Query 026136
Match_columns 243
No_of_seqs 203 out of 907
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026136.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026136hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_V RPL7, 60S ribosomal pro 100.0 7.3E-89 2.5E-93 601.1 24.9 236 8-243 4-239 (239)
2 3iz5_e 60S ribosomal protein L 100.0 4.2E-89 1.5E-93 604.5 15.3 240 4-243 5-244 (244)
3 3izc_e 60S ribosomal protein R 100.0 2.8E-88 9.6E-93 599.2 19.7 242 1-243 1-244 (244)
4 2zkr_w 60S ribosomal protein L 100.0 1.6E-86 5.5E-91 594.3 4.7 238 6-243 33-270 (270)
5 1vq8_W 50S ribosomal protein L 100.0 1.1E-63 3.7E-68 415.6 16.1 153 84-243 1-154 (154)
6 3j21_Y 50S ribosomal protein L 100.0 2.9E-62 1E-66 407.5 14.8 151 85-243 4-155 (155)
7 3jyw_F 60S ribosomal protein L 100.0 2.3E-62 8E-67 427.0 6.0 168 76-243 44-213 (213)
8 1bxy_A Protein (ribosomal prot 99.7 4.6E-18 1.6E-22 120.3 7.3 57 85-141 4-60 (60)
9 2zjr_W 50S ribosomal protein L 99.7 1.9E-17 6.4E-22 115.2 5.0 55 85-139 1-55 (55)
10 3r8s_Z 50S ribosomal protein L 99.7 4.9E-17 1.7E-21 114.2 7.0 57 83-139 2-58 (58)
11 2doa_A RNA polymerase II elong 35.3 10 0.00035 28.9 0.6 16 179-194 45-60 (104)
12 2ahq_A Sigma-54, RNA polymeras 34.6 43 0.0015 23.8 3.8 46 138-186 14-59 (76)
13 3i5g_C Myosin catalytic light 29.5 47 0.0016 25.5 3.7 14 178-191 138-151 (159)
14 4ex6_A ALNB; modified rossman 25.0 1.5E+02 0.0052 22.9 6.1 45 98-143 164-211 (237)
15 3sd7_A Putative phosphatase; s 24.5 1.4E+02 0.0046 23.4 5.7 45 100-144 172-219 (240)
16 3i5g_B Myosin regulatory light 22.9 92 0.0031 23.6 4.2 19 178-196 100-118 (153)
17 4h62_V Mediator of RNA polymer 22.0 20 0.0007 20.8 0.1 20 165-188 9-28 (31)
18 3mc1_A Predicted phosphatase, 21.5 1.7E+02 0.0059 22.3 5.7 44 100-144 148-194 (226)
No 1
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=100.00 E-value=7.3e-89 Score=601.08 Aligned_cols=236 Identities=52% Similarity=0.939 Sum_probs=231.8
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeEEE
Q 026136 8 VVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFI 87 (243)
Q Consensus 8 ~vpE~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~e~kl~~V 87 (243)
+|||++|||||+++++++.+++++.+.++.++++++.+|+|||+|++||+++++|++||+|+|+++|+||+|+||+|+||
T Consensus 4 ~vpe~~lKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~ey~~~~r~~ir~~r~a~~~~~~~~~~e~kl~fV 83 (239)
T 4a17_V 4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAKVAFA 83 (239)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCCEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCccccCCCc
Q 026136 88 IRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDN 167 (243)
Q Consensus 88 irirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn 167 (243)
|||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++|||||
T Consensus 84 irIRg~ig~~~~~rktL~~LgL~ki~~~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~Ltdn 163 (239)
T 4a17_V 84 IRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIYKRGFAKVNGQRIPLTDN 163 (239)
T ss_dssp EECSCSSSCCHHHHHHHHHTTCCBTTEEEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHHHSCEEEETTEEEECCCS
T ss_pred EEecccCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHHhhCccccCCceecCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCCCChhHHHHHHHhhC
Q 026136 168 SIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 243 (243)
Q Consensus 168 ~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~li~rm~ 243 (243)
++||++||++||+|||||||||||+|++|+++++|||||+||||+|||++++.||.+||++|||||.||+||++|+
T Consensus 164 ~~ie~~lGk~giiciEDLiheI~t~g~~fk~~~~fl~pFkL~~PrgG~k~~~~~f~egG~~G~r~~~IN~Li~rM~ 239 (239)
T 4a17_V 164 TIVEKSLGKFGITCVEDLIHEITTVGPHFKEANNFLWPFKLDTPRGGFRNKRHAYHQGGDWGNREVYINDLVKAML 239 (239)
T ss_dssp HHHHHHHGGGTCCSHHHHHHHHHHTCSCCHHHHHHBCCEECCCCSSCCSCTTSBGGGTCCBEECTTTHHHHHHHHC
T ss_pred HHHHHhCCcCCcccHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccCCCccccHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999888999999999999999999999997
No 2
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=100.00 E-value=4.2e-89 Score=604.49 Aligned_cols=240 Identities=78% Similarity=1.259 Sum_probs=235.0
Q ss_pred ccCCCCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCe
Q 026136 4 AAAVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAK 83 (243)
Q Consensus 4 ~~~~~vpE~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~e~k 83 (243)
...+.|||++|||||+++++++++++++.+.++.++++++.+|+|||+|+++|+++++|.+|++|+++++|+||+|+||+
T Consensus 5 ~~~~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~e~k 84 (244)
T 3iz5_e 5 AAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAK 84 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHSCSCCCSCCCCCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc
Confidence 34567999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred eEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCcccc
Q 026136 84 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIA 163 (243)
Q Consensus 84 l~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ 163 (243)
++|||||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++++|
T Consensus 85 l~fVirIRg~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~KRG~~k~~~~~i~ 164 (244)
T 3iz5_e 85 PLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIP 164 (244)
T ss_dssp CEEEECCSCSTTSCHHHHHHHHHTCCCSTTEEEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHHHHCCCCTTSCCCC
T ss_pred eEEEEEecCcCCCCHHHHHHHHHcCCCccCCEEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHHhhCeeccCCceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCCCChhHHHHHHHhhC
Q 026136 164 LTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 243 (243)
Q Consensus 164 ltdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~li~rm~ 243 (243)
||||++||++||++||+|+||||||||++|++|+++++|||||+||||+|||+++++||.+||++||||+.||+||++||
T Consensus 165 ltdn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~PFkL~~Pr~G~k~~~~~~~egG~~G~r~~~IN~Li~rM~ 244 (244)
T 3iz5_e 165 LANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLVRRMN 244 (244)
T ss_dssp SSTHHHHTCSCCSSSCCCHHHHHHHHHHTCTTCSSSCCCSSCEECCCCTTCCSCTTSBTTTTCSBEECHHHHHHHHTTCC
T ss_pred CChHHHHHHhccccCcccHHHHHHHHHhCccCHHHhhcccCCeeCCCCccccccCccccccCCCccccHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999999997
No 3
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=100.00 E-value=2.8e-88 Score=599.25 Aligned_cols=242 Identities=52% Similarity=0.946 Sum_probs=232.8
