+|+.+
T Consensus 194 ~eE~~lFe~al~~yGK--dF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 194 VEDKVLFEQAFSFHGK--TFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHcCc--cHHHHHHHcCCCCHHHHHHHhccc
Confidence 4677888889999998 999999999999999998886543
No 59
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=50.04 E-value=25 Score=32.01 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhh
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRK 47 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrk 47 (243)
.+....+.....||.. .|..||..++|.|..+|+.+......+-
T Consensus 116 rdf~~Fi~a~~kyGr~-~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 116 RDFNQFIKANEKYGRD-DIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhCHH-HHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 4566778899999954 8999999999999999999987776654
No 60
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=48.96 E-value=16 Score=28.89 Aligned_cols=48 Identities=8% Similarity=0.046 Sum_probs=40.0
Q ss_pred ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
|++-|..|+.+...-|.. .|..||+.+ |-+...|+.|++.+....+..
T Consensus 1 lD~~d~~il~~L~~~~~~-s~~~la~~l-g~s~~tv~~rl~~L~~~g~i~ 48 (162)
T 3i4p_A 1 MDRLDRKILRILQEDSTL-AVADLAKKV-GLSTTPCWRRIQKMEEDGVIR 48 (162)
T ss_dssp CCHHHHHHHHHHTTCSCS-CHHHHHHHH-TCCHHHHHHHHHHHHHTTSSC
T ss_pred CCHHHHHHHHHHHHCCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCCee
Confidence 577899999988888853 899999998 999999999998776665543
No 61
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=45.37 E-value=21 Score=27.65 Aligned_cols=38 Identities=8% Similarity=-0.043 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNT 42 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~ 42 (243)
++++..++.|+-..|- ....||..| |-+.+.||++...
T Consensus 95 p~~~r~vl~L~~~~g~--s~~EIA~~l-gis~~tV~~~l~r 132 (157)
T 2lfw_A 95 TPLSRQALLLTAMEGF--SPEDAAYLI-EVDTSEVETLVTE 132 (157)
T ss_dssp CTTHHHHHTTTSSSCC--CHHHHHHTT-TSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHH-CcCHHHHHHHHHH
Confidence 4567778888777887 999999998 8999999998864
No 62
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.36 E-value=40 Score=22.71 Aligned_cols=38 Identities=11% Similarity=-0.055 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHH
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHI 44 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~l 44 (243)
+.+..|+.++ ..|- ....||..| |-+...|+.+....+
T Consensus 19 ~~e~~vl~l~-~~g~--s~~eIA~~l-~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 19 ERERQVLSAV-VAGL--PNKSIAYDL-DISPRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHHHH-TTTC--CHHHHHHHT-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCC--CHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4456666776 6787 899999998 889999998876543
No 63
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=39.86 E-value=24 Score=33.12 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=38.7
Q ss_pred hhhHHHHHHHHHHhCC---cCcHHHHhcc------------CCCCChHHHHHHHHHHHHhhhhh
Q 026135 2 KKMNSLSNSIASLVTS---KSSWSLIAGR------------LPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn---~~kWs~IA~~------------LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
++||..||-+.-.+|- . .|..|... |..||...|..|.+++|+--.+.
T Consensus 233 eeEDRfLL~~l~k~G~~~~g-~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 233 EEEDRFILLMLFKYGLDRDD-VYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccCCCC-hHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 6899999998889994 3 79998543 47899999999999998754443
No 64
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.64 E-value=43 Score=22.10 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=29.9
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHH
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHI 44 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~l 44 (243)
+.+..|+.++ ..|- ....||..| |-+...|+.+.....
T Consensus 14 ~~e~~il~~~-~~g~--s~~eIA~~l-~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 14 KREREVFELL-VQDK--TTKEIASEL-FISEKTVRNHISNAM 51 (74)
T ss_dssp HHHHHHHHHH-TTTC--CHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCC--CHHHHHHHH-CCCHHHHHHHHHHHH
Confidence 4566677776 6787 899999998 889999998876543
No 65
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=37.50 E-value=41 Score=23.58 Aligned_cols=38 Identities=16% Similarity=0.043 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHH
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHI 44 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~l 44 (243)
+.+..|+.++ ..|- ....||..| |-+.+.|+++....+
T Consensus 24 ~~e~~vl~l~-~~g~--s~~eIA~~l-~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 24 PRERDILKLI-AQGL--PNKMIARRL-DITESTVKVHVKHML 61 (82)
T ss_dssp HHHHHHHHHH-TTTC--CHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCC--CHHHHHHHH-CcCHHHHHHHHHHHH
Confidence 4566677776 7787 899999998 899999999876543
No 66
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.83 E-value=50 Score=23.79 Aligned_cols=43 Identities=19% Similarity=0.061 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
+.+..|+.++ ..|- ....||..| |-+...|+++.... +++++.
