Query 026137
Match_columns 243
No_of_seqs 157 out of 1310
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08139 enoyl-CoA hydratase; 100.0 1.1E-50 2.5E-55 343.3 24.2 214 1-227 12-225 (266)
2 PLN02267 enoyl-CoA hydratase/i 100.0 4.9E-50 1.1E-54 334.2 27.3 225 1-232 1-226 (239)
3 PRK05980 enoyl-CoA hydratase; 100.0 3.9E-50 8.5E-55 339.3 24.6 216 2-227 5-222 (260)
4 PRK09120 p-hydroxycinnamoyl Co 100.0 5.1E-50 1.1E-54 340.7 24.8 217 2-228 10-227 (275)
5 PRK09674 enoyl-CoA hydratase-i 100.0 6E-50 1.3E-54 337.1 23.9 210 1-226 3-213 (255)
6 PRK06190 enoyl-CoA hydratase; 100.0 6.8E-50 1.5E-54 336.7 23.9 212 1-228 5-217 (258)
7 PRK08150 enoyl-CoA hydratase; 100.0 9.1E-50 2E-54 335.8 24.4 210 1-226 3-213 (255)
8 PRK06142 enoyl-CoA hydratase; 100.0 9E-50 2E-54 339.1 24.5 219 2-228 8-233 (272)
9 PRK05995 enoyl-CoA hydratase; 100.0 8.7E-50 1.9E-54 337.6 23.9 214 2-226 6-219 (262)
10 PRK05862 enoyl-CoA hydratase; 100.0 8.9E-50 1.9E-54 336.5 23.8 210 2-227 6-216 (257)
11 TIGR03210 badI 2-ketocyclohexa 100.0 6.7E-50 1.5E-54 336.9 22.9 210 2-225 4-214 (256)
12 PRK07260 enoyl-CoA hydratase; 100.0 1.2E-49 2.6E-54 335.4 24.3 217 2-228 4-221 (255)
13 PRK06143 enoyl-CoA hydratase; 100.0 1.1E-49 2.4E-54 335.5 24.1 210 3-226 9-220 (256)
14 TIGR02280 PaaB1 phenylacetate 100.0 1.3E-49 2.8E-54 335.4 24.4 214 2-227 1-215 (256)
15 PRK05674 gamma-carboxygeranoyl 100.0 7.7E-50 1.7E-54 338.1 22.5 215 2-227 7-222 (265)
16 PRK06144 enoyl-CoA hydratase; 100.0 1.7E-49 3.6E-54 335.6 23.9 213 2-227 10-225 (262)
17 PRK06563 enoyl-CoA hydratase; 100.0 1.4E-49 3.1E-54 335.0 23.0 211 2-226 1-213 (255)
18 PRK08258 enoyl-CoA hydratase; 100.0 2.6E-49 5.7E-54 336.9 24.8 218 2-228 19-237 (277)
19 PRK06127 enoyl-CoA hydratase; 100.0 2.8E-49 6.1E-54 335.4 24.9 215 2-228 13-229 (269)
20 PRK05869 enoyl-CoA hydratase; 100.0 2.3E-49 5.1E-54 326.7 23.5 205 7-226 15-220 (222)
21 PRK08140 enoyl-CoA hydratase; 100.0 3.1E-49 6.6E-54 334.2 24.7 216 2-228 6-222 (262)
22 KOG1680 Enoyl-CoA hydratase [L 100.0 1.6E-50 3.5E-55 330.2 16.1 213 3-231 40-253 (290)
23 PRK09245 enoyl-CoA hydratase; 100.0 2.8E-49 6E-54 335.2 23.7 218 1-227 4-225 (266)
24 PRK07658 enoyl-CoA hydratase; 100.0 4.2E-49 9.2E-54 332.5 24.3 211 2-226 4-215 (257)
25 PRK09076 enoyl-CoA hydratase; 100.0 5.3E-49 1.1E-53 331.9 24.7 210 2-226 5-216 (258)
26 PRK07327 enoyl-CoA hydratase; 100.0 3.3E-49 7.2E-54 334.8 23.5 212 2-225 13-226 (268)
27 PRK08138 enoyl-CoA hydratase; 100.0 4.1E-49 8.8E-54 333.2 23.7 209 2-226 9-219 (261)
28 TIGR01929 menB naphthoate synt 100.0 3E-49 6.4E-54 333.5 22.8 211 2-225 4-217 (259)
29 PRK06023 enoyl-CoA hydratase; 100.0 5.7E-49 1.2E-53 330.5 24.0 209 2-225 5-217 (251)
30 PLN02664 enoyl-CoA hydratase/d 100.0 4.5E-49 9.7E-54 335.2 23.6 216 3-226 11-233 (275)
31 PRK07511 enoyl-CoA hydratase; 100.0 6.2E-49 1.3E-53 332.0 24.3 214 2-226 5-219 (260)
32 PF00378 ECH: Enoyl-CoA hydrat 100.0 2.9E-49 6.4E-54 331.4 21.4 215 3-231 1-216 (245)
33 PRK07110 polyketide biosynthes 100.0 9.6E-49 2.1E-53 328.6 24.1 213 2-231 7-220 (249)
34 PRK06688 enoyl-CoA hydratase; 100.0 9.3E-49 2E-53 330.9 24.0 212 2-228 7-219 (259)
35 PRK08252 enoyl-CoA hydratase; 100.0 7.2E-49 1.6E-53 330.4 23.2 207 2-226 5-212 (254)
36 PRK07468 enoyl-CoA hydratase; 100.0 9.4E-49 2E-53 331.1 23.9 213 2-225 6-219 (262)
37 PRK06213 enoyl-CoA hydratase; 100.0 2.4E-48 5.3E-53 322.6 25.7 219 1-235 4-222 (229)
38 PRK05809 3-hydroxybutyryl-CoA 100.0 1.4E-48 2.9E-53 329.9 24.6 212 2-227 6-219 (260)
39 PRK07657 enoyl-CoA hydratase; 100.0 1.3E-48 2.7E-53 330.1 23.9 212 2-227 5-219 (260)
40 PRK07799 enoyl-CoA hydratase; 100.0 9.7E-49 2.1E-53 331.3 23.2 214 1-226 6-221 (263)
41 PRK07659 enoyl-CoA hydratase; 100.0 1.4E-48 3E-53 329.7 24.0 212 2-228 8-220 (260)
42 PLN02600 enoyl-CoA hydratase 100.0 1.5E-48 3.2E-53 327.9 23.8 206 7-226 2-209 (251)
43 PRK05864 enoyl-CoA hydratase; 100.0 1.3E-48 2.7E-53 332.6 22.8 216 2-225 11-230 (276)
44 PRK05870 enoyl-CoA hydratase; 100.0 1.1E-48 2.5E-53 328.3 22.2 210 2-227 5-215 (249)
45 PRK06494 enoyl-CoA hydratase; 100.0 1.6E-48 3.4E-53 329.2 23.0 208 2-226 6-215 (259)
46 PRK08259 enoyl-CoA hydratase; 100.0 1.4E-48 3E-53 328.5 22.4 208 2-225 5-213 (254)
47 PLN02888 enoyl-CoA hydratase 100.0 2.7E-48 5.8E-53 328.5 23.8 209 2-227 11-221 (265)
48 PRK03580 carnitinyl-CoA dehydr 100.0 2.1E-48 4.6E-53 328.8 22.9 209 2-226 5-215 (261)
49 PRK05981 enoyl-CoA hydratase; 100.0 3.4E-48 7.3E-53 328.5 23.8 217 2-227 6-225 (266)
50 PRK07938 enoyl-CoA hydratase; 100.0 2.9E-48 6.3E-53 325.6 22.9 207 4-226 6-212 (249)
51 PRK07396 dihydroxynaphthoic ac 100.0 2.7E-48 5.9E-53 330.0 22.9 211 2-225 15-227 (273)
52 PRK06495 enoyl-CoA hydratase; 100.0 4.5E-48 9.7E-53 326.1 24.0 209 2-225 6-214 (257)
53 PRK11423 methylmalonyl-CoA dec 100.0 2.9E-48 6.2E-53 327.8 22.8 208 2-225 6-216 (261)
54 PLN03214 probable enoyl-CoA hy 100.0 9.6E-48 2.1E-52 327.0 25.7 218 2-231 13-234 (278)
55 TIGR03189 dienoyl_CoA_hyt cycl 100.0 5E-48 1.1E-52 324.5 23.1 207 2-228 3-210 (251)
56 COG1024 CaiD Enoyl-CoA hydrata 100.0 5.4E-48 1.2E-52 325.7 23.2 214 2-228 7-221 (257)
57 PRK08260 enoyl-CoA hydratase; 100.0 5.3E-48 1.2E-52 331.7 23.2 215 2-225 6-234 (296)
58 PRK06210 enoyl-CoA hydratase; 100.0 6.7E-48 1.4E-52 327.7 23.0 218 2-228 7-232 (272)
59 PRK08290 enoyl-CoA hydratase; 100.0 1.1E-47 2.5E-52 328.1 24.2 216 2-227 6-238 (288)
60 PRK06072 enoyl-CoA hydratase; 100.0 1.4E-47 3.1E-52 321.3 24.4 208 1-229 1-209 (248)
61 PRK07509 enoyl-CoA hydratase; 100.0 3.3E-47 7.2E-52 321.9 24.6 213 2-227 5-222 (262)
62 PRK07854 enoyl-CoA hydratase; 100.0 2.7E-47 5.9E-52 318.7 22.3 200 1-224 1-201 (243)
63 PLN02921 naphthoate synthase 100.0 5E-47 1.1E-51 328.1 24.2 212 2-225 67-281 (327)
64 PRK08272 enoyl-CoA hydratase; 100.0 5.1E-47 1.1E-51 326.5 23.9 216 2-228 12-247 (302)
65 PRK07827 enoyl-CoA hydratase; 100.0 4.2E-47 9.2E-52 320.8 22.5 215 2-230 8-223 (260)
66 PRK08321 naphthoate synthase; 100.0 1.2E-46 2.6E-51 323.7 23.9 216 2-225 25-256 (302)
67 PRK07112 polyketide biosynthes 100.0 2.1E-46 4.5E-51 315.6 23.7 208 2-225 6-213 (255)
68 PRK12478 enoyl-CoA hydratase; 100.0 3.1E-46 6.8E-51 320.5 22.7 214 2-227 7-231 (298)
69 PRK08788 enoyl-CoA hydratase; 100.0 9.7E-46 2.1E-50 314.7 25.0 214 2-224 19-242 (287)
70 PRK05617 3-hydroxyisobutyryl-C 100.0 5.7E-46 1.2E-50 324.2 20.3 214 2-226 5-282 (342)
71 PLN02157 3-hydroxyisobutyryl-C 100.0 4E-45 8.7E-50 322.5 23.3 212 2-225 39-251 (401)
72 PLN02874 3-hydroxyisobutyryl-C 100.0 1.1E-44 2.4E-49 319.7 22.9 211 2-225 13-291 (379)
73 TIGR03200 dearomat_oah 6-oxocy 100.0 1E-43 2.2E-48 305.5 24.4 208 8-224 34-257 (360)
74 KOG1681 Enoyl-CoA isomerase [L 100.0 9.5E-45 2.1E-49 287.7 12.2 228 7-241 29-266 (292)
75 TIGR03222 benzo_boxC benzoyl-C 100.0 2.2E-43 4.7E-48 321.5 22.5 216 3-232 261-504 (546)
76 PRK08184 benzoyl-CoA-dihydrodi 100.0 2.2E-43 4.7E-48 322.5 22.1 216 3-232 265-508 (550)
77 PLN02988 3-hydroxyisobutyryl-C 100.0 3.3E-43 7.1E-48 309.3 22.4 211 2-224 11-222 (381)
78 PRK11730 fadB multifunctional 100.0 1.9E-42 4.1E-47 327.3 24.7 198 2-208 8-207 (715)
79 cd06558 crotonase-like Crotona 100.0 7E-42 1.5E-46 277.1 21.8 195 2-205 1-195 (195)
80 PRK11154 fadJ multifunctional 100.0 1.5E-41 3.2E-46 321.1 24.9 192 3-204 8-204 (708)
81 TIGR02440 FadJ fatty oxidation 100.0 1.8E-41 3.8E-46 320.0 24.0 190 4-203 5-198 (699)
82 PLN02851 3-hydroxyisobutyryl-C 100.0 2.3E-41 4.9E-46 298.5 23.1 196 2-207 44-240 (407)
83 KOG1679 Enoyl-CoA hydratase [L 100.0 2.1E-42 4.6E-47 272.1 14.6 210 6-228 37-251 (291)
84 TIGR02437 FadB fatty oxidation 100.0 6.2E-41 1.4E-45 316.4 23.0 197 2-207 8-206 (714)
85 TIGR02441 fa_ox_alpha_mit fatt 100.0 2E-40 4.4E-45 313.6 23.5 199 2-208 15-228 (737)
86 KOG0016 Enoyl-CoA hydratase/is 100.0 5.9E-40 1.3E-44 265.8 19.7 222 2-232 9-234 (266)
87 TIGR03222 benzo_boxC benzoyl-C 100.0 6.8E-40 1.5E-44 298.6 22.4 203 2-209 13-230 (546)
88 PRK08184 benzoyl-CoA-dihydrodi 100.0 3.4E-39 7.5E-44 294.9 22.8 202 2-209 17-234 (550)
89 COG0447 MenB Dihydroxynaphthoi 100.0 6.1E-40 1.3E-44 258.6 11.0 219 2-231 20-242 (282)
90 KOG1682 Enoyl-CoA isomerase [L 100.0 4.8E-35 1E-39 229.0 15.9 211 4-227 36-246 (287)
91 KOG1684 Enoyl-CoA hydratase [L 100.0 2.2E-30 4.8E-35 218.4 13.8 185 2-194 40-225 (401)
92 cd07020 Clp_protease_NfeD_1 No 99.9 2E-21 4.2E-26 156.4 14.8 152 10-197 1-172 (187)
93 cd07014 S49_SppA Signal peptid 99.8 1.3E-20 2.8E-25 150.4 12.8 143 29-196 22-174 (177)
94 cd07019 S49_SppA_1 Signal pept 99.7 1.2E-17 2.6E-22 136.8 8.9 161 9-195 1-207 (211)
95 cd00394 Clp_protease_like Case 99.7 4E-16 8.8E-21 122.5 11.9 135 26-187 8-161 (161)
96 cd07023 S49_Sppa_N_C Signal pe 99.7 7.9E-16 1.7E-20 125.9 11.4 149 10-190 2-200 (208)
97 cd07022 S49_Sppa_36K_type Sign 99.7 2E-15 4.4E-20 124.0 13.0 145 22-194 17-209 (214)
98 TIGR00705 SppA_67K signal pept 99.6 3.4E-15 7.4E-20 138.8 10.9 173 6-208 306-524 (584)
99 cd07016 S14_ClpP_1 Caseinolyti 99.6 7.7E-15 1.7E-19 115.2 10.2 129 29-187 15-160 (160)
100 TIGR00706 SppA_dom signal pept 99.6 1.5E-14 3.3E-19 118.2 11.8 154 10-200 2-204 (207)
101 cd07021 Clp_protease_NfeD_like 99.5 4.1E-13 8.9E-18 106.9 13.5 152 10-196 1-177 (178)
102 cd07018 S49_SppA_67K_type Sign 99.4 1.6E-12 3.5E-17 107.3 11.5 145 26-197 26-219 (222)
103 cd07015 Clp_protease_NfeD Nodu 99.3 3E-10 6.5E-15 89.7 14.8 151 11-196 2-171 (172)
104 KOG1683 Hydroxyacyl-CoA dehydr 99.1 6.1E-11 1.3E-15 101.8 3.3 187 9-206 66-257 (380)
105 cd07013 S14_ClpP Caseinolytic 99.0 1.1E-08 2.3E-13 80.5 13.3 135 26-187 9-162 (162)
106 PRK10949 protease 4; Provision 99.0 7.8E-09 1.7E-13 96.7 13.5 169 7-208 325-542 (618)
107 PRK12553 ATP-dependent Clp pro 98.9 3.4E-08 7.4E-13 80.6 14.1 142 26-194 44-206 (207)
108 PRK00277 clpP ATP-dependent Cl 98.9 1.2E-08 2.6E-13 82.9 11.0 138 26-190 40-196 (200)
109 PRK14512 ATP-dependent Clp pro 98.9 1.3E-07 2.8E-12 76.6 14.7 143 26-196 32-194 (197)
110 cd07017 S14_ClpP_2 Caseinolyti 98.8 8.4E-08 1.8E-12 76.1 12.7 142 12-187 11-171 (171)
111 PRK11778 putative inner membra 98.8 8.1E-08 1.8E-12 83.1 12.9 163 7-199 89-294 (330)
112 PRK12319 acetyl-CoA carboxylas 98.8 8.2E-07 1.8E-11 74.5 17.6 138 24-190 77-214 (256)
113 COG0616 SppA Periplasmic serin 98.7 1.3E-07 2.7E-12 82.2 10.9 163 9-200 60-271 (317)
114 PF00574 CLP_protease: Clp pro 98.7 8.4E-08 1.8E-12 76.8 9.1 143 12-190 18-181 (182)
115 CHL00198 accA acetyl-CoA carbo 98.6 5.9E-06 1.3E-10 71.1 17.7 137 25-190 134-270 (322)
116 PRK05724 acetyl-CoA carboxylas 98.6 1.5E-05 3.2E-10 68.7 19.6 137 25-190 131-267 (319)
117 CHL00028 clpP ATP-dependent Cl 98.6 2.9E-06 6.2E-11 68.8 14.2 138 26-190 39-196 (200)
118 TIGR00493 clpP ATP-dependent C 98.6 2E-06 4.3E-11 69.4 13.3 144 12-189 28-190 (191)
119 PLN03230 acetyl-coenzyme A car 98.6 1.1E-05 2.5E-10 71.2 18.5 137 24-190 200-337 (431)
120 TIGR00513 accA acetyl-CoA carb 98.5 3.3E-05 7.1E-10 66.5 19.4 138 24-190 130-267 (316)
121 PLN03229 acetyl-coenzyme A car 98.5 3.8E-05 8.1E-10 72.1 20.0 137 25-190 222-358 (762)
122 PRK12551 ATP-dependent Clp pro 98.4 2.1E-05 4.6E-10 63.5 14.1 138 26-190 34-190 (196)
123 PRK14514 ATP-dependent Clp pro 98.3 1.8E-05 4E-10 64.9 13.4 135 26-190 63-219 (221)
124 PF01343 Peptidase_S49: Peptid 98.2 4.2E-07 9E-12 70.8 1.1 102 96-201 2-150 (154)
125 COG1030 NfeD Membrane-bound se 98.2 7.2E-05 1.6E-09 66.5 15.0 156 7-197 25-195 (436)
126 PRK14513 ATP-dependent Clp pro 98.2 6.1E-05 1.3E-09 61.0 13.4 136 26-190 36-192 (201)
127 TIGR03133 malonate_beta malona 98.2 0.00044 9.6E-09 58.6 18.8 139 23-191 72-218 (274)
128 PRK05654 acetyl-CoA carboxylas 98.1 0.00067 1.4E-08 58.2 18.4 163 8-208 120-283 (292)
129 PF01972 SDH_sah: Serine dehyd 98.1 5.2E-05 1.1E-09 63.4 11.2 164 24-220 70-238 (285)
130 TIGR00515 accD acetyl-CoA carb 98.1 0.00049 1.1E-08 58.8 17.2 148 23-207 133-281 (285)
131 PRK07189 malonate decarboxylas 98.1 0.0012 2.7E-08 56.6 19.2 176 23-231 81-264 (301)
132 TIGR01117 mmdA methylmalonyl-C 98.0 0.00092 2E-08 61.8 18.9 170 11-207 317-497 (512)
133 TIGR00705 SppA_67K signal pept 98.0 0.00015 3.3E-09 68.1 13.7 107 7-136 41-160 (584)
134 TIGR03134 malonate_gamma malon 98.0 0.0016 3.4E-08 54.3 17.6 153 8-192 31-191 (238)
135 COG0740 ClpP Protease subunit 97.9 0.00039 8.4E-09 55.9 13.1 141 13-190 30-192 (200)
136 PRK12552 ATP-dependent Clp pro 97.8 0.00081 1.8E-08 55.2 13.5 142 27-190 50-214 (222)
137 CHL00174 accD acetyl-CoA carbo 97.7 0.0044 9.6E-08 52.9 16.8 145 23-204 146-292 (296)
138 PRK10949 protease 4; Provision 97.7 0.00049 1.1E-08 64.9 11.9 84 30-136 96-179 (618)
139 PF01039 Carboxyl_trans: Carbo 97.6 0.0015 3.3E-08 60.3 13.5 143 23-206 70-221 (493)
140 PLN02820 3-methylcrotonyl-CoA 97.5 0.011 2.3E-07 55.4 18.0 144 22-205 141-294 (569)
141 TIGR01117 mmdA methylmalonyl-C 97.5 0.0057 1.2E-07 56.7 15.2 149 23-207 95-245 (512)
142 COG0777 AccD Acetyl-CoA carbox 96.9 0.038 8.3E-07 46.4 13.3 150 23-209 135-285 (294)
143 COG0825 AccA Acetyl-CoA carbox 96.9 0.024 5.2E-07 48.0 12.0 136 27-191 132-267 (317)
144 PLN02820 3-methylcrotonyl-CoA 96.8 0.11 2.4E-06 48.7 17.0 157 25-208 381-557 (569)
145 PF01039 Carboxyl_trans: Carbo 96.4 0.057 1.2E-06 50.0 11.8 167 13-208 298-481 (493)
146 KOG0840 ATP-dependent Clp prot 95.9 0.089 1.9E-06 43.8 9.5 133 26-190 101-257 (275)
147 COG4799 Acetyl-CoA carboxylase 95.1 0.25 5.4E-06 45.6 10.4 143 22-205 103-252 (526)
148 COG4799 Acetyl-CoA carboxylase 92.1 4.7 0.0001 37.5 13.1 167 13-208 328-511 (526)
149 PF02601 Exonuc_VII_L: Exonucl 88.1 1.6 3.4E-05 38.0 6.4 80 27-130 53-135 (319)
150 PF06833 MdcE: Malonate decarb 86.1 7.2 0.00016 32.4 8.7 97 82-189 87-186 (234)
151 KOG0540 3-Methylcrotonyl-CoA c 85.9 17 0.00037 33.1 11.4 154 24-209 363-525 (536)
152 TIGR00237 xseA exodeoxyribonuc 85.7 2.8 6E-05 38.2 6.8 80 27-130 168-247 (432)
153 PRK00286 xseA exodeoxyribonucl 80.0 5.4 0.00012 36.3 6.4 79 27-130 174-252 (438)
154 smart00250 PLEC Plectin repeat 77.4 1.7 3.6E-05 25.1 1.5 19 168-186 17-35 (38)
155 COG1570 XseA Exonuclease VII, 77.2 7.6 0.00016 35.3 6.3 77 28-130 175-253 (440)
156 PF01740 STAS: STAS domain; I 75.7 11 0.00025 27.0 6.0 47 1-55 1-55 (117)
157 PF00681 Plectin: Plectin repe 74.1 1.2 2.6E-05 26.8 0.3 21 168-188 17-37 (45)
158 COG0074 SucD Succinyl-CoA synt 73.0 15 0.00032 31.5 6.6 53 34-112 188-240 (293)
159 TIGR02886 spore_II_AA anti-sig 70.2 32 0.0007 24.1 7.2 48 2-57 1-48 (106)
160 TIGR00377 ant_ant_sig anti-ant 68.5 22 0.00048 24.9 6.1 48 2-57 5-52 (108)
161 PF06258 Mito_fiss_Elm1: Mitoc 67.7 70 0.0015 27.8 10.0 110 22-132 121-239 (311)
162 PF13607 Succ_CoA_lig: Succiny 67.7 8.6 0.00019 29.2 3.8 52 33-111 41-92 (138)
163 PF00549 Ligase_CoA: CoA-ligas 61.9 18 0.0004 28.0 4.7 63 32-113 59-121 (153)
164 smart00870 Asparaginase Aspara 59.9 37 0.00081 29.6 6.9 32 26-57 57-88 (323)
165 PTZ00187 succinyl-CoA syntheta 59.5 36 0.00079 29.7 6.6 53 34-112 212-264 (317)
166 COG0252 AnsB L-asparaginase/ar 57.7 52 0.0011 29.2 7.3 33 24-56 78-110 (351)
167 COG3660 Predicted nucleoside-d 55.6 1.3E+02 0.0029 25.7 10.9 116 12-132 131-255 (329)
168 KOG3997 Major apurinic/apyrimi 54.8 28 0.0006 28.8 4.7 56 7-68 137-192 (281)
169 PLN02522 ATP citrate (pro-S)-l 52.0 51 0.0011 31.5 6.7 52 34-112 210-262 (608)
170 TIGR00520 asnASE_II L-asparagi 49.8 1.2E+02 0.0027 26.8 8.5 33 25-57 84-116 (349)
171 cd07043 STAS_anti-anti-sigma_f 48.8 67 0.0015 21.7 5.6 46 3-57 2-47 (99)
172 PF01990 ATP-synt_F: ATP synth 48.3 87 0.0019 21.7 6.1 52 31-111 27-79 (95)
173 cd06844 STAS Sulphate Transpor 46.8 75 0.0016 22.0 5.6 46 3-56 2-47 (100)
174 PRK11096 ansB L-asparaginase I 42.4 1.9E+02 0.004 25.6 8.4 30 25-56 81-110 (347)
175 PRK09461 ansA cytoplasmic aspa 42.0 1.3E+02 0.0028 26.4 7.4 32 24-57 61-92 (335)
176 TIGR02717 AcCoA-syn-alpha acet 41.0 48 0.001 30.4 4.7 53 33-112 190-242 (447)
177 cd04241 AAK_FomA-like AAK_FomA 38.6 1.1E+02 0.0024 25.3 6.3 48 1-58 1-48 (252)
178 PRK06091 membrane protein FdrA 37.4 1.1E+02 0.0025 28.9 6.5 22 91-112 270-291 (555)
179 PF11524 SeleniumBinding: Sele 37.0 18 0.00038 24.4 0.9 40 168-207 10-49 (81)
180 COG1105 FruK Fructose-1-phosph 36.8 2.9E+02 0.0062 24.1 8.6 66 25-116 110-175 (310)
181 PRK02228 V-type ATP synthase s 35.4 1.6E+02 0.0035 20.8 6.6 49 32-109 30-79 (100)
182 PF00710 Asparaginase: Asparag 35.4 1.4E+02 0.003 25.9 6.5 31 25-57 53-83 (313)
183 PF05582 Peptidase_U57: YabG p 35.1 1.3E+02 0.0029 25.7 6.1 71 28-112 140-210 (287)
184 PRK04183 glutamyl-tRNA(Gln) am 33.9 1.6E+02 0.0035 26.8 6.8 31 26-57 133-163 (419)
185 COG1126 GlnQ ABC-type polar am 33.1 1.2E+02 0.0027 25.1 5.4 37 13-55 158-194 (240)
186 TIGR02153 gatD_arch glutamyl-t 33.1 2E+02 0.0043 26.1 7.2 31 26-57 120-150 (404)
187 COG4981 Enoyl reductase domain 32.3 4.5E+02 0.0098 25.1 10.0 153 28-208 158-342 (717)
188 cd07560 Peptidase_S41_CPP C-te 32.3 1.2E+02 0.0027 24.5 5.4 98 10-121 50-152 (211)
189 TIGR02855 spore_yabG sporulati 32.1 1.6E+02 0.0035 25.2 6.0 77 29-120 140-216 (283)
190 cd03255 ABC_MJ0796_Lo1CDE_FtsE 31.7 1.4E+02 0.0031 23.8 5.7 39 12-55 161-199 (218)
191 KOG3179 Predicted glutamine sy 31.2 1.1E+02 0.0023 25.1 4.6 25 87-111 80-104 (245)
192 cd03225 ABC_cobalt_CbiO_domain 31.0 1.4E+02 0.0031 23.6 5.6 38 12-55 155-192 (211)
193 smart00463 SMR Small MutS-rela 31.0 1.1E+02 0.0025 20.2 4.3 31 28-59 12-43 (80)
194 TIGR00519 asnASE_I L-asparagin 30.0 2.2E+02 0.0048 25.0 6.9 30 26-57 59-88 (336)
195 PRK10584 putative ABC transpor 28.7 1.6E+02 0.0036 23.6 5.7 39 12-55 167-205 (228)
196 PRK13540 cytochrome c biogenes 28.6 2.2E+02 0.0048 22.4 6.3 49 12-67 148-196 (200)
197 cd03216 ABC_Carb_Monos_I This 28.3 1.8E+02 0.004 22.1 5.6 38 12-55 103-140 (163)
198 cd03298 ABC_ThiQ_thiamine_tran 28.1 1.7E+02 0.0036 23.2 5.5 39 12-55 149-187 (211)
199 TIGR02211 LolD_lipo_ex lipopro 27.9 1.7E+02 0.0037 23.4 5.6 39 12-55 162-200 (221)
200 cd03297 ABC_ModC_molybdenum_tr 27.6 1.7E+02 0.0037 23.3 5.5 39 12-55 152-190 (214)
201 cd03265 ABC_DrrA DrrA is the A 27.6 1.8E+02 0.0038 23.3 5.6 39 12-55 152-190 (220)
202 TIGR01277 thiQ thiamine ABC tr 27.5 1.8E+02 0.004 23.1 5.7 39 12-55 149-187 (213)
203 cd03267 ABC_NatA_like Similar 27.2 1.9E+02 0.0041 23.6 5.8 39 12-55 174-212 (236)
204 cd03257 ABC_NikE_OppD_transpor 27.2 1.8E+02 0.0039 23.3 5.6 39 12-55 166-204 (228)
205 cd03293 ABC_NrtD_SsuB_transpor 26.8 1.9E+02 0.0041 23.1 5.7 39 12-55 152-190 (220)
206 cd03300 ABC_PotA_N PotA is an 26.8 1.8E+02 0.004 23.5 5.6 39 12-55 151-189 (232)
207 cd03259 ABC_Carb_Solutes_like 26.6 1.9E+02 0.004 23.0 5.6 39 12-55 151-189 (213)
208 TIGR01184 ntrCD nitrate transp 26.6 1.9E+02 0.0042 23.4 5.7 39 12-55 135-173 (230)
209 PRK11629 lolD lipoprotein tran 26.3 1.9E+02 0.0042 23.4 5.7 39 12-55 166-204 (233)
210 cd03261 ABC_Org_Solvent_Resist 26.1 1.8E+02 0.0039 23.6 5.5 39 12-55 157-195 (235)
211 cd03214 ABC_Iron-Siderophores_ 26.1 2E+02 0.0044 22.2 5.5 39 12-55 118-156 (180)
212 COG1131 CcmA ABC-type multidru 25.9 2.1E+02 0.0046 24.4 6.0 39 12-56 157-195 (293)
213 PF01713 Smr: Smr domain; Int 25.9 1.3E+02 0.0028 20.1 3.8 36 28-64 9-44 (83)
214 PRK10247 putative ABC transpor 25.7 1.9E+02 0.0042 23.3 5.5 40 12-56 158-197 (225)
215 PLN00125 Succinyl-CoA ligase [ 25.7 1.9E+02 0.0042 25.0 5.7 13 100-112 233-245 (300)
216 PRK15112 antimicrobial peptide 25.6 1.8E+02 0.0039 24.2 5.5 39 12-55 170-208 (267)
217 cd07041 STAS_RsbR_RsbS_like Su 25.5 2.4E+02 0.0051 19.6 6.5 44 4-55 5-48 (109)
218 PRK09984 phosphonate/organopho 25.2 1.9E+02 0.004 24.0 5.5 39 12-55 173-211 (262)
219 PRK11831 putative ABC transpor 25.2 1.9E+02 0.0042 24.1 5.6 39 12-55 164-202 (269)
220 cd03235 ABC_Metallic_Cations A 25.2 2.1E+02 0.0045 22.8 5.6 38 12-55 153-190 (213)
221 cd03301 ABC_MalK_N The N-termi 24.8 2.1E+02 0.0046 22.7 5.6 39 12-55 151-189 (213)
222 TIGR03410 urea_trans_UrtE urea 24.6 2.2E+02 0.0048 22.9 5.7 39 12-55 152-190 (230)
223 TIGR00960 3a0501s02 Type II (G 24.6 2.3E+02 0.0049 22.6 5.7 38 12-55 159-196 (216)
224 cd03258 ABC_MetN_methionine_tr 24.1 2.1E+02 0.0046 23.0 5.5 39 12-55 161-199 (233)
225 cd03256 ABC_PhnC_transporter A 24.0 2.1E+02 0.0045 23.2 5.5 39 12-55 165-203 (241)
226 PRK10908 cell division protein 24.0 2.3E+02 0.005 22.7 5.7 38 12-55 158-195 (222)
227 PRK11247 ssuB aliphatic sulfon 23.9 2.2E+02 0.0047 23.7 5.6 39 12-55 154-192 (257)
228 cd03295 ABC_OpuCA_Osmoprotecti 23.7 2.1E+02 0.0045 23.4 5.4 39 12-55 156-194 (242)
229 PRK11248 tauB taurine transpor 23.6 2.2E+02 0.0047 23.6 5.6 39 12-55 149-187 (255)
230 cd03246 ABCC_Protease_Secretio 23.6 2.4E+02 0.0053 21.6 5.5 38 12-55 117-154 (173)
231 PF01738 DLH: Dienelactone hyd 23.5 1.7E+02 0.0037 23.3 4.8 40 85-124 78-119 (218)
232 cd03229 ABC_Class3 This class 23.4 2.5E+02 0.0054 21.7 5.6 39 12-55 121-159 (178)
233 cd03296 ABC_CysA_sulfate_impor 23.4 2.2E+02 0.0048 23.1 5.5 39 12-55 157-195 (239)
234 TIGR02315 ABC_phnC phosphonate 23.3 2.2E+02 0.0047 23.1 5.5 39 12-55 166-204 (243)
235 PRK15093 antimicrobial peptide 23.3 2.1E+02 0.0046 24.8 5.6 39 12-55 179-217 (330)
236 PRK13646 cbiO cobalt transport 23.3 2.1E+02 0.0045 24.2 5.4 39 12-55 166-204 (286)
237 PRK11701 phnK phosphonate C-P 23.2 2.2E+02 0.0047 23.5 5.5 39 12-55 172-210 (258)
238 cd03230 ABC_DR_subfamily_A Thi 23.2 2.4E+02 0.0052 21.6 5.5 38 12-55 116-153 (173)
239 TIGR03864 PQQ_ABC_ATP ABC tran 22.9 2.4E+02 0.0052 22.9 5.6 40 12-56 153-192 (236)
240 TIGR03608 L_ocin_972_ABC putat 22.8 2.5E+02 0.0054 22.1 5.6 38 12-55 155-192 (206)
241 COG2845 Uncharacterized protei 22.8 5E+02 0.011 22.9 7.5 58 40-104 171-230 (354)
242 PRK10253 iron-enterobactin tra 22.5 2.3E+02 0.005 23.5 5.5 40 12-56 164-203 (265)
243 cd03237 ABC_RNaseL_inhibitor_d 22.3 2.4E+02 0.0052 23.3 5.5 39 12-55 136-174 (246)
244 PRK10575 iron-hydroxamate tran 22.2 2.4E+02 0.0051 23.5 5.6 40 12-56 168-207 (265)
245 COG2840 Uncharacterized protei 22.1 2.5E+02 0.0054 22.5 5.2 37 25-64 103-140 (184)
246 PRK11300 livG leucine/isoleuci 22.0 2.6E+02 0.0056 22.9 5.7 39 12-55 174-212 (255)
247 TIGR03005 ectoine_ehuA ectoine 22.0 2.4E+02 0.0053 23.1 5.5 39 12-55 167-205 (252)
248 cd00411 Asparaginase Asparagin 22.0 3E+02 0.0066 23.9 6.3 30 26-57 60-89 (323)
249 TIGR02323 CP_lyasePhnK phospho 21.9 2.5E+02 0.0053 23.1 5.6 39 12-55 169-207 (253)
250 cd07393 MPP_DR1119 Deinococcus 21.8 3.3E+02 0.0071 22.2 6.2 31 23-56 17-50 (232)
251 PRK13634 cbiO cobalt transport 21.7 2.3E+02 0.0051 24.0 5.5 39 12-55 166-204 (290)
252 PRK13505 formate--tetrahydrofo 21.7 1.6E+02 0.0034 27.9 4.5 46 79-124 351-396 (557)
253 cd03226 ABC_cobalt_CbiO_domain 21.4 2.9E+02 0.0062 21.8 5.7 38 12-55 147-184 (205)
254 KOG1255 Succinyl-CoA synthetas 21.4 3.1E+02 0.0067 23.2 5.7 56 33-112 218-274 (329)
255 PRK05778 2-oxoglutarate ferred 21.3 2.8E+02 0.0061 24.0 5.8 30 33-63 75-104 (301)
256 TIGR02324 CP_lyasePhnL phospho 21.3 2.8E+02 0.006 22.2 5.7 38 12-55 170-207 (224)
257 PRK13547 hmuV hemin importer A 21.1 2.5E+02 0.0054 23.6 5.5 41 11-56 174-214 (272)
258 cd03215 ABC_Carb_Monos_II This 21.1 3.1E+02 0.0068 21.2 5.8 38 12-55 125-162 (182)
259 PRK13633 cobalt transporter AT 21.1 2.4E+02 0.0053 23.7 5.5 39 12-55 165-203 (280)
260 TIGR01019 sucCoAalpha succinyl 21.1 1.9E+02 0.0042 24.8 4.8 14 99-112 224-237 (286)
261 TIGR00968 3a0106s01 sulfate AB 21.1 2.7E+02 0.0059 22.6 5.6 39 12-55 151-189 (237)
262 COG0412 Dienelactone hydrolase 21.0 1.6E+02 0.0035 24.3 4.2 41 84-124 91-133 (236)
263 PRK13032 chemotaxis-inhibiting 21.0 3.3E+02 0.0071 19.6 5.5 54 1-58 90-143 (149)
264 cd03238 ABC_UvrA The excision 20.9 3.1E+02 0.0068 21.4 5.6 38 12-55 110-147 (176)
265 COG1618 Predicted nucleotide k 20.9 1.2E+02 0.0027 23.9 3.1 26 86-111 116-141 (179)
266 cd03299 ABC_ModC_like Archeal 20.7 2.8E+02 0.0062 22.5 5.6 39 12-55 150-188 (235)
267 cd03213 ABCG_EPDR ABCG transpo 20.7 3E+02 0.0065 21.6 5.6 38 12-55 132-169 (194)
268 PRK13539 cytochrome c biogenes 20.6 3E+02 0.0065 21.8 5.6 38 12-55 148-185 (207)
269 PRK11866 2-oxoacid ferredoxin 20.5 2.3E+02 0.0051 24.2 5.1 32 32-64 63-94 (279)
270 cd03292 ABC_FtsE_transporter F 20.4 3E+02 0.0064 21.8 5.6 38 12-55 157-194 (214)
271 cd03222 ABC_RNaseL_inhibitor T 20.4 3.3E+02 0.0071 21.4 5.7 39 12-55 92-130 (177)
272 TIGR02982 heterocyst_DevA ABC 20.4 2.9E+02 0.0062 22.1 5.5 39 12-55 162-200 (220)
273 PRK10418 nikD nickel transport 20.3 2.7E+02 0.0059 22.9 5.5 39 12-55 161-199 (254)
274 PRK13645 cbiO cobalt transport 20.3 2.5E+02 0.0055 23.7 5.4 39 12-55 171-209 (289)
275 COG1582 FlgEa Uncharacterized 20.3 1.1E+02 0.0024 19.9 2.3 22 91-112 17-38 (67)
276 PTZ00346 histone deacetylase; 20.2 3.2E+02 0.0069 25.1 6.1 68 26-108 248-315 (429)
277 PRK10419 nikE nickel transport 20.2 2.7E+02 0.0058 23.2 5.5 39 12-55 172-210 (268)
278 PRK13317 pantothenate kinase; 20.2 5.5E+02 0.012 21.8 7.4 15 43-58 44-58 (277)
279 TIGR00555 panK_eukar pantothen 20.1 4.9E+02 0.011 22.3 7.0 41 6-57 19-59 (279)
280 PRK10771 thiQ thiamine transpo 20.1 2.9E+02 0.0063 22.3 5.5 39 12-55 150-188 (232)
281 COG0528 PyrH Uridylate kinase 20.1 2E+02 0.0043 24.0 4.4 33 23-57 22-54 (238)
282 PRK11231 fecE iron-dicitrate t 20.1 2.9E+02 0.0063 22.7 5.6 38 12-55 159-196 (255)
No 1
>PRK08139 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=1.1e-50 Score=343.28 Aligned_cols=214 Identities=23% Similarity=0.310 Sum_probs=194.0
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
++.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++.... . ..