Q ss_pred CccccCCCCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCC
Q 026136 1 MAEAAAVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNP 80 (243)
Q Consensus 1 m~~~~~~~vpE~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~ 80 (243)
||+.+ ..|||++|||||+++++++++++++.+.++.++++++.+|+|||+|+++|+++++|.+|++|+++++|+||+|+
T Consensus 1 ~~~~~-~~vpE~llkkrk~~~~~~~~~~~~~~~~k~~~k~~r~~~~~rae~~~~ey~~~~r~~ir~~r~a~~~~~~~~p~ 79 (244)
T 3izc_e 1 MAAEK-ILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEA 79 (244)
T ss_dssp ------CHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHSSCCCCSCCCC
T ss_pred CCCcc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 55544 36999999999999999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCc
Q 026136 81 EAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQ 160 (243)
Q Consensus 81 e~kl~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~ 160 (243)
||+++|||||||++|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||+++++++
T Consensus 80 e~kl~fVirIRs~ig~~~~~rktL~~LgL~ki~~~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~KRG~~k~~~~ 159 (244)
T 3izc_e 80 QHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQ 159 (244)
T ss_dssp CCCCEEEECCSCSSSCCHHHHHHHHHHTCCSTTEEEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHHHHCCCCSSSC
T ss_pred CCceEEEEEecCcCCCCHHHHHHHHHcCCCccCCeEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHHhhCccccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccc--cccccccccCCCCCChhHHHHH
Q 026136 161 RIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLK--KKRNHYVEGGDAGNREDYINEL 238 (243)
Q Consensus 161 ~~~ltdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~k~~~~~gG~~G~r~~~In~l 238 (243)
++|||||++||++||++||+|+||||||||++|+||+++++|||||+||||+|||+ ++++||.+||++||||+.||+|
T Consensus 160 ~i~ltdn~~iee~lgk~giiciEDLiheI~~~g~~fk~~~~fl~pFkL~~PrgG~~~~~~~~~~~egG~~G~r~~~IN~L 239 (244)
T 3izc_e 160 RVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKL 239 (244)
T ss_dssp CCCSCHHHHHTCCCCSSSCCSHHHHHHHHHHTCTTSTTTSSCSSCEECCCCGGGSSCSCTTCBTTTTSSBEECHHHHHHH
T ss_pred eecCCchHHHHHhccccCceeHHHHHHHHHhCCcCHHHhhccCCCeECCCCccccccCCcccccccCCCccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 6789999999999999999999
Q ss_pred HHhhC
Q 026136 239 IRRMN 243 (243)
Q Consensus 239 i~rm~ 243 (243)
|++||
T Consensus 240 i~rM~ 244 (244)
T 3izc_e 240 VKSMN 244 (244)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 99997
No 4
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.6e-86 Score=594.33 Aligned_cols=238 Identities=63% Similarity=1.033 Sum_probs=156.8
Q ss_pred CCCCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCeeE
Q 026136 6 AVVVPESVLKKKKREEEWALAKKQELEAAKKKKAETRKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLL 85 (243)
Q Consensus 6 ~~~vpE~llKKrk~~~~~~~~~~~~~~~~k~~~k~~rk~~~krae~~vkeyr~~erd~~r~kr~ak~~~~~~~~~e~kl~ 85 (243)
.|.|||++|||||+++++++++++++.+.++.++++++.+|+|||+|+++|+++++|.+|++|+++++|+||+|+||+++
T Consensus 33 ~~~vpE~llKkrk~~~~~~~~~~~~~~~~k~~~~~~r~~~~~rae~y~~eyr~~~r~~ir~~r~akk~g~~yvp~e~kl~ 112 (270)
T 2zkr_w 33 VPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKLA 112 (270)
T ss_dssp ------------------------------------------------------------------------------CE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCcee
Confidence 45799999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCccccCC
Q 026136 86 FIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALT 165 (243)
Q Consensus 86 ~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~lt 165 (243)
||+||||.+|++|++++||++|||+++|++||+++||+++|||++|+|||+|||||++||++||||||++++++++||||
T Consensus 113 ~V~rirs~ig~~~~~rktL~~LgLrki~~~V~v~dtpa~rgML~kV~~~V~vgepnlksv~eLi~KRG~~ki~~k~i~Lt 192 (270)
T 2zkr_w 113 FVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALT 192 (270)
T ss_dssp EEECCSCSSSSCTTSSSHHHHTCCCSSSEEEEECCCHHHHHTTTSSTTSCBCCCCCTTTHHHHHHHCCCCSSSSSCSCSS
T ss_pred EEEEeCCcCCCCHHHHHHHHHcCCCcCCCeEEEeCCHHHHHHHHhcccceeEecCCHHHHHHHHHhhcccccCCeeeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCCCChhHHHHHHHhhC
Q 026136 166 DNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN 243 (243)
Q Consensus 166 dn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~~~In~li~rm~ 243 (243)
||+|||++||++||+|+||||||||++|+||+++++|||||+||||+|||++++++|++||++||||++||+||++|+
T Consensus 193 dN~iIee~LG~~giiciEDliheI~t~g~~fk~~~~fl~pFkL~~P~~G~k~k~~~~~egG~~G~r~~~IN~Li~rM~ 270 (270)
T 2zkr_w 193 DNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270 (270)
T ss_dssp HHHHSSSSSCSSCCCSHHHHHHHTSSCSSCCSSSSSCCSCEECCCCSSCCSCSSCC-CCSCSCC-CCTTTTTTTTTCC
T ss_pred chHHHHhhccCcCcchHHHHHHHHHhccccHHHHhCcCCCeeCCCccccccccccccccCCcccccHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999888999999999999999999999997
No 5
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=100.00 E-value=1.1e-63 Score=415.58 Aligned_cols=153 Identities=18% Similarity=0.358 Sum_probs=149.9
Q ss_pred eEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCcccc
Q 026136 84 LLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIA 163 (243)
Q Consensus 84 l~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~ 163 (243)
++||+|+||.+|++|++++||++|||+|+|++||+++||+++|||++|+|||+|||||++||++||||||++++++ +|
T Consensus 1 l~fV~rirs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~KRG~~~~~~--~~ 78 (154)
T 1vq8_W 1 MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGD--AD 78 (154)
T ss_dssp CEEEEECSCSTTSCHHHHHHHHHTTCCSTTEEEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHHHHCCBSSSC--CC
T ss_pred CEEEEEeCCcCCCCHHHHHHHHHcCCCcCCCEEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHHhhCccccCC--cc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred CCCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccccccccccccCCCCCCh-hHHHHHHHhh
Q 026136 164 LTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRE-DYINELIRRM 242 (243)
Q Consensus 164 ltdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~~~k~~~~~gG~~G~r~-~~In~li~rm 242 (243)
||||++|| ++||+|+||||||||++|+||+++ +|||||+||||++||++++++|++||++|||| ++||+||++|
T Consensus 79 ltdn~iie----~~gi~ciedlihei~~~g~~f~~~-~fl~pF~L~~P~~G~~~~~~~~~egG~~G~r~~~~In~Li~rM 153 (154)
T 1vq8_W 79 VDDEWVAE----HTDYDDISGLAFALLSEETTLREQ-GLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLLEAM 153 (154)
T ss_dssp CSHHHHHH----HSSSSSHHHHHHHHHTTSCCTGGG-TBCSCEECCCCTTCCSCSSSBGGGTCSBEECCHHHHHHHHHHT
T ss_pred CCchhhcc----ccccccHHHHHHHHHhCCcchhhc-CCcCceecCCccccccccccccccCCccccccHHHHHHHHHHh