T Consensus 30 ~~e~~vl~l~-~~g~--s~~eIA~~l-~is~~tV~~~l~r~-~~kL~~ 72 (95)
T 3c57_A 30 DQERTLLGLL-SEGL--TNKQIADRM-FLAEKTVKNYVSRL-LAKLGM 72 (95)
T ss_dssp HHHHHHHHHH-HTTC--CHHHHHHHH-TCCHHHHHHHHHHH-HHHHTC
T ss_pred HHHHHHHHHH-HcCC--CHHHHHHHH-CcCHHHHHHHHHHH-HHHHcC
Confidence 4566677777 7887 899999998 89999999987654 444443
No 67
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=35.63 E-value=59 Score=24.83 Aligned_cols=47 Identities=13% Similarity=0.115 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
++-|..|+.+...-|.. .|..||+.+ |-+...|..+++.+....+..
T Consensus 8 d~~d~~il~~L~~~~~~-s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 54 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRL-TYRELADIL-NTTRQRIARRIDKLKKLGIIR 54 (151)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHT-TSCHHHHHHHHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCCEE
Confidence 45677888877777743 899999998 889999999998877665543
No 68
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.76 E-value=53 Score=23.77 Aligned_cols=39 Identities=13% Similarity=0.001 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 4 MNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 4 EDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
.+..|+.++. -|- ....||..| |-+.+.|+++....+++
T Consensus 33 rE~~Vl~l~~-~G~--s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 33 RECLILQEVE-KGF--TNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp HHHHHHHHHH-TTC--CHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCC--CHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3455666665 788 899999998 89999999998775444
No 69
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=34.62 E-value=45 Score=24.70 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+.+..|+. +-..|- ....||..| |-+...|+++.+..
T Consensus 112 ~~~r~v~~-~~~~g~--s~~EIA~~l-gis~~tV~~~~~ra 148 (164)
T 3mzy_A 112 KFEKEVLT-YLIRGY--SYREIATIL-SKNLKSIDNTIQRI 148 (164)
T ss_dssp HHHHHHHH-HHTTTC--CHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCC--CHHHHHHHH-CCCHHHHHHHHHHH
Confidence 44555555 457787 999999998 89999999988743
No 70
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.23 E-value=29 Score=23.43 Aligned_cols=42 Identities=12% Similarity=0.011 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhhCCCCC
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDP 55 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~~~~~p 55 (243)
-|.++|.+....+|. +++..|+.| |=+- ..+.++++.-++.+
T Consensus 19 ~E~~~i~~aL~~~~g--n~~~aA~~L-Gisr--------~tL~rklkk~gi~~ 60 (63)
T 3e7l_A 19 FEKIFIEEKLREYDY--DLKRTAEEI-GIDL--------SNLYRKIKSLNIRV 60 (63)
T ss_dssp HHHHHHHHHHHHTTT--CHHHHHHHH-TCCH--------HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHH-CcCH--------HHHHHHHHHhCCCC
Confidence 477889999999998 899999887 3332 33445555555543
No 71
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.35 E-value=67 Score=24.12 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
.+.+..++.++-..|- ....||..| |-+...|+.+.+..
T Consensus 27 ~~~~r~vl~l~~~~g~--s~~EIA~~l-giS~~tV~~~l~ra 65 (113)
T 1xsv_A 27 TNKQRNYLELFYLEDY--SLSEIADTF-NVSRQAVYDNIRRT 65 (113)
T ss_dssp CHHHHHHHHHHHTSCC--CHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC--CHHHHHHHH-CcCHHHHHHHHHHH
Confidence 3556677777778888 999999999 99999999987643
No 72
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=32.56 E-value=58 Score=22.91 Aligned_cols=38 Identities=5% Similarity=-0.043 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHH----hCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 3 KMNSLSNSIASL----VTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 3 EEDelLi~l~s~----~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+.+..|+.++-. -|- .|..||..| |-+...|+.+-...
T Consensus 21 ~~er~vl~l~~~l~~~~~~--s~~EIA~~l-gis~~tV~~~~~ra 62 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPK--TLEEVGQYF-NVTRERIRQIEVKA 62 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCC--CHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCC--CHHHHHHHH-CCCHHHHHHHHHHH
Confidence 455666666655 466 899999998 99999999876544
No 73
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=30.69 E-value=85 Score=23.42 Aligned_cols=48 Identities=10% Similarity=0.228 Sum_probs=37.7
Q ss_pred ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
+++-|..|+.+...-|.. .|..||+.+ |-+...|..++..+....+..