T Consensus 12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~-~~ 84 (266)
T PRK08139 12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAAR---G-LA 84 (266)
T ss_pred ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhccc---c-hh
Confidence 3678889999999999997 889999999999999999999999999 999999999999999999875421 1 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
....+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus 85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~ 161 (266)
T PRK08139 85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R 161 (266)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence 23344556778899999999999999999999999999999999999987 899999999999 68777788999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+ +.++..+|+.+++...
T Consensus 162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 225 (266)
T PRK08139 162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQAE 225 (266)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999998 889999999999999998 9999999999976543
No 2
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=100.00 E-value=4.9e-50 Score=334.19 Aligned_cols=225 Identities=66% Similarity=1.069 Sum_probs=198.6
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
||+++++++|++|+|||| +.|++|.+|+.+|.+++++++.|++++.+||++|.|++||+|.|++++... . .. ..
T Consensus 1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~-~-~~-~~ 74 (239)
T PLN02267 1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA-G-SA-PS 74 (239)
T ss_pred CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc-c-cC-HH
Confidence 789999999999999999 459999999999999999999998875377789999999999999987532 1 11 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++++|++||+++|+++|++++.++++++| .
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~ 153 (239)
T PLN02267 75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S 153 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence 223345567888999999999999999999999999999999999998655799999999999558888889999999 8
Q ss_pred HHH-HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137 161 TAR-RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL 232 (243)
Q Consensus 161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~ 232 (243)
.++ ++++++|++++|+||+++||||+++++.+++.+++.++|+++++.++.+.++..+|+.++++..+.+..
T Consensus 154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~ 226 (239)
T PLN02267 154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGL 226 (239)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcc
Confidence 888 699999999999999999999999986478999999999999998877899999999999999998775
No 3
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.9e-50 Score=339.34 Aligned_cols=216 Identities=22% Similarity=0.318 Sum_probs=192.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .....
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (260)
T PRK05980 5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV 80 (260)
T ss_pred EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence 678889999999999998 899999999999999999999999999 99999998 79999999998754211 01112
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 157 (260)
T PRK05980 81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG- 157 (260)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence 23345556678889999999999999999999999999999999999987 899999999999 57665 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+ +.+++.+|+.+++...
T Consensus 158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~~ 222 (260)
T PRK05980 158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGLN 222 (260)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 889999999999999998 8899999999876543
No 4
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=100.00 E-value=5.1e-50 Score=340.71 Aligned_cols=217 Identities=16% Similarity=0.217 Sum_probs=192.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... ......
T Consensus 10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 85 (275)
T PRK09120 10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL 85 (275)
T ss_pred EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence 678899999999999998 899999999999999999999999999 9999999999999999998753211 110111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 162 (275)
T PRK09120 86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H 162 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence 2223345677888999999999999999999999999999999999987 899999999999 67766 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++|||++|||+ +++++++.+++++++..+ +.+++.+|+.++.....
T Consensus 163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~ 227 (275)
T PRK09120 163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVREL 227 (275)
T ss_pred HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999997 889999999999999998 99999999999875443
No 5
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=100.00 E-value=6e-50 Score=337.15 Aligned_cols=210 Identities=21% Similarity=0.327 Sum_probs=189.6
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++... +. .
T Consensus 3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~-~- 74 (255)
T PRK09674 3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK---DL-A- 74 (255)
T ss_pred eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc---ch-h-
Confidence 4678889999999999997 889999999999999999999999999 99999999999999999987541 10 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
..+.....+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig- 149 (255)
T PRK09674 75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG- 149 (255)
T ss_pred --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence 112334567888999999999999999999999999999999999987 899999999999 57766 678999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.+++++++..| +.++..+|+.+++..
T Consensus 150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 213 (255)
T PRK09674 150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQSQ 213 (255)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999998 999999999997653
No 6
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.8e-50 Score=336.74 Aligned_cols=212 Identities=22% Similarity=0.330 Sum_probs=191.4
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|++++.... . ..
T Consensus 5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~ 77 (258)
T PRK06190 5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDG---S-AY 77 (258)
T ss_pred eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhccc---c-hh
Confidence 4788999999999999998 899999999999999999999999999 999999999999999999886421 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
.. ...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG- 151 (258)
T PRK06190 78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG- 151 (258)
T ss_pred hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence 11 234567888999999999999999999999999999999999987 899999999999 67765 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+ +.+++.+|+.++.....
T Consensus 152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 217 (258)
T PRK06190 152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGAAA 217 (258)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999997 889999999999999998 99999999999865443
No 7
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.1e-50 Score=335.85 Aligned_cols=210 Identities=17% Similarity=0.226 Sum_probs=188.7
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++||||||+ +.|++|.+|+.+|.++++.++ ++++ +|||||.|++||+|.|++++.... ..
T Consensus 3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~~-----~~ 72 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRERD-----AG 72 (255)
T ss_pred eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhcc-----ch
Confidence 4678899999999999998 899999999999999999997 7899 999999999999999999986421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 149 (255)
T PRK08150 73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG- 149 (255)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence 11233456678889999999999999999999999999999999999987 899999999999 56665 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||++||+ +++.+++.++++++++.+ +.+++.+|+.++...
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 213 (255)
T PRK08150 150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRIA 213 (255)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 889999999999999998 899999999997653
No 8
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9e-50 Score=339.13 Aligned_cols=219 Identities=21% Similarity=0.279 Sum_probs=193.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC------
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR------ 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~------ 75 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++......
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~ 84 (272)
T PRK06142 8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL 84 (272)
T ss_pred EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence 567889999999999998 899999999999999999999999999 99999999999999999987541100
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHH
Q 026137 76 TGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR 154 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~ 154 (243)
.........+...+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 162 (272)
T PRK06142 85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP 162 (272)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence 0001223334556788899999999999999999999999999999999999987 899999999999 57666 57999
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 155 EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
+++| ..++++++++|++++|+||+++||||+|+++.+++++++.++++++++.| +.++..+|+.+++....
T Consensus 163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~ 233 (272)
T PRK06142 163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMRDH 233 (272)
T ss_pred HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence 9999 99999999999999999999999999999865789999999999999998 99999999999866443
No 9
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.7e-50 Score=337.57 Aligned_cols=214 Identities=23% Similarity=0.344 Sum_probs=191.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||+|+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... .. ...
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 80 (262)
T PRK05995 6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YS-DDE 80 (262)
T ss_pred EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cC-chh
Confidence 578889999999999997 899999999999999999999999999 9999999999999999998754211 01 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~ 161 (243)
.......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~ 157 (262)
T PRK05995 81 NRADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER 157 (262)
T ss_pred hhhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence 1112345678889999999999999999999999999999999999987 999999999999 68888888999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+ +.++..+|+.++...
T Consensus 158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 219 (262)
T PRK05995 158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDVA 219 (262)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 99999999999999999999999999997 889999999999999998 999999999997653
No 10
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=8.9e-50 Score=336.55 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=189.0
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++... +. ..
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~- 77 (257)
T PRK05862 6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD- 77 (257)
T ss_pred EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence 677889999999999997 789999999999999999999999999 99999999999999999987642 11 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
.+...+.+++.+|..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK05862 78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K 152 (257)
T ss_pred --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence 12233455778899999999999999999999999999999999987 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+++|+ +++++++.++++++++.+ +.++..+|+.+++.+.
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~ 216 (257)
T PRK05862 153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAYE 216 (257)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999998 899999999999999988 8999999999977543
No 11
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=100.00 E-value=6.7e-50 Score=336.95 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=189.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++... . + ..
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~--~~ 76 (256)
T TIGR03210 4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-D--GR 76 (256)
T ss_pred eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-c--ch
Confidence 678899999999999998 899999999999999999999999999 99999998 799999999987431 1 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|++++++++| .
T Consensus 77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~ 152 (256)
T TIGR03210 77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E 152 (256)
T ss_pred --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence 112234567888999999999999999999999999999999999987 999999999998556677889999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
.+|++++++|++++|+||+++||||+++|+ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~ 214 (256)
T TIGR03210 153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD 214 (256)
T ss_pred HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 889999999999999998 99999999999765
No 12
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.2e-49 Score=335.43 Aligned_cols=217 Identities=22% Similarity=0.314 Sum_probs=193.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ..+...
T Consensus 4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 79 (255)
T PRK07260 4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS 79 (255)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence 567889999999999997 889999999999999999999999999 9999999999999999998864211 111222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (255)
T PRK07260 80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L 156 (255)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence 2234556788889999999999999999999999999999999999987 899999999999 56665 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.+ +.++..+|+.++.....
T Consensus 157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~ 221 (255)
T PRK07260 157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK 221 (255)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 99999999999876544
No 13
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-49 Score=335.50 Aligned_cols=210 Identities=23% Similarity=0.307 Sum_probs=190.2
Q ss_pred eee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 3 TSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 3 ~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
.++ .+++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++... . ..
T Consensus 9 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~~ 80 (256)
T PRK06143 9 GVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATL-D----QA 80 (256)
T ss_pred eeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhc-C----hh
Confidence 445 46899999999998 899999999999999999999999999 99999998 799999999987542 1 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+++++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG-~ 157 (256)
T PRK06143 81 SAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG-W 157 (256)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-H
Confidence 23345566788999999999999999999999999999999999999987 899999999998 67677789999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||++||+ +++.+++.+++++++..| +.+++.+|+.++...
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 220 (256)
T PRK06143 158 ARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREWE 220 (256)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998 899999999999999998 999999999998653
No 14
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=100.00 E-value=1.3e-49 Score=335.36 Aligned_cols=214 Identities=23% Similarity=0.284 Sum_probs=188.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+ ++ +||+||.|++||+|.|++++..... .. ...
T Consensus 1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 74 (256)
T TIGR02280 1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG-GA-PDL 74 (256)
T ss_pred CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc-cc-hhH
Confidence 568899999999999998 899999999999999999999998 99 9999999999999999998764211 00 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~ 151 (256)
T TIGR02280 75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R 151 (256)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence 1122333466788999999999999999999999999999999999988 899999999999 56665 568999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.| +.++..+|+.++....
T Consensus 152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~~ 215 (256)
T TIGR02280 152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAAT 215 (256)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999998 789999999999999998 8999999999986543
No 15
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=100.00 E-value=7.7e-50 Score=338.08 Aligned_cols=215 Identities=21% Similarity=0.287 Sum_probs=190.2
Q ss_pred ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|+++++ ++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++..... .. ..
T Consensus 7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 81 (265)
T PRK05674 7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD-LD-YN 81 (265)
T ss_pred EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc-cc-ch
Confidence 567775 789999999998 899999999999999999999999999 9999999999999999998754211 00 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
........+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| .
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~ 158 (265)
T PRK05674 82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E 158 (265)
T ss_pred hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence 11112234567888999999999999999999999999999999999987 899999999999 68888778999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++|||++|+|+ +++.+++.++++++++.+ +.+++.+|+.++....
T Consensus 159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 222 (265)
T PRK05674 159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGD 222 (265)
T ss_pred HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999997 889999999999999998 9999999999976543
No 16
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.7e-49 Score=335.62 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=191.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++..... ..
T Consensus 10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~ 82 (262)
T PRK06144 10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE 82 (262)
T ss_pred eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence 678899999999999997 889999999999999999999999999 99999998 79999999998765211 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc-cCCCCChhh-HHHHHHHhC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD-IGLTLPDYC-AALFREKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~-~G~~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||++ +|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG 160 (262)
T PRK06144 83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence 22234456778889999999999999999999999999999999999987 899999997 999 56665 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.+ +.++..+|+.++....
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~ 225 (262)
T PRK06144 161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRR 225 (262)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 899999999999999998 9999999999976543
No 17
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-49 Score=334.97 Aligned_cols=211 Identities=23% Similarity=0.300 Sum_probs=185.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++..... +. .
T Consensus 1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 73 (255)
T PRK06563 1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AG-G-- 73 (255)
T ss_pred CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cc-h--
Confidence 568899999999999997 899999999999999999999999999 9999999999999999998754211 11 1
Q ss_pred HHHHHH-HHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 82 VHYMFK-SFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 82 ~~~~~~-~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
..+.. ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 74 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 149 (255)
T PRK06563 74 -FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG- 149 (255)
T ss_pred -hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-
Confidence 11111 1222333588999999999999999999999999999999987 899999999999 67776 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+ +.+++.+|+.++...
T Consensus 150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~ 213 (255)
T PRK06563 150 WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV 213 (255)
T ss_pred HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 889999999999999998 899999999987654
No 18
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.6e-49 Score=336.92 Aligned_cols=218 Identities=20% Similarity=0.200 Sum_probs=192.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... +.....
T Consensus 19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~ 94 (277)
T PRK08258 19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE 94 (277)
T ss_pred eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence 567889999999999998 899999999999999999999999999 9999999999999999998743211 011222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+.+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++| ++++++++| .
T Consensus 95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~ 172 (277)
T PRK08258 95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q 172 (277)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence 3344556678899999999999999999999999999999999999987 899999999999434555 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.| +.+++.+|+.++.....
T Consensus 173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~ 237 (277)
T PRK08258 173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEWDM 237 (277)
T ss_pred HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999997 889999999999999998 99999999999875433
No 19
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-49 Score=335.40 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=192.1
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||+|.| ++||+|.|++++..... + ..
T Consensus 13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~-~--~~ 86 (269)
T PRK06127 13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS-D--AE 86 (269)
T ss_pred eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc-c--hH
Confidence 578889999999999998 899999999999999999999999999 99999998 79999999998764211 1 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~ 159 (243)
....+...++.++.++..+||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++ +++++++++|
T Consensus 87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (269)
T PRK06127 87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG- 163 (269)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence 22344556677889999999999999999999999999999999999987 899999999999 4655 4679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
..++++++++|++++|+||+++||||+|||+ +++++++.+++++++..+ +.+++.+|+.++.....
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~ 229 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELLKD 229 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999997 889999999999999988 89999999999776433
No 20
>PRK05869 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.3e-49 Score=326.68 Aligned_cols=205 Identities=21% Similarity=0.285 Sum_probs=185.0
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~ 86 (243)
+++|++|+|||| +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|+|++++... . ........
T Consensus 15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~~~~~~ 85 (222)
T PRK05869 15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTL-S----AQEADTAA 85 (222)
T ss_pred cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhcc-C----hhhHHHHH
Confidence 589999999999 569999999999999999999999999 99999999999999999987642 1 11122334
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHHH
Q 026137 87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARRD 165 (243)
Q Consensus 87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~~ 165 (243)
+.+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| ..++++
T Consensus 86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~ 162 (222)
T PRK05869 86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE 162 (222)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence 55678999999999999999999999999999999999999987 899999999999 56665 578999999 999999
Q ss_pred HHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 166 VLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
++++|++++|+||+++||||+++|+ +++++++.+++++++..+ +.+++.+|+.++..+
T Consensus 163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~~ 220 (222)
T PRK05869 163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDVY 220 (222)
T ss_pred HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999998 889999999999999998 999999999997643
No 21
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-49 Score=334.23 Aligned_cols=216 Identities=26% Similarity=0.325 Sum_probs=189.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++ |++++ +|||+|.|++||+|.|++++..... ......
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~ 80 (262)
T PRK08140 6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL 80 (262)
T ss_pred EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence 577889999999999998 899999999999999999999 99999 9999999999999999998753210 000111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~ 157 (262)
T PRK08140 81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M 157 (262)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence 1122334566888999999999999999999999999999999999987 899999999999 56665 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++||||+|+|+ +++++++.++++++++.+ +.++..+|+.++.....
T Consensus 158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~ 222 (262)
T PRK08140 158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASATN 222 (262)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999998 789999999999999998 89999999999866444
No 22
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-50 Score=330.22 Aligned_cols=213 Identities=21% Similarity=0.289 Sum_probs=189.3
Q ss_pred eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHH
Q 026137 3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERV 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~ 82 (243)
....+++|+.|+||||. ..|+++..++.||.+++..++.|++++ ++|+||.|+.||+|+|++++..... .+
T Consensus 40 ~~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~-- 110 (290)
T KOG1680|consen 40 LVGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QD-- 110 (290)
T ss_pred EeecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cc--
Confidence 34568899999999998 899999999999999999999999999 9999999999999999999987322 11
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHH
Q 026137 83 HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~ 161 (243)
-....+.+.+..+.+.+||+|++|||+|+|||+||++.||+|||+++ ++|++|+.++|+ +|++| +++|+|.+| ..
T Consensus 111 -~~~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s 186 (290)
T KOG1680|consen 111 -VSDGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KS 186 (290)
T ss_pred -cccccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hH
Confidence 12223444555566899999999999999999999999999999987 999999999999 78776 579999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
+|+++++||++++|+||+++|||++|||. ++++++|.+|+++|++.| +.+++..|++++......+.
T Consensus 187 ~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~ 253 (290)
T KOG1680|consen 187 RALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF 253 (290)
T ss_pred HHHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence 99999999999999999999999999998 889999999999999999 99999999999885444433
No 23
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.8e-49 Score=335.21 Aligned_cols=218 Identities=23% Similarity=0.297 Sum_probs=191.2
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC-c-c
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGP-SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR-T-G 77 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~-~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~-~-~ 77 (243)
+|.++++++|++||||||+ +.|++|. +|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++...... . .
T Consensus 4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~ 80 (266)
T PRK09245 4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS 80 (266)
T ss_pred ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence 3678899999999999997 8899995 99999999999999999999 99999999999999999988542110 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137 78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK 156 (243)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~ 156 (243)
.......+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ 158 (266)
T PRK09245 81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI 158 (266)
T ss_pred chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence 01111223344677888999999999999999999999999999999999987 899999999999 57766 5789999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+| ..++++++++|++++|+||+++||||+++|+ +++++++.++++++++.| +.+++.+|+.+++...
T Consensus 159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~ 225 (266)
T PRK09245 159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQH 225 (266)
T ss_pred hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 99 9999999999999999999999999999997 889999999999999998 8999999999987543
No 24
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-49 Score=332.54 Aligned_cols=211 Identities=21% Similarity=0.356 Sum_probs=190.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|||||| +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++..... ...
T Consensus 4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 75 (257)
T PRK07658 4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ 75 (257)
T ss_pred EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence 67888999999999999 459999999999999999999999999 9999999999999999998754211 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~ 152 (257)
T PRK07658 76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K 152 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence 2334456678899999999999999999999999999999999999987 899999999999 67776 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++++||+++||||+++|+ +++.+++.++++++++.+ +.+++.+|+.++...
T Consensus 153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 215 (257)
T PRK07658 153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTTK 215 (257)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 899999999999999998 899999999997653
No 25
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-49 Score=331.94 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=188.8
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|||||| +.|++|.+|+.+|.++++.++.|++++ +|||+|.| ++||+|.|++++... . ..
T Consensus 5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~ 75 (258)
T PRK09076 5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA 75 (258)
T ss_pred EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence 57788999999999999 459999999999999999999999999 99999998 789999999987542 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG- 152 (258)
T PRK09076 76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG- 152 (258)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence 12234455678889999999999999999999999999999999999987 999999999999 57665 678999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++|||++|+|+ +++.+++.+++++++..+ +.++..+|+.++...
T Consensus 153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 216 (258)
T PRK09076 153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAAR 216 (258)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 899999999997653
No 26
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-49 Score=334.82 Aligned_cols=212 Identities=21% Similarity=0.283 Sum_probs=189.2
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.+++ +++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... . ..
T Consensus 13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~-~~ 86 (268)
T PRK07327 13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD--D-FE 86 (268)
T ss_pred EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC--c-HH
Confidence 45676 5789999999997 789999999999999999999999999 9999999999999999998764211 1 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 163 (268)
T PRK07327 87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG- 163 (268)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence 22233455678889999999999999999999999999999999999987 899999999999 56655 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++|||++++|+ +++++++.++|+++++.+ +.+++.+|+.++..
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 226 (268)
T PRK07327 164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW 226 (268)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 889999999999999998 99999999999864
No 27
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.1e-49 Score=333.15 Aligned_cols=209 Identities=21% Similarity=0.292 Sum_probs=188.0
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++... +. .
T Consensus 9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~- 80 (261)
T PRK08138 9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA---GA-I- 80 (261)
T ss_pred EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc---ch-h-
Confidence 45666 7899999999997 889999999999999999999999999 99999999999999999987642 11 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
..+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 155 (261)
T PRK08138 81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG- 155 (261)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence 123345677888999999999999999999999999999999999987 899999999999 67775 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++++||+++||||+++|+ +++.+++.++++++++.+ +.++..+|+.++...
T Consensus 156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 219 (261)
T PRK08138 156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAGA 219 (261)
T ss_pred HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 789999999999999988 899999999997654
No 28
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=100.00 E-value=3e-49 Score=333.54 Aligned_cols=211 Identities=20% Similarity=0.327 Sum_probs=186.1
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~ 79 (243)
|.+++ +++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|+|++++..... .. .
T Consensus 4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~ 78 (259)
T TIGR01929 4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D 78 (259)
T ss_pred EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence 45777 8999999999998 889999999999999999999999999 99999999 89999999997643211 01 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh-hhHHHHHHHhC
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD-YCAALFREKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~-~g~~~l~~~~g 158 (243)
.... ...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+ +++.++++++|
T Consensus 79 ~~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG 154 (259)
T TIGR01929 79 SGVH--RLNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG 154 (259)
T ss_pred hhHH--HHHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence 1111 113456788899999999999999999999999999999999987 899999999999 455 45789999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
+.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 217 (259)
T TIGR01929 155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD 217 (259)
T ss_pred -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 889999999999999998 99999999999765
No 29
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.7e-49 Score=330.48 Aligned_cols=209 Identities=20% Similarity=0.245 Sum_probs=187.7
Q ss_pred ceeeeeC---CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch
Q 026137 2 CTSEKHG---DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 i~~~~~~---~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~ 78 (243)
|.+++++ +|++||||||+ +.|++|.+|+++|.+++++++.|++++ +||++|.|++||+|.|++++..... .
T Consensus 5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~- 78 (251)
T PRK06023 5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G- 78 (251)
T ss_pred EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence 5677776 49999999998 899999999999999999999999999 9999999999999999998764211 1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~ 157 (243)
. ..+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++
T Consensus 79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~ 153 (251)
T PRK06023 79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM 153 (251)
T ss_pred c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence 1 112345667888999999999999999999999999999999999987 999999999999 67776 46899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
| ..++++++++|++++|+||+++|||++++|. +++.+++.+++++++..+ +.++..+|+.++..
T Consensus 154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 217 (251)
T PRK06023 154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP 217 (251)
T ss_pred h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence 9 9999999999999999999999999999998 889999999999999998 99999999999754
No 30
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=100.00 E-value=4.5e-49 Score=335.18 Aligned_cols=216 Identities=19% Similarity=0.302 Sum_probs=189.6
Q ss_pred eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC----cc-
Q 026137 3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR----TG- 77 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~----~~- 77 (243)
.++.+++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|+|++++...... +.
T Consensus 11 ~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~ 87 (275)
T PLN02664 11 QKSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG 87 (275)
T ss_pred EecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccch
Confidence 34568999999999998 899999999999999999999999999 99999999999999999987542110 00
Q ss_pred h-HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHH
Q 026137 78 A-RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE 155 (243)
Q Consensus 78 ~-~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~ 155 (243)
. ......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| ++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~ 165 (275)
T PLN02664 88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPS 165 (275)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHH
Confidence 0 1122334455678888999999999999999999999999999999999987 999999999999 57666 578999
Q ss_pred HhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 156 KVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
++| ..++++++++|++++|+||+++||||++||+.+++.+.+.++++++++.+ +.+++.+|+.+++..
T Consensus 166 ~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~ 233 (275)
T PLN02664 166 IVG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR 233 (275)
T ss_pred HhC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 999 99999999999999999999999999999854789999999999999998 999999999998654
No 31
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.2e-49 Score=332.01 Aligned_cols=214 Identities=26% Similarity=0.367 Sum_probs=192.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++.+... .. ...
T Consensus 5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~-~~-~~~ 79 (260)
T PRK07511 5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA-KP-PSV 79 (260)
T ss_pred eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc-cc-chh
Confidence 567889999999999997 899999999999999999999999999 9999999999999999998864211 01 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 156 (260)
T PRK07511 80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R 156 (260)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence 3345567788999999999999999999999999999999999999988 899999999999 57766 578999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++++||+++||||+++++ +++.+++.++++++++.+ +.++..+|+.++...
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~ 219 (260)
T PRK07511 157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADAP 219 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence 999999999999999999999999999998 789999999999999988 899999999997654
No 32
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=100.00 E-value=2.9e-49 Score=331.39 Aligned_cols=215 Identities=29% Similarity=0.478 Sum_probs=198.6
Q ss_pred eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHH
Q 026137 3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERV 82 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~ 82 (243)
.++++++|++|+||+|+ +.|++|.+++.+|.++++.++.|++++ +||++|.+++||+|.|++++... .....
T Consensus 1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~ 72 (245)
T PF00378_consen 1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA 72 (245)
T ss_dssp EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence 37899999999999998 999999999999999999999999999 99999999999999999999874 25566
Q ss_pred HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCCHH
Q 026137 83 HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGSAT 161 (243)
Q Consensus 83 ~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~~~ 161 (243)
..+.+.+++++.++..+||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++ ++.++++++| ..
T Consensus 73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~ 149 (245)
T PF00378_consen 73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS 149 (245)
T ss_dssp HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence 778889999999999999999999999999999999999999999988 889999999999 6755 4679999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
++++++++|++++|+||+++||||+++|+ +++.+++.+++++++..+ +.+++.+|+.+++.+...++
T Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~ 216 (245)
T PF00378_consen 150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE 216 (245)
T ss_dssp HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999998 679999999999999998 99999999999987555444
No 33
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.6e-49 Score=328.64 Aligned_cols=213 Identities=21% Similarity=0.321 Sum_probs=191.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++..... . .
T Consensus 7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~-- 78 (249)
T PRK07110 7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT--G-K-- 78 (249)
T ss_pred EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc--h-h--
Confidence 567889999999999998 899999999999999999999999999 9999999999999999998764211 1 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
..+.. ++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus 79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~ 152 (249)
T PRK07110 79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L 152 (249)
T ss_pred -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence 11222 57889999999999999999999999999999999999988 899999999999 57665 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
.++++++++|++++++||+++|||++|+++ +++.+++.++++++++.| +.+++.+|+.+++.....++
T Consensus 153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~ 220 (249)
T PRK07110 153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP 220 (249)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence 999999999999999999999999999997 889999999999999998 89999999999876555444
No 34
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.3e-49 Score=330.87 Aligned_cols=212 Identities=23% Similarity=0.329 Sum_probs=192.6
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..
T Consensus 7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~- 78 (259)
T PRK06688 7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP- 78 (259)
T ss_pred eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence 578899999999999998 899999999999999999999999999 9999999999999999998865311 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus 79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 154 (259)
T PRK06688 79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R 154 (259)
T ss_pred -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence 234566788999999999999999999999999999999999999987 999999999999 67765 579999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+ +.++..+|+.+++....
T Consensus 155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~ 219 (259)
T PRK06688 155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAATLT 219 (259)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhC
Confidence 999999999999999999999999999997 889999999999999988 88999999999875443
No 35
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=7.2e-49 Score=330.41 Aligned_cols=207 Identities=22% Similarity=0.292 Sum_probs=183.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++... +. ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~~ 77 (254)
T PRK08252 5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARG---ER-PSI 77 (254)
T ss_pred EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhcc---cc-hhh
Confidence 678899999999999997 889999999999999999999999999 99999999999999999988642 11 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
....+..++. ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 78 ---~~~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~ 149 (254)
T PRK08252 78 ---PGRGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y 149 (254)
T ss_pred ---hHHHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence 1112222322 4799999999999999999999999999999987 899999999999 56665 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
.++++++++|++++|+||+++||||+|+|+ +++++++.++++++++.| +.++..+|+.++...
T Consensus 150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~ 212 (254)
T PRK08252 150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVESG 212 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence 999999999999999999999999999998 889999999999999998 999999999997653
No 36
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.4e-49 Score=331.10 Aligned_cols=213 Identities=22% Similarity=0.298 Sum_probs=187.6
Q ss_pred ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+.++++ ++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++..... .. ..
T Consensus 6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~ 80 (262)
T PRK07468 6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA 80 (262)
T ss_pred EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence 456775 689999999998 899999999999999999999999999 9999999999999999998753211 11 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
........+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++.+++| .
T Consensus 81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~ 157 (262)
T PRK07468 81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E 157 (262)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence 11122345677889999999999999999999999999999999999987 899999999999 68777666777899 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+ +.++..+|+.++..
T Consensus 158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~ 219 (262)
T PRK07468 158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL 219 (262)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 999999999999999999999999999997 889999999999999998 99999999998764
No 37
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.4e-48 Score=322.55 Aligned_cols=219 Identities=23% Similarity=0.351 Sum_probs=195.3
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++||||+| +.|++|.+|+.+|.++++.++ ++++ +||+||.|++||+|.|++++... ..
T Consensus 4 ~i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~ 71 (229)
T PRK06213 4 LVSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQ 71 (229)
T ss_pred eEEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hH
Confidence 367888999999999998 789999999999999999988 5678 99999999999999999987642 12
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
....+...+.+++.++.++||||||+|||+|+|+|++|+++||+||+++++++|++||+++|+.+|+++..++++++| .
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~ 150 (229)
T PRK06213 72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-P 150 (229)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-H
Confidence 223455667888999999999999999999999999999999999999865889999999999656666778999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhhhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGLDIK 235 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~~~~ 235 (243)
..+++++++|++++|+||+++||||+++|+ +++.+++.++++++++.+ +.++..+|+.+++.....++....
T Consensus 151 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~~~~~ 222 (229)
T PRK06213 151 SAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIRAAIE 222 (229)
T ss_pred HHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999999999999997 889999999999999998 999999999999887777765443
No 38
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=100.00 E-value=1.4e-48 Score=329.94 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=191.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|.|++++.... ..
T Consensus 6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~~-----~~ 77 (260)
T PRK05809 6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDLN-----EE 77 (260)
T ss_pred EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhccC-----hH
Confidence 567889999999999997 899999999999999999999999999 99999999 9999999999876421 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 154 (260)
T PRK05809 78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG- 154 (260)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence 22234455677889999999999999999999999999999999999987 999999999999 67776 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||+++|+ +++.+++.+++++++..+ +.++..+|+.+++...
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 219 (260)
T PRK05809 155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGMQ 219 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999997 899999999999999998 8999999999986543
No 39
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=330.06 Aligned_cols=212 Identities=21% Similarity=0.347 Sum_probs=191.2
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~ 79 (243)
|.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.| ++||+|.|++++... . .
T Consensus 5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~ 76 (260)
T PRK07657 5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E 76 (260)
T ss_pred EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence 56775 7899999999997 899999999999999999999999999 99999998 599999999987542 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG 154 (260)
T PRK07657 77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG 154 (260)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence 223344566788899999999999999999999999999999999999987 899999999999 57666 678999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||+++|+ +++++++.+++++++..+ +.++..+|+.++....
T Consensus 155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~ 219 (260)
T PRK07657 155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNGIQ 219 (260)
T ss_pred -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999998 889999999999999998 9999999999986543
No 40
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=9.7e-49 Score=331.29 Aligned_cols=214 Identities=19% Similarity=0.237 Sum_probs=185.9
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++..... .+..