Confidence 99999998 679999999999999999999999 99999999999999998899999999999999 9999999999
Q ss_pred C
Q 026136 243 N 243 (243)
Q Consensus 243 ~ 243 (243)
+
T Consensus 154 ~ 154 (154)
T 1vq8_W 154 R 154 (154)
T ss_dssp C
T ss_pred C
Confidence 7
No 6
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.9e-62 Score=407.48 Aligned_cols=151 Identities=33% Similarity=0.545 Sum_probs=145.8
Q ss_pred EEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhcccccCCccccC
Q 026136 85 LFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIAL 164 (243)
Q Consensus 85 ~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~k~~~~~~~l 164 (243)
++|+|+||.+|++|++++||++|||+|+|++||+++||+++|||++|+|||+|||||++||++||||||+ ++|+ +||
T Consensus 4 ~~V~~irs~ig~~~~~r~tL~~LgL~ki~~~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~KRG~--~~~~-~~l 80 (155)
T 3j21_Y 4 LAVIRIRGRVNVKRPVRDTLAMLRLHRVNHCVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIRKRGR--LIGN-KPV 80 (155)
T ss_dssp EEEEECSCSTTCCHHHHHHHHHTTCCSTTEEEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHHHHCC--SSSS-CCC
T ss_pred EEEEEeCCCCCCCHHHHHHHHHcCCCcCCCEEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHHHhcc--ccCC-CcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999 5555 599
Q ss_pred CCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccc-cccccccccCCCCCChhHHHHHHHhhC
Q 026136 165 TDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLK-KKRNHYVEGGDAGNREDYINELIRRMN 243 (243)
Q Consensus 165 tdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~-~~k~~~~~gG~~G~r~~~In~li~rm~ 243 (243)
|||+|+| ++|| |+||||||||++|++|+++++|+|||+||||+|||+ ++++||.+||++||||++||+||++|+
T Consensus 81 tdn~l~e----k~gi-ciEdli~eI~~~g~~fk~~~~fl~pFkL~~P~~G~k~~~~~~~~egG~~G~r~~~In~Li~rM~ 155 (155)
T 3j21_Y 81 TDEYVKE----KLGM-TIEEFAQKVVNGEMSLKDLPNLKPVFRLHPPRGGFRGSKKRSFKEGGALGYRGEKINELIERML 155 (155)
T ss_dssp CHHHHHH----HSSS-CHHHHHHHHHHTSSCTTTSCSSCSEEECCCCTTCSSSCSSSBTTTTSSBEECCTTHHHHHHHTC
T ss_pred CHHHHHH----HhCC-CHHHHHHHHHhCCcCHHHhhCcCCceecCCccchhhcccccccccCCCCcCcHHHHHHHHHHcC
Confidence 9999998 5799 999999999999999999999999999999999998 478999999999999999999999996
No 7
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=100.00 E-value=2.3e-62 Score=427.04 Aligned_cols=168 Identities=57% Similarity=1.077 Sum_probs=164.7
Q ss_pred CccCCCCeeEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCCHHHHHHHHHhhccc
Q 026136 76 FYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVRELIYKRGYG 155 (243)
Q Consensus 76 ~~~~~e~kl~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~~~tv~~Li~KRG~~ 155 (243)
-.+|.+++++||+|++|..+++++++++|++|+|+++|++||++.|+++.+||++|+|||+|||||++||++||||||++
T Consensus 44 ~Svp~e~kL~fVIRIrGin~ispk~rkvLqLLRL~rInsgvfvk~~k~t~~mL~~VepyV~~G~p~l~tv~eLi~KRg~~ 123 (213)
T 3jyw_F 44 AAAAAAAGLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFG 123 (213)
T ss_dssp HTCSCCCCCCCCCCCSCSSCCCHHHHHHHGGGCCCSSSCBCCCCCSSTTTTHHHHTTTTSCEECCCSSTTTSHHHHSCCC
T ss_pred hhCcccCccceeeeecCccCCCCchHHHHHHcccceecceEEecCCHHHHHHHhhccchheeecCCHHHHHHHHHhcCcc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCccccCCCchHHHhhhccCCcccHHHHHHHHHhcCCChhhhhcCCCCcccCCCCcccc--cccccccccCCCCCChh
Q 026136 156 KLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLK--KKRNHYVEGGDAGNRED 233 (243)