T Consensus 2 ld~~~~~il~~L~~~~~~-~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 2 IDERDKIILEILEKDART-PFTEIAKKL-GISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp CCSHHHHHHHHHHHCTTC-CHHHHHHHH-TSCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHcCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCCEe
Confidence 356677788777776743 899999999 999999999998877665543
No 74
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=30.28 E-value=53 Score=23.23 Aligned_cols=42 Identities=17% Similarity=-0.122 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
+.+..|+.++ ..|- ....||..| |-+.+.|+++.... +++++
T Consensus 32 ~~e~~vl~l~-~~g~--s~~eIA~~l-~is~~tV~~~l~r~-~~kL~ 73 (91)
T 2rnj_A 32 EREMEILLLI-AKGY--SNQEIASAS-HITIKTVKTHVSNI-LSKLE 73 (91)
T ss_dssp SHHHHHHHHH-HTTC--CTTHHHHHH-TCCHHHHHHHHHHH-HHHTT
T ss_pred HHHHHHHHHH-HcCC--CHHHHHHHH-CcCHHHHHHHHHHH-HHHHC
Confidence 4456666776 6787 899999998 89999999987654 34443
No 75
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=29.76 E-value=74 Score=22.61 Aligned_cols=42 Identities=5% Similarity=-0.012 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHhCC-cCcHHHHhccC--CCCChHHHHHHHHHH
Q 026135 2 KKMNSLSNSIASLVTS-KSSWSLIAGRL--PGRTDNEIKNYWNTH 43 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn-~~kWs~IA~~L--pGRTdn~IKNrWn~~ 43 (243)
+|+-+..++.+..+|. .+.|..|-..| +|.|-.+|+-++..|
T Consensus 12 ~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 12 HELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 5677888999999994 12478888875 799999999998765
No 76
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=29.63 E-value=83 Score=23.44 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=21.1
Q ss_pred cHHHHhccCCCCC----hHHHHHHHHHHHHhh
Q 026135 20 SWSLIAGRLPGRT----DNEIKNYWNTHIRRK 47 (243)
Q Consensus 20 kWs~IA~~LpGRT----dn~IKNrWn~~lrrk 47 (243)
+|..||..|.--. ...+|..|..+|-..
T Consensus 67 ~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 67 KWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp THHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 7999999994332 467899888877653
No 77
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.93 E-value=93 Score=19.77 Aligned_cols=37 Identities=8% Similarity=-0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHH
Q 026135 5 NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIR 45 (243)
Q Consensus 5 DelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lr 45 (243)
+..|+.++ ..|- ....||..| |-+.+.|+.+.....+
T Consensus 3 e~~vl~l~-~~g~--s~~eIA~~l-~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 3 ERQVLKLI-DEGY--TNHGISEKL-HISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHHH-HTSC--CSHHHHHHT-CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCC--CHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 44555664 6687 889999998 8999999998776443
No 78
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.92 E-value=60 Score=26.00 Aligned_cols=46 Identities=9% Similarity=0.023 Sum_probs=36.9
Q ss_pred hhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhh
Q 026135 2 KKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLL 49 (243)
Q Consensus 2 ~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~ 49 (243)
++-|..|+.+...-|.. .|..||+.+ |-+...|..|+..+....+.
T Consensus 26 d~~d~~IL~~L~~~~~~-s~~eLA~~l-glS~~tv~~rl~~L~~~G~I 71 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKA-PLREISKIT-GLAESTIHERIRKLRESGVI 71 (171)
T ss_dssp CHHHHHHHHHHHHCTTC-CHHHHHHHH-TSCHHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHcCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCCe
Confidence 56788888888777753 899999998 88999999999777655544
No 79
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.56 E-value=51 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=22.2
Q ss_pred cHHHHhccCCCCChHHHHHHHHHHHHh
Q 026135 20 SWSLIAGRLPGRTDNEIKNYWNTHIRR 46 (243)
Q Consensus 20 kWs~IA~~LpGRTdn~IKNrWn~~lrr 46 (243)
+|..||..|.-.....+|..|..+|-.
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 799999998544488999999888755
No 80
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=28.46 E-value=70 Score=24.52 Aligned_cols=48 Identities=8% Similarity=0.047 Sum_probs=37.6
Q ss_pred ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
|++-|..|+.+...-|.. .|..||+.+ |-+...|..+++.+....+..
T Consensus 5 ld~~~~~il~~L~~~~~~-s~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 52 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKA-PLREISKIT-GLAESTIHERIRKLRESGVIK 52 (151)
T ss_dssp CCHHHHHHHHHHHHCTTC-CHHHHHHHH-CSCHHHHHHHHHHHHHHTSSC
T ss_pred cCHHHHHHHHHHHHcCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCCeE
Confidence 356677888877777743 899999998 889999999998876665543
No 81
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=27.22 E-value=77 Score=24.28 Aligned_cols=27 Identities=15% Similarity=0.320 Sum_probs=20.3
Q ss_pred cHHHHhccCCCCC----hHHHHHHHHHHHHh
Q 026135 20 SWSLIAGRLPGRT----DNEIKNYWNTHIRR 46 (243)
Q Consensus 20 kWs~IA~~LpGRT----dn~IKNrWn~~lrr 46 (243)
+|..||..|.--. ...+|..|..+|-.