T Consensus 6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~ 80 (263)
T PRK07799 6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF 80 (263)
T ss_pred eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence 3678899999999999997 889999999999999999999999999 9999999999999999998865211 1010
Q ss_pred HHHHH-HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137 81 RVHYM-FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG 158 (243)
Q Consensus 81 ~~~~~-~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g 158 (243)
....+ ...+.. +.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG 157 (263)
T PRK07799 81 KDGSYDPSRIDA-LLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP 157 (263)
T ss_pred hhhhhhhhHHHH-HHHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence 00001 122233 33578999999999999999999999999999999987 899999999999 67766 568999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||++||+ +++.+++.++++++++.| +.++..+|+.++...
T Consensus 158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~ 221 (263)
T PRK07799 158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRETE 221 (263)
T ss_pred -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 789999999999999998 899999999997654
No 41
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-48 Score=329.71 Aligned_cols=212 Identities=21% Similarity=0.347 Sum_probs=190.1
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++++ .|++++ +||++|.|++||+|.|++++.+... ...
T Consensus 8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~ 79 (260)
T PRK07659 8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK 79 (260)
T ss_pred EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence 578889999999999997 89999999999999999999 588999 9999999999999999998864211 222
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~ 156 (260)
T PRK07659 80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E 156 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence 3345567788999999999999999999999999999999999999987 899999999999 57665 679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.++++++++|++++|+||+++||||++| + +++.+++.++++++++.| +.++..+|+.++.....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~ 220 (260)
T PRK07659 157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCELNRS 220 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999999999 6 789999999999999998 89999999999865433
No 42
>PLN02600 enoyl-CoA hydratase
Probab=100.00 E-value=1.5e-48 Score=327.88 Aligned_cols=206 Identities=21% Similarity=0.351 Sum_probs=186.9
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~~ 85 (243)
+++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||. |++||+|.|++++... . ......+
T Consensus 2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~ 73 (251)
T PLN02600 2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF 73 (251)
T ss_pred CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence 5789999999998 899999999999999999999999999 9999998 5899999999987542 1 1223345
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHHH
Q 026137 86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATARR 164 (243)
Q Consensus 86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a~ 164 (243)
...++.++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ..+++
T Consensus 74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~ 150 (251)
T PLN02600 74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK 150 (251)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence 566788889999999999999999999999999999999999987 999999999999 67666 579999999 99999
Q ss_pred HHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 165 DVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
+++++|++++++||+++||||+++|+ +++++++.++++++++.+ +.++..+|+.++...
T Consensus 151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~ 209 (251)
T PLN02600 151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEGS 209 (251)
T ss_pred HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHc
Confidence 99999999999999999999999998 889999999999999998 999999999998653
No 43
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.3e-48 Score=332.57 Aligned_cols=216 Identities=20% Similarity=0.307 Sum_probs=188.3
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc--ch
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT--GA 78 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~--~~ 78 (243)
|.+++ +++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++....... .+
T Consensus 11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 87 (276)
T PRK05864 11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR 87 (276)
T ss_pred eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence 56676 7899999999998 899999999999999999999999999 999999999999999999874311000 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~ 157 (243)
..........+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~v 166 (276)
T PRK05864 88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGLTASELGLSYLLPRAI 166 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCCCCCCcchheehHhhh
Confidence 1111223455677888999999999999999999999999999999999987 999999999999433665 56899999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
| ..++++++++|++++|+||+++|||++++++ +++++++.++|++++..| +.++..+|+.++..
T Consensus 167 G-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~ 230 (276)
T PRK05864 167 G-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG 230 (276)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9 9999999999999999999999999999998 889999999999999998 89999999998764
No 44
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-48 Score=328.29 Aligned_cols=210 Identities=24% Similarity=0.294 Sum_probs=187.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||||+ +.|++|.+|+++|.++++.++.|++++ +|||||.|++||+|+|++++..... .. .
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~-- 77 (249)
T PRK05870 5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A-- 77 (249)
T ss_pred EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence 577889999999999998 899999999999999999999999999 9999999999999999998865211 11 1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
......+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| +
T Consensus 78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~ 153 (249)
T PRK05870 78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P 153 (249)
T ss_pred -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence 223345566778899999999999999999999999999999999987 899999999999 67766 468999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.++++++++|++++|+||+++||||+++ +++.+++.++++++++.+ +.++..+|+.++....
T Consensus 154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~ 215 (249)
T PRK05870 154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATAS 215 (249)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999 468999999999999998 9999999999987543
No 45
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.6e-48 Score=329.25 Aligned_cols=208 Identities=25% Similarity=0.322 Sum_probs=183.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +||++|.| ++||+|.|++++..... . ..
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 79 (259)
T PRK06494 6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK--R-GW 79 (259)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc--c-hh
Confidence 577889999999999997 789999999999999999999999999 99999998 79999999998754211 0 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
. ...+..+ ..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 80 ~----~~~~~~~-~~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg- 151 (259)
T PRK06494 80 P----ESGFGGL-TSRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG- 151 (259)
T ss_pred h----hHHHHHH-HHHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence 1 1122233 3346899999999999999999999999999999987 899999999999 56665 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++||||+++|+ +++++++.+++++++..+ +.++..+|+.+++..
T Consensus 152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 215 (259)
T PRK06494 152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRGL 215 (259)
T ss_pred HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998 889999999999999998 999999999998653
No 46
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-48 Score=328.53 Aligned_cols=208 Identities=22% Similarity=0.258 Sum_probs=182.0
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++.... . ..
T Consensus 5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~---~-~~- 76 (254)
T PRK08259 5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGR---G-NR- 76 (254)
T ss_pred EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhccc---c-hh-
Confidence 567889999999999997 889999999999999999999999999 999999999999999999875421 1 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
.... ....+...+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.+| ++++++++| .
T Consensus 77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~ 151 (254)
T PRK08259 77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H 151 (254)
T ss_pred hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence 1100 0111222334799999999999999999999999999999987 899999999999 56655 678999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++++|++++|+||+++||||+|||+ +++++++.++|+++++.+ +.+++.+|+.++..
T Consensus 152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~ 213 (254)
T PRK08259 152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ 213 (254)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 889999999999999998 99999999999764
No 47
>PLN02888 enoyl-CoA hydratase
Probab=100.00 E-value=2.7e-48 Score=328.54 Aligned_cols=209 Identities=21% Similarity=0.302 Sum_probs=186.1
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++. +++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|+|++++..... ..
T Consensus 11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~ 83 (265)
T PLN02888 11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK----GD 83 (265)
T ss_pred EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc----ch
Confidence 56665 7899999999997 899999999999999999999999999 9999999999999999998754211 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
......+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 84 ----~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG- 156 (265)
T PLN02888 84 ----VKDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG- 156 (265)
T ss_pred ----hhHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence 1112355677889999999999999999999999999999999987 899999999999 67766 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
..++++++++|++++|+||+++||||++|++ +++.+++.++++++++.+ +.+++.+|+.++....
T Consensus 157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~ 221 (265)
T PLN02888 157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGLK 221 (265)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 789999999999999998 8999999999986543
No 48
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=100.00 E-value=2.1e-48 Score=328.79 Aligned_cols=209 Identities=22% Similarity=0.349 Sum_probs=185.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++|||||| +.|++|.+|+.+|.+++++++.|++++ +||+||.| ++||+|.|++++.+... . ..
T Consensus 5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~ 77 (261)
T PRK03580 5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA 77 (261)
T ss_pred EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence 57889999999999999 669999999999999999999999999 99999998 79999999998764211 1 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
.+.......+.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg- 151 (261)
T PRK03580 78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP- 151 (261)
T ss_pred ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence 11122345677899999999999999999999999999999999987 899999999999 56666 569999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
..++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.+ +.+++.+|+.++...
T Consensus 152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 215 (261)
T PRK03580 152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRETS 215 (261)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999997 899999999999999998 999999999997653
No 49
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.4e-48 Score=328.54 Aligned_cols=217 Identities=24% Similarity=0.351 Sum_probs=190.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcC-CCCEEEEEecCCCccccCCChhhHHHcCCCcc-hH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEA-TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTG-AR 79 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~-~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~-~~ 79 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|+ +++ +||+||.|++||+|.|++++........ ..
T Consensus 6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~ 82 (266)
T PRK05981 6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG 82 (266)
T ss_pred EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence 678889999999999997 899999999999999999999876 599 9999999999999999998754211000 00
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhC
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g 158 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg 160 (266)
T PRK05981 83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG 160 (266)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence 112234455678899999999999999999999999999999999999987 899999999999 67766 578999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+..+++++++|++++|+||+++|||++++|+ +++++++.+++++++..| +.++..+|+.++....
T Consensus 161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~ 225 (266)
T PRK05981 161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSPE 225 (266)
T ss_pred -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999998 889999999999999988 8899999999976543
No 50
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.9e-48 Score=325.65 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=184.3
Q ss_pred eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137 4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~ 83 (243)
-+++++|++|||||| +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++... +. .....
T Consensus 6 ~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~ 77 (249)
T PRK07938 6 TTPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALI 77 (249)
T ss_pred cccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHH
Confidence 345889999999999 569999999999999999999999999 99999999999999999987542 11 12222
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH
Q 026137 84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a 163 (243)
.....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ + +++.++++++| ..++
T Consensus 78 ~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a 152 (249)
T PRK07938 78 DANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLM 152 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHH
Confidence 23345677888999999999999999999999999999999999987 899999999998 4 44568999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
++++++|++++|+||+++|||+++||+ +++++++.+++++++..+ +.++..+|+.++...
T Consensus 153 ~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~ 212 (249)
T PRK07938 153 RALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGID 212 (249)
T ss_pred HHHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence 999999999999999999999999997 899999999999999998 999999999997653
No 51
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=100.00 E-value=2.7e-48 Score=329.96 Aligned_cols=211 Identities=19% Similarity=0.309 Sum_probs=185.9
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. ..
T Consensus 15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~ 89 (273)
T PRK07396 15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD 89 (273)
T ss_pred eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence 567889999999999998 899999999999999999999999999 99999998 69999999998743110 00 11
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g~ 159 (243)
....+ ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus 90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG- 164 (273)
T PRK07396 90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG- 164 (273)
T ss_pred hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence 11111 2345777899999999999999999999999999999999987 899999999999 5655 5679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++||||+|||+ +++++++.++|+++++.+ +.+++.+|+.++..
T Consensus 165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 227 (273)
T PRK07396 165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD 227 (273)
T ss_pred HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 899999999999999998 99999999999764
No 52
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.5e-48 Score=326.12 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=187.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|||||| +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++..... . ...
T Consensus 6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~ 78 (257)
T PRK06495 6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD 78 (257)
T ss_pred EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence 56788999999999999 569999999999999999999999999 9999999999999999998754211 1 112
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~ 161 (243)
...+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ . +++.++++++| ..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~ 153 (257)
T PRK06495 79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS 153 (257)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence 2233455678889999999999999999999999999999999999987 999999999999 3 34567999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
++++++++|++++|+||+++|||++++|+ +++.+++.++++++++.| +.+++.+|+.++..
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~ 214 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI 214 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence 99999999999999999999999999997 889999999999999998 99999999999765
No 53
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=100.00 E-value=2.9e-48 Score=327.78 Aligned_cols=208 Identities=16% Similarity=0.302 Sum_probs=186.6
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--CCccccCCChhhHHHcCCCcchH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--g~~F~~G~D~~~~~~~~~~~~~~ 79 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|+ ++ +||+||. |++||+|.|++++..... . .
T Consensus 6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~ 78 (261)
T PRK11423 6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P 78 (261)
T ss_pred eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence 678889999999999998 899999999999999999999887 99 9999986 389999999998754211 1 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-hHHHHHHHhC
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-CAALFREKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-g~~~l~~~~g 158 (243)
..+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ |+.++++++|
T Consensus 79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg 153 (261)
T PRK11423 79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG 153 (261)
T ss_pred ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence 123455678899999999999999999999999999999999999987 899999999999 4555 5779999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
+.++++++++|++++|+||+++||||+|||+ +++++++.++++++++.+ +.+++.+|+.++..
T Consensus 154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~ 216 (261)
T PRK11423 154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRVL 216 (261)
T ss_pred -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence 9999999999999999999999999999997 889999999999999998 89999999999753
No 54
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=100.00 E-value=9.6e-48 Score=326.97 Aligned_cols=218 Identities=18% Similarity=0.290 Sum_probs=191.3
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CccccCCChhhHHHcCCCcch
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG--KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g--~~F~~G~D~~~~~~~~~~~~~ 78 (243)
|.+++ +++|++||||+| +.|++|.+|+.+|.+++++++.|++++ +||+||.| ++||+|.|++++.... ..
T Consensus 13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~--~~- 85 (278)
T PLN03214 13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPK--TS- 85 (278)
T ss_pred eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhccc--cc-
Confidence 56777 689999999998 789999999999999999999999999 99999987 7999999999875311 11
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~ 157 (243)
......+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|+++ ++++++++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~ 164 (278)
T PLN03214 86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI 164 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence 1122233344567888999999999999999999999999999999999987 899999999999446655 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
| ..++++++++|++++++||+++||||+|||+ +++++++.++++++++.+ +.++..+|+.+++.....++
T Consensus 165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~ 234 (278)
T PLN03214 165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE 234 (278)
T ss_pred C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence 9 9999999999999999999999999999998 889999999999999998 99999999999877655444
No 55
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=100.00 E-value=5e-48 Score=324.47 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=182.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||+| +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++.. ..
T Consensus 3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~-------~~- 70 (251)
T TIGR03189 3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP-------DQ- 70 (251)
T ss_pred EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc-------hh-
Confidence 56788999999999999 569999999999999999999999999 9999999999999999997532 11
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++++.++++++| ..
T Consensus 71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 147 (251)
T TIGR03189 71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV 147 (251)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence 1123345677888999999999999999999999999999999999987 899999999999 56667789999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHH-HHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL-GKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~-a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
++++++++|++++|+||+++|||++++++ ++ +++.++ ++++++.| +.+++.+|+.++.....
T Consensus 148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~~~ 210 (251)
T TIGR03189 148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGMNE 210 (251)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999986 43 466666 68999998 89999999999765443
No 56
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=100.00 E-value=5.4e-48 Score=325.75 Aligned_cols=214 Identities=27% Similarity=0.400 Sum_probs=191.9
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++.+++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|+|++++... . . ...
T Consensus 7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~~-~-~--~~~ 79 (257)
T COG1024 7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLSP-E-D--GNA 79 (257)
T ss_pred eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhcc-c-c--hhH
Confidence 566778889999999998 889999999999999999999999999 99999999999999999998741 1 1 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh-hhHHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD-YCAALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~-~g~~~l~~~~g~~ 160 (243)
...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|+ +++.++++.+| .
T Consensus 80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~ 156 (257)
T COG1024 80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R 156 (257)
T ss_pred HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence 2256677788999999999999999999999999999999999999987 999999999999 675 44679999999 9
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
.+++++++||+.++++||+++|||+++++..+++++.+.+++++++. + +.++..+|+.++.....
T Consensus 157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~~ 221 (257)
T COG1024 157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALEA 221 (257)
T ss_pred HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999757999999999999998 5 88999999998876443
No 57
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.3e-48 Score=331.69 Aligned_cols=215 Identities=19% Similarity=0.215 Sum_probs=188.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc-----
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT----- 76 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~----- 76 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|.|++++.......
T Consensus 6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~ 82 (296)
T PRK08260 6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP 82 (296)
T ss_pred EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence 577889999999999998 899999999999999999999999999 999999999999999999875310000
Q ss_pred -------chHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh
Q 026137 77 -------GARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC 149 (243)
Q Consensus 77 -------~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g 149 (243)
........+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g 160 (296)
T PRK08260 83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA 160 (296)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence 000111223344567888999999999999999999999999999999999987 899999999999 67776
Q ss_pred -HHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchh
Q 026137 150 -AALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~ 225 (243)
++++++++| ..++++++++|++++|+||+++|||++|||+ +++++++.++++++++. + +.++..+|+.+++.
T Consensus 161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~ 234 (296)
T PRK08260 161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM 234 (296)
T ss_pred hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence 468999999 9999999999999999999999999999998 88999999999999985 6 88999999999765
No 58
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=6.7e-48 Score=327.73 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=188.2
Q ss_pred ceeeeeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch-H
Q 026137 2 CTSEKHG-DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA-R 79 (243)
Q Consensus 2 i~~~~~~-~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~-~ 79 (243)
|.+++++ +|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||+|.|++||+|.|++++......... .
T Consensus 7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~ 83 (272)
T PRK06210 7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD 83 (272)
T ss_pred EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence 5678888 99999999998 899999999999999999999999999 99999999999999999987542110000 0
Q ss_pred H---HH-HHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHH
Q 026137 80 E---RV-HYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFR 154 (243)
Q Consensus 80 ~---~~-~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~ 154 (243)
. .. ......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~ 161 (272)
T PRK06210 84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP 161 (272)
T ss_pred ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence 0 00 011113456778899999999999999999999999999999999987 999999999999 67776 56899
Q ss_pred HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC-CCCcchHHHHHHhhchhHHH
Q 026137 155 EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR-KCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~-~~~~~~~~~~K~~l~~~~~~ 228 (243)
+++| +.++++++++|++++|+||+++||||+++|+ +++.+++.++++++++. + +.++..+|+.+++....
T Consensus 162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~~~~ 232 (272)
T PRK06210 162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYEDAFQ 232 (272)
T ss_pred hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcccC
Confidence 9999 9999999999999999999999999999998 88999999999999975 7 89999999999865433
No 59
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.1e-47 Score=328.08 Aligned_cols=216 Identities=21% Similarity=0.341 Sum_probs=188.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCC------
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSR------ 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~------ 75 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|.|++++......
T Consensus 6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~ 82 (288)
T PRK08290 6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ 82 (288)
T ss_pred EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence 678889999999999997 889999999999999999999999999 99999999999999999976321000
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCC
Q 026137 76 -----------TGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLT 144 (243)
Q Consensus 76 -----------~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~ 144 (243)
.............+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl- 160 (288)
T PRK08290 83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI- 160 (288)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence 0001111122334567788899999999999999999999999999999999987 899999999998
Q ss_pred CChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137 145 LPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224 (243)
Q Consensus 145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~ 224 (243)
|+.+..++++++| +.++++++++|++++|+||+++||||++|++ +++++++.++++++++.+ +.++..+|+.+++
T Consensus 161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~ 235 (288)
T PRK08290 161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ 235 (288)
T ss_pred -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence 3455667899999 9999999999999999999999999999998 889999999999999998 8999999999987
Q ss_pred hHH
Q 026137 225 DLC 227 (243)
Q Consensus 225 ~~~ 227 (243)
...
T Consensus 236 ~~~ 238 (288)
T PRK08290 236 TLD 238 (288)
T ss_pred HHh
Confidence 654
No 60
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=1.4e-47 Score=321.34 Aligned_cols=208 Identities=20% Similarity=0.246 Sum_probs=185.2
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
||.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||+|.|+.||+|.|++++... .
T Consensus 1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~- 70 (248)
T PRK06072 1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F- 70 (248)
T ss_pred CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence 7899999999999999997 899999999999999999999999999 99999999999999999987531 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
...+.+.+++++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g- 146 (248)
T PRK06072 71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG- 146 (248)
T ss_pred -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence 1223455677888999999999999999999999999999999999987 899999999999 56665 568999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGV 229 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~ 229 (243)
. ++++++++|++++|+||+++||||++ +++.+++.++|+++++.| +.++..+|+.+++.....
T Consensus 147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~ 209 (248)
T PRK06072 147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLYND 209 (248)
T ss_pred H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhcC
Confidence 7 78999999999999999999999953 246789999999999998 899999999998765443
No 61
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.3e-47 Score=321.86 Aligned_cols=213 Identities=21% Similarity=0.305 Sum_probs=187.0
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +||+||.|++||+|.|++++..... .. ...
T Consensus 5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~~~ 79 (262)
T PRK07509 5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG-NA-VKL 79 (262)
T ss_pred EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc-hh-hhh
Confidence 678899999999999998 899999999999999999999999999 9999999999999999998764211 10 111
Q ss_pred ----HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHH
Q 026137 82 ----VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREK 156 (243)
Q Consensus 82 ----~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~ 156 (243)
.......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ 157 (262)
T PRK07509 80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGL 157 (262)
T ss_pred HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHH
Confidence 1112234566778889999999999999999999999999999999987 899999999999 57765 5799999
Q ss_pred hCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 157 VGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+| ..++++++++|++++|+||+++||||+++++ +.+++.++++++++.+ +.++..+|+.+++...
T Consensus 158 ~g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~~ 222 (262)
T PRK07509 158 VR-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSWT 222 (262)
T ss_pred hC-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence 99 9999999999999999999999999999854 5789999999999998 9999999999987644
No 62
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=2.7e-47 Score=318.67 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=179.6
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
||.++++++|++||||||+ +.|++|.+|+.+|.+++++++.+ +++ +|||||.|++||+|.|+++... .
T Consensus 1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~- 68 (243)
T PRK07854 1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A- 68 (243)
T ss_pred CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence 6889999999999999998 89999999999999999999965 899 9999999999999999985211 1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G- 143 (243)
T PRK07854 69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG- 143 (243)
T ss_pred --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence 123345677888999999999999999999999999999999999987 899999999999 56665 679999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~ 224 (243)
..++++++++|++++|+||+++|||++|++. +++.++++++++.+ +.++..+|+.++.
T Consensus 144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-----~~a~~~a~~l~~~~--~~a~~~~K~~l~~ 201 (243)
T PRK07854 144 GGRARAMLLGAEKLTAEQALATGMANRIGTL-----ADAQAWAAEIAGLA--PLALQHAKRVLND 201 (243)
T ss_pred HHHHHHHHHcCCCcCHHHHHHCCCcccccCH-----HHHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence 9999999999999999999999999999752 27899999999998 9999999999975
No 63
>PLN02921 naphthoate synthase
Probab=100.00 E-value=5e-47 Score=328.08 Aligned_cols=212 Identities=21% Similarity=0.335 Sum_probs=185.2
Q ss_pred ceeee--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcch
Q 026137 2 CTSEK--HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGA 78 (243)
Q Consensus 2 i~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~ 78 (243)
|.+++ +++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +|||+|.| ++||+|+|++++..... ..
T Consensus 67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~- 141 (327)
T PLN02921 67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG- 141 (327)
T ss_pred EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence 45666 5899999999998 899999999999999999999999999 99999999 89999999998753110 00
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhC
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVG 158 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g 158 (243)
......+ ...+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+.++++|+.++++++|
T Consensus 142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl~p~~gg~~~L~rliG 218 (327)
T PLN02921 142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGSFDAGYGSSIMARLVG 218 (327)
T ss_pred hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCCCCCccHHHHHHHHhC
Confidence 1111111 2345778899999999999999999999999999999999987 899999999999433445679999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
..++++++++|++++|+||+++|||++|+|. +++++++.++++++++.+ +.+++.+|+.++..
T Consensus 219 -~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~ 281 (327)
T PLN02921 219 -QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA 281 (327)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998 899999999999999998 99999999999765
No 64
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=5.1e-47 Score=326.46 Aligned_cols=216 Identities=22% Similarity=0.273 Sum_probs=187.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCc---ch
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRT---GA 78 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~---~~ 78 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|.|++++....... ..
T Consensus 12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~ 88 (302)
T PRK08272 12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA 88 (302)
T ss_pred EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence 567889999999999998 899999999999999999999999999 999999999999999999886421100 00
Q ss_pred ---------------HH--HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccccc
Q 026137 79 ---------------RE--RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDI 141 (243)
Q Consensus 79 ---------------~~--~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~ 141 (243)
.. ....+...+++++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~ 167 (302)
T PRK08272 89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV 167 (302)
T ss_pred cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence 00 00123455677888999999999999999999999999999999999988 8999999998
Q ss_pred CCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHh
Q 026137 142 GLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKS 221 (243)
Q Consensus 142 G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~ 221 (243)
|. +|+. ..+++++| ..+|++++++|++++|+||+++|||++++|+ +++.+++.++|+++++.| +.++..+|+.
T Consensus 168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~ 240 (302)
T PRK08272 168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA 240 (302)
T ss_pred cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 55 3433 35788999 9999999999999999999999999999997 899999999999999998 9999999999
Q ss_pred hchhHHH
Q 026137 222 LYPDLCG 228 (243)
Q Consensus 222 l~~~~~~ 228 (243)
++..+..
T Consensus 241 l~~~~~~ 247 (302)
T PRK08272 241 VNSALLQ 247 (302)
T ss_pred HHHHHHH
Confidence 9876543
No 65
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=4.2e-47 Score=320.76 Aligned_cols=215 Identities=26% Similarity=0.347 Sum_probs=186.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|.|++++..... +. ...
T Consensus 8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~~ 82 (260)
T PRK07827 8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG-DP-YDA 82 (260)
T ss_pred eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc-Cc-hhH
Confidence 567889999999999998 899999999999999999999999999 9999999999999999998754211 11 112
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~~ 160 (243)
...+...+.+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .++++ ++ .
T Consensus 83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~-l~-~ 158 (260)
T PRK07827 83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPR-LS-P 158 (260)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHh-hh-H
Confidence 2234556788899999999999999999999999999999999999987 899999999999 687775 46665 45 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVL 230 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l 230 (243)
.++++++++|++++|+||+++|||+++++ ++.+++.++++++++.+ +.++..+|+.+++.+...+
T Consensus 159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~ 223 (260)
T PRK07827 159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVLAGF 223 (260)
T ss_pred HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCH
Confidence 68999999999999999999999999963 48899999999999998 8999999999987654433
No 66
>PRK08321 naphthoate synthase; Validated
Probab=100.00 E-value=1.2e-46 Score=323.73 Aligned_cols=216 Identities=17% Similarity=0.256 Sum_probs=183.7
Q ss_pred ceeee--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-------CccccCCChhhHHHc
Q 026137 2 CTSEK--HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-------KFFSNGFDLAWAQAA 72 (243)
Q Consensus 2 i~~~~--~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-------~~F~~G~D~~~~~~~ 72 (243)
|++++ +++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|+|++++...
T Consensus 25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~ 101 (302)
T PRK08321 25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD 101 (302)
T ss_pred EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence 55666 8999999999998 899999999999999999999999999 99999987 599999999875321
Q ss_pred C----C-CcchHHHHHHH-HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEe-cCccceeccccccCCCC
Q 026137 73 G----S-RTGARERVHYM-FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMR-RDKGVLYMSEVDIGLTL 145 (243)
Q Consensus 73 ~----~-~~~~~~~~~~~-~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~-~~~a~f~~p~~~~G~~~ 145 (243)
. . .+......... .....++...+..+||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl~p 180 (302)
T PRK08321 102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGSFD 180 (302)
T ss_pred cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCccccccCC
Confidence 0 0 00000010111 1123456778899999999999999999999999999999999 45 89999999999954
Q ss_pred ChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 146 PDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 146 p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
|++++.++++++| ..++++++++|++++|+||+++|||+++||+ +++++++.++++++++.+ +.+++.+|+.++..
T Consensus 181 ~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~ 256 (302)
T PRK08321 181 GGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNLT 256 (302)
T ss_pred CchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence 5556779999999 9999999999999999999999999999997 889999999999999998 99999999999754
No 67
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=100.00 E-value=2.1e-46 Score=315.56 Aligned_cols=208 Identities=16% Similarity=0.201 Sum_probs=181.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
+.++++++|++|+||+|+ +.|++|.+|+.+|.+++++++ ++++ +||+||.|++||+|+|++++..... . ...
T Consensus 6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~ 77 (255)
T PRK07112 6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA 77 (255)
T ss_pred EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence 577889999999999997 899999999999999999998 4689 9999999999999999998764211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~ 161 (243)
.......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~ 154 (255)
T PRK07112 78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ 154 (255)
T ss_pred hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence 1112344567888999999999999999999999999999999999987 899999999999 68777788999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
++++++++|++++|+||+++||||+++|+ ++ ..+.++++++++.+ +.++..+|+.++..
T Consensus 155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~~ 213 (255)
T PRK07112 155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYASTL 213 (255)
T ss_pred HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence 99999999999999999999999999997 43 25788999999998 89999999998753
No 68
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=100.00 E-value=3.1e-46 Score=320.47 Aligned_cols=214 Identities=18% Similarity=0.171 Sum_probs=179.6
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhh-HHH---cCCCcc
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAW-AQA---AGSRTG 77 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~-~~~---~~~~~~ 77 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.+++++++.|++++ +|||||.|++||+|+|+++ +.. ....+.
T Consensus 7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~ 83 (298)
T PRK12478 7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG 83 (298)
T ss_pred EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence 567889999999999998 899999999999999999999999999 9999999999999999985 211 000000
Q ss_pred hHHHHHHH------HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccccc-CCCCChhhH
Q 026137 78 ARERVHYM------FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDI-GLTLPDYCA 150 (243)
Q Consensus 78 ~~~~~~~~------~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~-G~~~p~~g~ 150 (243)
.......+ ......++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++ |+ ++++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~~-~ 160 (298)
T PRK12478 84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLTG-M 160 (298)
T ss_pred ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cchh-H
Confidence 00000111 011234567789999999999999999999999999999999988 8999999997 88 4422 2
Q ss_pred HHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 151 ALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
+.+++| ..++++++++|++++|+||+++|||++|||+ +++++++.+++++++..| +.+++.+|+.++....
T Consensus 161 --~~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~ 231 (298)
T PRK12478 161 --WLYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE 231 (298)
T ss_pred --HHHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence 236799 9999999999999999999999999999998 899999999999999998 9999999999986533
No 69
>PRK08788 enoyl-CoA hydratase; Validated
Probab=100.00 E-value=9.7e-46 Score=314.72 Aligned_cols=214 Identities=19% Similarity=0.243 Sum_probs=176.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----cCCCCEEEEEecC-CCccccCCChhhHHHcCCC
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKA-----EATPGSAFITTSH-GKFFSNGFDLAWAQAAGSR 75 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~-----~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~ 75 (243)
|.++.+++|++|+|| |+ +.|++|.+|+.+|.+++++++. |++++ +||+||. |++||+|.|++++.....
T Consensus 19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~- 93 (287)
T PRK08788 19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR- 93 (287)
T ss_pred EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence 567778999999997 87 8999999999999999999998 88999 9999999 799999999998753211
Q ss_pred cchHHHHHHHHHHHHHHHHHHh---cCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HH
Q 026137 76 TGARERVHYMFKSFRPLVAAMM---DLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AA 151 (243)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~l~---~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~ 151 (243)
..+......+...+.+.+.++. .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~ 171 (287)
T PRK08788 94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS 171 (287)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence 1111111122222233333333 799999999999999999999999999999987 899999999999 67665 67
Q ss_pred HHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137 152 LFREKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224 (243)
Q Consensus 152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~ 224 (243)
++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..+..+.++...|+.++.
T Consensus 172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~ 242 (287)
T PRK08788 172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP 242 (287)
T ss_pred HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence 8999999 9999999999999999999999999999998 889999999999999764234555556655544
No 70
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=100.00 E-value=5.7e-46 Score=324.16 Aligned_cols=214 Identities=20% Similarity=0.241 Sum_probs=185.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|+|++++..... .....
T Consensus 5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~ 80 (342)
T PRK05617 5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL 80 (342)
T ss_pred EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence 678899999999999998 899999999999999999999999999 99999998 99999999998754211 11011
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~ 159 (243)
....+.....+++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ .+++++.|
T Consensus 81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g- 157 (342)
T PRK05617 81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG- 157 (342)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence 11123344557888999999999999999999999999999999999987 999999999999 677764 67888755
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH------------------------------------------
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA------------------------------------------ 197 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~------------------------------------------ 197 (243)
..+++++++|++++|+||+++|||++++|+ +++...
T Consensus 158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 235 (342)
T PRK05617 158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC 235 (342)
T ss_pred -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence 578999999999999999999999999998 778776
Q ss_pred --------------------HHHHHHHHhcCCCCcchHHHHHHhhchhH
Q 026137 198 --------------------SMRLGKQLAGRKCTGEVYAEIRKSLYPDL 226 (243)
Q Consensus 198 --------------------a~~~a~~~~~~~~~~~~~~~~K~~l~~~~ 226 (243)
+.+++++|++.+ |.++..+|+.+++..
T Consensus 236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~~ 282 (342)
T PRK05617 236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRAR 282 (342)
T ss_pred hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHhc
Confidence 889999999998 999999999997653
No 71
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=4e-45 Score=322.46 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=184.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus 39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 114 (401)
T PLN02157 39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA 114 (401)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 567889999999999998 899999999999999999999999999 9999999999999999998865321 111122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+....+++...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~ 191 (401)
T PLN02157 115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R 191 (401)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence 2334444556778899999999999999999999999999999999987 899999999999 68776 568999998 6
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
.++++++||++++|+||+++|||+++||+ +++ +++.+++++++..+ +.++..+|+.++..
T Consensus 192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~~ 251 (401)
T PLN02157 192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAEV 251 (401)
T ss_pred -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhcc
Confidence 78999999999999999999999999998 777 67889999998876 78899999988653
No 72
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=1.1e-44 Score=319.66 Aligned_cols=211 Identities=18% Similarity=0.196 Sum_probs=181.4
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|++|.+|+.+|.++++.++.|++|+ +|||+|.|++||+|+|++++..... . ...
T Consensus 13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~--~-~~~ 86 (379)
T PLN02874 13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE--S-DDS 86 (379)
T ss_pred eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc--c-chH
Confidence 567789999999999997 899999999999999999999999999 9999999999999999998854211 1 111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus 87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~ 163 (379)
T PLN02874 87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H 163 (379)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence 2223344556778899999999999999999999999999999999987 899999999999 57766 567888877 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH---H----------------------------------------
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE---A---------------------------------------- 197 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~---~---------------------------------------- 197 (243)
.++++++||++++|+||+++|||+++||+ +++.+ +
T Consensus 164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 241 (379)
T PLN02874 164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINEC 241 (379)
T ss_pred -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHH
Confidence 78999999999999999999999999997 66755 2
Q ss_pred ------------------------HHHHHHHHhcCCCCcchHHHHHHhhchh
Q 026137 198 ------------------------SMRLGKQLAGRKCTGEVYAEIRKSLYPD 225 (243)
Q Consensus 198 ------------------------a~~~a~~~~~~~~~~~~~~~~K~~l~~~ 225 (243)
|.+++++|++.+ |.+++.+|+.++..
T Consensus 242 f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~s--P~al~~tk~~~~~~ 291 (379)
T PLN02874 242 FSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSS--PTGLKITLRSIREG 291 (379)
T ss_pred hCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence 347888898888 89999999988764
No 73
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=1e-43 Score=305.54 Aligned_cols=208 Identities=14% Similarity=0.180 Sum_probs=181.1
Q ss_pred CCEEE--EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHH
Q 026137 8 GDVFV--LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHY 84 (243)
Q Consensus 8 ~~v~~--i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~ 84 (243)
.|++. |+||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.| ++||+|.|++++..... .. ......
T Consensus 34 ~~~~~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~ 108 (360)
T TIGR03200 34 PGLYNAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQ 108 (360)
T ss_pred CceEEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHH
Confidence 35544 8999997 899999999999999999999999999 99999999 79999999998765211 11 222334
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHH
Q 026137 85 MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a 163 (243)
+.+.+++++.++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| +.++++++| ..+|
T Consensus 109 ~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA 185 (360)
T TIGR03200 109 YMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQA 185 (360)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHH
Confidence 5566778899999999999999999999999999999999999987 999999999999 57666 579999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCChhHH------------HHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERV------------AEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l------------~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~ 224 (243)
++++++|++++|+||+++|||++++|+ +++ ++.+.++++.+...+....++...|.++..
T Consensus 186 ~~llltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 257 (360)
T TIGR03200 186 MVSGTLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ 257 (360)
T ss_pred HHHHHhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence 999999999999999999999999998 778 888888899998887444588888887766
No 74
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=9.5e-45 Score=287.74 Aligned_cols=228 Identities=21% Similarity=0.306 Sum_probs=201.8
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcC---CCcch----H
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG---SRTGA----R 79 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~---~~~~~----~ 79 (243)
+.-|+.+.||||. +.|++|..|+.|+.++++.+..||++| +||++|.|+.||+|+|++.+.... ....+ .