Q Consensus 156 k~~~~~~~ltdn~~iee~lg~~gi~ciEdlv~ei~~~g~~f~~v~~fl~pF~L~~P~~G~~--~~k~~~~~gG~~G~r~~ 233 (243)
+++++++|||||++||++||++||+|+|||+|||+++|++|+++++|||||+||||+|||+ ++++||.+||++|||||
T Consensus 124 k~~~~~i~ltdn~iie~~lg~~gi~ciedli~ei~~~g~~f~~~~~fl~pF~L~~P~~G~~~~~~~~~~~egG~~G~r~~ 203 (213)
T 3jyw_F 124 KINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREE 203 (213)
T ss_dssp SSSCCSSCSSSHHHHSSSSCCSCCCCHHHHHHHHTTTCSSCTTTTTSCSSBCCCCCTTCCSSSSSSCCTTTSCSSSEESS
T ss_pred cCCCCeecCCcchHHHHhccCCCceeHHHHHHHHHhCCcCHHHhhCCCCCEECCCCCCCccCCCeecccccCCCCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 67899999999999999
Q ss_pred HHHHHHHhhC
Q 026136 234 YINELIRRMN 243 (243)
Q Consensus 234 ~In~li~rm~ 243 (243)
.||+||++|+
T Consensus 204 ~In~Li~~m~ 213 (213)
T 3jyw_F 204 FINKLVKSMN 213 (213)
T ss_dssp THHHHHTTCC
T ss_pred HHHHHHHHhC
Confidence 9999999997
No 8
>1bxy_A Protein (ribosomal protein L30); X-RAY crystallography, conformational changes, ribosome; 1.90A {Thermus thermophilus} SCOP: d.59.1.1 PDB: 1giy_X 1ml5_x* 1vsa_X 1vsp_X 1yl3_X 2b66_3 2b9n_3 2b9p_3 2hgj_2 2hgq_2 2hgu_2 2j01_3 2j03_3 2jl6_3 2jl8_3 2v47_3 2v49_3 2wdi_3 2wdj_3 2wdl_3 ...
Probab=99.73 E-value=4.6e-18 Score=120.25 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=55.6
Q ss_pred EEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcCCC
Q 026136 85 LFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPN 141 (243)
Q Consensus 85 ~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~p~ 141 (243)
+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|+++|
T Consensus 4 ~kItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~veev~ 60 (60)
T 1bxy_A 4 LKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKVAHLVRVEVVE 60 (60)
T ss_dssp EEEEECSCCTTCCHHHHHHHHHHTCCSTTCEEEEECCHHHHHHHHHTTTTEEEEEEC
T ss_pred EEEEEeecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHhHHHHhHheEEEEecC
Confidence 789999999999999999999999999999999999999999999999999999875
No 9
>2zjr_W 50S ribosomal protein L30; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.59.1.1 PDB: 1nwx_X* 1nwy_X* 1pnu_X 1pny_X 1sm1_X* 1vor_Z 1vou_Z 1vow_Z 1voy_Z 1vp0_Z 1xbp_X* 2zjp_W* 2zjq_W 1nkw_X 3cf5_W* 3dll_W* 3pio_W* 3pip_W*
Probab=99.69 E-value=1.9e-17 Score=115.19 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=53.1
Q ss_pred EEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcC
Q 026136 85 LFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGY 139 (243)
Q Consensus 85 ~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~ 139 (243)
+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|++
T Consensus 1 ~kIt~vrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hlV~vee 55 (55)
T 2zjr_W 1 MKIKLVRSVIGRPGNQVKTVQALGLRKIGDSREVSDTPAVRGMVKTVKHLLEVQE 55 (55)
T ss_dssp CEEEBCSCSTTSCHHHHHHHHHTTCCSTTCEEECCCSHHHHHHHHHTGGGBCCCC
T ss_pred CEEEEEecCCCCCHHHHHHHHHhCCCCCCCEEEecCCHHHHHHHHHhHhhEEEeC
Confidence 3589999999999999999999999999999999999999999999999999986
No 10
>3r8s_Z 50S ribosomal protein L30; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_X 1p86_X 2awb_Y 2aw4_Y 2i2v_Z 2j28_Y 2i2t_Z* 2qao_Y* 2qba_Y* 2qbc_Y* 2qbe_Y 2qbg_Y 2qbi_Y* 2qbk_Y* 2qov_Y 2qox_Y 2qoz_Y* 2qp1_Y* 2rdo_Y 2vhm_Y ...