T Consensus 63 ~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 63 RWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp THHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 7999999983322 45699998877765
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.59 E-value=1.1e+02 Score=17.82 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHH
Q 026135 4 MNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYW 40 (243)
Q Consensus 4 EDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrW 40 (243)
+-..|+.++ .-|- ....||+.| |-+...|+++.
T Consensus 10 ~~~~i~~~~-~~g~--s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 10 ERAQLDVMK-LLNV--SLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp HHHHHHHHH-HTTC--CHHHHHHHH-TCCHHHHHHHH
T ss_pred HHHHHHHHH-HcCC--CHHHHHHHH-CcCHHHHHHHH
Confidence 344566666 4577 899999988 77877777654
No 83
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.43 E-value=81 Score=23.93 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=37.4
Q ss_pred ChhhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHHHHhhhhh
Q 026135 1 MKKMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTHIRRKLLN 50 (243)
Q Consensus 1 ~~EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~lrrkl~~ 50 (243)
|++-|..|+.+...-|.. .|..||+.+ |-+...|..+++.+....+..
T Consensus 1 ld~~~~~il~~L~~~~~~-~~~ela~~l-g~s~~tv~~~l~~L~~~G~i~ 48 (150)
T 2pn6_A 1 MDEIDLRILKILQYNAKY-SLDEIAREI-RIPKATLSYRIKKLEKDGVIK 48 (150)
T ss_dssp CCHHHHHHHHHHTTCTTS-CHHHHHHHH-TSCHHHHHHHHHHHHHTTSSC
T ss_pred CChHHHHHHHHHHHcCCC-CHHHHHHHH-CcCHHHHHHHHHHHHHCCcEE
Confidence 456777888877776642 899999998 889999999998776665543
No 84
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.22 E-value=1.2e+02 Score=22.87 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHHHHHH
Q 026135 3 KMNSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNYWNTH 43 (243)
Q Consensus 3 EEDelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNrWn~~ 43 (243)
+.+..++.++-..|- ....||..| |-+...|+.+....
T Consensus 25 ~~~r~vl~l~y~~g~--s~~EIA~~l-giS~~tV~~~l~ra 62 (113)
T 1s7o_A 25 DKQMNYIELYYADDY--SLAEIADEF-GVSRQAVYDNIKRT 62 (113)
T ss_dssp HHHHHHHHHHHHTCC--CHHHHHHHH-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC--CHHHHHHHH-CcCHHHHHHHHHHH
Confidence 556677777778888 999999998 89999999987654
No 85
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=21.55 E-value=99 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHHH
Q 026135 5 NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKNY 39 (243)
Q Consensus 5 DelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKNr 39 (243)
+..|..+...+|. .|..+|+.| |=++.+|.+.
T Consensus 18 ~~~~~~ia~~lg~--~Wk~LAr~L-g~s~~~I~~I 49 (111)
T 2yqf_A 18 EMKMAVISEHLGL--SWAELAREL-QFSVEDINRI 49 (111)
T ss_dssp HHHHHHHHHHHTT--THHHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHhh--hHHHHHHHc-CCCHHHHHHH
Confidence 5567777789998 999999999 8888887764
No 86
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=21.51 E-value=1.1e+02 Score=22.97 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCcCcHHHHhccCCCCChHHHHH
Q 026135 5 NSLSNSIASLVTSKSSWSLIAGRLPGRTDNEIKN 38 (243)
Q Consensus 5 DelLi~l~s~~Gn~~kWs~IA~~LpGRTdn~IKN 38 (243)
++.|-.+...+|. .|..+|+.| |=++..|.+
T Consensus 18 ~~~~~~ia~~lg~--~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGE--QWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTT--THHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhh--hHHHHHHHh-CCCHHHHHH
Confidence 4566677788998 999999999 888888877
No 87
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=20.36 E-value=1.3e+02 Score=23.34 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=21.6
Q ss_pred cHHHHhccCC--CC-C--hHHHHHHHHHHHHhh
Q 026135 20 SWSLIAGRLP--GR-T--DNEIKNYWNTHIRRK 47 (243)
Q Consensus 20 kWs~IA~~Lp--GR-T--dn~IKNrWn~~lrrk 47 (243)
+|..||..|. .. + ...+|..|..+|-..
T Consensus 75 ~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~y 107 (128)
T 1c20_A 75 LWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPY 107 (128)
T ss_dssp THHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHH
T ss_pred cHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999983 22 2 467999999888774
Done!