T Consensus 29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g 105 (292)
T KOG1681|consen 29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG 105 (292)
T ss_pred CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence 5689999999999 999999999999999999999999999 999999999999999988765431 10111 2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhC
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVG 158 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g 158 (243)
....++...+|+-+..|.+||||+|++|||+|+|+|..|..+||+|+|++| ++|..-|+.+|+ ..+.|+ .++|..+|
T Consensus 106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG 183 (292)
T KOG1681|consen 106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG 183 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence 345677889999999999999999999999999999999999999999999 999999999999 688886 79999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh--hhHHH
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG--LDIKA 236 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~--~~~~~ 236 (243)
+...++++.+|++.|+|.||++.|||++|+|+.+++++.+..+|+.|+.++ |.++..+|..++-....+.+ ++...
T Consensus 184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~~sLnyva 261 (292)
T KOG1681|consen 184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVEESLNYVA 261 (292)
T ss_pred chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999998 99999999988765555444 34555
Q ss_pred HhhcC
Q 026137 237 VFSNS 241 (243)
Q Consensus 237 ~~~~~ 241 (243)
.|.-+
T Consensus 262 twNms 266 (292)
T KOG1681|consen 262 TWNMS 266 (292)
T ss_pred HHHHH
Confidence 56543
No 75
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=2.2e-43 Score=321.51 Aligned_cols=216 Identities=17% Similarity=0.129 Sum_probs=186.8
Q ss_pred eeeeeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCCCc-cccCCChh
Q 026137 3 TSEKHGDVFVLTLTGSSNVDE-------------HRLGPSAIDSILSAIAQAKA-EATPGSAFITTSHGKF-FSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g~~-F~~G~D~~ 67 (243)
.++++++|++||||||+ +. |+|+.+|+.+|.+++.+++. |++++ +|||||.|+. ||+|.|+.
T Consensus 261 ~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl~ 337 (546)
T TIGR03222 261 AIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADAL 337 (546)
T ss_pred EEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCcc
Confidence 45678999999999998 88 99999999999999999994 59999 9999999987 99999998
Q ss_pred hHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE-CCccchhH-HHHHHhcCEEEE-------ecCccceeccc
Q 026137 68 WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAV-NGHAAAAG-FILALSHDYVVM-------RRDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v-~G~~~G~G-~~lal~~D~~ia-------~~~~a~f~~p~ 138 (243)
.... .. ...........++++.+|..+||||||+| ||+|+||| ++|+++||+||+ +++ ++|++||
T Consensus 338 ~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~e 411 (546)
T TIGR03222 338 LEAH----KD-HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLSE 411 (546)
T ss_pred cccc----cc-chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCCc
Confidence 4221 01 11112223445678899999999999999 89999999 999999999999 777 8999999
Q ss_pred cccCCCCChhh-HHHHHHHh-CCHHHH--HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcch
Q 026137 139 VDIGLTLPDYC-AALFREKV-GSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEV 214 (243)
Q Consensus 139 ~~~G~~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~ 214 (243)
+++|+ +|++| +++|++++ | ..++ ++++++|++++|+||+++|||++++++ +++.+++.++++++++.+ |.+
T Consensus 412 ~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a 486 (546)
T TIGR03222 412 LNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PDA 486 (546)
T ss_pred ccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HHH
Confidence 99999 67766 57899998 9 8888 559999999999999999999999998 889999999999999998 999
Q ss_pred HHHHHHhhchhHHHHHhh
Q 026137 215 YAEIRKSLYPDLCGVLGL 232 (243)
Q Consensus 215 ~~~~K~~l~~~~~~~l~~ 232 (243)
++.+|+.++......++.
T Consensus 487 ~~~~K~~l~~~~~~~~~~ 504 (546)
T TIGR03222 487 LTGLEANLRFAGPETMET 504 (546)
T ss_pred HHHHHHHHhhcCCcChhh
Confidence 999999998765554443
No 76
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=2.2e-43 Score=322.47 Aligned_cols=216 Identities=14% Similarity=0.097 Sum_probs=185.8
Q ss_pred eeeeeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCC-CccccCCChh
Q 026137 3 TSEKHGDVFVLTLTGSSNVDE-------------HRLGPSAIDSILSAIAQAKA-EATPGSAFITTSHG-KFFSNGFDLA 67 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~-------------N~l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g-~~F~~G~D~~ 67 (243)
.++++++|++||||||+ +. |+||.+|+.+|.+++++++. |+++| +|||||.| +.||+|+|++
T Consensus 265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~ 341 (550)
T PRK08184 265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT 341 (550)
T ss_pred EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence 44567899999999997 77 68999999999999999996 79999 99999999 5999999987
Q ss_pred hHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC-CccchhH-HHHHHhcCEEEEe-------cCccceeccc
Q 026137 68 WAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN-GHAAAAG-FILALSHDYVVMR-------RDKGVLYMSE 138 (243)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~-G~~~G~G-~~lal~~D~~ia~-------~~~a~f~~p~ 138 (243)
.... . + ..........+++++.++.++||||||+|| |+|+||| ++|+++||+||++ ++ ++|++||
T Consensus 342 ~~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe 415 (550)
T PRK08184 342 LLAH--K-D--HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA 415 (550)
T ss_pred hhcc--c-c--hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence 4321 1 1 111122334556788899999999999997 9999999 9999999999999 76 8999999
Q ss_pred cccCCCCChhh-HHHHHHH-hCCHHHHHHH--HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcch
Q 026137 139 VDIGLTLPDYC-AALFREK-VGSATARRDV--LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEV 214 (243)
Q Consensus 139 ~~~G~~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~ 214 (243)
+++|+ +|++| +++|+++ +| ..+++++ +++|++++|+||+++|||++++|+ +++++++.++++++++.| |.+
T Consensus 416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a 490 (550)
T PRK08184 416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA 490 (550)
T ss_pred ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence 99999 67765 6799998 69 9989987 589999999999999999999998 889999999999999998 999
Q ss_pred HHHHHHhhchhHHHHHhh
Q 026137 215 YAEIRKSLYPDLCGVLGL 232 (243)
Q Consensus 215 ~~~~K~~l~~~~~~~l~~ 232 (243)
++.+|+.++....+.++.
T Consensus 491 ~~~~K~~l~~~~~~~~~~ 508 (550)
T PRK08184 491 LTGMEANLRFAGPETMET 508 (550)
T ss_pred HHHHHHHHHhcCCCCHHH
Confidence 999999998876555543
No 77
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=100.00 E-value=3.3e-43 Score=309.31 Aligned_cols=211 Identities=20% Similarity=0.234 Sum_probs=178.2
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++||||||+ +.|+||.+|+.+|.++++.++.|++++ +||++|.|++||+|+|++++..... ......
T Consensus 11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~ 86 (381)
T PLN02988 11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL 86 (381)
T ss_pred eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence 567788999999999998 899999999999999999999999999 9999999999999999998754211 111111
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~ 160 (243)
...++...+.+...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++.+| .
T Consensus 87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~ 163 (381)
T PLN02988 87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F 163 (381)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence 2223333345667889999999999999999999999999999999987 899999999999 67776 568888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhch
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYP 224 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~ 224 (243)
.++++++||++++|+||+++||++++|++ +++.+.+.+++ +++..+ +.++..+|+.+..
T Consensus 164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~~ 222 (381)
T PLN02988 164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYTQ 222 (381)
T ss_pred -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhhc
Confidence 58899999999999999999999999998 88999888887 666655 6667777777653
No 78
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.9e-42 Score=327.25 Aligned_cols=198 Identities=23% Similarity=0.347 Sum_probs=176.7
Q ss_pred ceee-eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSE-KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~-~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+.++ ++++|++||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||||.|++||+|+|++++..... .. ..
T Consensus 8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-~~-~~ 82 (715)
T PRK11730 8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA-AP-EE 82 (715)
T ss_pred EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc-CC-HH
Confidence 4456 47899999999998 899999999999999999999999999 9999999999999999998764211 11 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG- 159 (715)
T PRK11730 83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG- 159 (715)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence 23345566788899999999999999999999999999999999999987 999999999999 67766 578999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
..+|++++++|++++|+||+++||||+++|+ +++.+++.++|++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~ 207 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG 207 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999998 88999999999999865
No 79
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=100.00 E-value=7e-42 Score=277.09 Aligned_cols=195 Identities=29% Similarity=0.457 Sum_probs=176.9
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++++++|++|+||+|+ +.|++|.+|+++|.++++.++.|++++ +||+||.|+.||+|.|++++.+... . ...
T Consensus 1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~-~--~~~ 74 (195)
T cd06558 1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD-A--GEE 74 (195)
T ss_pred CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc-c--chh
Confidence 568899999999999996 699999999999999999999999999 9999999999999999999876422 1 113
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT 161 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~ 161 (243)
...+.+.+++++.++..+|||||+++||+|.|+|++++++||+||++++ ++|++||+++|+.+|+++..++++++| ..
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~~p~~g~~~~l~~~~g-~~ 152 (195)
T cd06558 75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVG-PA 152 (195)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCCCCCCcHHHHHHHHhC-HH
Confidence 5667888999999999999999999999999999999999999999987 899999999999444455689999999 99
Q ss_pred HHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137 162 ARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQL 205 (243)
Q Consensus 162 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~ 205 (243)
.+.+++++|++++++||+++|||+++++. +++.+++.++++++
T Consensus 153 ~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~ 195 (195)
T cd06558 153 RARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL 195 (195)
T ss_pred HHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence 99999999999999999999999999998 88999999998763
No 80
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=1.5e-41 Score=321.14 Aligned_cols=192 Identities=24% Similarity=0.389 Sum_probs=170.5
Q ss_pred eeee-eCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchH
Q 026137 3 TSEK-HGDVFVLTLTGS-SNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGAR 79 (243)
Q Consensus 3 ~~~~-~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~ 79 (243)
.+++ +++|++|||||| + +.|++|.+|+.+|.+++++++.|++++ +||++|. |++||+|+|++++..... .
T Consensus 8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~ 80 (708)
T PRK11154 8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A 80 (708)
T ss_pred EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence 4566 689999999999 6 889999999999999999999999999 8999886 489999999998754211 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccccCCCCChhh-HHHHHHHh
Q 026137 80 ERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYC-AALFREKV 157 (243)
Q Consensus 80 ~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~~G~~~p~~g-~~~l~~~~ 157 (243)
.....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ +++|++||+++|+ +|++| ++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v 159 (708)
T PRK11154 81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI 159 (708)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence 222334556778899999999999999999999999999999999999987 3689999999999 67765 67999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHH
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQ 204 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~ 204 (243)
| ..+|++++++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus 160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~ 204 (708)
T PRK11154 160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK 204 (708)
T ss_pred C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence 9 9999999999999999999999999999998 8899999999988
No 81
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=1.8e-41 Score=319.98 Aligned_cols=190 Identities=23% Similarity=0.375 Sum_probs=168.5
Q ss_pred eeeeCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEE-ecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 4 SEKHGDVFVLTLTGS-SNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFIT-TSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p-~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl-~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
.+.+++|++|||||| + +.|++|.+|+.+|.+++++++.|++++ +||+ +|.|++||+|+|++++..... ...
T Consensus 5 ~~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~ 77 (699)
T TIGR02440 5 TVREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGE 77 (699)
T ss_pred EEcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhH
Confidence 345789999999999 6 799999999999999999999999999 6765 788899999999998854211 122
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ +++|++||+++|+ +|++| ++++++++|
T Consensus 78 ~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG- 155 (699)
T TIGR02440 78 AKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG- 155 (699)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-
Confidence 3344556788899999999999999999999999999999999999976 4799999999999 67776 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHH
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGK 203 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~ 203 (243)
..++++++++|++++|+||+++||||+++|+ +++++++.++|+
T Consensus 156 ~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~ 198 (699)
T TIGR02440 156 VSTALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL 198 (699)
T ss_pred HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence 9999999999999999999999999999998 889999999998
No 82
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=100.00 E-value=2.3e-41 Score=298.55 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=170.5
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARER 81 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~ 81 (243)
|.++.++++.+||||||+ +.|++|.+|+.+|.++++.++.|++++ +|||+|.|++||+|+|++.+..... ..+...
T Consensus 44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~ 119 (407)
T PLN02851 44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE 119 (407)
T ss_pred eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence 457788999999999998 899999999999999999999999999 9999999999999999999865322 111233
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhH-HHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~~~g~~ 160 (243)
...++...+++...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+ +++++..| .
T Consensus 120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~ 196 (407)
T PLN02851 120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y 196 (407)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence 4456667788888999999999999999999999999999999999987 899999999999 688775 67888888 5
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
.++++++||++++|+||+++||+++++++ +++ +.+.+.+.++..
T Consensus 197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~ 240 (407)
T PLN02851 197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLT 240 (407)
T ss_pred -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhcc
Confidence 48999999999999999999999999998 666 666666666544
No 83
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-42 Score=272.14 Aligned_cols=210 Identities=19% Similarity=0.321 Sum_probs=193.2
Q ss_pred eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHH
Q 026137 6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHY 84 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~ 84 (243)
.+.||.+|.+|||. +.|+++.-|+++|.++++++..|+.+| +|++++. ++.||+|+|+++...+ + +.....
T Consensus 37 ~~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~M-s----~~Ev~~ 108 (291)
T KOG1679|consen 37 KDEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKTM-S----PSEVTR 108 (291)
T ss_pred CCCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhcC-C----HHHHHH
Confidence 47799999999998 999999999999999999999999999 8999886 6999999999998765 2 567788
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHHHH
Q 026137 85 MFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSATAR 163 (243)
Q Consensus 85 ~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~~a 163 (243)
|.+.+..++..+.++|.||||+|+|.++|||++++++||+|+|+++ ++++++|+++++ +|+.| +++|+|.+| ...+
T Consensus 109 fV~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~ala 185 (291)
T KOG1679|consen 109 FVNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALA 185 (291)
T ss_pred HHHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHH
Confidence 9999999999999999999999999999999999999999999987 999999999999 78876 579999999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCCh---hHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHH
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDSE---ERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCG 228 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~---~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~ 228 (243)
+|+++|++.+++.||...|||+.+|... |...++++++|++|..+. |.+++..|..++..+.-
T Consensus 186 KELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~ev 251 (291)
T KOG1679|consen 186 KELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEV 251 (291)
T ss_pred HhHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCcee
Confidence 9999999999999999999999999763 367888999999999887 89999999999876543
No 84
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=6.2e-41 Score=316.40 Aligned_cols=197 Identities=20% Similarity=0.309 Sum_probs=174.8
Q ss_pred ceeee-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEK-HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~-~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+.++. +++|++|+||||+ +.|++|.+|+.+|.+++++++.|++++ +|||+|.|++||+|+|++++..... .. ..
T Consensus 8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~ 82 (714)
T TIGR02437 8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA 82 (714)
T ss_pred EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence 45553 7899999999998 899999999999999999999999999 9999999999999999999864211 11 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGS 159 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~ 159 (243)
....+.+..++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG- 159 (714)
T TIGR02437 83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG- 159 (714)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence 23344556788999999999999999999999999999999999999987 999999999999 78876 579999999
Q ss_pred HHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 160 ATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
..+|++++++|++++|+||+++||||++++. +++.+++.++++++..
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~ 206 (714)
T TIGR02437 160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN 206 (714)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999998 8899999999988543
No 85
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=2e-40 Score=313.59 Aligned_cols=199 Identities=24% Similarity=0.355 Sum_probs=173.0
Q ss_pred ceeeeeCCEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVD-EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~-~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
+.++++++|++||||+|+ + .|++|.+|+.+|.+++++++.|++++++||+||.|++||+|+|++++..... ..
T Consensus 15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~ 88 (737)
T TIGR02441 15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ 88 (737)
T ss_pred EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence 567889999999999994 3 7999999999999999999999999934567999999999999999864211 22
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCc-cceeccccccCCCCChhh-HHHHHHHhC
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDK-GVLYMSEVDIGLTLPDYC-AALFREKVG 158 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~-a~f~~p~~~~G~~~p~~g-~~~l~~~~g 158 (243)
....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| ++++++++|
T Consensus 89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG 167 (737)
T TIGR02441 89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG 167 (737)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence 334455667889999999999999999999999999999999999999873 589999999999 68776 579999999
Q ss_pred CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCCh------------hHHHHHHHHHHHHHhcC
Q 026137 159 SATARRDVLLRAKKIKGEEALRMGLVEAAYDSE------------ERVAEASMRLGKQLAGR 208 (243)
Q Consensus 159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~------------~~l~~~a~~~a~~~~~~ 208 (243)
..+|++++++|++++|+||+++||||+++++. +++.+.|.+++++++..
T Consensus 168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~ 228 (737)
T TIGR02441 168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG 228 (737)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999861 45788888888777543
No 86
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=5.9e-40 Score=265.76 Aligned_cols=222 Identities=21% Similarity=0.312 Sum_probs=196.9
Q ss_pred ceeeeeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcch--
Q 026137 2 CTSEKHGDVFVLTLT-GSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGA-- 78 (243)
Q Consensus 2 i~~~~~~~v~~i~ln-~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~-- 78 (243)
+.+++++|++.|.+| ||. +.|+++.+++.++..+++.+.+|+++. +++++|.|++||+|.|+..+......+..
T Consensus 9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~~d~~~~ 85 (266)
T KOG0016|consen 9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALDDDANEE 85 (266)
T ss_pred eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCCCccccc
Confidence 467889999999999 998 899999999999999999999999987 99999999999999999988775331111
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHh
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKV 157 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~ 157 (243)
......+...+..++..+.++|||+||+|||+++|.|..+...||+++|++ +++|..|+..+|. .|.++ ++.+|.+|
T Consensus 86 ~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~D-ka~F~TPfa~lGq-~PEG~Ss~t~p~im 163 (266)
T KOG0016|consen 86 SDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASD-KAWFQTPFAKLGQ-SPEGCSSVTLPKIM 163 (266)
T ss_pred chhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEecc-ceEEeccchhcCC-CCCcceeeeehHhh
Confidence 112223334445588899999999999999999999999999999999995 5999999999999 57776 57999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHhh
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLGL 232 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~~ 232 (243)
| ...|.||++.|++++|+||.+.|||+++++. +++.+.+++.++++++.+ |.++...|++++..+.+++..
T Consensus 164 G-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~~ 234 (266)
T KOG0016|consen 164 G-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELIK 234 (266)
T ss_pred c-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999998 899999999999999987 999999999999988888774
No 87
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=100.00 E-value=6.8e-40 Score=298.63 Aligned_cols=203 Identities=17% Similarity=0.205 Sum_probs=169.5
Q ss_pred ceeeeeCCEEEEEEcCCCC--------CCCCCCCHHHHHHHHHHHHHHH-hcCCCCEEEEEecC-CCccccCCChhhHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSN--------VDEHRLGPSAIDSILSAIAQAK-AEATPGSAFITTSH-GKFFSNGFDLAWAQA 71 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~--------~~~N~l~~~~~~~l~~~l~~~~-~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~ 71 (243)
+.++++++|++||||||++ ++.|++|.+|+.+|.+++++++ .++++| +||+||. |++||+|.|++++..
T Consensus 13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~ 91 (546)
T TIGR03222 13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL 91 (546)
T ss_pred EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence 5678899999999999731 1679999999999999999999 789999 9999987 589999999998753
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccc-cCCCCChhh
Q 026137 72 AGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVD-IGLTLPDYC 149 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~-~G~~~p~~g 149 (243)
... ................+...+.++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +|++|
T Consensus 92 ~~~-~~~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~g 169 (546)
T TIGR03222 92 STH-AWKVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGTG 169 (546)
T ss_pred ccc-chhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCccc
Confidence 211 0001111111122234556778999999999999999999999999999999986 3799999997 999 67776
Q ss_pred -HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137 150 -AALFR--EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK 209 (243)
Q Consensus 150 -~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~ 209 (243)
..+++ +++| ..+|++++++|++++|+||+++||||++||+ +++.+++.++|+++++.+
T Consensus 170 g~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~ 230 (546)
T TIGR03222 170 GLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQS 230 (546)
T ss_pred hhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCC
Confidence 45676 7999 9999999999999999999999999999998 889999999999999986
No 88
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=100.00 E-value=3.4e-39 Score=294.88 Aligned_cols=202 Identities=17% Similarity=0.210 Sum_probs=168.5
Q ss_pred ceeeeeCCEEEEEEcCCCCC--------CCCCCCHHHHHHHHHHHHHHH-hcCCCCEEEEEecCC-CccccCCChhhHHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNV--------DEHRLGPSAIDSILSAIAQAK-AEATPGSAFITTSHG-KFFSNGFDLAWAQA 71 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~--------~~N~l~~~~~~~l~~~l~~~~-~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~ 71 (243)
+.++++++|++||||||+++ +.|++|.+|+.+|.+++++++ .+++++ +||+||.+ ++||+|.|++.+..
T Consensus 17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~ 95 (550)
T PRK08184 17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG 95 (550)
T ss_pred EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence 46778899999999976311 679999999999999999999 789999 99999974 99999999998754
Q ss_pred cCCCcchHHHHHHHH-HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecC-ccceeccccc-cCCCCChh
Q 026137 72 AGSRTGARERVHYMF-KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRD-KGVLYMSEVD-IGLTLPDY 148 (243)
Q Consensus 72 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~-~a~f~~p~~~-~G~~~p~~ 148 (243)
... .. ......+. .....+...+.++||||||+|||+|+|||++|+++||+||++++ +++|++||++ +|+ +|++
T Consensus 96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~ 172 (550)
T PRK08184 96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT 172 (550)
T ss_pred ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence 211 00 11111111 11223456788999999999999999999999999999999976 4789999997 999 6777
Q ss_pred h-HHHHH--HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137 149 C-AALFR--EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK 209 (243)
Q Consensus 149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~ 209 (243)
| ..+++ +++| ..++++++++|++++|+||+++||||++||+ +++.+++.++|++++..+
T Consensus 173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~ 234 (550)
T PRK08184 173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAAS 234 (550)
T ss_pred chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC
Confidence 6 56777 7799 9999999999999999999999999999998 899999999999999886
No 89
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=100.00 E-value=6.1e-40 Score=258.61 Aligned_cols=219 Identities=20% Similarity=0.335 Sum_probs=189.4
Q ss_pred ceeeee-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC--C-CccccCCChhhHHHcCCCcc
Q 026137 2 CTSEKH-GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH--G-KFFSNGFDLAWAQAAGSRTG 77 (243)
Q Consensus 2 i~~~~~-~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~--g-~~F~~G~D~~~~~~~~~~~~ 77 (243)
|++++. ++|+.|++|||+ ..|++.+....||.+++..+..|++|. |||+||. | .+||+|+|-+-........+
T Consensus 20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~ 96 (282)
T COG0447 20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD 96 (282)
T ss_pred eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence 567787 899999999999 999999999999999999999999999 9999984 4 99999999875543111011
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHh
Q 026137 78 ARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKV 157 (243)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~ 157 (243)
+...- .-..-++-+.|+.+||||||.|+|+++|||-.|-+.||+.||+++ +.|++...++|---+++|+.+|.|.+
T Consensus 97 d~~~~---rLnvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~V 172 (282)
T COG0447 97 DDGIP---RLNVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARIV 172 (282)
T ss_pred CccCc---ccchhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHHh
Confidence 11111 112344556788999999999999999999999999999999988 99999999999745788899999999
Q ss_pred CCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 158 GSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
| +++|+|+.+.++.++|+||+++|+||.|||. ++|++++.+|+++|..++ |.+++..|..++.+...-..
T Consensus 173 G-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad~DGlaG 242 (282)
T COG0447 173 G-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNADCDGLAG 242 (282)
T ss_pred h-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCCCchhhH
Confidence 9 9999999999999999999999999999998 899999999999999998 99999999999987655443
No 90
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=100.00 E-value=4.8e-35 Score=228.99 Aligned_cols=211 Identities=24% Similarity=0.335 Sum_probs=187.1
Q ss_pred eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137 4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH 83 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~ 83 (243)
++.+++|-.|+||+|. +.|.++..|+.+|.+.|....++.++| +|||+..|+.||+|-|++++... ++ .+.-.
T Consensus 36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e---~g-~d~ha 108 (287)
T KOG1682|consen 36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNE---PG-SDIHA 108 (287)
T ss_pred cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcC---cc-chHHH
Confidence 4567899999999998 899999999999999999999999999 99999999999999999999763 22 33334
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH
Q 026137 84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR 163 (243)
Q Consensus 84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a 163 (243)
..+....+++.-|+++|+|||+-|||++..+|+.|...||+++|+++ +.|..|...+|+ +....+.-+.|.++ +..+
T Consensus 109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva 185 (287)
T KOG1682|consen 109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA 185 (287)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence 55667788899999999999999999999999999999999999987 899999999999 65555567889999 9999
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHH
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLC 227 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~ 227 (243)
.+|++||++++++||+..||++++||. +++..++.+++..|..++ +..+..-|.-++++..
T Consensus 186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q~~ 246 (287)
T KOG1682|consen 186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQLA 246 (287)
T ss_pred HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 899999999999998887 6667777777666543
No 91
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=218.38 Aligned_cols=185 Identities=23% Similarity=0.269 Sum_probs=163.3
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHH
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARE 80 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~ 80 (243)
|.++..+...+||||||. ..|++|.+|...+.-.|..++.++.++ +||+.|. +++||+|+|+........ +++..
T Consensus 40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~ 115 (401)
T KOG1684|consen 40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP 115 (401)
T ss_pred eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence 456778889999999997 799999999999999999999999999 8999988 599999999986654422 33345
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 81 RVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 81 ~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
....++..-+.+...|.++.||.||.++|..+|||..|+..--||||+++ +.|.+||..+|+ +|+.|+.++..+++ .
T Consensus 116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlp-g 192 (401)
T KOG1684|consen 116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLP-G 192 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCc-c
Confidence 66778888999999999999999999999999999999999999999987 899999999999 89999765555554 4
Q ss_pred HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137 161 TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERV 194 (243)
Q Consensus 161 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l 194 (243)
..+.++.+||+++++.||+..||.+.-|++ +++
T Consensus 193 ~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l 225 (401)
T KOG1684|consen 193 YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKL 225 (401)
T ss_pred HHHHhhhhccceecchHHHHhcchhhccch-hhh
Confidence 777899999999999999999999999998 554
No 92
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.87 E-value=2e-21 Score=156.39 Aligned_cols=152 Identities=22% Similarity=0.252 Sum_probs=118.9
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137 10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|+++.+ ++..+...+.+.|+.++.++ ++ .|++. .=|.|+++.. .
T Consensus 1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~--------------------~ 47 (187)
T cd07020 1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDS--------------------T 47 (187)
T ss_pred CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHH--------------------H
Confidence 356777755 77788899999999998765 67 56663 2345554442 1
Q ss_pred HHHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh---------------hHH
Q 026137 90 RPLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY---------------CAA 151 (243)
Q Consensus 90 ~~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~---------------g~~ 151 (243)
..++..|..+|||||++++ |+|.|+|+.++++||+++++++ ++|+.++...+. .+.. ...
T Consensus 48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 125 (187)
T cd07020 48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR 125 (187)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence 2455567789999999999 9999999999999999999988 899999998554 3322 244
Q ss_pred HHHHHhCCH--HHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137 152 LFREKVGSA--TARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197 (243)
Q Consensus 152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~ 197 (243)
.++++.| . ..+++++++|+.|+++||+++||||+++++.+++...
T Consensus 126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~ 172 (187)
T cd07020 126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK 172 (187)
T ss_pred HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence 6888888 5 6889999999999999999999999999984356543
No 93
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.85 E-value=1.3e-20 Score=150.42 Aligned_cols=143 Identities=19% Similarity=0.204 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137 29 SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~ 108 (243)
..+.+|.++++++++|++++ +||+++ +|.|.|+.... .+.+++..+.+++|||||+++
T Consensus 22 ~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~ 79 (177)
T cd07014 22 VSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGG 79 (177)
T ss_pred cCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEEC
Confidence 45789999999999999999 899986 78898766421 234567778889999999999
Q ss_pred CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh-HH--------HHHHHhC-CHHHHHHHHhcCcCCCHHHH
Q 026137 109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AA--------LFREKVG-SATARRDVLLRAKKIKGEEA 178 (243)
Q Consensus 109 G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~eA 178 (243)
|.|.|+|+.++++||+++++++ ++|+.+.+..+. -+... .. .+++..| .....++++..|..++|++|
T Consensus 80 G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A 157 (177)
T cd07014 80 GNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA 157 (177)
T ss_pred CchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence 9999999999999999999987 899998776653 12111 11 2333333 15667888999999999999
Q ss_pred HHcCchhhhcCChhHHHH
Q 026137 179 LRMGLVEAAYDSEERVAE 196 (243)
Q Consensus 179 ~~~Glv~~vv~~~~~l~~ 196 (243)
++.||||++.+. +++.+
T Consensus 158 ~~~GLVD~v~~~-~e~~~ 174 (177)
T cd07014 158 KANGLVDSLGSF-DDAVA 174 (177)
T ss_pred HHcCCcccCCCH-HHHHH
Confidence 999999999986 66654
No 94
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.73 E-value=1.2e-17 Score=136.83 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=112.1
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137 9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
+|++|.++.|=....+..+..++.++.++|+++..||+++ +|||+ .||+|+|+..+..
T Consensus 1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~----------------- 58 (211)
T cd07019 1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV----------------- 58 (211)
T ss_pred CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence 4666776654322333334557899999999999999999 89996 7999999876432
Q ss_pred HHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCC--Chh-h----
Q 026137 89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTL--PDY-C---- 149 (243)
Q Consensus 89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~--p~~-g---- 149 (243)
+.+.+..+..++||+|+.++|.|.|+|+.|+++||.++++++ ++++...+ ++|+.+ +-. |
T Consensus 59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~ 137 (211)
T cd07019 59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADV 137 (211)
T ss_pred HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccC
Confidence 234566788899999999999999999999999999999987 66653221 223210 000 0
Q ss_pred ---------H-HHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHH
Q 026137 150 ---------A-ALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVA 195 (243)
Q Consensus 150 ---------~-~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~ 195 (243)
. ..+. |.+. +.. .+-+..|..+++++|++.||||++-.. ++..
T Consensus 138 ~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~~-~~~-l~~~~~~~~~~~~~A~~~GLvD~i~~~-~~~~ 207 (211)
T cd07019 138 SITRALPPEAQLGLQLSIENGYKRFITLVADARHST-PEQ-IDKIAQGHVWTGQDAKANGLVDSLGDF-DDAV 207 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHH-HHHhcCCcEEeHHHHHHcCCcccCCCH-HHHH
Confidence 0 0111 1222 222 334567889999999999999999876 5443
No 95
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.68 E-value=4e-16 Score=122.54 Aligned_cols=135 Identities=21% Similarity=0.212 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 105 (243)
+++.++.+|.+.|+.++.|+.++ .|++.. .|.|.|+... .++...+..++||||+
T Consensus 8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva 62 (161)
T cd00394 8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA 62 (161)
T ss_pred EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence 77789999999999999999999 788854 5777765432 3345566778899999
Q ss_pred EECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCCh----------hh---HHHHHHH------hCCHHHHHHH
Q 026137 106 AVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPD----------YC---AALFREK------VGSATARRDV 166 (243)
Q Consensus 106 ~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~----------~g---~~~l~~~------~g~~~~a~~l 166 (243)
.++|.|.++|+.|+++||.|++.++ +.|++.....+..... .- ...+... +. .....+.
T Consensus 63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~ 140 (161)
T cd00394 63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED 140 (161)
T ss_pred EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 9999999999999999999999987 8899887776552111 00 0112211 23 3446777
Q ss_pred HhcCcCCCHHHHHHcCchhhh
Q 026137 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+..+..++++||+++||||++
T Consensus 141 ~~~~~~~~a~eA~~~GLvD~i 161 (161)
T cd00394 141 IEKDLVLTAQEALEYGLVDAL 161 (161)
T ss_pred hcCCcEEcHHHHHHcCCcCcC
Confidence 888999999999999999975
No 96
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.66 E-value=7.9e-16 Score=125.89 Aligned_cols=149 Identities=19% Similarity=0.301 Sum_probs=107.4
Q ss_pred EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137 10 VFVLTLTGSSNVDEHRLG---PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF 86 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~---~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~ 86 (243)
|++|.++.+ ++ ..++.+|.++|+.++.|++++ +|++++ +|.|+|+....
T Consensus 2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~---------------- 53 (208)
T cd07023 2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE---------------- 53 (208)
T ss_pred EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence 677777765 44 789999999999999999999 899976 68898876521
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCC---------
Q 026137 87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTL--------- 145 (243)
Q Consensus 87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~--------- 145 (243)
.+.+.+..+..++|||||+++|.|.|+|+.++++||.++++++ +.|+...+ ++|+.+
T Consensus 54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K 131 (208)
T cd07023 54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGK 131 (208)
T ss_pred -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCc
Confidence 2244566778889999999999999999999999999999987 66653222 123310
Q ss_pred ----C--hh---hHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 146 ----P--DY---CAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 146 ----p--~~---g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
| .. .-..+. |.+. ... .+-+..|..+++++|++.||||++...
T Consensus 132 ~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~Va~~R~~~-~~~-~~~~~~~~~~~a~~A~~~gLiD~i~~~ 200 (208)
T cd07023 132 DKGSPDRPLTEEERAILQALVDDIYDQFVDVVAEGRGMS-GER-LDKLADGRVWTGRQALELGLVDELGGL 200 (208)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHH-HHHhcCCcEEEHHHHHHcCCCcccCCH
Confidence 0 00 000111 1111 222 233567889999999999999999865
No 97
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.65 E-value=2e-15 Score=123.99 Aligned_cols=145 Identities=26% Similarity=0.248 Sum_probs=99.2
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026137 22 DEHR-LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLP 100 (243)
Q Consensus 22 ~~N~-l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 100 (243)
..|+ ++..++.+|.++|++++.|++++ +||++. +|.|.++... ..+.+.+..+.. +
T Consensus 17 ~~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~-----------------~~l~~~l~~~~~-~ 73 (214)
T cd07022 17 WLEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGV-----------------FELADAIRAARA-G 73 (214)
T ss_pred cccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHH-----------------HHHHHHHHHHhc-C
Confidence 3454 56789999999999999999999 888864 6667654432 122333444444 6
Q ss_pred CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC--------C-----C--hhh--H-
Q 026137 101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT--------L-----P--DYC--A- 150 (243)
Q Consensus 101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~--------~-----p--~~g--~- 150 (243)
|||||+++|.|.|+|+.++++||.++++++ +.|+...+. +|+. + | .+. .
T Consensus 74 KpViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~r 152 (214)
T cd07022 74 KPIVAFVNGLAASAAYWIASAADRIVVTPT-AGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEAR 152 (214)
T ss_pred CCEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHH
Confidence 999999999999999999999999999987 776544332 2221 0 0 000 0
Q ss_pred HHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137 151 ALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERV 194 (243)
Q Consensus 151 ~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l 194 (243)
..+. |.+. ....++++ |..+++++|++.||||++... +++
T Consensus 153 e~~~~~l~~~~~~f~~~V~~~R~~~-~~~~~~~~--~~~~~~~~Al~~gLvD~i~~~-~~~ 209 (214)
T cd07022 153 ARLQAEVDALYAMFVAAVARNRGLS-AAAVRATE--GGVFRGQEAVAAGLADAVGTL-DDA 209 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHHhh--cCeeeHHHHHHcCCCcccCCH-HHH
Confidence 0111 1222 33334444 999999999999999999876 444
No 98
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.61 E-value=3.4e-15 Score=138.77 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=122.6
Q ss_pred eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137 6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~ 85 (243)
.+++|++|+++.+-....+..+....+.+.+.|+++..|++++ +||++-. |.|++...
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~a----------------- 363 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFA----------------- 363 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHH-----------------
Confidence 4678999999976311234344445678889999999999999 8998743 33332221
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccce------eccc------cccCCCCChhh-HH-
Q 026137 86 FKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVL------YMSE------VDIGLTLPDYC-AA- 151 (243)
Q Consensus 86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f------~~p~------~~~G~~~p~~g-~~- 151 (243)
.+.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+ +.+. .++|+. |... ..