Probab=99.68 E-value=4.9e-17 Score=114.22 Aligned_cols=57 Identities=28% Similarity=0.155 Sum_probs=54.7
Q ss_pred eeEEEEeecccCCCCHHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccCeEEEcC
Q 026136 83 KLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGY 139 (243)
Q Consensus 83 kl~~Virirg~~~~~~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~~V~~G~ 139 (243)
+.+.|+++||.+|.++++++||++|||+++|++|+++|||+++|||++|+|||+|.|
T Consensus 2 ~~lkItlvrS~ig~~~~~r~tl~~LGL~k~~~~v~~~dtp~irGMI~kV~hLV~vee 58 (58)
T 3r8s_Z 2 KTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE 58 (58)
T ss_dssp CEEEEEECSCSTTCCHHHHHHHHHHTCCSTTCCCEEECCHHHHHHHHHTGGGEEEEC
T ss_pred CeEEEEEeecCCCCCHHHHHHHHHcCCCCCCCEEEecCCHHHHHHHHHHHheEEEeC
Confidence 357899999999999999999999999999999999999999999999999999975
No 11
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=35.26 E-value=10 Score=28.94 Aligned_cols=16 Identities=6% Similarity=0.306 Sum_probs=12.3
Q ss_pred cccHHHHHHHHHhcCC
Q 026136 179 IICMEDLIHEILTVGP 194 (243)
Q Consensus 179 i~ciEdlv~ei~~~g~ 194 (243)
..|+..+.+++++.++
T Consensus 45 ~~~l~~iL~eVA~~~~ 60 (104)
T 2doa_A 45 KDALDGLLQQVANMSA 60 (104)
T ss_dssp HHHHHHHHHHSSEECS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4578888888888764
No 12
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=34.63 E-value=43 Score=23.83 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred cCCCHHHHHHHHHhhcccccCCccccCCCchHHHhhhccCCcccHHHHH
Q 026136 138 GYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLI 186 (243)
Q Consensus 138 G~p~~~tv~~Li~KRG~~k~~~~~~~ltdn~~iee~lg~~gi~ciEdlv 186 (243)
|..+.++|+++|..- +.-.+...||||..|.+ .|.+.||.+-.-=|
T Consensus 14 ~~~S~~~Ik~~Ik~l--I~~Ed~~kPlSD~~I~~-~L~~~Gi~IaRRTV 59 (76)
T 2ahq_A 14 EGLTQGELMKLIKEI--VENEDKRKPYSDQEIAN-ILKEKGFKVARRTV 59 (76)
T ss_dssp CSCCHHHHHHHHHHH--GGGCCSSSCCCHHHHHH-HHTTTSSCCCHHHH
T ss_pred ccccHHHHHHHHHHH--HHhcCCCCCCCHHHHHH-HHHHcCCCccHHHH
Confidence 456788888887642 11333457999999964 77778987654433
No 13
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=29.47 E-value=47 Score=25.53 Aligned_cols=14 Identities=36% Similarity=0.665 Sum_probs=8.9
Q ss_pred CcccHHHHHHHHHh
Q 026136 178 GIICMEDLIHEILT 191 (243)
Q Consensus 178 gi~ciEdlv~ei~~ 191 (243)
|-|+.+++++.+.+
T Consensus 138 G~I~~~EF~~~m~~ 151 (159)
T 3i5g_C 138 GNIKYEDLMKKVMA 151 (159)
T ss_dssp CCEEHHHHHHHHHH
T ss_pred CeEeHHHHHHHHHC
Confidence 56666666666654
No 14
>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A
Probab=24.99 E-value=1.5e+02 Score=22.89 Aligned_cols=45 Identities=13% Similarity=0.030 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCCHhhHHHHhhccC---eEEEcCCCHH
Q 026136 98 PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP---YVTYGYPNLK 143 (243)
Q Consensus 98 ~~~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~---~V~~G~p~~~ 143 (243)
.-.+.+++.||+. ...++++-|++.-..|++.+-- +|+||.-+.+
T Consensus 164 ~~~~~~~~~lg~~-~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~ 211 (237)
T 4ex6_A 164 DMALHVARGLGIP-PERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPD 211 (237)
T ss_dssp HHHHHHHHHHTCC-GGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHH
T ss_pred HHHHHHHHHcCCC-HHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCCHH
Confidence 3455666777763 4567777777777777777776 6666654433
No 15
>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}
Probab=24.48 E-value=1.4e+02 Score=23.41 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=29.0
Q ss_pred HHHHHHHhCCCcccceEEEeCCHhhHHHHhhccC---eEEEcCCCHHH
Q 026136 100 TKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP---YVTYGYPNLKS 144 (243)
Q Consensus 100 ~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~---~V~~G~p~~~t 144 (243)
...+++.||+.....++++-|++.-..|.+.+-- +|.||.-+.+.
