BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026137
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UIY|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Thermus
Thermophilus Hb8
Length = 253
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 71/165 (43%), Gaps = 7/165 (4%)
Query: 22 DEHRLGPSAIDSILSAI-AQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGAR 79
D R P + + LS + A EA PG A + T GK FS G DLA+ + + GA
Sbjct: 16 DPERRNPLSPEXALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERV-TELGAE 74
Query: 80 ERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEV 139
E + R L + P PT LAL+ D VV + + Y +EV
Sbjct: 75 ENYRHSLSLXR-LFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVXDEEARLGY-TEV 132
Query: 140 DIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
IG L R VG A +D+LL + ++ EA +GLV
Sbjct: 133 KIGFVAALVSVILVR-AVGEKAA-KDLLLTGRLVEAREAKALGLV 175
>pdb|3LKE|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
pdb|3LKE|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Halodurans
Length = 263
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 33 SILSAIAQAKAEATPGSAFITTSHGKFFSNG---FDLAWAQAAGSRTGARERVHYMFKSF 89
S+L AI E + S + + H +FS+G DL + S RE +H +
Sbjct: 35 SLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVL---- 90
Query: 90 RPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDY-VVMRRDKGVLYMSEVDIGLTLPDY 148
V + P T F + L+ D + +RR K + ++ I PD
Sbjct: 91 NHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRRAKFLENFHKMGIS---PDL 147
Query: 149 CAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE 196
A+ F ++ ++LL K EEALR+GL++ ++++ + E
Sbjct: 148 GASYFLPRIIGYEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQE 195
>pdb|3Q1T|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
pdb|3Q1T|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From
Mycobacterium Avium
Length = 278
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 69/162 (42%), Gaps = 9/162 (5%)
Query: 50 AFITTSHGKFFSNG--FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXX 107
A + GK FS+G FDL + G G R+ M + R LV M++ P
Sbjct: 66 AVLVRGEGKAFSSGGSFDLI-DETIGDYQG---RIRIM-REARDLVHNMINCDTPVVSAI 120
Query: 108 XXXXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVL 167
++AL D V R L +G+ D+ A + VG A A+ L
Sbjct: 121 RGPAVGAGLVVALLADISVAGR-TAKLIDGHTKLGVAAGDHAAICWPLLVGMAKAKY-YL 178
Query: 168 LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK 209
L + + GEEA R+GLV D ++ ++ A+ GK G +
Sbjct: 179 LTCETLLGEEAERIGLVSLCVDDDDVLSTAAGIAGKLAQGAQ 220
>pdb|3QK8|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
pdb|3QK8|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase Echa15 From
Mycobacterium Marinum In Complex With An Unknown Ligand
Length = 272
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 10/157 (6%)
Query: 52 ITTSHGKFFSNG--FDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXX 109
+ GK FS+G F+L + G G R+ M + R LV +++L P
Sbjct: 62 LVRGEGKAFSSGGSFELI-DETIGDYEG---RIRIM-REARDLVLNLVNLDKPVVSAIRG 116
Query: 110 XXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLR 169
++AL D V ++ +G+ D+ A + VG A A+ LL
Sbjct: 117 PAVGAGLVVALLADISVASATAKIID-GHTKLGVAAGDHAAICWPLLVGMAKAKY-YLLT 174
Query: 170 AKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLA 206
+ + GEEA R+GLV D +E + A+ RL + LA
Sbjct: 175 CETLSGEEAERIGLVSTCVDDDEVLPTAT-RLAENLA 210
>pdb|3HRX|A Chain A, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|B Chain B, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|C Chain C, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|D Chain D, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|E Chain E, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
pdb|3HRX|F Chain F, Crystal Structure Of Phenylacetic Acid Degradation Protein
Paag
Length = 254
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 89/207 (42%), Gaps = 14/207 (6%)
Query: 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFF 60
M E+ V VLTL ++ + +D++ +A+ + + E A + T G+ F
Sbjct: 1 MVLKERQDGVLVLTLNRPEKLNA--ITGELLDALYAALKEGE-EDREVRALLLTGAGRAF 57
Query: 61 SNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILAL 120
S G DL G R E H + + +V A+ L P LAL
Sbjct: 58 SAGQDLT---EFGDRKPDYE-AH--LRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLAL 111
Query: 121 SHDYVVMRRDKGVLYMSE-VDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEAL 179
D + G + + V IGL + L VG A A+ ++LL + ++ EEAL
Sbjct: 112 WGDLRLA--AVGASFTTAFVRIGLVPDSGLSFLLPRLVGLAKAQ-ELLLLSPRLSAEEAL 168
Query: 180 RMGLVEAAYDSEERVAEASMRLGKQLA 206
+GLV + E++ E ++ L K+LA
Sbjct: 169 ALGLVHRVVPA-EKLMEEALSLAKELA 194
>pdb|1PVY|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1PVY|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii In Complex With Ribulose 5-Phosphate
pdb|1SNN|A Chain A, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
pdb|1SNN|B Chain B, 3,4-dihydroxy-2-butanone 4-phosphate Synthase From
Methanococcus Jannaschii
Length = 227
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 174 KGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG-------RKCTGEVYAEIRKSLYPDL 226
K EAL+ G + YDS+ER E M + Q RK G + I +L+PD+
Sbjct: 6 KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62
Query: 227 CGVLGL 232
C LG+
Sbjct: 63 CNKLGI 68
>pdb|1PVW|A Chain A, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|B Chain B, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
pdb|1PVW|C Chain C, 3,4-Dihydroxy-2-Butanone 4-Phosphate Synthase From M.