T Consensus 364 se~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi~-~~~~~t~~ 441 (584)
T TIGR00705 364 SEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGVH-VDGVSTHE 441 (584)
T ss_pred HHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCCc-eEEEeccC
Confidence 112233445566788999999999999999999999999999987 555 4442 467874 3322 11
Q ss_pred ---------------------------HHHHHhCCHHH-----HHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137 152 ---------------------------LFREKVGSATA-----RRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM 199 (243)
Q Consensus 152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~ 199 (243)
.+..+++ ..+ +.+.+.+|+.++++||+++||||++-. + ++|.
T Consensus 442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~----~-~~Ai 515 (584)
T TIGR00705 442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG----L-DEAV 515 (584)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC----H-HHHH
Confidence 1223454 444 667888999999999999999999943 2 6677
Q ss_pred HHHHHHhcC
Q 026137 200 RLGKQLAGR 208 (243)
Q Consensus 200 ~~a~~~~~~ 208 (243)
+.|+++++.
T Consensus 516 ~~a~~la~~ 524 (584)
T TIGR00705 516 AKAAKLAHC 524 (584)
T ss_pred HHHHHHcCC
Confidence 788888876
No 99
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=99.59 E-value=7.7e-15 Score=115.20 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137 29 SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~ 108 (243)
.+.+.+.+.|+.++.++.+ .+.+.+.| +++.. ...++..|..+|||||+.++
T Consensus 15 ~~~~~~~~~l~~~~~~~~i--~l~inspG------G~~~~--------------------~~~i~~~i~~~~~pvi~~v~ 66 (160)
T cd07016 15 VTAKEFKDALDALGDDSDI--TVRINSPG------GDVFA--------------------GLAIYNALKRHKGKVTVKID 66 (160)
T ss_pred cCHHHHHHHHHhccCCCCE--EEEEECCC------CCHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence 5778888999988887443 45554444 33221 23466677888999999999
Q ss_pred CccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhh----------------HHHHHHHhCC-HHHHHHHHhcCc
Q 026137 109 GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC----------------AALFREKVGS-ATARRDVLLRAK 171 (243)
Q Consensus 109 G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~ 171 (243)
|.|.|+|+.++++||.|+++++ ++|+++....+. .+... ...+.++.|. .....+++..+.
T Consensus 67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~ 144 (160)
T cd07016 67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET 144 (160)
T ss_pred chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence 9999999999999999999988 889987776555 33221 2236677774 256666666677
Q ss_pred CCCHHHHHHcCchhhh
Q 026137 172 KIKGEEALRMGLVEAA 187 (243)
Q Consensus 172 ~~~a~eA~~~Glv~~v 187 (243)
.++++||+++||||+|
T Consensus 145 ~l~a~eA~~~GliD~v 160 (160)
T cd07016 145 WLTAQEAVELGFADEI 160 (160)
T ss_pred ECcHHHHHHcCCCCcC
Confidence 8999999999999985
No 100
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.59 E-value=1.5e-14 Score=118.17 Aligned_cols=154 Identities=17% Similarity=0.275 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137 10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|++|+++.+ ++ ....+|.++|+.+..|++++ +||++. .|.|+++...
T Consensus 2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~-------------------- 48 (207)
T TIGR00706 2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS-------------------- 48 (207)
T ss_pred EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence 678888876 32 34678999999999999999 899976 4777766532
Q ss_pred HHHHHHHhcCC--CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCCC----------
Q 026137 90 RPLVAAMMDLP--MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLTL---------- 145 (243)
Q Consensus 90 ~~l~~~l~~~~--kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~~---------- 145 (243)
.++...|..++ ||+|+.++|.|.|+|+.++++||.++++++ +.++...+. +|+.+
T Consensus 49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~ 127 (207)
T TIGR00706 49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD 127 (207)
T ss_pred HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence 23344455555 999999999999999999999999999987 666543332 33310
Q ss_pred ---C-----hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHH
Q 026137 146 ---P-----DYCAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMR 200 (243)
Q Consensus 146 ---p-----~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~ 200 (243)
| .-.-..+. |.+. ....+ -+..|+.+++++|++.||||++... +++.+.+.+
T Consensus 128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~ 204 (207)
T TIGR00706 128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVK-KFADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE 204 (207)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHH-HHhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence 0 00001111 2222 33323 3567899999999999999999876 555544433
No 101
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.51 E-value=4.1e-13 Score=106.87 Aligned_cols=152 Identities=24% Similarity=0.318 Sum_probs=107.2
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHH
Q 026137 10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSF 89 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~ 89 (243)
|.+|.++.+ +++.....+.++|+++++++ +. .|++. .=|.|+++. ..
T Consensus 1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~----inspGG~v~--------------------~~ 47 (178)
T cd07021 1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLD----IDTPGGRVD--------------------SA 47 (178)
T ss_pred CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEE----EECcCCCHH--------------------HH
Confidence 356777765 77888899999999999886 55 55553 334455433 23
Q ss_pred HHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChh-----hHH------HHHHHhC
Q 026137 90 RPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDY-----CAA------LFREKVG 158 (243)
Q Consensus 90 ~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~-----g~~------~l~~~~g 158 (243)
..++..|..+|+|||+.|+|.|.|+|+.++++||+++++++ +.++.++.-.+. ..+. -.. -+.++-|
T Consensus 48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~-~~~~~~~K~~~~~~~~~~~~A~~~g 125 (178)
T cd07021 48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD-GNGAADEKVQSYWRAKMRAAAEKKG 125 (178)
T ss_pred HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC-CccchhHHHHHHHHHHHHHHHHHhC
Confidence 55667788899999999999999999999999999999988 889877554221 1100 000 1223334
Q ss_pred -CHHHHHHHHhcC-------------cCCCHHHHHHcCchhhhcCChhHHHH
Q 026137 159 -SATARRDVLLRA-------------KKIKGEEALRMGLVEAAYDSEERVAE 196 (243)
Q Consensus 159 -~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~vv~~~~~l~~ 196 (243)
....+..|+-.. -.++++||++.|++|.+.++.++|+.
T Consensus 126 r~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~ 177 (178)
T cd07021 126 RDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV 177 (178)
T ss_pred CCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence 234455555444 26999999999999999998666653
No 102
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.43 E-value=1.6e-12 Score=107.35 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 105 (243)
-+..++.++.++|+++..|++|+ +||++..+..| ++.+++++ .+.+..+...+|||||
T Consensus 26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia 83 (222)
T cd07018 26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA 83 (222)
T ss_pred cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence 34678899999999999999999 89999876555 54444433 3444556667999999
Q ss_pred EECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCCCC--------hhhHH------------HH
Q 026137 106 AVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLTLP--------DYCAA------------LF 153 (243)
Q Consensus 106 ~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~~p--------~~g~~------------~l 153 (243)
.++| |.++|+.++++||.+++.+. +.++...+. +|+.+- ..+.. .+
T Consensus 84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~ 161 (222)
T cd07018 84 YADG-YSQGQYYLASAADEIYLNPS-GSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQT 161 (222)
T ss_pred EeCC-CCchhhhhhhhCCEEEECCC-ceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHH
Confidence 9998 88999999999999999987 777764332 222100 00000 01
Q ss_pred H-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137 154 R-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197 (243)
Q Consensus 154 ~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~ 197 (243)
. |.+. ....+ -+..|..+++++|++.||||++... +++.+.
T Consensus 162 ~~~l~~~~~~f~~~Va~~R~~~-~~~~~-~~~~~~~~~~~~A~~~GLvD~i~~~-~e~~~~ 219 (222)
T cd07018 162 QALLDSLWDQYLADVAASRGLS-PDALE-ALIDLGGDSAEEALEAGLVDGLAYR-DELEAR 219 (222)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC-HHHHH-HHHHcCCcHHHHHHHCCCCCcCCcH-HHHHHH
Confidence 1 1122 33333 3456999999999999999999976 555544
No 103
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=99.26 E-value=3e-10 Score=89.69 Aligned_cols=151 Identities=19% Similarity=0.239 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 11 FVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
.+|.++.+ +++.+...|.+.++.++++ ..+ .|++. .=|.|+++.. ..
T Consensus 2 ~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~--------------------~~ 48 (172)
T cd07015 2 YVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADA--------------------AG 48 (172)
T ss_pred EEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHH--------------------HH
Confidence 45666654 7788888999999999875 456 56663 3455554443 23
Q ss_pred HHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceeccccccCCCCC-------h-hh-HH------H
Q 026137 91 PLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLP-------D-YC-AA------L 152 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p-------~-~g-~~------~ 152 (243)
.++..|...++||++.++ |.|.++|..++++||.+++.++ +.++....-.|. .+ + -- .. -
T Consensus 49 ~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r~ 126 (172)
T cd07015 49 NIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIKS 126 (172)
T ss_pred HHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHHH
Confidence 455667778999999999 9999999999999999999998 788866654332 12 0 00 11 1
Q ss_pred HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137 153 FREKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAE 196 (243)
Q Consensus 153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~ 196 (243)
+.++-| ....+..++.....++++||+++|+||.++++.++|+.
T Consensus 127 ~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~ 171 (172)
T cd07015 127 LAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK 171 (172)
T ss_pred HHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence 223333 23456777778888999999999999999998776653
No 104
>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=99.08 E-value=6.1e-11 Score=101.85 Aligned_cols=187 Identities=13% Similarity=0.065 Sum_probs=150.9
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC-CccccCCChhhHHHcCCCcchHHHHHHHHH
Q 026137 9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG-KFFSNGFDLAWAQAAGSRTGARERVHYMFK 87 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g-~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~ 87 (243)
++..++++ | ..|..|.++..++...|++++.+..++ +..+|+.. +.|++|.|..+..... ......++-
T Consensus 66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m 135 (380)
T KOG1683|consen 66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM 135 (380)
T ss_pred ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence 77888888 6 689999999999999999999988888 78888876 9999999999886531 344556778
Q ss_pred HHHHHHHHHhcCCCcEEEEECCccchhH--HHHHHhcCEEEEecCccce-eccccccCCCCChhhHHHHHHHhCCHHHHH
Q 026137 88 SFRPLVAAMMDLPMPTVAAVNGHAAAAG--FILALSHDYVVMRRDKGVL-YMSEVDIGLTLPDYCAALFREKVGSATARR 164 (243)
Q Consensus 88 ~~~~l~~~l~~~~kp~Ia~v~G~~~G~G--~~lal~~D~~ia~~~~a~f-~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~ 164 (243)
.+++++....+++.|+.+++||.+--++ +-++-+|+|++..--..++ +..+..+++..|.+-...+...+| ...+-
T Consensus 136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~ 214 (380)
T KOG1683|consen 136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE 214 (380)
T ss_pred HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence 8999999999999999999999998887 8899999999986322233 677778885578887766666666 55555
Q ss_pred HHHhcCcCCCHHHHHHcCchhhhcCC-hhHHHHHHHHHHHHHh
Q 026137 165 DVLLRAKKIKGEEALRMGLVEAAYDS-EERVAEASMRLGKQLA 206 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~l~~~a~~~a~~~~ 206 (243)
.-+..+.-++..||++.|+++++.+. .+++.+....-.+...
T Consensus 215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~k 257 (380)
T KOG1683|consen 215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGK 257 (380)
T ss_pred HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccC
Confidence 56778899999999999999999995 5667666655544433
No 105
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=99.01 E-value=1.1e-08 Score=80.48 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 105 (243)
++..+.+++.+.|..++.++..+ .|++. .=|.|+++.. ...++..+..+++|+++
T Consensus 9 I~~~~~~~~~~~L~~l~~~~~~~-~i~l~----InSpGG~v~~--------------------~~~i~~~i~~~~~~v~~ 63 (162)
T cd07013 9 VEDISANQFAAQLLFLGAVNPEK-DIYLY----INSPGGDVFA--------------------GMAIYDTIKFIKADVVT 63 (162)
T ss_pred ECcHHHHHHHHHHHHHhcCCCCC-CEEEE----EECCCCcHHH--------------------HHHHHHHHHhcCCCceE
Confidence 67789999999999999886665 34442 2344444322 23456667778899999
Q ss_pred EECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-HH---------------HHHHHhCC-HHHHHHH
Q 026137 106 AVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-AA---------------LFREKVGS-ATARRDV 166 (243)
Q Consensus 106 ~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~~---------------~l~~~~g~-~~~a~~l 166 (243)
.+.|.|.++|.-+++++| .|++.++ +.+.+....-+. ..... .. .+.++-|. .....++
T Consensus 64 ~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 141 (162)
T cd07013 64 IIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHAD 141 (162)
T ss_pred EEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 999999999999999999 6888787 667653322222 11110 11 11122231 3344455
Q ss_pred HhcCcCCCHHHHHHcCchhhh
Q 026137 167 LLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~v 187 (243)
+-.+.-++|+||+++||||++
T Consensus 142 ~~~~~~~sa~eA~~~GliD~i 162 (162)
T cd07013 142 LERDTWLSAREAVEYGFADTI 162 (162)
T ss_pred HcCCccccHHHHHHcCCCCcC
Confidence 555556799999999999975
No 106
>PRK10949 protease 4; Provisional
Probab=98.99 E-value=7.8e-09 Score=96.72 Aligned_cols=169 Identities=19% Similarity=0.232 Sum_probs=107.1
Q ss_pred eCCEEEEEEcCCCCC---CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHH
Q 026137 7 HGDVFVLTLTGSSNV---DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVH 83 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~---~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~ 83 (243)
++.|++|+++.+=.. ..+.++ -+.+.+.|+++..|++++ +||++- =|.|+....
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~---~~~~~~~l~~a~~D~~vk-aVvLrI----nSpGGs~~a--------------- 381 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVG---GDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTA--------------- 381 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcC---HHHHHHHHHHHHhCCCCc-EEEEEe----cCCCCcHHH---------------
Confidence 568899987643100 112233 357888999999999999 788864 344442221
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceecccc------------ccCCCCC-----
Q 026137 84 YMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEV------------DIGLTLP----- 146 (243)
Q Consensus 84 ~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~------------~~G~~~p----- 146 (243)
.+.+.+.+.++....||||+.+.|.|..||+-++++||.++|.+. +..+...+ ++|+..-
T Consensus 382 --se~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~ 458 (618)
T PRK10949 382 --SEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS 458 (618)
T ss_pred --HHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence 123444555566678999999999999999999999999999885 33332111 2343210
Q ss_pred ------------hhhHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137 147 ------------DYCAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197 (243)
Q Consensus 147 ------------~~g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~ 197 (243)
.-.-..+. |.+. .... +-+..|+.|++++|++.||||++-.- ++..
T Consensus 459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai-- 533 (618)
T PRK10949 459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAV-- 533 (618)
T ss_pred ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHH--
Confidence 00000111 2233 3333 34678999999999999999999765 4444
Q ss_pred HHHHHHHHhcC
Q 026137 198 SMRLGKQLAGR 208 (243)
Q Consensus 198 a~~~a~~~~~~ 208 (243)
+.|+++++.
T Consensus 534 --~~a~~~a~~ 542 (618)
T PRK10949 534 --AKAAELAKL 542 (618)
T ss_pred --HHHHHHcCC
Confidence 444444543
No 107
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.94 E-value=3.4e-08 Score=80.61 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
++..+..++...|..++..+..+. .|.|. |.|+++.. ...++..|..++.|++
T Consensus 44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~~--------------------g~~I~d~i~~~~~~v~ 97 (207)
T PRK12553 44 VDDASANDVMAQLLVLESIDPDRDITLYIN------SPGGSVTA--------------------GDAIYDTIQFIRPDVQ 97 (207)
T ss_pred ECHHHHHHHHHHHHHHHhCCCCCCEEEEEe------CCCCcHHH--------------------HHHHHHHHHhcCCCcE
Confidence 788999999999999997543331 34443 34444332 2345666777888999
Q ss_pred EEECCccchhHHHHHHhcC--EEEEecCccceecccccc-CCCCChh-h---------------HHHHHHHhCC-HHHHH
Q 026137 105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDI-GLTLPDY-C---------------AALFREKVGS-ATARR 164 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~-G~~~p~~-g---------------~~~l~~~~g~-~~~a~ 164 (243)
+.+.|.|.+.|..++++|| .|++.++ +.|.+..... |...... - ...+.++-|. .....
T Consensus 98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~ 176 (207)
T PRK12553 98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR 176 (207)
T ss_pred EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999 5899887 7777655432 2100000 0 1123334441 34555
Q ss_pred HHHhcCcCCCHHHHHHcCchhhhcCChhHH
Q 026137 165 DVLLRAKKIKGEEALRMGLVEAAYDSEERV 194 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l 194 (243)
+++-.+..++|+||+++||||+|+++.++|
T Consensus 177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl 206 (207)
T PRK12553 177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL 206 (207)
T ss_pred HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence 666678889999999999999999875443
No 108
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.93 E-value=1.2e-08 Score=82.87 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
++..+.+.+...|..++.++..+. .+.|.+ .|+++.. ...++..|...+.|++
T Consensus 40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InS------pGG~v~~--------------------g~~I~d~i~~~~~~v~ 93 (200)
T PRK00277 40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINS------PGGSVTA--------------------GLAIYDTMQFIKPDVS 93 (200)
T ss_pred ECHHHHHHHHHHHHHhhccCCCCCEEEEEEC------CCCcHHH--------------------HHHHHHHHHhcCCCEE
Confidence 788899999999998886543331 344433 3333322 2334556677788999
Q ss_pred EEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCC--CChhh--H-----------HHHHHHhC-CHHHHHHH
Q 026137 105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLT--LPDYC--A-----------ALFREKVG-SATARRDV 166 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~--~p~~g--~-----------~~l~~~~g-~~~~a~~l 166 (243)
+.+.|.|.+.|..++++++ .|++.++ +++.+....-|.. .-+.- + ..+..+-| ......++
T Consensus 94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~~ 172 (200)
T PRK00277 94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEKD 172 (200)
T ss_pred EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 9999999999999998753 5777766 5565433321210 00000 0 11233334 13444555
Q ss_pred HhcCcCCCHHHHHHcCchhhhcCC
Q 026137 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
+-.+.-++|+||+++||||+|+++
T Consensus 173 ~~~~~~lsa~EA~e~GliD~Ii~~ 196 (200)
T PRK00277 173 TDRDNFMSAEEAKEYGLIDEVLTK 196 (200)
T ss_pred hhCCccccHHHHHHcCCccEEeec
Confidence 566778999999999999999976
No 109
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.87 E-value=1.3e-07 Score=76.58 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=93.4
Q ss_pred CCHHHHHHHHHHHHHHHh-cCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKA-EATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~-~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
++..+...+...|..++. ++.-...+.|. |.|+++.. ...++..|..++.||+
T Consensus 32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN------SpGG~v~a--------------------g~aI~d~i~~~~~~V~ 85 (197)
T PRK14512 32 INKDLSELFQEKILLLEALDSKKPIFVYID------SEGGDIDA--------------------GFAIFNMIRFVKPKVF 85 (197)
T ss_pred EcHHHHHHHHHHHHHHHhcCCCCCEEEEEE------CCCCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence 778899999999988886 32211134443 44444332 2345666777899999
Q ss_pred EEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhh-HH---------------HHHHHhC-CHHHHHH
Q 026137 105 AAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYC-AA---------------LFREKVG-SATARRD 165 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g-~~---------------~l~~~~g-~~~~a~~ 165 (243)
+.+.|.|.+.|.-++++||- |++.++ +++......-++ ..... .. .+..+-| ......+
T Consensus 86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~ 163 (197)
T PRK14512 86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK 163 (197)
T ss_pred EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999999985 898887 666543332222 11111 00 1122233 1233445
Q ss_pred HHhcCcCCCHHHHHHcCchhhhcCChhHHHH
Q 026137 166 VLLRAKKIKGEEALRMGLVEAAYDSEERVAE 196 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~ 196 (243)
++-....++|+||+++||||+|+++.+++..
T Consensus 164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~ 194 (197)
T PRK14512 164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEE 194 (197)
T ss_pred hhhcCcccCHHHHHHcCCccEeecCcHHhHh
Confidence 5555667999999999999999988565544
No 110
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=98.84 E-value=8.4e-08 Score=76.06 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=97.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
.|.++.| ++.....++...+..++.++..+. .+.|. |.|+|+.. ..
T Consensus 11 ~i~i~g~-------I~~~~~~~i~~~l~~~~~~~~~~~i~l~in------SpGG~v~~--------------------~~ 57 (171)
T cd07017 11 IIFLGGP-------IDDEVANLIIAQLLYLESEDPKKPIYLYIN------SPGGSVTA--------------------GL 57 (171)
T ss_pred EEEEcCE-------EcHHHHHHHHHHHHHHHccCCCCceEEEEE------CCCCCHHH--------------------HH
Confidence 4566665 788899999999999998755441 33343 33444332 12
Q ss_pred HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCCh--hh-------------HHHH
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPD--YC-------------AALF 153 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~--~g-------------~~~l 153 (243)
.++..|..++.|+++.+.|.|.++|..+++++| .|++.++ ++|.+.+...+...+. .- ...+
T Consensus 58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 136 (171)
T cd07017 58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEIL 136 (171)
T ss_pred HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667899999999999999999999999 8999988 7887766655542110 00 0112
Q ss_pred HHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhh
Q 026137 154 REKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAA 187 (243)
Q Consensus 154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v 187 (243)
.++.|. .....+++-.+.-++++||+++||||+|
T Consensus 137 ~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V 171 (171)
T cd07017 137 AKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI 171 (171)
T ss_pred HHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence 233341 2344556667788999999999999986
No 111
>PRK11778 putative inner membrane peptidase; Provisional
Probab=98.82 E-value=8.1e-08 Score=83.09 Aligned_cols=163 Identities=20% Similarity=0.193 Sum_probs=95.5
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF 86 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~ 86 (243)
.+.|++|.++.+= ...-...+-+++...++.+..+ . .||++- =|.|+.+....
T Consensus 89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLri----dSpGG~v~~s~---------------- 141 (330)
T PRK11778 89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRL----ESPGGVVHGYG---------------- 141 (330)
T ss_pred CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEE----eCCCCchhHHH----------------
Confidence 4689999999762 1112223445555555544433 3 466642 33444332211
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC----------
Q 026137 87 KSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT---------- 144 (243)
Q Consensus 87 ~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~---------- 144 (243)
.....+.++....||+|+.+++.|..||+.++++||.+++.+. +..+...+- +|+.
T Consensus 142 -~a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK 219 (330)
T PRK11778 142 -LAASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK 219 (330)
T ss_pred -HHHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence 0111144566788999999999999999999999999999886 555543331 2221
Q ss_pred ---CC-----hhhHHHHH-----------HHhC--CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137 145 ---LP-----DYCAALFR-----------EKVG--SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM 199 (243)
Q Consensus 145 ---~p-----~~g~~~l~-----------~~~g--~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~ 199 (243)
-| .-+-..+. ..+- .+....+-+.+|+.+++++|++.||||++... +++...+.
T Consensus 220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~ 294 (330)
T PRK11778 220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELM 294 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHH
Confidence 00 00000111 1111 00111345678999999999999999999987 65544433
No 112
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.79 E-value=8.2e-07 Score=74.50 Aligned_cols=138 Identities=20% Similarity=0.251 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
-+++++-+....+.++.+.+..-+ +|-+--+++++. |.+-++ .-..+.+.+.+..+...++|+
T Consensus 77 G~~~~~g~rKa~R~~~lA~~~~lP--vV~lvDtpGa~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP~ 139 (256)
T PRK12319 77 GQPHPEGYRKALRLMKQAEKFGRP--VVTFINTAGAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVPI 139 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCCE
Confidence 358899999999999988876554 333333333332 332221 112345667777888999999
Q ss_pred EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137 104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ +.++ +..|.+.+..+-+.-.....+.+.+ .+++.++++.|+
T Consensus 140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~-------v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~ 207 (256)
T PRK12319 140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYA-------VLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGV 207 (256)
T ss_pred EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEE-------EcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCC
Confidence 999999999998888889999999998 6554 2235454444433222122223322 679999999999
Q ss_pred hhhhcCC
Q 026137 184 VEAAYDS 190 (243)
Q Consensus 184 v~~vv~~ 190 (243)
||+|++.
T Consensus 208 iD~ii~e 214 (256)
T PRK12319 208 VDKVIPE 214 (256)
T ss_pred CcEecCC
Confidence 9999975
No 113
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.72 E-value=1.3e-07 Score=82.18 Aligned_cols=163 Identities=21% Similarity=0.264 Sum_probs=101.5
Q ss_pred CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHH
Q 026137 9 DVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKS 88 (243)
Q Consensus 9 ~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~ 88 (243)
.|+.|.++.+=.-..+.+..-..+...+.|+.+..++.++ .|+|. .=|.|+..-. .+.
T Consensus 60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~----inSPGG~v~a-----------------s~~ 117 (317)
T COG0616 60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLR----INSPGGSVVA-----------------SEL 117 (317)
T ss_pred EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEE----EECcCCchhH-----------------HHH
Confidence 5788877755200011111224677888889999999999 56663 3444553322 123
Q ss_pred HHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhC----------
Q 026137 89 FRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVG---------- 158 (243)
Q Consensus 89 ~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g---------- 158 (243)
+.+.++++..-. ||++.|++.|..||+-++++||.+||++. +..|--.+..+. |.. ..+..+.|
T Consensus 118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~GSIGVi~~~--~~~--~~l~~k~Gv~~~~~~ag~ 191 (317)
T COG0616 118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITGSIGVISGA--PNF--EELLEKLGVEKEVITAGE 191 (317)
T ss_pred HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceeeeceeEEec--CCH--HHHHHhcCCceeeeeccc
Confidence 344455555555 99999999999999999999999999987 655533332221 111 11111111
Q ss_pred ---------------------------------------CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHH
Q 026137 159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASM 199 (243)
Q Consensus 159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~ 199 (243)
.......-+.+|+.+++++|++.||||++-.. ++....+.
T Consensus 192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~ 270 (317)
T COG0616 192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA 270 (317)
T ss_pred cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence 01112446788999999999999999999876 43433333
Q ss_pred H
Q 026137 200 R 200 (243)
Q Consensus 200 ~ 200 (243)
+
T Consensus 271 ~ 271 (317)
T COG0616 271 E 271 (317)
T ss_pred H
Confidence 3
No 114
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=98.71 E-value=8.4e-08 Score=76.79 Aligned_cols=143 Identities=18% Similarity=0.274 Sum_probs=96.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
+|.|+.| +|.++...+.+.|..++.++..+- .|.|. |.|+|+.. ..
T Consensus 18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~IN------SpGG~v~~--------------------g~ 64 (182)
T PF00574_consen 18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYIN------SPGGDVDA--------------------GL 64 (182)
T ss_dssp EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEEE------ECEBCHHH--------------------HH
T ss_pred EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEEc------CCCCccHH--------------------HH
Confidence 4567776 899999999999888854433221 24443 45555443 24
Q ss_pred HHHHHHhcCCCcEEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhhHH-----------------
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYCAA----------------- 151 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g~~----------------- 151 (243)
.++..|..++.|+++.+.|.|.+.|.-++++||. |++.++ +.|.+.+...+. ++....
T Consensus 65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~--~g~~~~l~~~~~~l~~~~~~~~~ 141 (182)
T PF00574_consen 65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS--GGNASELREQAKELEKLNERIAN 141 (182)
T ss_dssp HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE--EEEHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec--ccccchhHHHHHHHHHHHHHHHH
Confidence 4666778889999999999999999999999999 899998 888877776554 221111
Q ss_pred HHHHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 152 LFREKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 152 ~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
.+..+.|. .....+++-...-++++||+++||||+|+.+
T Consensus 142 ~~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~ 181 (182)
T PF00574_consen 142 IYAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES 181 (182)
T ss_dssp HHHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred HHHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence 11123331 2333444444555899999999999999864
No 115
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.60 E-value=5.9e-06 Score=71.09 Aligned_cols=137 Identities=16% Similarity=0.219 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
.++++-+....+.++.+++..-+- +-++-+ +++++ |.+-++. -..+.+.+.+..+.....|+|
T Consensus 134 ~~~p~g~rKa~Rlm~lA~~f~lPI-ItlvDT-pGA~~-G~~AE~~--------------G~~~aiar~l~~~a~~~VP~I 196 (322)
T CHL00198 134 MPSPGGYRKALRLMKHANKFGLPI-LTFIDT-PGAWA-GVKAEKL--------------GQGEAIAVNLREMFSFEVPII 196 (322)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEeC-CCcCc-CHHHHHH--------------hHHHHHHHHHHHHHcCCCCEE
Confidence 588999999999999998765543 333333 33333 3322211 123445666677788999999
Q ss_pred EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137 105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ ++++ +..|-+.+..+-+. ..++.+ ....-.++|+++++.|+|
T Consensus 197 sVViGeggsGGAlal~~aD~V~m~e~-a~~s-------VisPEg~a~Il~~d---~~~a~~-aA~~~~ita~dL~~~gii 264 (322)
T CHL00198 197 CTIIGEGGSGGALGIGIGDSIMMLEY-AVYT-------VATPEACAAILWKD---SKKSLD-AAEALKITSEDLKVLGII 264 (322)
T ss_pred EEEeCcccHHHHHhhhcCCeEEEeCC-eEEE-------ecCHHHHHHHHhcc---hhhHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999998888765566999999998 6664 22455555554433 223333 334567999999999999
Q ss_pred hhhcCC
Q 026137 185 EAAYDS 190 (243)
Q Consensus 185 ~~vv~~ 190 (243)
|+|+|.
T Consensus 265 D~ii~E 270 (322)
T CHL00198 265 DEIIPE 270 (322)
T ss_pred eEeccC
Confidence 999975
No 116
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.59 E-value=1.5e-05 Score=68.73 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
+++++-+....+.++.+++-.-+ +|-+--++++++ |.+-++ .-..+.+.+.+..+....+|+|
T Consensus 131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I 193 (319)
T PRK05724 131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII 193 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence 57899999999999988876544 344433333333 432221 1123456677788889999999
Q ss_pred EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137 105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ +.++ +..|.+.+..+-+.- .++.+..- ...+++.++++.|+|
T Consensus 194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~---~~a~~aae-~~~ita~~l~~~g~i 261 (319)
T PRK05724 194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDA---SKAPEAAE-AMKITAQDLKELGII 261 (319)
T ss_pred EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCc---hhHHHHHH-HcCCCHHHHHHCCCc
Confidence 99999998888766667999999988 6654 324555555544432 22333222 556899999999999
Q ss_pred hhhcCC
Q 026137 185 EAAYDS 190 (243)
Q Consensus 185 ~~vv~~ 190 (243)
|+|++.
T Consensus 262 D~II~E 267 (319)
T PRK05724 262 DEIIPE 267 (319)
T ss_pred eEeccC
Confidence 999975
No 117
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=98.57 E-value=2.9e-06 Score=68.80 Aligned_cols=138 Identities=9% Similarity=0.041 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
+|.++.+++...|-.++.++..+ ..+.|.+. |+++.. ...++..+...+.||.
T Consensus 39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSp------GG~v~~--------------------g~aIyd~m~~~~~~V~ 92 (200)
T CHL00028 39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSP------GGSVIS--------------------GLAIYDTMQFVKPDVH 92 (200)
T ss_pred ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCC------Ccchhh--------------------HHHHHHHHHhcCCCEE
Confidence 89999999999999988543222 13445443 343321 2346667788999999
Q ss_pred EEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCCCChhh-H---------------HHHHHHhCC-HHHHHH
Q 026137 105 AAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLTLPDYC-A---------------ALFREKVGS-ATARRD 165 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~~p~~g-~---------------~~l~~~~g~-~~~a~~ 165 (243)
..+-|.|.+.|.-+++++| .|++.++ ++|.+.....|....... . ..+..+-|. .....+
T Consensus 93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~ 171 (200)
T CHL00028 93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE 171 (200)
T ss_pred EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999999999999999999 6999988 777765554441111110 0 111223331 223344
Q ss_pred HHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 166 VLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 166 l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
++-...-++|+||+++||||+|+++
T Consensus 172 ~~~r~~~lta~EA~eyGliD~I~~~ 196 (200)
T CHL00028 172 DMERDVFMSATEAKAYGIVDLVAVN 196 (200)
T ss_pred HhhcCccCCHHHHHHcCCCcEEeec
Confidence 4555566999999999999999976
No 118
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=98.57 E-value=2e-06 Score=69.35 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=92.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
+|.++.| ++..+.+++...|..++.++..+. .+.|. |.|+|+.. ..
T Consensus 28 iI~l~g~-------I~~~~~~~ii~~L~~l~~~~~~~~i~l~In------SpGG~v~~--------------------g~ 74 (191)
T TIGR00493 28 IIFLSGE-------VNDSVANLIVAQLLFLEAEDPEKDIYLYIN------SPGGSITA--------------------GL 74 (191)
T ss_pred EEEEccE-------EChHHHHHHHHHHHHhhccCCCCCEEEEEE------CCCCCHHH--------------------HH
Confidence 3455655 778888999999988887554331 23333 33444432 23
Q ss_pred HHHHHHhcCCCcEEEEECCccchhHHHHHHhcC--EEEEecCccceeccccccCCC--CChhh--H-----------HHH
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSHD--YVVMRRDKGVLYMSEVDIGLT--LPDYC--A-----------ALF 153 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D--~~ia~~~~a~f~~p~~~~G~~--~p~~g--~-----------~~l 153 (243)
.++..+..++.|+...+.|.|.+.|.-+++++| .|++.++ ++|.+.+..-|.. ..+.. + ..+
T Consensus 75 ~I~d~l~~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~y 153 (191)
T TIGR00493 75 AIYDTMQFIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDIL 153 (191)
T ss_pred HHHHHHHhcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHH
Confidence 344556666777877788999999998888765 6999988 7787654432220 11111 0 112
Q ss_pred HHHhCC-HHHHHHHHhcCcCCCHHHHHHcCchhhhcC
Q 026137 154 REKVGS-ATARRDVLLRAKKIKGEEALRMGLVEAAYD 189 (243)
Q Consensus 154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~ 189 (243)
.++-|. .....+++-.+.-++|+||+++||||+|+.
T Consensus 154 a~~tg~~~~~i~~~~~~~~~lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 154 ANHTGQSLEQIEKDTERDFFMSAEEAKEYGLIDSVLT 190 (191)
T ss_pred HHHHCcCHHHHHHHhhCCccCcHHHHHHcCCccEEec
Confidence 334441 344556666677799999999999999875
No 119
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.56 E-value=1.1e-05 Score=71.19 Aligned_cols=137 Identities=18% Similarity=0.269 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
.+++++-+....+.++.++...-+- +-++-. ++++ .|.+.++ .-....+.+.+..+....+|+
T Consensus 200 G~~~peGyRKAlR~mklAekf~lPI-VtLVDT-pGA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPi 262 (431)
T PLN03230 200 AMPQPNGYRKALRFMRHAEKFGFPI-LTFVDT-PGAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPI 262 (431)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEeC-CCcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCE
Confidence 3588999999999999998765543 333322 2222 3332222 112345666777888999999
Q ss_pred EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHH-HhCCHHHHHHHHhcCcCCCHHHHHHcC
Q 026137 104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE-KVGSATARRDVLLRAKKIKGEEALRMG 182 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~-~~g~~~~a~~l~l~g~~~~a~eA~~~G 182 (243)
|++|-|.+.+||.....+||++++.++ ++++ +..|.+.+..+-+ ..- ...+.+ .-.++++++++.|
T Consensus 263 ISVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~-A~eAAe----alkitA~dL~~~G 329 (431)
T PLN03230 263 IATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAA-APKAAE----ALRITAAELVKLG 329 (431)
T ss_pred EEEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccc-hHHHHH----HcCCCHHHHHhCC
Confidence 999999996666655557899999998 6554 3235454544433 222 222333 3389999999999
Q ss_pred chhhhcCC
Q 026137 183 LVEAAYDS 190 (243)
Q Consensus 183 lv~~vv~~ 190 (243)
+||+|++.