T Consensus 172 ~~~~~~~~g~~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~ 219 (240)
T 3sd7_A 172 IQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEE 219 (240)
T ss_dssp HHHHHHHHTCCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSSCCHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCCHHHHHHHHHCCCCEEEEeCCCCCHHH
Confidence 4556667776656677777777777777777765 55556555443
No 16
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.90 E-value=92 Score=23.61 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=11.5
Q ss_pred CcccHHHHHHHHHhcCCCh
Q 026136 178 GIICMEDLIHEILTVGPHF 196 (243)
Q Consensus 178 gi~ciEdlv~ei~~~g~~f 196 (243)
|.|+.++|-+.+.+.|.++
T Consensus 100 G~I~~~el~~~l~~~g~~l 118 (153)
T 3i5g_B 100 GFIPEDYLKDLLENMGDNF 118 (153)
T ss_dssp SCCCHHHHHHHHHSSSSCC
T ss_pred CeEeHHHHHHHHHHcCCcC
Confidence 6666666666666666553
No 17
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=22.00 E-value=20 Score=20.83 Aligned_cols=20 Identities=35% Similarity=0.667 Sum_probs=13.7
Q ss_pred CCchHHHhhhccCCcccHHHHHHH
Q 026136 165 TDNSIIEQALGQHGIICMEDLIHE 188 (243)
Q Consensus 165 tdn~~iee~lg~~gi~ciEdlv~e 188 (243)
-|+..|||.|.. |||.++.|
T Consensus 9 fdekqieelldn----cietfvae 28 (31)
T 4h62_V 9 FDEKQIEELLDN----CIETFVAE 28 (31)
T ss_dssp -CHHHHHHHHHH----HHHHHHTC
T ss_pred ccHHHHHHHHHH----HHHHHHhh
Confidence 366778888843 88888643
No 18
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0
Probab=21.54 E-value=1.7e+02 Score=22.33 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=31.3
Q ss_pred HHHHHHHhCCCcccceEEEeCCHhhHHHHhhccC---eEEEcCCCHHH
Q 026136 100 TKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEP---YVTYGYPNLKS 144 (243)
Q Consensus 100 ~~k~L~~L~L~ki~~~v~v~~~~~~~gmL~~V~~---~V~~G~p~~~t 144 (243)
...+++.||+..- .++++-|++.-..|++.+-- +|.||..+.+.
T Consensus 148 ~~~~~~~lgi~~~-~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~ 194 (226)
T 3mc1_A 148 IRYAMESLNIKSD-DAIMIGDREYDVIGALKNNLPSIGVTYGFGSYEE 194 (226)
T ss_dssp HHHHHHHHTCCGG-GEEEEESSHHHHHHHHTTTCCEEEESSSSSCHHH
T ss_pred HHHHHHHhCcCcc-cEEEECCCHHHHHHHHHCCCCEEEEccCCCCHHH
Confidence 4567777777643 78888888888888888776 66667655543
Done!