Jannaschii
Length = 227
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 174 KGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG-------RKCTGEVYAEIRKSLYPDL 226
K EAL+ G + YDS+ER E M + Q RK G + I +L+PD+
Sbjct: 6 KAIEALKKGEIILVYDSDEREGETDMVVASQFITPEHIRIMRKDAGGL---ICTALHPDI 62
Query: 227 CGVLGL 232
C LG+
Sbjct: 63 CNKLGI 68
>pdb|1WZ8|A Chain A, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|B Chain B, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|C Chain C, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|D Chain D, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|E Chain E, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
pdb|1WZ8|F Chain F, Crystal Structure Of Probable Enoyl-Coa Dehydratase From
Thermus Thermophilus Hb8
Length = 264
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 85 MFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGV-LYMSEVDIGL 143
+F R LV ++ P P LAL+ D V+ KG L + +G+
Sbjct: 89 VFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVV--GKGTRLLDGHLRLGV 146
Query: 144 TLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203
D+ L+ VG A A+ +LL + + GEEA R+GLV A + +E+V E ++ + +
Sbjct: 147 AAGDHAVLLWPLLVGMAKAKYHLLLN-EPLTGEEAERLGLVALAVE-DEKVYEKALEVAE 204
Query: 204 QLA 206
+LA
Sbjct: 205 RLA 207
>pdb|2GTR|A Chain A, Human Chromodomain Y-Like Protein
pdb|2GTR|B Chain B, Human Chromodomain Y-Like Protein
pdb|2GTR|C Chain C, Human Chromodomain Y-Like Protein
Length = 261
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 8/202 (3%)
Query: 6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFD 65
+ D F L + + + + L P + + SA++ A A+ + + ++ G F G D
Sbjct: 10 RKQDGFTHILLSTKSSENNSLNPEVMREVQSALSTAAADDS--KLVLLSAVGSVFCCGLD 67
Query: 66 LAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXX-XFILALSHDY 124
+ + RE M ++ R V + P IL L
Sbjct: 68 FIYFIRRLTDDRKRESTK-MAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCD-- 124
Query: 125 VVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184
VV +K G + PD C+ + K+ + ++LL +K+ +EA GLV
Sbjct: 125 VVWANEKAWFQTPYTTFGQS-PDGCSTVMFPKIMGGASANEMLLSGRKLTAQEACGKGLV 183
Query: 185 EAAYDSEERVAEASMRLGKQLA 206
+ E +R+ K+LA
Sbjct: 184 SQVFWPGTFTQEVMVRI-KELA 204
>pdb|3QMJ|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase Echa8_6 From
Mycobacterium Marinum
Length = 256
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 68/177 (38%), Gaps = 13/177 (7%)
Query: 28 PSAIDSILSAIAQAKAEATPGSA-------FITTSHGKFFSNGFDLAWAQAAGSRTGARE 80
P A+++ A+ A A+A +A + T G+ FS G DLA QA + E
Sbjct: 24 PEALNAFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSE 83
Query: 81 RVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEVD 140
FR L+ A+ P P + D M L
Sbjct: 84 GKF----GFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMS-STARLKCPFTS 138
Query: 141 IGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197
+G+ + L + VG A +L+ ++ I EEALRMGLV EE + EA
Sbjct: 139 LGVAPEAASSYLLPQLVGRQNAAW-LLMSSEWIDAEEALRMGLVWRICSPEELLPEA 194
>pdb|2IEX|A Chain A, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|B Chain B, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
pdb|2IEX|C Chain C, Crystal Structure Of Dihydroxynapthoic Acid Synthetase
(Gk2873) From Geobacillus Kaustophilus Hta426
Length = 272
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/209 (19%), Positives = 80/209 (38%), Gaps = 13/209 (6%)
Query: 9 DVFVLTLTGSSNVDEHR------LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSN 62
D+ T G + + +R P ++ ++ A +A+ ++ G +T + GK F +
Sbjct: 13 DIIYETYNGIAKITINRPEVHNAFRPKTVNEMIDAFTKARDDSNIGVIILTGAGGKAFCS 72
Query: 63 GFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTXXXXXXXXXXXXFILALSH 122
G D + G G E + L+ +P P +L +
Sbjct: 73 GGDQK-VRGHGGYVGEDEIPRLNVLDLQRLIRV---IPKPVIAMVAGYAIGGGHVLHVVC 128
Query: 123 DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMG 182
D + + D + + +G Y A VG AR ++ ++ +EAL MG
Sbjct: 129 D-LTIAADNAIFGQTGPKVGSFDGGYGAGYLARIVGHKKAR-EIWYLCRQYTAQEALEMG 186
Query: 183 LVEAAYDSEERVAEASMRLGKQLAGRKCT 211
LV E+ + E +++ +++ + T
Sbjct: 187 LVNKVVPLEQ-LEEETVKWAQEILEKSPT 214
>pdb|2F6Q|A Chain A, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
pdb|2F6Q|B Chain B, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