T Consensus 330 iID~II~E 337 (431)
T PLN03230 330 VVDEIVPE 337 (431)
T ss_pred CCeEeccC
Confidence 99999975
No 120
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.50 E-value=3.3e-05 Score=66.52 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
-+++++-+....+.++.++.-.-+- +-++-+ +++++ |.+.++. -..+.+.+.+..+....+|+
T Consensus 130 G~~~p~g~rKa~R~m~lA~~f~iPv-VtlvDT-pGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP~ 192 (316)
T TIGR00513 130 GMPAPEGYRKALRLMKMAERFKMPI-ITFIDT-PGAYP-GIGAEER--------------GQSEAIARNLREMARLGVPV 192 (316)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCE-EEEEEC-CCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCCE
Confidence 3588999999999999988765443 333333 33322 3322211 12345666777788999999
Q ss_pred EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCc
Q 026137 104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGL 183 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl 183 (243)
|++|-|.|.|||......||++++.++ +.++ +..|.+.+..+-+.-. ++.+..- -..+++.++++.|+
T Consensus 193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~s-------VisPEg~a~Il~kd~~---~a~~aae-~~~~ta~~l~~~G~ 260 (316)
T TIGR00513 193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYS-------VISPEGCAAILWKDAS---KAPKAAE-AMKITAPDLKELGL 260 (316)
T ss_pred EEEEecccccHHHhhhccCCEEEEecC-ceEE-------ecCHHHHHHHhccchh---hHHHHHH-HccCCHHHHHHCCC
Confidence 999999998777765557999999998 6554 3245555554433221 1222121 25678999999999
Q ss_pred hhhhcCC
Q 026137 184 VEAAYDS 190 (243)
Q Consensus 184 v~~vv~~ 190 (243)
||.|+|.
T Consensus 261 iD~II~e 267 (316)
T TIGR00513 261 IDSIIPE 267 (316)
T ss_pred CeEeccC
Confidence 9999975
No 121
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.46 E-value=3.8e-05 Score=72.09 Aligned_cols=137 Identities=16% Similarity=0.228 Sum_probs=94.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
+++++-+.-..+.++.++...-+- +-++-+. ++++ |...+.. -..+.+.+.+..+....+|+|
T Consensus 222 ~~~peGyRKAlRlmkLAekfgLPI-VtLVDTp-GA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP~I 284 (762)
T PLN03229 222 MPTPHGYRKALRMMYYADHHGFPI-VTFIDTP-GAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVPIV 284 (762)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE-EEEEECC-CcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCCEE
Confidence 578888999999999988765543 3344333 3332 3322221 123456677778889999999
Q ss_pred EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCch
Q 026137 105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLV 184 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv 184 (243)
++|-|.|.|||......||++++.++ ++++ +..|.+++..+-+--. ++.+ ....-.++|++.++.|+|
T Consensus 285 SVViGeggSGGAlA~g~aD~VlMle~-A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii 352 (762)
T PLN03229 285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA 352 (762)
T ss_pred EEEeCCcchHHHHHhhcCCEEEEecC-CeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence 99999999888887778999999988 5553 3245555555544322 2222 334567999999999999
Q ss_pred hhhcCC
Q 026137 185 EAAYDS 190 (243)
Q Consensus 185 ~~vv~~ 190 (243)
|+|+|.
T Consensus 353 D~IIpE 358 (762)
T PLN03229 353 DGIIPE 358 (762)
T ss_pred eeeccC
Confidence 999975
No 122
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=98.36 E-value=2.1e-05 Score=63.54 Aligned_cols=138 Identities=16% Similarity=0.107 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCC-EEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPG-SAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~-~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
++.+..+++...|..++.+...+ ..+.|-+ .|+++.. ...++..+..++.||.
T Consensus 34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INS------pGG~v~~--------------------g~aIyd~m~~~~~~V~ 87 (196)
T PRK12551 34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINS------PGGSVYD--------------------GLGIFDTMQHVKPDVH 87 (196)
T ss_pred ecHHHHHHHHHHHHHhhccCCCCCEEEEEeC------CCcchhh--------------------HHHHHHHHHhcCCCEE
Confidence 88899999999999998543222 1344444 3443332 2345666778888999
Q ss_pred EEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhh--HH-----------HHHHHhCC-HHHHHHH
Q 026137 105 AAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYC--AA-----------LFREKVGS-ATARRDV 166 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g--~~-----------~l~~~~g~-~~~a~~l 166 (243)
..+.|.|.+.|.-+++++|- |++.++ +++......-|.. ..+.- +. .+.++-|. .....++
T Consensus 88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~ 166 (196)
T PRK12551 88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQED 166 (196)
T ss_pred EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 99999999999999999885 888887 6676544432220 11110 00 12233331 1233444
Q ss_pred HhcCcCCCHHHHHHcCchhhhcCC
Q 026137 167 LLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
+-...-++|+||+++||||+|+++
T Consensus 167 ~~rd~~msa~EA~eyGliD~I~~~ 190 (196)
T PRK12551 167 TDRDFFMSPSEAVEYGLIDLVIDK 190 (196)
T ss_pred hhcCcCCCHHHHHHcCCCcEEecc
Confidence 445566999999999999999976
No 123
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.33 E-value=1.8e-05 Score=64.91 Aligned_cols=135 Identities=11% Similarity=0.045 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137 26 LGPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 102 (243)
+|..+.+++...|..++..+ .+ .+.|-+.| +++.. ...++..+...+.|
T Consensus 63 Idd~~a~~i~aqLl~L~~~~~~~~I--~lyINSpG------Gsv~a--------------------GlaIyd~m~~~~~~ 114 (221)
T PRK14514 63 IDDYTANTIQAQLLYLDSVDPGKDI--SIYINSPG------GSVYA--------------------GLGIYDTMQFISSD 114 (221)
T ss_pred EcHHHHHHHHHHHHHHhccCCCCCE--EEEEECCC------cchhh--------------------HHHHHHHHHhcCCC
Confidence 78888888888887777532 33 34554444 33221 23456677888999
Q ss_pred EEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhh-----HH-----------HHHHHhCC-HHHH
Q 026137 103 TVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYC-----AA-----------LFREKVGS-ATAR 163 (243)
Q Consensus 103 ~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g-----~~-----------~l~~~~g~-~~~a 163 (243)
|...+-|.|.+.|.-|++++|. |++.++ +++.+....-|. ..... +. .+.++.|. ....
T Consensus 115 V~tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I 192 (221)
T PRK14514 115 VATICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKV 192 (221)
T ss_pred EEEEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence 9999999999999999999996 889888 777654443232 11111 00 01223341 2233
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
.+.+-...-++|+||+++||||+|++.
T Consensus 193 ~~~~~rd~wmtA~EA~eyGliD~Vi~~ 219 (221)
T PRK14514 193 WADSDRDYWMTAQEAKEYGMIDEVLIK 219 (221)
T ss_pred HHHhhcCccCCHHHHHHcCCccEEeec
Confidence 444555666999999999999999864
No 124
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=98.21 E-value=4.2e-07 Score=70.83 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=63.2
Q ss_pred HhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccc------------cCCC--------CChh-------
Q 026137 96 MMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVD------------IGLT--------LPDY------- 148 (243)
Q Consensus 96 l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~------------~G~~--------~p~~------- 148 (243)
.....|||||.++|.+..+++-++++||-+++.+. +.++...+. +|+- +...
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~ 80 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPM 80 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS-
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCC
Confidence 35689999999999999999999999999999876 555543332 2221 0001
Q ss_pred ---hHHHHH-----------------HHhCCHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHH
Q 026137 149 ---CAALFR-----------------EKVGSATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRL 201 (243)
Q Consensus 149 ---g~~~l~-----------------~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~ 201 (243)
.-..+. |.+. ... .+-+..|..+++++|++.||||++-.. +++...+.+.
T Consensus 81 s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~-~~~-v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~ 150 (154)
T PF01343_consen 81 SEEERENLQELLDELYDQFVNDVAEGRGLS-PDD-VEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL 150 (154)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHH-HHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccCCC-HHH-HHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence 001111 1222 222 233678899999999999999999865 6665554443
No 125
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=7.2e-05 Score=66.48 Aligned_cols=156 Identities=21% Similarity=0.316 Sum_probs=111.1
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEe-cCCCccccCCChhhHHHcCCCcchHHHHHHH
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITT-SHGKFFSNGFDLAWAQAAGSRTGARERVHYM 85 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~-g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~ 85 (243)
++.|.++.++.. +++.+.+.+.+.++.++++..- ++|+. -+++ + +
T Consensus 25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~--~vvl~ldTPG-----G--------------------l 70 (436)
T COG1030 25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAA--AVVLELDTPG-----G--------------------L 70 (436)
T ss_pred CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCc--EEEEEecCCC-----c--------------------h
Confidence 456888888865 9999999999999999987632 34442 2211 1 2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEC---CccchhHHHHHHhcCEEEEecCccceecccc-ccCCC-CChhh-HH-H------
Q 026137 86 FKSFRPLVAAMMDLPMPTVAAVN---GHAAAAGFILALSHDYVVMRRDKGVLYMSEV-DIGLT-LPDYC-AA-L------ 152 (243)
Q Consensus 86 ~~~~~~l~~~l~~~~kp~Ia~v~---G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~-~~G~~-~p~~g-~~-~------ 152 (243)
.+.+.++.+.+.+.|.|++..+. +.|..+|..++++||+..+.+. +.++-... ..|-+ .+... .. .
T Consensus 71 ~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~ 149 (436)
T COG1030 71 LDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRS 149 (436)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHH
Confidence 45678899999999999888874 4699999999999999999987 66764322 23311 11111 11 1
Q ss_pred HHHHhC-CHHHHHHHHhcCcCCCHHHHHHcCchhhhcCChhHHHHH
Q 026137 153 FREKVG-SATARRDVLLRAKKIKGEEALRMGLVEAAYDSEERVAEA 197 (243)
Q Consensus 153 l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~ 197 (243)
+.+.-| +...|.+++.....++++||++.|++|-+..+..+++..
T Consensus 150 ~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~ 195 (436)
T COG1030 150 LAEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKK 195 (436)
T ss_pred HHHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHH
Confidence 223333 345678888889999999999999999999885555443
No 126
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=98.20 E-value=6.1e-05 Score=61.03 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137 26 LGPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 102 (243)
++.++.+++...|..++..+ .+ .+.|.+.| +|+.. ...++..+...+-|
T Consensus 36 i~~~~a~~ii~~Ll~L~~~~~~~~I--~l~INSpG------G~v~~--------------------GlaIyd~m~~~~~~ 87 (201)
T PRK14513 36 IESQMANTIVAQLLLLDSQNPEQEI--QMYINCPG------GEVYA--------------------GLAIYDTMRYIKAP 87 (201)
T ss_pred EcHHHHHHHHHHHHHhhccCCCCCE--EEEEECCC------Cchhh--------------------HHHHHHHHHhcCCC
Confidence 78889999988888888643 33 35554443 43332 24466677888899
Q ss_pred EEEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCC--CChhhH-------------HHHHHHhCC-HHHHH
Q 026137 103 TVAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLT--LPDYCA-------------ALFREKVGS-ATARR 164 (243)
Q Consensus 103 ~Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~--~p~~g~-------------~~l~~~~g~-~~~a~ 164 (243)
|...+.|.|.+.|.-+++++|- |++.++ +++-+....-|.. .++.-. ..+.++-|. ...-.
T Consensus 88 V~Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~ 166 (201)
T PRK14513 88 VSTICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLL 166 (201)
T ss_pred EEEEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 9999999999999999999995 899888 7776554443331 111100 011223331 22334
Q ss_pred HHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 165 DVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 165 ~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
+++-...-++|+||+++||||+|+++
T Consensus 167 ~~~~rd~~msa~EA~eyGliD~I~~~ 192 (201)
T PRK14513 167 RDMERDYFMSPEEAKAYGLIDSVIEP 192 (201)
T ss_pred HHhccCcccCHHHHHHcCCCcEEecc
Confidence 44445566999999999999999976
No 127
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=98.18 E-value=0.00044 Score=58.58 Aligned_cols=139 Identities=17% Similarity=0.226 Sum_probs=83.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc----CCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026137 23 EHRLGPSAIDSILSAIAQAKAE----ATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD 98 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~----~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 98 (243)
.-++....-..+..+++.+.+| ..+- +|.+.-+|+ .-+.+- ......+.+.+.. +..+..
T Consensus 72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqEg---------~~~L~~~a~i~~~-~~~ls~ 135 (274)
T TIGR03133 72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQEA---------NAGLIAIAEIMRA-ILDARA 135 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhhh---------HHHHHHHHHHHHH-HHHHhC
Confidence 3467777888889999888761 1122 455543333 333221 1111111122222 223344
Q ss_pred CCCcEEEEECCc--cchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHH--HHHHHHhcCcCCC
Q 026137 99 LPMPTVAAVNGH--AAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSAT--ARRDVLLRAKKIK 174 (243)
Q Consensus 99 ~~kp~Ia~v~G~--~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~--~a~~l~l~g~~~~ 174 (243)
. .|+|+++-|+ |.||+..++.+||++|++++ ++++ +. |...+-...| .. ...+--+..+.+.
T Consensus 136 ~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~a----GP~VIe~~~G-~e~~~~~d~~l~~~~lG 201 (274)
T TIGR03133 136 A-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LS----GPEVIEQEAG-VEEFDSRDRALVWRTTG 201 (274)
T ss_pred C-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------cc----CHHHHHHhcC-CCccCHHHhcccccccc
Confidence 4 9999999999 89999999999999999987 6554 32 2222333344 11 1223334455677
Q ss_pred HHHHHHcCchhhhcCCh
Q 026137 175 GEEALRMGLVEAAYDSE 191 (243)
Q Consensus 175 a~eA~~~Glv~~vv~~~ 191 (243)
+......|++|.+++++
T Consensus 202 G~~~~~sG~~D~~v~dd 218 (274)
T TIGR03133 202 GKHRFLSGDADVLVEDD 218 (274)
T ss_pred hHhHhhcccceEEeCCH
Confidence 77788899999999884
No 128
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=98.09 E-value=0.00067 Score=58.16 Aligned_cols=163 Identities=14% Similarity=0.168 Sum_probs=99.5
Q ss_pred CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHH
Q 026137 8 GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFK 87 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~ 87 (243)
+.-..|.-|.|. ...-+++....+.+.++++.+....-+ +|.+...|+ +.+.+ . ....... .
T Consensus 120 G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~lP--lV~l~dsgG-----armqE---g------i~sL~~~-a 181 (292)
T PRK05654 120 GMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKCP--LVIFSASGG-----ARMQE---G------LLSLMQM-A 181 (292)
T ss_pred CEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCC-----cchhh---h------hhHHHhH-H
Confidence 333334445552 124579999999999999998877544 455554443 22221 0 0011111 1
Q ss_pred HHHHHHHHHhcCCCcEEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHH
Q 026137 88 SFRPLVAAMMDLPMPTVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDV 166 (243)
Q Consensus 88 ~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l 166 (243)
.....+.++.....|.|+++-|+|.||+. .+++.+|++++.++ +.+++ .-| ..+...++ ..
T Consensus 182 k~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~-------aGp----rvie~~~~-e~----- 243 (292)
T PRK05654 182 KTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGF-------AGP----RVIEQTVR-EK----- 243 (292)
T ss_pred HHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEe-------cCH----HHHHhhhh-hh-----
Confidence 22223344566789999999999999965 56778999999775 65543 112 22222233 11
Q ss_pred HhcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 167 LLRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 167 ~l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
+ .-+.-+++-+.+.|+||.|+++ .++.+...++.+.+...
T Consensus 244 l-pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~ 283 (292)
T PRK05654 244 L-PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQ 283 (292)
T ss_pred h-hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcC
Confidence 1 1122356777899999999998 77888887777766544
No 129
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=98.09 E-value=5.2e-05 Score=63.45 Aligned_cols=164 Identities=19% Similarity=0.187 Sum_probs=100.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
+.++.+..+++.++++...++..+ .+++. +.|+++.. ..++...+..++.++
T Consensus 70 ~~I~i~dse~v~raI~~~~~~~~I--dLii~------TpGG~v~A--------------------A~~I~~~l~~~~~~v 121 (285)
T PF01972_consen 70 RYIDIDDSEFVLRAIREAPKDKPI--DLIIH------TPGGLVDA--------------------AEQIARALREHPAKV 121 (285)
T ss_pred eeEcHhhHHHHHHHHHhcCCCCce--EEEEE------CCCCcHHH--------------------HHHHHHHHHhCCCCE
Confidence 457888888999998888776554 34443 33443332 244666778899999
Q ss_pred EEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHH--HHHHhcCcCCCHHHHHHc
Q 026137 104 VAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATAR--RDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a--~~l~l~g~~~~a~eA~~~ 181 (243)
++.|+..|..+|.-+|++||-+++.+. +.+|-...++|- .|..+.......-+ .... .-+++..-.-.|-+..+
T Consensus 122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~sil~~~~~K~-~~~i~D~tlIladia~KAi~q~~- 197 (285)
T PF01972_consen 122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAASILKAVEQKP-PDEIDDQTLILADIAEKAIRQVR- 197 (285)
T ss_pred EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999987 889999999987 67665333222222 1100 11111100000111111
Q ss_pred CchhhhcCChhHHHHHHHHHHHHHhcCCC---CcchHHHHHH
Q 026137 182 GLVEAAYDSEERVAEASMRLGKQLAGRKC---TGEVYAEIRK 220 (243)
Q Consensus 182 Glv~~vv~~~~~l~~~a~~~a~~~~~~~~---~~~~~~~~K~ 220 (243)
.++.+...+ .--.+++.++++.++...| ++......|+
T Consensus 198 ~~v~~lL~~-~~~~eka~~ia~~L~~g~~tHdypi~~eea~~ 238 (285)
T PF01972_consen 198 EFVKELLKD-KMDEEKAEEIAEKLSSGKWTHDYPITVEEAKE 238 (285)
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhcCCCCCCCCCCCHHHHHH
Confidence 133333322 1114678889999888754 3445555555
No 130
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.08 E-value=0.00049 Score=58.75 Aligned_cols=148 Identities=14% Similarity=0.161 Sum_probs=93.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 102 (243)
.-+++....+.+.++++.+....-+ +|.+...|++ -+.+- ......+ ......+.++.....|
T Consensus 133 gGSmg~~~geKi~r~~e~A~~~~lP--lV~l~dSgGa-----RmqEg---------~~sL~~~-ak~~~~~~~~~~~~vP 195 (285)
T TIGR00515 133 GGSMGSVVGEKFVRAIEKALEDNCP--LIIFSASGGA-----RMQEA---------LLSLMQM-AKTSAALAKMSERGLP 195 (285)
T ss_pred CCCccHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCc-----ccccc---------hhHHHhH-HHHHHHHHHHHcCCCC
Confidence 4579999999999999998876444 5666554443 22110 1111111 1122233456667899
Q ss_pred EEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026137 103 TVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 103 ~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~ 181 (243)
.|+++-|+|.||+. .+++.+|++++.++ +.+++. .| ..+...+| ... .-+.-+++-+.+.
T Consensus 196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gp----rVie~ti~-e~l------pe~~q~ae~~~~~ 256 (285)
T TIGR00515 196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGFA-------GP----RVIEQTVR-EKL------PEGFQTSEFLLEH 256 (285)
T ss_pred EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEcC-------CH----HHHHHHhc-Ccc------chhcCCHHHHHhC
Confidence 99999999999965 56789999999887 655431 12 22333333 111 1122366668899
Q ss_pred CchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 182 GLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 182 Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
|+||.|+++ .++.+...++.+.+..
T Consensus 257 G~vD~iv~~-~~~r~~l~~~L~~~~~ 281 (285)
T TIGR00515 257 GAIDMIVHR-PEMKKTLASLLAKLQN 281 (285)
T ss_pred CCCcEEECc-HHHHHHHHHHHHHHhh
Confidence 999999999 7787777777665443
No 131
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=98.05 E-value=0.0012 Score=56.57 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=93.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcC----CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhc
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEA----TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMD 98 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~----~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 98 (243)
.-++.......+..+++.+.++. -+- +|++.-+|+. -+.+- ......+.+.+. .+..+..
T Consensus 81 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGGa-----RlqEg---------~~~L~~~a~i~~-~~~~ls~ 144 (301)
T PRK07189 81 GGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGGV-----RLQEA---------NAGLAAIAEIMR-AIVDLRA 144 (301)
T ss_pred CcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCCc-----Cccch---------HHHHHHHHHHHH-HHHHHhC
Confidence 45788888899999999888765 133 4555443332 22211 111111112222 2223344
Q ss_pred CCCcEEEEECCc--cchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCC-HHHHHHHHhcCcCCCH
Q 026137 99 LPMPTVAAVNGH--AAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGS-ATARRDVLLRAKKIKG 175 (243)
Q Consensus 99 ~~kp~Ia~v~G~--~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~a 175 (243)
. .|+|+++-|+ |+||+...+.+||++|++++ ++++ +.-| ..+-...|. .-...+.-+-.+.+.+
T Consensus 145 ~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP----~VIe~~~G~e~~d~~d~~~vw~~lGG 211 (301)
T PRK07189 145 A-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGP----EVIEQEAGVEEFDSRDRALVWRTTGG 211 (301)
T ss_pred C-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCH----HHHHHhcCCcccCHHHhcccccccCc
Confidence 4 9999999999 99999999999999999987 6554 3212 222222330 0011121222222333
Q ss_pred HHHHHcCchhhhcCChh-HHHHHHHHHHHHHhcCCCCcchHHHHHHhhchhHHHHHh
Q 026137 176 EEALRMGLVEAAYDSEE-RVAEASMRLGKQLAGRKCTGEVYAEIRKSLYPDLCGVLG 231 (243)
Q Consensus 176 ~eA~~~Glv~~vv~~~~-~l~~~a~~~a~~~~~~~~~~~~~~~~K~~l~~~~~~~l~ 231 (243)
......|.+|.+++++. .+.+.+..+.+ ... .+...+..+..+.....+..+
T Consensus 212 ~h~~~sG~~D~~v~dd~~a~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~rl~~~~ 264 (301)
T PRK07189 212 KHRYLSGLADALVDDDVAAFRAAALALLA---RGP-FPAAHRSAEQARLLARLARFD 264 (301)
T ss_pred ceeeecccceEEeCCHHHHHHHHHHHHHh---ccC-CChHHHHHHHHHHHHHHHHhc
Confidence 44556899999998843 23333333322 221 133334445555554445444
No 132
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=98.01 E-value=0.00092 Score=61.81 Aligned_cols=170 Identities=15% Similarity=0.118 Sum_probs=105.3
Q ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 11 FVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
.-|.-|+|. ...-++++...+...+.++.+.+..-+ +|.+.-.++ |..|.+-+ .........
T Consensus 317 V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~lP--lV~lvDs~G-~~~g~~~E--------------~~g~~~~~a 378 (512)
T TIGR01117 317 VGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNIP--IVTFVDVPG-FLPGVNQE--------------YGGIIRHGA 378 (512)
T ss_pred EEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCcC-ccccHHHH--------------HHHHHHHHH
Confidence 334445552 123369999999999999988875444 444443333 55554322 122344566
Q ss_pred HHHHHHhcCCCcEEEEECCccchhHHHHHHh----cCEEEEecCccceeccccccCCCCChhhHHHHHH-HhC---CHHH
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALS----HDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFRE-KVG---SATA 162 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~----~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~-~~g---~~~~ 162 (243)
+++.++.....|.|+.|-|.+.|+|+.-++. +|++++.++ +.+ |+..|...+..+.+ .+. ....
T Consensus 379 ~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~-------~v~~pe~a~~i~~~~~l~~~~~~~~ 450 (512)
T TIGR01117 379 KVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEI-------AVMGPAGAANIIFRKDIKEAKDPAA 450 (512)
T ss_pred HHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeE-------eecCHHHHHHHHhhhhcccccCHHH
Confidence 7788888899999999999999886644432 899999887 655 44234443433322 211 0111
Q ss_pred HHHHH---hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 163 RRDVL---LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 163 a~~l~---l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
++... ..-+..++..+.+.|+||.|+++ .++.....+..+.+..
T Consensus 451 ~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~ 497 (512)
T TIGR01117 451 TRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLES 497 (512)
T ss_pred HHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhc
Confidence 11111 12234578899999999999998 6677766666655443
No 133
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=97.99 E-value=0.00015 Score=68.08 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=73.3
Q ss_pred eCCEEEEEEcC-C--CCCCCCCCC----------HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcC
Q 026137 7 HGDVFVLTLTG-S--SNVDEHRLG----------PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAG 73 (243)
Q Consensus 7 ~~~v~~i~ln~-p--~~~~~N~l~----------~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~ 73 (243)
++.+++|.++. + +..+.+.+. ...+.++.++|+++..|+.|+ .||+.-.+ +.|.++..+
T Consensus 41 ~~~~L~l~~~gg~i~e~~~~~~~~~~~~~~~~~~~~~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~---- 112 (584)
T TIGR00705 41 SSGALLLDLPVGDVTDQSPRVSLQGTLLGNPKGRAISLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHL---- 112 (584)
T ss_pred CCeEEEEECCCCcccCcCCCCchhhhhccCCCcCCcCHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHH----
Confidence 57888888884 2 211222221 235789999999999999999 78887531 223333221
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCccceec
Q 026137 74 SRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYM 136 (243)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~ 136 (243)
+.+.+.+..+....|||||..++++ -+|+-++.+||.+++.+. +.+++
T Consensus 113 -------------~ei~~ai~~fk~sgKpVvA~~~~~~-s~~YylAs~AD~I~~~p~-G~v~~ 160 (584)
T TIGR00705 113 -------------VEIGSALSEFKDSGKPVYAYGTNYS-QGQYYLASFADEIILNPM-GSVDL 160 (584)
T ss_pred -------------HHHHHHHHHHHhcCCeEEEEEcccc-chhhhhhhhCCEEEECCC-ceEEe
Confidence 2344455566678999999988876 578999999999999886 55543
No 134
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.95 E-value=0.0016 Score=54.26 Aligned_cols=153 Identities=13% Similarity=0.130 Sum_probs=88.0
Q ss_pred CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHH-HhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHH
Q 026137 8 GDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQA-KAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMF 86 (243)
Q Consensus 8 ~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~-~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~ 86 (243)
+.-..+.=|.|. . .++..-...+.+.+... +.+..+= +|.+-=.+ .|-.|..-++ .-..
T Consensus 31 G~~V~vIa~~~~---~-~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtp-G~~~g~~aE~--------------~G~~ 90 (238)
T TIGR03134 31 GGKVTVIGVVPD---A-EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTP-SQAYGRREEL--------------LGIN 90 (238)
T ss_pred CEEEEEEEECCC---C-cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCC-CCCCCHHHHH--------------HHHH
Confidence 333334445552 2 68877777788888775 4445544 44443222 2333332222 1223
Q ss_pred HHHHHHHHHHh---cCCCcEEEEECCccchhHHH-HHHhcCEEEEecCccceeccccccCCCCChhh-HHHHHHHhCCHH
Q 026137 87 KSFRPLVAAMM---DLPMPTVAAVNGHAAAAGFI-LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFREKVGSAT 161 (243)
Q Consensus 87 ~~~~~l~~~l~---~~~kp~Ia~v~G~~~G~G~~-lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~~~g~~~ 161 (243)
+.+.+++..+. ..+.|+|+.|-|.++|||+. +.+.+|.++|.++ +.+ +. ++.-+ +..+.+-..
T Consensus 91 ~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i-------~v-m~~e~aa~I~~~~~~--- 158 (238)
T TIGR03134 91 QALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMV-------HV-MDLESMARVTKRSVE--- 158 (238)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEE-------Ee-cCHHHHHHHHccCHh---
Confidence 33444444444 56699999999999998874 4444888888876 555 44 34344 333333322
Q ss_pred HHHHHHhcC--cCCCHHHHHHcCchhhhcCChh
Q 026137 162 ARRDVLLRA--KKIKGEEALRMGLVEAAYDSEE 192 (243)
Q Consensus 162 ~a~~l~l~g--~~~~a~eA~~~Glv~~vv~~~~ 192 (243)
...++.-.- ...+.+.+.+.|+||.|+++.+
T Consensus 159 ~~~e~a~~~~~~a~~~~~~~~~G~vd~vi~~~~ 191 (238)
T TIGR03134 159 ELEALAKSSPVFAPGIENFVKLGGVHALLDVAD 191 (238)
T ss_pred HHHHHHHhhhhhccCHHHHHhCCCccEEeCCCC
Confidence 223332221 2467788999999999998743
No 135
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00039 Score=55.91 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=86.5
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137 13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.|..| ++..+...+...+..++.++..+- .+.|-+.|+...+|. .
T Consensus 30 I~l~g~-------I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~--------------------------A 76 (200)
T COG0740 30 IFLGGE-------IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL--------------------------A 76 (200)
T ss_pred EEEeee-------echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhH--------------------------H
Confidence 566665 555566666666666665432221 355555554443333 3
Q ss_pred HHHHHhcCCCcEEEEECCccchhHHHHHHhcCEE--EEecCccceeccccccCCCCChhhHHH-----------------
Q 026137 92 LVAAMMDLPMPTVAAVNGHAAAAGFILALSHDYV--VMRRDKGVLYMSEVDIGLTLPDYCAAL----------------- 152 (243)
Q Consensus 92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~--ia~~~~a~f~~p~~~~G~~~p~~g~~~----------------- 152 (243)
++..+...+.||...+-|.+...|..|++++|.. ++.++ +++-..... |. .-|-....
T Consensus 77 Iydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~i 153 (200)
T COG0740 77 IYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNRI 153 (200)
T ss_pred HHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999999985 88887 666443333 33 11111111
Q ss_pred HHHHhCCHHHH--HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 153 FREKVGSATAR--RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 153 l~~~~g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
+...-| .... ....-...-++|+||+++||||+|...
T Consensus 154 ~a~~TG-q~~e~i~~d~drd~~msa~eA~~yGLiD~V~~~ 192 (200)
T COG0740 154 YAEHTG-QTLEKIEKDTDRDTWMSAEEAKEYGLIDKVIES 192 (200)
T ss_pred HHHHcC-CCHHHHHHhhcccccCCHHHHHHcCCcceeccc
Confidence 111222 1111 112222344999999999999999977
No 136
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=97.82 E-value=0.00081 Score=55.20 Aligned_cols=142 Identities=13% Similarity=0.163 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 27 GPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
+..+.+.+...|-.++.+. .+ -+.|-+.|+...+|-=+... .....++..+...+-+|
T Consensus 50 ~~~~a~~iiaqLl~L~~~~~~k~I--~lyINSpGGsv~~G~~iG~v-----------------~~glaIyD~m~~ik~~V 110 (222)
T PRK12552 50 GMDVTELIIAQLLYLEFDDPEKPI--YFYINSTGTSWYTGDAIGFE-----------------TEAFAICDTMRYIKPPV 110 (222)
T ss_pred hHhHHHHHHHHHHHHhccCCCCCE--EEEEeCCCCCcccccccccc-----------------ccHHHHHHHHHhcCCCe
Confidence 3348888888888886543 34 46777776655555211111 12344666777788899
Q ss_pred EEEECCccchhHHHHHHhcCE--EEEecCccceeccccccCCCCChhhHHH-----------------HHHHhCC-HHHH
Q 026137 104 VAAVNGHAAAAGFILALSHDY--VVMRRDKGVLYMSEVDIGLTLPDYCAAL-----------------FREKVGS-ATAR 163 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~--~ia~~~~a~f~~p~~~~G~~~p~~g~~~-----------------l~~~~g~-~~~a 163 (243)
...+-|.|.+.+.-|++++|- |++.++ +++-+....-|. -|-.... +..+-|. ...-
T Consensus 111 ~Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~--~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I 187 (222)
T PRK12552 111 HTICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGA--RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKL 187 (222)
T ss_pred EEEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCccc--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999995 888888 777655444333 1111111 1112220 1122
Q ss_pred HHHHhcCcCCCHHHHHHcCchhhhcCC
Q 026137 164 RDVLLRAKKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 164 ~~l~l~g~~~~a~eA~~~Glv~~vv~~ 190 (243)
.+.+-.-.-++|+||+++||||+|+.+
T Consensus 188 ~~d~~rd~wmsA~EA~eyGliD~Ii~~ 214 (222)
T PRK12552 188 SKDTDRMFYLTPQEAKEYGLIDRVLES 214 (222)
T ss_pred HHHhcCCCcCCHHHHHHcCCCcEEecc
Confidence 233333345999999999999999975
No 137
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=97.72 E-value=0.0044 Score=52.94 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=87.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHH-HhcCCC
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAA-MMDLPM 101 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~k 101 (243)
.-++....-+.+.++++.+.+..-+ +|++..+|+ +-+.+-. .....+.+. ...+.+ ...-..
T Consensus 146 gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGG-----ARmQEg~---------~sL~qmak~-saa~~~~~~~~~v 208 (296)
T CHL00174 146 GGSMGSVVGEKITRLIEYATNESLP--LIIVCASGG-----ARMQEGS---------LSLMQMAKI-SSALYDYQSNKKL 208 (296)
T ss_pred ccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCC-----ccccccc---------hhhhhhHHH-HHHHHHHHHcCCC
Confidence 4578888999999999998876544 555654433 3332110 001111111 111222 224679
Q ss_pred cEEEEECCccchhHHH-HHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHH
Q 026137 102 PTVAAVNGHAAAAGFI-LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALR 180 (243)
Q Consensus 102 p~Ia~v~G~~~G~G~~-lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~ 180 (243)
|.|+++.|+|.||+.. +++.||++|+.++ +.+ |+ .|.......+| .. +.-+.=+++-.++
T Consensus 209 P~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~I-------gf----AGPrVIe~t~g-e~------lpe~fq~ae~l~~ 269 (296)
T CHL00174 209 FYISILTSPTTGGVTASFGMLGDIIIAEPN-AYI-------AF----AGKRVIEQTLN-KT------VPEGSQAAEYLFD 269 (296)
T ss_pred CEEEEEcCCCchHHHHHHHHcccEEEEeCC-eEE-------Ee----eCHHHHHHhcC-Cc------CCcccccHHHHHh
Confidence 9999999999999865 4777999998544 644 33 22222333333 11 1122236777889
Q ss_pred cCchhhhcCChhHHHHHHHHHHHH
Q 026137 181 MGLVEAAYDSEERVAEASMRLGKQ 204 (243)
Q Consensus 181 ~Glv~~vv~~~~~l~~~a~~~a~~ 204 (243)
.|+||.+|+. .++.+...++.+-
T Consensus 270 ~G~vD~iV~r-~~lr~~l~~ll~~ 292 (296)
T CHL00174 270 KGLFDLIVPR-NLLKGVLSELFQL 292 (296)
T ss_pred CcCceEEEcH-HHHHHHHHHHHHh
Confidence 9999999998 6777766655443
No 138
>PRK10949 protease 4; Provisional
Probab=97.70 E-value=0.00049 Score=64.88 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Q 026137 30 AIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNG 109 (243)
Q Consensus 30 ~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G 109 (243)
.+.++.++|+++.+|+.|+ .||+.-.+ +. |..... .+.+.+.+..+....||+||..+.
T Consensus 96 ~l~div~~i~~Aa~D~rIk-givL~i~s--~g-G~~~a~-----------------~~eI~~ai~~fk~sGKpVvA~~~~ 154 (618)
T PRK10949 96 SLFDIVNTIRQAKDDRNIT-GIVLDLKN--FA-GADQPS-----------------MQYIGKALREFRDSGKPVYAVGDS 154 (618)
T ss_pred cHHHHHHHHHHHhcCCCce-EEEEEeCC--CC-CccHHH-----------------HHHHHHHHHHHHHhCCeEEEEecC
Confidence 3568999999999999999 78887532 11 221111 123445555666778999996444
Q ss_pred ccchhHHHHHHhcCEEEEecCccceec
Q 026137 110 HAAAAGFILALSHDYVVMRRDKGVLYM 136 (243)
Q Consensus 110 ~~~G~G~~lal~~D~~ia~~~~a~f~~ 136 (243)
+ .-+++-||.+||.+++.+. +.+++
T Consensus 155 ~-~s~~YyLASaAD~I~l~P~-G~v~~ 179 (618)
T PRK10949 155 Y-SQGQYYLASFANKIYLSPQ-GVVDL 179 (618)
T ss_pred c-cchhhhhhhhCCEEEECCC-ceEEE
Confidence 4 4578999999999999886 54543
No 139
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.61 E-value=0.0015 Score=60.27 Aligned_cols=143 Identities=24% Similarity=0.327 Sum_probs=90.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCC--ChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCC
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF--DLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLP 100 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~--D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 100 (243)
..++.......+..+++.+.++.-+- +.++. |.|. .+.+-. .....+...+.. ..++.. .
T Consensus 70 gGs~g~~~~~Ki~ra~~~A~~~~~P~-v~l~d------sgGa~~r~~eg~---------~~l~~~g~i~~~-~~~~~~-~ 131 (493)
T PF01039_consen 70 GGSVGEVHGEKIARAIELALENGLPL-VYLVD------SGGAFLRMQEGV---------ESLMGMGRIFRA-IARLSG-G 131 (493)
T ss_dssp GGTBSHHHHHHHHHHHHHHHHHTEEE-EEEEE------ESSBCGGGGGHH---------HHHHHHHHHHHH-HHHHHT-T
T ss_pred cCCCCcccceeeehHHHHHHHcCCCc-EEecc------ccccccccchhh---------hhhhhhHHHHHH-HHHHhc-C
Confidence 45789999999999999999876543 33433 3344 333322 111222222232 334555 9
Q ss_pred CcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH---
Q 026137 101 MPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE--- 177 (243)
Q Consensus 101 kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e--- 177 (243)
.|+|+++.|+|.|+|..++..||++|++++.+.+ +++-| ..+. ..+|+.++.++
T Consensus 132 iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~GP----~vv~------------~~~Ge~~~~~~lgG 188 (493)
T PF01039_consen 132 IPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAGP----RVVE------------SATGEEVDSEELGG 188 (493)
T ss_dssp S-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESSTH----HHHH------------HHHSSCTSHHHHHB
T ss_pred CCeEEEEccccccchhhcccccCccccCccceEE-------Eeccc----cccc------------cccCccccchhhhh
Confidence 9999999999999999999999999999874544 44212 1121 22356666654
Q ss_pred ----HHHcCchhhhcCChhHHHHHHHHHHHHHh
Q 026137 178 ----ALRMGLVEAAYDSEERVAEASMRLGKQLA 206 (243)
Q Consensus 178 ----A~~~Glv~~vv~~~~~l~~~a~~~a~~~~ 206 (243)
+...|.+|.+++++++..+.++++..-+-
T Consensus 189 ~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp 221 (493)
T PF01039_consen 189 ADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP 221 (493)
T ss_dssp HHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred hhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence 34789999999985555555555554443
No 140
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.54 E-value=0.011 Score=55.44 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHH---HHhc
Q 026137 22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVA---AMMD 98 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~l~~ 98 (243)
..-+++....+.+.++++.+.+..-+ +|.+.-.|+.+-.+ ..+.+.. ...+-+++. ++..
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~~--------------~~~~g~if~~~~~ls~ 203 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFPD--------------RDHFGRIFYNQARMSS 203 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccch--------------HhHHHHHHHHHHHHhC
Confidence 34589999999999999998877554 44444333333221 1111100 001122222 3455
Q ss_pred CCCcEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH
Q 026137 99 LPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA 178 (243)
Q Consensus 99 ~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA 178 (243)
...|.|+++-|+|.|||......||++|++++.+.+. + .|...+... +|+.+++++.
T Consensus 204 ~~VP~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~----aGP~vV~~~------------~Ge~v~~eeL 260 (569)
T PLN02820 204 AGIPQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------L----AGPPLVKAA------------TGEEVSAEDL 260 (569)
T ss_pred CCCCEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------e----cCHHHHHhh------------cCcccCHHHh
Confidence 6799999999999999999999999999998755443 2 111122222 3334444443
Q ss_pred -----H--HcCchhhhcCChhHHHHHHHHHHHHH
Q 026137 179 -----L--RMGLVEAAYDSEERVAEASMRLGKQL 205 (243)
Q Consensus 179 -----~--~~Glv~~vv~~~~~l~~~a~~~a~~~ 205 (243)
. .-|.+|.+++++.+..+.++++..-+
T Consensus 261 GGa~~h~~~sGv~d~~~~de~~a~~~~R~lls~L 294 (569)
T PLN02820 261 GGADVHCKVSGVSDHFAQDELHALAIGRNIVKNL 294 (569)
T ss_pred CCHHHhcccccccccccCchHHHHHHHHHHHHhc
Confidence 2 47899999988545555555554444
No 141
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.47 E-value=0.0057 Score=56.67 Aligned_cols=149 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 102 (243)
.-+++......+.++++.+.++.-+ +|.+.-+|+. .+.+-.. ....+.+.+... ....-..|
T Consensus 95 gGS~g~~~~~K~~r~~e~A~~~~lP--lV~l~dSgGa-----rm~eg~~---------~l~~~~~~~~~~--~~~s~~iP 156 (512)
T TIGR01117 95 GGSLGEMHAAKIVKIMDLAMKMGAP--VVGLNDSGGA-----RIQEAVD---------ALKGYGDIFYRN--TIASGVVP 156 (512)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCC--EEEEecCCCC-----Cccccch---------hhhhHHHHHHHH--HHHcCCCc
Confidence 4578888999999999999887655 3444433322 2211000 000111111111 11233589
Q ss_pred EEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHH--HH
Q 026137 103 TVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEA--LR 180 (243)
Q Consensus 103 ~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA--~~ 180 (243)
.|+++-|+|.||+......||++|++++.++++ + .|...+....| .. .+.+.+.+.+. ..
T Consensus 157 ~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~----aGP~vv~~~~G-e~------v~~e~lGGa~~h~~~ 218 (512)
T TIGR01117 157 QISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------I----TGPQVIKTVTG-EE------VTAEQLGGAMAHNSV 218 (512)
T ss_pred EEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------e----cChHHHHhhcC-cc------cchhhcchHHHhccc
Confidence 999999999999988878999999998744443 2 11122222233 11 12333433333 35
Q ss_pred cCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 181 MGLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 181 ~Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
-|.+|.+++++++..+.++++..-+-.
T Consensus 219 sGv~d~~~~de~ea~~~~r~~ls~lp~ 245 (512)
T TIGR01117 219 SGVAHFIAEDDDDCIMLIRRLLSFLPS 245 (512)
T ss_pred cceeEEecCChHHHHHHHHHHHHhCCc
Confidence 799999999877777777777665543
No 142
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=96.94 E-value=0.038 Score=46.38 Aligned_cols=150 Identities=12% Similarity=0.152 Sum_probs=98.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCc
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMP 102 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp 102 (243)
.-++..-.=+.+..+++.+-.+. +- +|+++.+|+ +-+.+-. ...-..-.....+.++.....|
T Consensus 135 gGSmGsVvGeki~ra~E~A~e~k-~P-~v~f~aSGG-----ARMQEg~----------lSLMQMaktsaAl~~l~ea~lp 197 (294)
T COG0777 135 GGSMGSVVGEKITRAIERAIEDK-LP-LVLFSASGG-----ARMQEGI----------LSLMQMAKTSAALKRLSEAGLP 197 (294)
T ss_pred ccchhHHHHHHHHHHHHHHHHhC-CC-EEEEecCcc-----hhHhHHH----------HHHHHHHHHHHHHHHHHhcCCc
Confidence 45677777788888998888765 44 788876653 3332210 0001112334556677888999
Q ss_pred EEEEECCccchh-HHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHc
Q 026137 103 TVAAVNGHAAAA-GFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRM 181 (243)
Q Consensus 103 ~Ia~v~G~~~G~-G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~ 181 (243)
.|+.+..+..|| ...+++.-|+.||-+. +.+| +.-|-..-+.....++ .| -=+++-.++.
T Consensus 198 yIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlIG-------FAGpRVIEQTire~LP----------eg-fQ~aEfLleh 258 (294)
T COG0777 198 YISVLTDPTTGGVSASFAMLGDIIIAEPG-ALIG-------FAGPRVIEQTIREKLP----------EG-FQTAEFLLEH 258 (294)
T ss_pred eEEEecCCCccchhHhHHhccCeeecCcc-cccc-------cCcchhhhhhhcccCC----------cc-hhhHHHHHHc
Confidence 999999999988 5699999999999655 6554 4222221222222332 11 2356778899
Q ss_pred CchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137 182 GLVEAAYDSEERVAEASMRLGKQLAGRK 209 (243)
Q Consensus 182 Glv~~vv~~~~~l~~~a~~~a~~~~~~~ 209 (243)
|+||.||+. .++......+.+.+...+
T Consensus 259 G~iD~iv~R-~elr~tla~ll~~~~~~~ 285 (294)
T COG0777 259 GMIDMIVHR-DELRTTLASLLAKLTPQP 285 (294)
T ss_pred CCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence 999999998 788888777777776654
No 143
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=96.91 E-value=0.024 Score=47.98 Aligned_cols=136 Identities=17% Similarity=0.283 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137 27 GPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~ 106 (243)
+++-+..-...++.+++=.-+- +.+|--.|-+ .|..-++..+ .+...+-+..+.++++|+|+.
T Consensus 132 ~PeGyRKAlRlm~~AekF~lPi-itfIDT~GAy--pG~~AEErGQ--------------~eAIA~nL~em~~LkvPiI~i 194 (317)
T COG0825 132 RPEGYRKALRLMKLAEKFGLPI-ITFIDTPGAY--PGIGAEERGQ--------------SEAIARNLREMARLKVPIISI 194 (317)
T ss_pred CchHHHHHHHHHHHHHHhCCCE-EEEecCCCCC--CCcchhhccc--------------HHHHHHHHHHHhCCCCCEEEE
Confidence 3777777777777777644433 3444333333 3343343322 123344455678899999999
Q ss_pred ECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHHHHHcCchhh
Q 026137 107 VNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEEALRMGLVEA 186 (243)
Q Consensus 107 v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~ 186 (243)
|=|---+||.--...+|.+++-++ ++++. + .|-+.++.|-+- ..++.+ .-..-.++|++.+++|+||.
T Consensus 195 VIGEGgSGGALAi~vad~V~mle~-s~ySV------i-sPEG~AsILWkD---~~ka~e-AAe~mkita~dLk~lgiID~ 262 (317)
T COG0825 195 VIGEGGSGGALAIGVADRVLMLEN-STYSV------I-SPEGCASILWKD---ASKAKE-AAEAMKITAHDLKELGIIDG 262 (317)
T ss_pred EecCCCchhhHHhhHHHHHHHHHh-ceeee------c-ChhhhhhhhhcC---hhhhHH-HHHHcCCCHHHHHhCCCcce
Confidence 999987777766667899999998 77763 2 355545544322 233333 23455799999999999999
Q ss_pred hcCCh
Q 026137 187 AYDSE 191 (243)
Q Consensus 187 vv~~~ 191 (243)
|++.+
T Consensus 263 II~Ep 267 (317)
T COG0825 263 IIPEP 267 (317)
T ss_pred eccCC
Confidence 99763
No 144
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=96.83 E-value=0.11 Score=48.73 Aligned_cols=157 Identities=12% Similarity=0.015 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
.++.+-.....+.++.++.- .+= +|.+.-.+ .|..|.+-+. .-..+...+++.++....+|.|
T Consensus 381 ~l~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~p-Gf~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i 443 (569)
T PLN02820 381 ILFTESALKGAHFIELCAQR-GIP-LLFLQNIT-GFMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI 443 (569)
T ss_pred ccCHHHHHHHHHHHHHHHhc-CCC-EEEEEECC-CCCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence 47788888888888877764 443 44444332 2555553332 2346678889999999999999
Q ss_pred EEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhh-HHHHHH-Hh------C-----CHHHH-HHH
Q 026137 105 AAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYC-AALFRE-KV------G-----SATAR-RDV 166 (243)
Q Consensus 105 a~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g-~~~l~~-~~------g-----~~~~a-~~l 166 (243)
++|=|.++|+|..-++ ..|++++.++ + .+|+ ++.-+ +..+.+ .+ | ....+ ++.
T Consensus 444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~v-mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~ 514 (569)
T PLN02820 444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGV-MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAK 514 (569)
T ss_pred EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEe-cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHH
Confidence 9999999998775554 4577777665 5 4455 44444 333332 12 0 01100 111
Q ss_pred H--hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 167 L--LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 167 ~--l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
+ ..-+..++-.|.+.|+||.|+++ .+.........+.....
T Consensus 515 ~~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~ 557 (569)
T PLN02820 515 TVEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNR 557 (569)
T ss_pred HHHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcC
Confidence 1 12234677788999999999998 55655555555444433
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=96.37 E-value=0.057 Score=49.96 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=98.8
Q ss_pred EEEcCCCCCCCC--CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHH
Q 026137 13 LTLTGSSNVDEH--RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFR 90 (243)
Q Consensus 13 i~ln~p~~~~~N--~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (243)
|.=|+| ..+ .++++-.....+.++.++.. .+= +|.+.-. ..|..|.. .......+...
T Consensus 298 iian~~---~~~~G~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dt-pGf~~g~~--------------~E~~g~~~~ga 357 (493)
T PF01039_consen 298 IIANNP---RQRAGALDPDGARKAARFIRLCDAF-NIP-LVTLVDT-PGFMPGPE--------------AERAGIIRAGA 357 (493)
T ss_dssp EEEE-T---TCGGGEB-HHHHHHHHHHHHHHHHT-T---EEEEEEE-CEB--SHH--------------HHHTTHHHHHH
T ss_pred EEEecc---ccccccCChHHHHHHHHHHHHHHhh-CCc-eEEEeec-ccccccch--------------hhhcchHHHHH
Confidence 444666 333 69999999999999888874 333 4555433 23444432 22223466778
Q ss_pred HHHHHHhcCCCcEEEEECCccchhHHHHHHhc----CEEEEecCccceeccccccCCCCChhhHHHHHHH-hC-C-----
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAAAAGFILALSH----DYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREK-VG-S----- 159 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~----D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~-~g-~----- 159 (243)
+++.++..++.|+|..|-|.+.|+|....... |+++|.++ +.+ |+..|...+..+.+. .- .
T Consensus 358 ~~~~a~~~~~vP~itvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~-------~vm~~e~a~~i~~~~~~~~~~~~~~ 429 (493)
T PF01039_consen 358 RLLYALAEATVPKITVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEI-------GVMGPEGAASILYRDELEAAEAEGA 429 (493)
T ss_dssp HHHHHHHHH-S-EEEEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EE-------ESS-HHHHHHHHTHHHHHHSCHCCH
T ss_pred HHHHHHHcCCCCEEEEEeCCccCcchhhhcccccchhhhhhhhc-cee-------eecChhhhheeeehhhhhhhhcccc
Confidence 89999999999999999999999988665555 78888776 655 442233333332221 11 0
Q ss_pred -HH-HHHHHH-h-cCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 160 -AT-ARRDVL-L-RAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 160 -~~-~a~~l~-l-~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
.. ...+.+ . .-+.-++..+...|++|.|+++ .++.....+..+...++
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~ 481 (493)
T PF01039_consen 430 DPEAQRAEKIAEYEDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQK 481 (493)
T ss_dssp SHHHHHHHHHHHHHHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHHHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhC
Confidence 00 011111 1 1223688999999999999998 66766665555544444
No 146
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.089 Score=43.77 Aligned_cols=133 Identities=14% Similarity=0.185 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCE-EEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGS-AFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~-~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
++..+-+.+...|-.++.+++-|= .+-|-+.|+.-.+|. .++..+..+.-||=
T Consensus 101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtagl--------------------------AIYDtMq~ik~~V~ 154 (275)
T KOG0840|consen 101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGL--------------------------AIYDTMQYIKPDVS 154 (275)
T ss_pred CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhh--------------------------hHHHHHHhhCCCce
Confidence 788888888888888776544330 234434333332222 23444555555555
Q ss_pred EEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHH-----HH---HHHhCCHHHHHHHH--hcC----
Q 026137 105 AAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-----LF---REKVGSATARRDVL--LRA---- 170 (243)
Q Consensus 105 a~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~-----~l---~~~~g~~~~a~~l~--l~g---- 170 (243)
..+=|.|.+-|..|..+ .+. .-++.+|..++=+.-|.+|+. .. -+.+-....-.+++ -||
T Consensus 155 Tic~G~Aas~aalLLaa-----G~K-G~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e 228 (275)
T KOG0840|consen 155 TICVGLAASMAALLLAA-----GAK-GKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLE 228 (275)
T ss_pred eeehhhHHhHHHHHHhc-----CCC-cceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence 55557777666544443 222 256677777666555555421 11 11111001111111 234
Q ss_pred ---------cCCCHHHHHHcCchhhhcCC
Q 026137 171 ---------KKIKGEEALRMGLVEAAYDS 190 (243)
Q Consensus 171 ---------~~~~a~eA~~~Glv~~vv~~ 190 (243)
+.++|+||+++||||.|++.
T Consensus 229 ~i~~d~dRd~fmsa~EA~eyGliD~v~~~ 257 (275)
T KOG0840|consen 229 VIEKDMDRDRFMSAEEAKEYGLIDKVIDH 257 (275)
T ss_pred HHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence 44999999999999999974
No 147
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.10 E-value=0.25 Score=45.60 Aligned_cols=143 Identities=24% Similarity=0.283 Sum_probs=83.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCC
Q 026137 22 DEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPM 101 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k 101 (243)
+.-++..-....+..+.+.+.++.... +.+..+.|-.---|. ..+. . +-.-+. -..++... .
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~v--~~l~---------g----~g~iF~-~~a~~Sg~-I 164 (526)
T COG4799 103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEGV--PSLA---------G----YGRIFY-RNARASGV-I 164 (526)
T ss_pred ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccCc--cccc---------c----chHHHH-HHHHhccC-C
Confidence 456777777788888888888876665 555554432222221 1100 0 011111 11223444 9
Q ss_pred cEEEEECCccchhHHHHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCHHHHHHHHhcCcCCCHHH----
Q 026137 102 PTVAAVNGHAAAAGFILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSATARRDVLLRAKKIKGEE---- 177 (243)
Q Consensus 102 p~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e---- 177 (243)
|.|++|-|+|.|||..+-..||++|++++.+++ .++-|+. +-. .||+.++++|
T Consensus 165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~m-------fltGP~~----ik~------------vtGe~V~~e~LGGa 221 (526)
T COG4799 165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSYM-------FLTGPPV----IKA------------VTGEEVSAEELGGA 221 (526)
T ss_pred CEEEEEEecCcccccccccccceEEEEcCCccE-------EeeCHHH----HHh------------hcCcEeehhhccch
Confidence 999999999999999999999999999984322 2322222 111 1333333332
Q ss_pred ---HHHcCchhhhcCChhHHHHHHHHHHHHH
Q 026137 178 ---ALRMGLVEAAYDSEERVAEASMRLGKQL 205 (243)
Q Consensus 178 ---A~~~Glv~~vv~~~~~l~~~a~~~a~~~ 205 (243)
+..-|.+|.+.+++++..+.++++..-+
T Consensus 222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsyl 252 (526)
T COG4799 222 QVHARKSGVADLLAEDDEDAIELVRRLLSYL 252 (526)
T ss_pred hhhcccccceeeeecCHHHHHHHHHHHHHhc
Confidence 2344999999988544444444444443
No 148
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=92.13 E-value=4.7 Score=37.45 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=100.5
Q ss_pred EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHH
Q 026137 13 LTLTGSSNVDEH-RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRP 91 (243)
Q Consensus 13 i~ln~p~~~~~N-~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (243)
|.=|.|. ..| +|+.+-...-.+.++-.. -..+= .|.+--. ..|..|-+-+. ....+....
T Consensus 328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd-~~~iP-lv~L~d~-pGFm~G~~~E~--------------~giik~Gak 388 (526)
T COG4799 328 IIANQPR--HLGGVLDIDSADKAARFIRLCD-AFNIP-LVFLVDT-PGFMPGTDQEY--------------GGIIKHGAK 388 (526)
T ss_pred EEecCcc--ccccccchHHHHHHHHHHHhhh-ccCCC-eEEEeCC-CCCCCChhHHh--------------ChHHHhhhH
Confidence 3346663 344 799998888888884444 34554 4555433 56888875443 345677889
Q ss_pred HHHHHhcCCCcEEEEECCccchhHHHHHH----hcCEEEEecCccceeccccccCCCCChhhH-HHHHH-HhCCHHH-H-
Q 026137 92 LVAAMMDLPMPTVAAVNGHAAAAGFILAL----SHDYVVMRRDKGVLYMSEVDIGLTLPDYCA-ALFRE-KVGSATA-R- 163 (243)
Q Consensus 92 l~~~l~~~~kp~Ia~v~G~~~G~G~~lal----~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~-~~l~~-~~g~~~~-a- 163 (243)
++.++....+|.|..|-|.++|+|...+. ..|+.+|.+ ..++++ +.+-|+ ..+.+ .+-...+ .
T Consensus 389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP--------~a~iaV-MG~egAv~i~~~k~l~~~~~~~~ 459 (526)
T COG4799 389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWP--------TAEIAV-MGPEGAVSILYRKELAAAERPEE 459 (526)
T ss_pred HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecC--------cceeee-cCHHHHHHHHHHHHhhcccCchh
Confidence 99999999999999999999999875543 355555554 445565 333343 33332 2210000 0
Q ss_pred -H----H-HH--hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 164 -R----D-VL--LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 164 -~----~-l~--l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
. + +. ..-+-.++--|.+.|+||.|+++ .+...........+..+
T Consensus 460 ~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p-~~tR~~L~~~l~~~~~k 511 (526)
T COG4799 460 REALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP-ADTRAVLGRALSALANK 511 (526)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-HHHHHHHHHHHHHHhcC
Confidence 0 0 00 11122566678889999999998 44544444444444444
No 149
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=88.11 E-value=1.6 Score=37.96 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHhcC---CCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 27 GPSAIDSILSAIAQAKAEA---TPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~---~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
......++.++|+.+...+ .+-++||.+|.| .++++... .-..+.++|..+|.||
T Consensus 53 G~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGG-------s~eDL~~F---------------N~e~varai~~~~~Pv 110 (319)
T PF02601_consen 53 GEGAAASIVSALRKANEMGQADDFDVIIIIRGGG-------SIEDLWAF---------------NDEEVARAIAASPIPV 110 (319)
T ss_pred ccchHHHHHHHHHHHHhccccccccEEEEecCCC-------ChHHhccc---------------ChHHHHHHHHhCCCCE
Confidence 3456788899999998654 445366666744 33333221 1256788999999999
Q ss_pred EEEECCccchhHHHHHHhcCEEEEecC
Q 026137 104 VAAVNGHAAAAGFILALSHDYVVMRRD 130 (243)
Q Consensus 104 Ia~v~G~~~G~G~~lal~~D~~ia~~~ 130 (243)
|++| ||-.-- .-.=+.+|+|..|+.
T Consensus 111 isaI-GHe~D~-ti~D~vAd~ra~TPt 135 (319)
T PF02601_consen 111 ISAI-GHETDF-TIADFVADLRAPTPT 135 (319)
T ss_pred EEec-CCCCCc-hHHHHHHHhhCCCHH
Confidence 9987 333222 223467888988886
No 150
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=86.14 E-value=7.2 Score=32.36 Aligned_cols=97 Identities=12% Similarity=0.163 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHH-HHHHhcCEEEEecCccceeccccccCCCCChhhHHHHHHHhCCH
Q 026137 82 VHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGF-ILALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAALFREKVGSA 160 (243)
Q Consensus 82 ~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~-~lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~~l~~~~g~~ 160 (243)
.+.+.-...+.+..-+...-|||+.|-|.+++||| ...+.+|..||-++ +.. -. ++--.+.+.+++- .
T Consensus 87 i~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i-------~v-M~~~s~ARVTk~~--v 155 (234)
T PF06833_consen 87 INQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMI-------HV-MGKPSAARVTKRP--V 155 (234)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Cee-------ec-CChHHhHHHhhcC--H
Confidence 34445556666777788999999999999999987 67788898888764 322 22 2333345555442 2
Q ss_pred HHHHHHHhcCcC--CCHHHHHHcCchhhhcC
Q 026137 161 TARRDVLLRAKK--IKGEEALRMGLVEAAYD 189 (243)
Q Consensus 161 ~~a~~l~l~g~~--~~a~eA~~~Glv~~vv~ 189 (243)
..-.++--+--+ ++.+--.++|.++++.+
T Consensus 156 e~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 156 EELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred HHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 333344433333 56677789999999998
No 151
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=85.91 E-value=17 Score=33.13 Aligned_cols=154 Identities=12% Similarity=0.011 Sum_probs=91.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcE
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPT 103 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~ 103 (243)
-.|..+.-..-.+.++...+. .+- .|.+-..++ |-.|.+.+... +.+....++.+.....+|-
T Consensus 363 G~L~s~sa~KgarfIe~c~q~-~IP-Li~l~ni~G-fm~g~~~e~~g--------------IaK~gAklv~a~a~akvpk 425 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQR-NIP-LIFLQNITG-FMVGRAAEAGG--------------IAKHGAKLVYAVACAKVPK 425 (536)
T ss_pred cccchhhhhhhHHHHHHHHhc-CCc-EEEEEccCC-ccccchhhhhc--------------hhhhhhhhhhhhhhccCce
Confidence 356666666666666555543 444 455555544 98888776432 3345567888888999999
Q ss_pred EEEECCccchhHHH---HHHhcCEEEEecCccceeccccccCCCCChhhHH-HHHH-----HhCCHHHHHHHHhcCcCCC
Q 026137 104 VAAVNGHAAAAGFI---LALSHDYVVMRRDKGVLYMSEVDIGLTLPDYCAA-LFRE-----KVGSATARRDVLLRAKKIK 174 (243)
Q Consensus 104 Ia~v~G~~~G~G~~---lal~~D~~ia~~~~a~f~~p~~~~G~~~p~~g~~-~l~~-----~~g~~~~a~~l~l~g~~~~ 174 (243)
|..+-|.+.||-.. ..++-|+.++.++ +++++-. +-++. .+.+ .....+.+.|.+ |.|+.
T Consensus 426 ITiit~~syGG~y~m~sr~~~gd~~yawP~-A~IavmG--------~~~a~~Vi~q~~~e~a~~~~~~~~E~f--~npy~ 494 (536)
T KOG0540|consen 426 ITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVMG--------GKQAANVIFQITLEKAVALKAPYIEKF--GNPYY 494 (536)
T ss_pred EEEEecCccCCcccccccccCCceeEEccc-ceeeecc--------ccchhhhhhhhhhhhhhhhcchHHHHh--cCccH
Confidence 99999999997655 3466788888776 6655321 11211 2221 121112223333 66665
Q ss_pred HHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcCC
Q 026137 175 GEEALRMGLVEAAYDSEERVAEASMRLGKQLAGRK 209 (243)
Q Consensus 175 a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~~ 209 (243)
|...||.|.|+++ .+.....-...+..+.+|
T Consensus 495 ---a~~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p 525 (536)
T KOG0540|consen 495 ---AAARGWDDGIIDP-SDTRKVLGLDLQAAANKP 525 (536)
T ss_pred ---HHHhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence 4678999999988 444443333334444443
No 152
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=85.66 E-value=2.8 Score=38.22 Aligned_cols=80 Identities=20% Similarity=0.224 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137 27 GPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~ 106 (243)
..+...++..+|+.++..+++-++||.+|.| .++++-.. .-..+.+++.++|.|||++
T Consensus 168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~F---------------n~e~~~rai~~~~~Pvis~ 225 (432)
T TIGR00237 168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSF---------------NDEKVARAIFLSKIPIISA 225 (432)
T ss_pred CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhc---------------CcHHHHHHHHcCCCCEEEe
Confidence 4556788899998888766566355555543 23333221 1156788999999999998
Q ss_pred ECCccchhHHHHHHhcCEEEEecC
Q 026137 107 VNGHAAAAGFILALSHDYVVMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~lal~~D~~ia~~~ 130 (243)
| ||-.-- .-.=+.+|.|..|+.
T Consensus 226 i-GHe~D~-ti~D~vAd~ra~TPt 247 (432)
T TIGR00237 226 V-GHETDF-TISDFVADLRAPTPS 247 (432)
T ss_pred c-CcCCCc-cHHHHhhhccCCCcH
Confidence 7 222211 123467899998886
No 153
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=79.95 E-value=5.4 Score=36.29 Aligned_cols=79 Identities=24% Similarity=0.272 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137 27 GPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA 106 (243)
Q Consensus 27 ~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~ 106 (243)
......++.++|+.+.... +-++||.+|.| .++++-.. .-..+.+++..+|.|||++
T Consensus 174 G~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~F---------------n~e~v~~ai~~~~~Pvis~ 230 (438)
T PRK00286 174 GEGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAF---------------NDEAVARAIAASRIPVISA 230 (438)
T ss_pred CccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhcc---------------CcHHHHHHHHcCCCCEEEe
Confidence 3456788888998887643 34356666644 23333221 1156788999999999997
Q ss_pred ECCccchhHHHHHHhcCEEEEecC
Q 026137 107 VNGHAAAAGFILALSHDYVVMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~lal~~D~~ia~~~ 130 (243)
| ||-.-- .-.=+.+|.|..|+.
T Consensus 231 I-GHE~D~-tl~D~vAd~ra~TPt 252 (438)
T PRK00286 231 V-GHETDF-TIADFVADLRAPTPT 252 (438)
T ss_pred c-cCCCCc-cHHHHhhhccCCChH
Confidence 7 222211 223467889998886
No 154
>smart00250 PLEC Plectin repeat.
Probab=77.40 E-value=1.7 Score=25.07 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=17.3
Q ss_pred hcCcCCCHHHHHHcCchhh
Q 026137 168 LRAKKIKGEEALRMGLVEA 186 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~ 186 (243)
.+|+++|-.||.+.||||.
T Consensus 17 ~t~~~lsv~eA~~~glid~ 35 (38)
T smart00250 17 ETGQKLSVEEALRRGLIDP 35 (38)
T ss_pred CCCCCcCHHHHHHcCCCCc
Confidence 3899999999999999985
No 155
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=77.21 E-value=7.6 Score=35.29 Aligned_cols=77 Identities=22% Similarity=0.268 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEE-ecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Q 026137 28 PSAIDSILSAIAQAKAEATPGSAFIT-TSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAA 106 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~vvl-~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~ 106 (243)
.....++.+++..++..+++. ++|+ +| |+.++++-.. .=..+.+++..++.|+|++
T Consensus 175 ~~A~~eIv~aI~~an~~~~~D-vlIVaRG-------GGSiEDLW~F---------------NdE~vaRAi~~s~iPvISA 231 (440)
T COG1570 175 EGAAEEIVEAIERANQRGDVD-VLIVARG-------GGSIEDLWAF---------------NDEIVARAIAASRIPVISA 231 (440)
T ss_pred CCcHHHHHHHHHHhhccCCCC-EEEEecC-------cchHHHHhcc---------------ChHHHHHHHHhCCCCeEee
Confidence 345688999999999888888 4444 33 3345544321 1145788999999999998
Q ss_pred ECCccchhHHHH-HHhcCEEEEecC
Q 026137 107 VNGHAAAAGFIL-ALSHDYVVMRRD 130 (243)
Q Consensus 107 v~G~~~G~G~~l-al~~D~~ia~~~ 130 (243)
| ||-.- +.| =+.+|+|-.|+.
T Consensus 232 V-GHEtD--~tL~DfVAD~RApTPT 253 (440)
T COG1570 232 V-GHETD--FTLADFVADLRAPTPT 253 (440)
T ss_pred c-ccCCC--ccHHHhhhhccCCCch
Confidence 7 22221 222 256788888876
No 156
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=75.66 E-value=11 Score=26.99 Aligned_cols=47 Identities=19% Similarity=0.197 Sum_probs=40.2
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCC--------CCEEEEEec
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEAT--------PGSAFITTS 55 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~--------~~~~vvl~g 55 (243)
++.++..+++.+++++.| ++.....++.+.+.++..... ++ .||+--
T Consensus 1 y~~~~~~~~v~ii~~~g~-------l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~vIlD~ 55 (117)
T PF01740_consen 1 YIEIETHDGVLIIRLDGP-------LFFANAEEFRDRIRKLIDEDPERIKKRQTIK-NVILDM 55 (117)
T ss_dssp SCEEEEETTEEEEEEESE-------ESHHHHHHHHHHHHHHHCCSSS--HTSSSSS-EEEEEE
T ss_pred CCeeEEECCEEEEEEeeE-------EEHHHHHHHHHHHHHhhhcccccccccccce-EEEEEE
Confidence 367889999999999988 999999999999999887765 67 788844
No 157
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=74.07 E-value=1.2 Score=26.83 Aligned_cols=21 Identities=24% Similarity=0.454 Sum_probs=17.4
Q ss_pred hcCcCCCHHHHHHcCchhhhc
Q 026137 168 LRAKKIKGEEALRMGLVEAAY 188 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~vv 188 (243)
-+|++++-++|.+.||||.-.
T Consensus 17 ~tg~~lsv~~A~~~glId~~~ 37 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDSDT 37 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-HHH
T ss_pred CCCeEEcHHHHHHCCCcCHHH
Confidence 478999999999999998653
No 158
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=73.00 E-value=15 Score=31.46 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 026137 34 ILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
+.++|+.+++||+.+ +||+-|.- |.+- ++.+ .+++.+ ....||||+.+-|.+.
T Consensus 188 fid~L~~fe~Dp~T~-~ivmiGEi-----GG~a------------Ee~A-------A~~i~~-~~~~KPVVa~iaG~ta 240 (293)
T COG0074 188 FIDALEMFEADPETE-AIVMIGEI-----GGPA------------EEEA-------AEYIKA-NATRKPVVAYIAGRTA 240 (293)
T ss_pred HHHHHHHHhcCcccc-EEEEEecC-----CCcH------------HHHH-------HHHHHH-hccCCCEEEEEeccCC
Confidence 568899999999999 78887762 1111 2222 223333 3345999999999876
No 159
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=70.24 E-value=32 Score=24.11 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=35.8
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
|.++..+++.++++..| ++.....++.+.+..+-..+.++ .+++--.+
T Consensus 1 ~~~~~~~~~~vi~l~G~-------L~f~~~~~~~~~l~~~~~~~~~~-~vilDls~ 48 (106)
T TIGR02886 1 IEFEVKGDVLIVRLSGE-------LDHHTAERVRRKIDDAIERRPIK-HLILNLKN 48 (106)
T ss_pred CeEEEECCEEEEEEecc-------cchhhHHHHHHHHHHHHHhCCCC-EEEEECCC
Confidence 45678899999999987 77777888888887765444567 78885443
No 160
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=68.46 E-value=22 Score=24.91 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=34.7
Q ss_pred ceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 2 CTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 2 i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
+.++..+++.++++..+ ++......+.+.+..+..++..+ .|++--.+
T Consensus 5 i~~~~~~~~~vi~~~G~-------l~~~~~~~~~~~l~~~~~~~~~~-~vvidls~ 52 (108)
T TIGR00377 5 IETEVQEGVVIVRLSGE-------LDAHTAPLLREKVTPAAERTGPR-PIVLDLED 52 (108)
T ss_pred EEEEEECCEEEEEEecc-------cccccHHHHHHHHHHHHHhcCCC-eEEEECCC
Confidence 45677899999999965 66667777888777766545667 67775443
No 161
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=67.72 E-value=70 Score=27.78 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHhcCCCCEEEEEecCCCccccCCCh-hhHHH----cCCCcchH---HHHHHHHHHHHHH
Q 026137 22 DEHRLGPSAIDSILSAI-AQAKAEATPGSAFITTSHGKFFSNGFDL-AWAQA----AGSRTGAR---ERVHYMFKSFRPL 92 (243)
Q Consensus 22 ~~N~l~~~~~~~l~~~l-~~~~~~~~~~~~vvl~g~g~~F~~G~D~-~~~~~----~~~~~~~~---~~~~~~~~~~~~l 92 (243)
..|.++++-+.+-...+ .++...+..+.+|+|-|..+.|--+-+. ..+.. .....+.. ....+.-....+.