pdb|2F6Q|C Chain C, The Crystal Structure Of Human Peroxisomal Delta3, Delta2
Enoyl Coa Isomerase (Peci)
Length = 280
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 5/166 (3%)
Query: 38 IAQAKAEATPGSAFIT--TSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAA 95
I +A A+ + IT T +G ++S+G DL G E+ R V
Sbjct: 58 IXRALKAASKDDSIITVLTGNGDYYSSGNDLTNFTDI-PPGGVEEKAKNNAVLLREFVGC 116
Query: 96 MMDLPMPTXXXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE 155
+D P P L D V D+ + +G + P+ C++
Sbjct: 117 FIDFPKPLIAVVNGPAVGISVTLLGLFD-AVYASDRATFHTPFSHLGQS-PEGCSSYTFP 174
Query: 156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL 201
K+ S + L+ KK+ EA GLV + E RL
Sbjct: 175 KIXSPAKATEXLIFGKKLTAGEACAQGLVTEVFPDSTFQKEVWTRL 220
>pdb|3PEA|A Chain A, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|B Chain B, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|C Chain C, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|D Chain D, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|E Chain E, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
pdb|3PEA|F Chain F, Crystal Structure Of Enoyl-Coa Hydratase From Bacillus
Anthracis Str. 'ames Ancestor'
Length = 261
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 134 LYMSEVDIGLTLPDYCAAL-FREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEE 192
L + E+ +GL +P + VG A A + L + I G EAL+ GLV + +EE
Sbjct: 131 LGLPELTLGL-IPGFAGTQRLPRYVGKAKAC-EXXLTSTPITGAEALKWGLVNGVF-AEE 187
Query: 193 RVAEASMRLGKQLAGR 208
+ ++++ KQ+AG+
Sbjct: 188 TFLDDTLKVAKQIAGK 203
>pdb|3SLL|A Chain A, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|B Chain B, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|C Chain C, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|D Chain D, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|E Chain E, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
pdb|3SLL|F Chain F, Crystal Structure Of A Probable Enoyl-Coa
HydrataseISOMERASE FROM Mycobacterium Abscessus
Length = 290
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 12/164 (7%)
Query: 50 AFITTSHGKFFSNGFDLAWAQAAGS--RTGARERVHYMFKSFRPLVAAMMDL---PMPTX 104
A + T GK F +G D ++AG G + +S L ++ L P
Sbjct: 71 AVVITGAGKGFCSGAD---QKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQPVI 127
Query: 105 XXXXXXXXXXXFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGSATAR 163
LAL+ D V +D + ++ GLT + + L +G++ A
Sbjct: 128 AAINGAAIGGGLCLALACDVRVASQD-AYFRAAGINNGLTASELGLSYLLPRAIGTSRAS 186
Query: 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207
D++L + + +EA R+GLV SE + E +G+++AG
Sbjct: 187 -DIMLTGRDVDADEAERIGLVSRKVASES-LLEECYAIGERIAG 228
>pdb|3QRE|A Chain A, Crystal Structure Of An Enoyl-Coa Hydratase Echa12_1 From
Mycobacterium Marinum
Length = 298
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 165 DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224
D+LL + EEA ++GLV+ E+ + A + + +A R C+ A I++ +Y
Sbjct: 193 DLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRA-LEYAEDIA-RYCSPSSMAVIKRQVYG 250
Query: 225 D 225
D
Sbjct: 251 D 251
>pdb|1UM0|A Chain A, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|B Chain B, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|C Chain C, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UM0|D Chain D, Crystal Structure Of Chorismate Synthase Complexed With
Fmn
pdb|1UMF|A Chain A, Crystal Structure Of Chorismate Synthase
pdb|1UMF|B Chain B, Crystal Structure Of Chorismate Synthase
pdb|1UMF|C Chain C, Crystal Structure Of Chorismate Synthase
pdb|1UMF|D Chain D, Crystal Structure Of Chorismate Synthase
Length = 365
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 167 LLRAKKIKGEEALRMGLVEAAYDS-EERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225
L+RA+ IK + L +GL + Y + ++AEA M L A G + ++ S Y D
Sbjct: 205 LIRARSIKTNQKLPIGLGQGLYAKLDAKIAEAMMGLNGVKAVEIGKGVESSLLKGSEYND 264
Query: 226 LCGVLGLDIKAVFSN 240
L +D K SN
Sbjct: 265 L-----MDQKGFLSN 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,124,322
Number of Sequences: 62578
Number of extensions: 206902
Number of successful extensions: 519
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 506
Number of HSP's gapped (non-prelim): 26
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)