T Consensus 121 a~~~i~~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~ 200 (311)
T PF06258_consen 121 APNRITPERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAA 200 (311)
T ss_pred CCCcCCHHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHH
Confidence 46888888877766555 4455556666344554444555544331 11110 00000000 0000000111222
Q ss_pred HHHHhcCCCcEEEEECCccchhHHHHHHhcCEEEEecCcc
Q 026137 93 VAAMMDLPMPTVAAVNGHAAAAGFILALSHDYVVMRRDKG 132 (243)
Q Consensus 93 ~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~~ia~~~~a 132 (243)
+..... +.|-+...+|.--+--+++...||.+++|+|+.
T Consensus 201 L~~~~~-~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSv 239 (311)
T PF06258_consen 201 LRELLK-DNPGVYIWDGTGENPYLGFLAAADAIVVTEDSV 239 (311)
T ss_pred HHHhhc-CCCceEEecCCCCCcHHHHHHhCCEEEEcCccH
Confidence 222221 223333336666666788999999999999953
No 162
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=67.67 E-value=8.6 Score=29.19 Aligned_cols=52 Identities=10% Similarity=0.096 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 026137 33 SILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~ 111 (243)
.+.+.++.+.+||+.+ +|++.-.+ +.+ -+.+.+..++.... ||+|+..-|..
T Consensus 41 ~~~d~l~~~~~D~~t~-~I~ly~E~-----------~~d--------------~~~f~~~~~~a~~~-KPVv~lk~Grt 92 (138)
T PF13607_consen 41 DFADLLEYLAEDPDTR-VIVLYLEG-----------IGD--------------GRRFLEAARRAARR-KPVVVLKAGRT 92 (138)
T ss_dssp -HHHHHHHHCT-SS---EEEEEES-------------S---------------HHHHHHHHHHHCCC-S-EEEEE----
T ss_pred CHHHHHHHHhcCCCCC-EEEEEccC-----------CCC--------------HHHHHHHHHHHhcC-CCEEEEeCCCc
Confidence 4677888888899999 78875442 000 12345566666666 99999999873
No 163
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=61.87 E-value=18 Score=27.97 Aligned_cols=63 Identities=16% Similarity=0.124 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 026137 32 DSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~ 111 (243)
....++|..+.+||+++ +|++-+.+++ ...+ ..+..+...+...-. ...++|+|+.+-|-.
T Consensus 59 ~~~~~~l~~~~~Dp~v~-vIlvd~~~G~----g~~~------------~~A~~l~~a~~~~~~--~~~~~pvVa~v~GT~ 119 (153)
T PF00549_consen 59 STRNEALEIEAADPEVK-VILVDIVGGI----GSCE------------DPAAGLIPAIKEAKA--EGRKKPVVARVCGTN 119 (153)
T ss_dssp SHHHHHHHHHHTSTTES-EEEEEEESSS----SSHH------------HHHHHHHHHHSHCTH--TTT-SEEEEEEESTT
T ss_pred HHHHHHHHHHhcCCCcc-EEEEEecccc----CchH------------HHHHHHHHHHHhccc--cCCCCcEEEEeeeec
Confidence 35677888888999999 8888654321 1111 111111111111111 357899999999987
Q ss_pred ch
Q 026137 112 AA 113 (243)
Q Consensus 112 ~G 113 (243)
.-
T Consensus 120 ~d 121 (153)
T PF00549_consen 120 AD 121 (153)
T ss_dssp CH
T ss_pred CC
Confidence 65
No 164
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=59.87 E-value=37 Score=29.59 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
++++.+.+|.+.+++.-+++++.++||++|+.
T Consensus 57 ~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTD 88 (323)
T smart00870 57 MTPADWLKLAKRINEALADDGYDGVVVTHGTD 88 (323)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCEEEEecCCc
Confidence 89999999999998866666766577776753
No 165
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=59.50 E-value=36 Score=29.69 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 026137 34 ILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
+.+.|+.+++||+.+ +|++-+... .+- +....+|.+. ....||+|+.+-|...
T Consensus 212 ~~D~L~~~~~Dp~T~-~Ivl~~E~g-----G~~------------e~~aa~fi~~--------~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 212 FIDCLKLFLNDPETE-GIILIGEIG-----GTA------------EEEAAEWIKN--------NPIKKPVVSFIAGITA 264 (317)
T ss_pred HHHHHHHHhhCCCcc-EEEEEEecC-----Cch------------hHHHHHHHHh--------hcCCCcEEEEEecCCC
Confidence 556777777777777 677766421 010 1111222221 2468999999998864
No 166
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=57.66 E-value=52 Score=29.20 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.-|+++.+.+|.+.+.+.-.++++.++||.+|+
T Consensus 78 ~~m~~~~w~~la~~I~~~~~~~~~dGvVItHGT 110 (351)
T COG0252 78 SDMTPEDWLRLAEAINEALDDGDVDGVVITHGT 110 (351)
T ss_pred ccCCHHHHHHHHHHHHHHhccCCCCeEEEeCCC
Confidence 349999999999999999888766646666664
No 167
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=55.56 E-value=1.3e+02 Score=25.73 Aligned_cols=116 Identities=14% Similarity=0.119 Sum_probs=64.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHH-Hc----CCCcchHHHHHHHH
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQ-AA----GSRTGARERVHYMF 86 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~-~~----~~~~~~~~~~~~~~ 86 (243)
++.+|. ..|-+|...+....++..++--.+..+++|++.|..+.|.---|-.... +. .++.+ ......+.
T Consensus 131 ilpi~G----s~h~Vt~~~lAa~~e~~~~~~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g-~~~lisfS 205 (329)
T COG3660 131 ILPING----SPHNVTSQRLAALREAFKHLLPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQG-GSFLISFS 205 (329)
T ss_pred eeeccC----CCCcccHHHhhhhHHHHHhhCCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCC-ceEEEEee
Confidence 456664 4577888999888898888876666674566666667776544432221 10 00000 00000001
Q ss_pred HHHHHHHHH-Hh-cCCCcEEEEECCc--cchhHHHHHHhcCEEEEecCcc
Q 026137 87 KSFRPLVAA-MM-DLPMPTVAAVNGH--AAAAGFILALSHDYVVMRRDKG 132 (243)
Q Consensus 87 ~~~~~l~~~-l~-~~~kp~Ia~v~G~--~~G~G~~lal~~D~~ia~~~~a 132 (243)
+.--+..+. +. +.+-..+..-|+. -..--+.+..++|++|++.|+.
T Consensus 206 RRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDSi 255 (329)
T COG3660 206 RRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADSI 255 (329)
T ss_pred cCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecchh
Confidence 111111111 22 2455566667776 3445678889999999999943
No 168
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=54.76 E-value=28 Score=28.77 Aligned_cols=56 Identities=16% Similarity=0.324 Sum_probs=34.4
Q ss_pred eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhh
Q 026137 7 HGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAW 68 (243)
Q Consensus 7 ~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~ 68 (243)
..+|-++.=|-.. ..|.+. ...++|...+..++....++ |.+=| ...|.+|.|+..
T Consensus 137 tk~V~ivlEnMAG--qGn~vG-~tfeelk~ii~~Ikdk~Rig-VClDT--CH~FaaGyDI~T 192 (281)
T KOG3997|consen 137 TKNVIIVLENMAG--QGNSVG-GTFEELKFIIGKIKDKSRIG-VCLDT--CHTFAAGYDIRT 192 (281)
T ss_pred ccceEEEeecccC--CCCccc-ccHHHHHHHHHhhcchhhhe-eeHhh--hhhhccccccch
Confidence 3445555545443 567666 44567777777777666666 44443 367888888764
No 169
>PLN02522 ATP citrate (pro-S)-lyase
Probab=51.97 E-value=51 Score=31.51 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 026137 34 ILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 34 l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
+.+.|+.+++||+.+ +|++-+. |. .| . +.+.+.+++.. ..||||+.+-|.+-
T Consensus 210 ~~D~L~~~~~Dp~Tk-~IvlygEiGg-----~~-------------e-------~~f~ea~~~a~-~~KPVVa~kaGrsa 262 (608)
T PLN02522 210 LSDHVLRFNNIPQIK-MIVVLGELGG-----RD-------------E-------YSLVEALKQGK-VSKPVVAWVSGTCA 262 (608)
T ss_pred HHHHHHHHhcCCCCC-EEEEEEecCc-----hh-------------H-------HHHHHHHHHhc-CCCCEEEEeccCCC
Confidence 456666677777777 6666654 31 00 1 11223333333 78999999999876
No 170
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=49.80 E-value=1.2e+02 Score=26.79 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
-++++.+..|.+.+++.-.++++.++||++|+.
T Consensus 84 ~mt~~dw~~la~~I~~~~~~~~~~GiVVtHGTD 116 (349)
T TIGR00520 84 DMNEEVLLKLAKGINELLASDDYDGIVITHGTD 116 (349)
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEeCCcc
Confidence 489999999999998877766776566666653
No 171
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=48.83 E-value=67 Score=21.68 Aligned_cols=46 Identities=28% Similarity=0.480 Sum_probs=30.6
Q ss_pred eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
.....+++.++.+..+ |+..-..++.+.+.....++ ++ .+++-..+
T Consensus 2 ~~~~~~~~~ii~l~G~-------l~~~~~~~~~~~~~~~~~~~-~~-~viid~~~ 47 (99)
T cd07043 2 TVEERGGVLVVRLSGE-------LDAATAPELREALEELLAEG-PR-RLVLDLSG 47 (99)
T ss_pred ceEEECCEEEEEEece-------ecccchHHHHHHHHHHHHcC-CC-EEEEECCC
Confidence 3456778989998865 55556667777776665543 56 67775443
No 172
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=48.28 E-value=87 Score=21.73 Aligned_cols=52 Identities=12% Similarity=0.218 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHH-hcCCCcEEEEECC
Q 026137 31 IDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAM-MDLPMPTVAAVNG 109 (243)
Q Consensus 31 ~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~kp~Ia~v~G 109 (243)
-+++.+++.++-+++++. +|+++-. ..+.+.+.+..+ .....|+|..+.+
T Consensus 27 ~ee~~~~l~~l~~~~~~g-IIii~e~----------------------------~~~~~~~~l~~~~~~~~~P~iv~IP~ 77 (95)
T PF01990_consen 27 PEEAEEALKELLKDEDVG-IIIITED----------------------------LAEKIRDELDEYREESSLPLIVEIPS 77 (95)
T ss_dssp HHHHHHHHHHHHHHTTEE-EEEEEHH----------------------------HHTTHHHHHHHHHHTSSSSEEEEEST
T ss_pred HHHHHHHHHHHhcCCCcc-EEEeeHH----------------------------HHHHHHHHHHHHHhccCCceEEEcCC
Confidence 467888888888889988 8888631 122333444444 5679999999976
Q ss_pred cc
Q 026137 110 HA 111 (243)
Q Consensus 110 ~~ 111 (243)
.-
T Consensus 78 ~~ 79 (95)
T PF01990_consen 78 KE 79 (95)
T ss_dssp TC
T ss_pred CC
Confidence 54
No 173
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=46.84 E-value=75 Score=22.01 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=33.8
Q ss_pred eeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 3 TSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 3 ~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
..+..+++.+++++.| ++......+.+.+...-.++.++ .+|+--.
T Consensus 2 ~~~~~~~v~ii~~~G~-------l~f~~~~~~~~~l~~~~~~~~~~-~vilDls 47 (100)
T cd06844 2 PLEKVDDYWVVRLEGE-------LDHHSVEQFKEELLHNITNVAGK-TIVIDIS 47 (100)
T ss_pred ceEEECCEEEEEEEEE-------ecHhhHHHHHHHHHHHHHhCCCC-EEEEECC
Confidence 3456778999999987 78788888888876544445667 7888544
No 174
>PRK11096 ansB L-asparaginase II; Provisional
Probab=42.42 E-value=1.9e+02 Score=25.65 Aligned_cols=30 Identities=10% Similarity=0.051 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
-++++.+.+|.+.+++ .++++.++||++|+
T Consensus 81 ~~t~~~~~~l~~~i~~--~~~~~dGiVVtHGT 110 (347)
T PRK11096 81 DMNDEVWLTLAKKINT--DCDKTDGFVITHGT 110 (347)
T ss_pred cCCHHHHHHHHHHHHH--hcCCCCEEEEeCCC
Confidence 3889999999999987 34566656666665
No 175
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=41.96 E-value=1.3e+02 Score=26.44 Aligned_cols=32 Identities=13% Similarity=0.097 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 24 HRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 24 N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
.-++++.+.+|.+.+++.. +++.++||++|+.
T Consensus 61 s~mt~~~w~~la~~I~~~~--~~~dG~VVtHGTD 92 (335)
T PRK09461 61 SDMTPEDWQHIADDIKANY--DDYDGFVILHGTD 92 (335)
T ss_pred ccCCHHHHHHHHHHHHHHh--ccCCeEEEeeccc
Confidence 3499999999999998755 3455477777764
No 176
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=40.95 E-value=48 Score=30.36 Aligned_cols=53 Identities=9% Similarity=0.115 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccc
Q 026137 33 SILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
.+.+.++.+.+||+.+ +|++...+ +. + -+.|.+..++... .||||+..-|..-
T Consensus 190 ~~~d~l~~l~~D~~t~-~I~ly~E~-----------~~-----~---------~~~f~~aa~~a~~-~KPVv~~k~Grs~ 242 (447)
T TIGR02717 190 DESDLLEYLADDPDTK-VILLYLEG-----------IK-----D---------GRKFLKTAREISK-KKPIVVLKSGTSE 242 (447)
T ss_pred CHHHHHHHHhhCCCCC-EEEEEecC-----------CC-----C---------HHHHHHHHHHHcC-CCCEEEEecCCCh
Confidence 4566777777777777 66665442 00 0 1223444455555 8999999998874
No 177
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=38.63 E-value=1.1e+02 Score=25.29 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=32.3
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~ 58 (243)
|+.++..+.+. ..++ ....++.+.++++.+.+.++. ..+ +|+++|.|.
T Consensus 1 ~iVIKiGGs~l----~~~~--~~~~~~~~~l~~l~~~l~~l~---g~~-vvlVhGgg~ 48 (252)
T cd04241 1 MIILKLGGSVI----TDKD--RPETIREENLERIARELAEAI---DEK-LVLVHGGGS 48 (252)
T ss_pred CEEEEEeceEE----EcCC--CCCccCHHHHHHHHHHHHhcc---CCC-EEEEECCCc
Confidence 44555555432 2332 345799999999999998876 556 788888653
No 178
>PRK06091 membrane protein FdrA; Validated
Probab=37.36 E-value=1.1e+02 Score=28.85 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHhcCCCcEEEEECCccc
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
+++.....+.||||+..-|..-
T Consensus 270 ~fl~aar~~~KPVVvlk~Grs~ 291 (555)
T PRK06091 270 KIINAMKATGKPVVALFLGYTP 291 (555)
T ss_pred HHHHHHhhCCCCEEEEEecCCc
Confidence 4444445569999999988654
No 179
>PF11524 SeleniumBinding: Selenium binding protein; InterPro: IPR021603 Selenium is an important nutrient which needs to be regulated since lack of the nutrient leads to cell abnormalities and high concentrations are toxic.SeBP regulates the level of free selenium in the cell by sequestering the nutrient during transport. SeBP acts as a pentamer and delivers the selenium to the selenophosphate synthetase enzyme []. Each subunit is composed of an alpha helix on top of a four stranded twisted ss sheet, stabilised by hydrogen bonds []. members of this entry are restricted to the archaeal Methanococcales.; PDB: 2JZ7_D.
Probab=37.00 E-value=18 Score=24.37 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=29.4
Q ss_pred hcCcCCCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhc
Q 026137 168 LRAKKIKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAG 207 (243)
Q Consensus 168 l~g~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~ 207 (243)
-|...+++-|..-.|+|++++++.|++.+...+.++..-.
T Consensus 10 TT~~eIPGiely~~gIvS~~~envd~li~~lee~vk~k~~ 49 (81)
T PF11524_consen 10 TTTNEIPGIELYYLGIVSEASENVDELIKKLEEKVKAKGG 49 (81)
T ss_dssp ESSS--TTS--EEEEEEEEBSSSHHHHHHHHHHHHHHTT-
T ss_pred EEcCcCCCeEEEeehhHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 4567789999999999999999888888888888776544
No 180
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=36.79 E-value=2.9e+02 Score=24.12 Aligned_cols=66 Identities=9% Similarity=0.229 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
.++.+-+++|.+.++..-.+.+ +||++|+ --.|+-. +.+.+++..+....+.+|
T Consensus 110 ~is~~~~~~~l~~~~~~l~~~d---~VvlsGS---lP~g~~~--------------------d~y~~li~~~~~~g~~vi 163 (310)
T COG1105 110 EISEAELEQFLEQLKALLESDD---IVVLSGS---LPPGVPP--------------------DAYAELIRILRQQGAKVI 163 (310)
T ss_pred CCCHHHHHHHHHHHHHhcccCC---EEEEeCC---CCCCCCH--------------------HHHHHHHHHHHhcCCeEE
Confidence 4899999999999999555444 7899885 2233311 234555556666677777
Q ss_pred EEECCccchhHH
Q 026137 105 AAVNGHAAAAGF 116 (243)
Q Consensus 105 a~v~G~~~G~G~ 116 (243)
.-..|.++-.++
T Consensus 164 lD~Sg~~L~~~L 175 (310)
T COG1105 164 LDTSGEALLAAL 175 (310)
T ss_pred EECChHHHHHHH
Confidence 777776654443
No 181
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=35.43 E-value=1.6e+02 Score=20.79 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHH-HhcCCCcEEEEECC
Q 026137 32 DSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAA-MMDLPMPTVAAVNG 109 (243)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~kp~Ia~v~G 109 (243)
+++.++++++-.++++. +|++|-. +.....+.+.. +....+|+|..+.|
T Consensus 30 ee~~~~l~~l~~~~d~g-II~Ite~----------------------------~~~~i~e~i~~~~~~~~~P~ii~IP~ 79 (100)
T PRK02228 30 EKLDEAVEEVLEDDDVG-ILVMHDD----------------------------DLEKLPRRLRRTLEESVEPTVVTLGG 79 (100)
T ss_pred HHHHHHHHHHhhCCCEE-EEEEehh----------------------------HhHhhHHHHHHHHhcCCCCEEEEECC
Confidence 56788888886678887 7888631 11222333333 67889999999976
No 182
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=35.39 E-value=1.4e+02 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 25 RLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 25 ~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
-++++.+.+|.+.+++.-++ +.++||+.|+.
T Consensus 53 ~~t~~~~~~la~~i~~~~~~--~~GvVVtHGTD 83 (313)
T PF00710_consen 53 DMTPEDWLELARAIQAALDD--YDGVVVTHGTD 83 (313)
T ss_dssp G--HHHHHHHHHHHHHHHTT--CSEEEEE--ST
T ss_pred hcCHHHHHHHHHHHHHHHHh--cCeEEEecCch
Confidence 39999999999999998843 66567776653
No 183
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=35.10 E-value=1.3e+02 Score=25.73 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 026137 28 PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v 107 (243)
.+|-..+.+.+++.. |+ .|||||....--...|+..+.+ ......|.+..+.+=+...+....||-|
T Consensus 140 ~eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~-------YrnSkyFVeaV~~aR~~ep~~D~LVIfA- 206 (287)
T PF05582_consen 140 KEQPEKIYRLLEEYR--PD---ILVITGHDGYLKNKKDYSDLNN-------YRNSKYFVEAVKEARKYEPNLDDLVIFA- 206 (287)
T ss_pred HHhhHHHHHHHHHcC--CC---EEEEeCchhhhcCCCChhhhhh-------hhccHHHHHHHHHHHhcCCCcccEEEEc-
Confidence 355555566665544 55 7999998654444557777655 2233445555554444445667777653
Q ss_pred CCccc
Q 026137 108 NGHAA 112 (243)
Q Consensus 108 ~G~~~ 112 (243)
|.|-
T Consensus 207 -GACQ 210 (287)
T PF05582_consen 207 -GACQ 210 (287)
T ss_pred -chhH
Confidence 5553
No 184
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=33.94 E-value=1.6e+02 Score=26.84 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
++++.+.+|.+.+.+.-.+ ++.++||+.|+.
T Consensus 133 mtp~~W~~La~~I~~~~~~-~~dGvVVtHGTD 163 (419)
T PRK04183 133 MTPEYWVEIAEAVYEEIKN-GADGVVVAHGTD 163 (419)
T ss_pred CCHHHHHHHHHHHHHHhhc-cCCeEEEecCCc
Confidence 8999999999999886654 455477777765
No 185
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=33.13 E-value=1.2e+02 Score=25.12 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=29.9
Q ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 13 LTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 13 i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
+-|+.| -.++|++|..|..+.+..+.++.- . -+++|.
T Consensus 158 mLFDEP----TSALDPElv~EVL~vm~~LA~eGm-T-MivVTH 194 (240)
T COG1126 158 MLFDEP----TSALDPELVGEVLDVMKDLAEEGM-T-MIIVTH 194 (240)
T ss_pred EeecCC----cccCCHHHHHHHHHHHHHHHHcCC-e-EEEEec
Confidence 557776 489999999999999999998753 4 666665
No 186
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=33.09 E-value=2e+02 Score=26.12 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
++++.+..|.+.+.+.-.+ +..++||++|+.
T Consensus 120 mtp~~w~~La~~I~~~~~~-~~dGvVVtHGTD 150 (404)
T TIGR02153 120 MKPEYWIKIAEAVAKALKE-GADGVVVAHGTD 150 (404)
T ss_pred CCHHHHHHHHHHHHHHhhc-CCCcEEEecCCh
Confidence 8899999999999876654 233377777775
No 187
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=32.34 E-value=4.5e+02 Score=25.06 Aligned_cols=153 Identities=16% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Q 026137 28 PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAV 107 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v 107 (243)
+..++++...|+-+..+|+.. ||+.=.|+- +|+. ....++-+.+-..+..++.++-.++++
T Consensus 158 PGtIeqI~svi~IAka~P~~p--Iilq~egGr--aGGH--------------HSweDld~llL~tYs~lR~~~NIvl~v- 218 (717)
T COG4981 158 PGTIEQIRSVIRIAKANPTFP--IILQWEGGR--AGGH--------------HSWEDLDDLLLATYSELRSRDNIVLCV- 218 (717)
T ss_pred CCcHHHHHHHHHHHhcCCCCc--eEEEEecCc--cCCc--------------cchhhcccHHHHHHHHHhcCCCEEEEe-
Confidence 356889999999999999876 333322211 1221 111222344556677788888877754
Q ss_pred CCccchhHHHH-HHhcCEEEEecCccceecccccc-CCCCChhhHH-HHHHHhCCHHHHHHHHhcCcC------------
Q 026137 108 NGHAAAAGFIL-ALSHDYVVMRRDKGVLYMSEVDI-GLTLPDYCAA-LFREKVGSATARRDVLLRAKK------------ 172 (243)
Q Consensus 108 ~G~~~G~G~~l-al~~D~~ia~~~~a~f~~p~~~~-G~~~p~~g~~-~l~~~~g~~~~a~~l~l~g~~------------ 172 (243)
|+|+.- .=+.+|.-. +-++.|++|..-+ |+. .|+. +...-.-.-..+++++...+-
T Consensus 219 -----GgGiGtp~~aa~YLTG-eWSt~~g~P~MP~DGiL---vGtaaMatKEatTSp~vK~~lv~t~Gvdd~~W~~~g~a 289 (717)
T COG4981 219 -----GGGIGTPDDAAPYLTG-EWSTAYGFPPMPFDGIL---VGTAAMATKEATTSPAVKEALVATQGVDDDEWEGTGKA 289 (717)
T ss_pred -----cCCcCChhhccccccc-chhhhcCCCCCCcceeE---echhHHhhhhccCCHHHHHHHhhCCCCCchhceecCCC
Confidence 444322 233455444 3456788887664 442 2222 222111111223444432222
Q ss_pred -----------------CCHHHHHHcCchhhhcCChhHHHHHHHHHHHHHhcC
Q 026137 173 -----------------IKGEEALRMGLVEAAYDSEERVAEASMRLGKQLAGR 208 (243)
Q Consensus 173 -----------------~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~~~~ 208 (243)
++-+-+.-+-++|++.-+...+.++=.++.++|.+.
T Consensus 290 ~~Gm~s~rSqLgadIheidn~~~~~~rlldev~~d~~a~~arRdeII~aln~t 342 (717)
T COG4981 290 PGGMASVRSQLGADIHEIDNRGAMAGRLLDEVAGDLPAVAARRDEIIEALNKT 342 (717)
T ss_pred CCceeeehhhhCCcHHhhhhHHHHHHHHHhhhhcccHHHHHHHHHHHHHHhhh
Confidence 344455666678887766456666667777777653
No 188
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=32.31 E-value=1.2e+02 Score=24.50 Aligned_cols=98 Identities=18% Similarity=0.035 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHc---CCCcchHHHHHHHH
Q 026137 10 VFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAA---GSRTGARERVHYMF 86 (243)
Q Consensus 10 v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~---~~~~~~~~~~~~~~ 86 (243)
|++|++++ |+....+++.++++++.... ++ .+||== -++.|+++...... .. +..........
T Consensus 50 igYi~i~s--------f~~~~~~~~~~~l~~~~~~~-~~-~lIlDL---R~N~GG~~~~~~~i~~~f~-~~~~~~~~~~~ 115 (211)
T cd07560 50 IGYIRITS--------FSENTAEELKKALKELKKQG-MK-GLILDL---RNNPGGLLDEAVEIADLFL-PGGPIVSTKGR 115 (211)
T ss_pred eEEEEEcc--------cCchhHHHHHHHHHHHHhcc-Cc-eEEEEc---CCCCCCCHHHHHHHHHHhc-CCCeEEEEEec
Confidence 77787774 44567889999999988753 56 566532 13344444322110 00 00000000000
Q ss_pred HHHHHHH--HHHhcCCCcEEEEECCccchhHHHHHHh
Q 026137 87 KSFRPLV--AAMMDLPMPTVAAVNGHAAAAGFILALS 121 (243)
Q Consensus 87 ~~~~~l~--~~l~~~~kp~Ia~v~G~~~G~G~~lal~ 121 (243)
..-.... ..-....+|++..+++.+.+++=.++.+
T Consensus 116 ~g~~~~~~~~~~~~~~~pvvVLvn~~TaSaaE~~a~~ 152 (211)
T cd07560 116 NGKREAYASDDGGLYDGPLVVLVNGGSASASEIVAGA 152 (211)
T ss_pred CCceEEEecCCCccCCCCEEEEeCCCcccHHHHHHHH
Confidence 0000000 0011468999999999998887555544
No 189
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=32.08 E-value=1.6e+02 Score=25.17 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEEC
Q 026137 29 SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVN 108 (243)
Q Consensus 29 ~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~ 108 (243)
+|-+.+.+.+++.. |+ .+||||....--...|...+.+. .....|.+..+.+=+...+....+|-|
T Consensus 140 eqp~~i~~Ll~~~~--PD---IlViTGHD~~~K~~~d~~dl~~Y-------rnSkyFVeaVk~aR~y~~~~D~LVIFA-- 205 (283)
T TIGR02855 140 EMPEKVLDLIEEVR--PD---ILVITGHDAYSKNKGNYMDLNAY-------RHSKYFVETVREARKYVPSLDQLVIFA-- 205 (283)
T ss_pred hchHHHHHHHHHhC--CC---EEEEeCchhhhcCCCChhhhhhh-------hhhHHHHHHHHHHHhcCCCcccEEEEc--
Confidence 44555555555544 55 78999986555555777776652 223444444444444444666777653
Q ss_pred CccchhHHHHHH
Q 026137 109 GHAAAAGFILAL 120 (243)
Q Consensus 109 G~~~G~G~~lal 120 (243)
|.|- ..+|-.+
T Consensus 206 GACQ-S~yEall 216 (283)
T TIGR02855 206 GACQ-SHFESLI 216 (283)
T ss_pred chhH-HHHHHHH
Confidence 5554 2344443
No 190
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=31.67 E-value=1.4e+02 Score=23.81 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 199 (218)
T cd03255 161 IILADEP----TGNLDSETGKEVMELLRELNKEAGTT-IVVVTH 199 (218)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCe-EEEEEC
Confidence 4567876 58999999999999999987644443 555554
No 191
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=31.16 E-value=1.1e+02 Score=25.10 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEECCcc
Q 026137 87 KSFRPLVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 87 ~~~~~l~~~l~~~~kp~Ia~v~G~~ 111 (243)
-.+.+++..+..+.++++...-|+-
T Consensus 80 ~KLcs~~kkld~mkkkvlGICFGHQ 104 (245)
T KOG3179|consen 80 KKLCSFVKKLDFMKKKVLGICFGHQ 104 (245)
T ss_pred HHHHHHHHHHHhhccceEEEeccHH
Confidence 3467778888888899888777763
No 192
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=31.01 E-value=1.4e+02 Score=23.65 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+ ... +|++|.
T Consensus 155 llllDEP----t~~LD~~~~~~~~~~l~~~~~~-~~t-vi~~sH 192 (211)
T cd03225 155 ILLLDEP----TAGLDPAGRRELLELLKKLKAE-GKT-IIIVTH 192 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHc-CCE-EEEEeC
Confidence 4567876 5899999999999999998765 433 555554
No 193
>smart00463 SMR Small MutS-related domain.
Probab=30.96 E-value=1.1e+02 Score=20.17 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCEEEEEecCCCc
Q 026137 28 PSAIDSILSAIAQAKAEAT-PGSAFITTSHGKF 59 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~-~~~~vvl~g~g~~ 59 (243)
.+.+..|.+.|+++..... -. +.|++|.|..
T Consensus 12 ~eA~~~l~~~l~~~~~~~~~~~-~~II~G~G~~ 43 (80)
T smart00463 12 EEALTALDKFLNNARLKGLEQK-LVIITGKGKH 43 (80)
T ss_pred HHHHHHHHHHHHHHHHcCCCce-EEEEEcccCC
Confidence 4677888888988887765 45 8999999843
No 194
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=30.04 E-value=2.2e+02 Score=24.97 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
++++.+.+|.+.+++.-.+ +.++||++|+.
T Consensus 59 ~tp~~w~~la~~I~~~~~~--~dG~VVtHGTD 88 (336)
T TIGR00519 59 MKPEYWVEIAEAVKKEYDD--YDGFVITHGTD 88 (336)
T ss_pred CCHHHHHHHHHHHHHHHhc--CCeEEEccCCc
Confidence 8999999999999875543 45477777764
No 195
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=28.69 E-value=1.6e+02 Score=23.64 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 167 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 205 (228)
T PRK10584 167 VLFADEP----TGNLDRQTGDKIADLLFSLNREHGTT-LILVTH 205 (228)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4667876 58999999999999999987653433 555554
No 196
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=28.64 E-value=2.2e+02 Score=22.42 Aligned_cols=49 Identities=22% Similarity=0.223 Sum_probs=33.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChh
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLA 67 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~ 67 (243)
.+-++.| .+.+|......+.+.+.++.++ .. .+|+++....|-...|..
T Consensus 148 ~lilDEP----~~~LD~~~~~~l~~~l~~~~~~-~~--tiii~sh~~~~~~~~d~~ 196 (200)
T PRK13540 148 LWLLDEP----LVALDELSLLTIITKIQEHRAK-GG--AVLLTSHQDLPLNKADYE 196 (200)
T ss_pred EEEEeCC----CcccCHHHHHHHHHHHHHHHHc-CC--EEEEEeCCchhccccchh
Confidence 4567776 5889999999999999998654 33 344444444554545544
No 197
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=28.32 E-value=1.8e+02 Score=22.12 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++ ... +|++|.
T Consensus 103 illlDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh 140 (163)
T cd03216 103 LLILDEP----TAALTPAEVERLFKVIRRLRAQ-GVA-VIFISH 140 (163)
T ss_pred EEEEECC----CcCCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5889999999999999998654 433 555554
No 198
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.10 E-value=1.7e+02 Score=23.25 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 149 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 187 (211)
T cd03298 149 VLLLDEP----FAALDPALRAEMLDLVLDLHAETKMT-VLMVTH 187 (211)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4567876 58899999999999999987644443 555554
No 199
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=27.93 E-value=1.7e+02 Score=23.39 Aligned_cols=39 Identities=10% Similarity=0.147 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 162 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH 200 (221)
T TIGR02211 162 LVLADEP----TGNLDNNNAKIIFDLMLELNRELNTS-FLVVTH 200 (221)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58999999999999999987654433 555554
No 200
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.65 E-value=1.7e+02 Score=23.29 Aligned_cols=39 Identities=18% Similarity=0.130 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 190 (214)
T cd03297 152 LLLLDEP----FSALDRALRLQLLPELKQIKKNLNIP-VIFVTH 190 (214)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEec
Confidence 4567776 58899999999999999987643433 555554
No 201
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=27.61 E-value=1.8e+02 Score=23.33 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=29.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 152 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~tH 190 (220)
T cd03265 152 VLFLDEP----TIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTH 190 (220)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58999999999999999987653443 566655
No 202
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=27.53 E-value=1.8e+02 Score=23.14 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 149 llllDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-ii~vsh 187 (213)
T TIGR01277 149 ILLLDEP----FSALDPLLREEMLALVKQLCSERQRT-LLMVTH 187 (213)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987654443 555554
No 203
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=27.16 E-value=1.9e+02 Score=23.57 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 212 (236)
T cd03267 174 ILFLDEP----TIGLDVVAQENIRNFLKEYNRERGTT-VLLTSH 212 (236)
T ss_pred EEEEcCC----CCCCCHHHHHHHHHHHHHHHhcCCCE-EEEEec
Confidence 4667876 58999999999999999987654433 455544
No 204
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=27.15 E-value=1.8e+02 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 204 (228)
T cd03257 166 LLIADEP----TSALDVSVQAQILDLLKKLQEELGLT-LLFITH 204 (228)
T ss_pred EEEecCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567776 58899999999999999987653433 555554
No 205
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.81 E-value=1.9e+02 Score=23.13 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|.....++.+.+.++..+.... +|++|.
T Consensus 152 lllLDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sH 190 (220)
T cd03293 152 VLLLDEP----FSALDALTREQLQEELLDIWRETGKT-VLLVTH 190 (220)
T ss_pred EEEECCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4567876 58899999999999999986543433 556554
No 206
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.78 E-value=1.8e+02 Score=23.54 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|+++.
T Consensus 151 llllDEP----~~gLD~~~~~~l~~~l~~~~~~~~~t-iii~sh 189 (232)
T cd03300 151 VLLLDEP----LGALDLKLRKDMQLELKRLQKELGIT-FVFVTH 189 (232)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567776 58899999999999999987643444 555554
No 207
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.64 E-value=1.9e+02 Score=23.04 Aligned_cols=39 Identities=13% Similarity=0.119 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++....... +|++|.
T Consensus 151 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 189 (213)
T cd03259 151 LLLLDEP----LSALDAKLREELREELKELQRELGIT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4567876 58899999999999999987543433 555554
No 208
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=26.60 E-value=1.9e+02 Score=23.41 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 135 lllLDEP----t~gLD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 173 (230)
T TIGR01184 135 VLLLDEP----FGALDALTRGNLQEELMQIWEEHRVT-VLMVTH 173 (230)
T ss_pred EEEEcCC----CcCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987654443 555554
No 209
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=26.34 E-value=1.9e+02 Score=23.37 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|.....++.+.+.++..+.... +|++|.
T Consensus 166 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~sH 204 (233)
T PRK11629 166 LVLADEP----TGNLDARNADSIFQLLGELNRLQGTA-FLVVTH 204 (233)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 4667876 58899999999999999987544433 555554
No 210
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=26.12 E-value=1.8e+02 Score=23.58 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 157 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~vsH 195 (235)
T cd03261 157 LLLYDEP----TAGLDPIASGVIDDLIRSLKKELGLT-SIMVTH 195 (235)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEec
Confidence 4567776 58899999999999999987643433 555554
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=26.11 E-value=2e+02 Score=22.23 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... ++++|.
T Consensus 118 llllDEP----~~~LD~~~~~~~~~~l~~~~~~~~~t-iii~sh 156 (180)
T cd03214 118 ILLLDEP----TSHLDIAHQIELLELLRRLARERGKT-VVMVLH 156 (180)
T ss_pred EEEEeCC----ccCCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987642333 555554
No 212
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=25.91 E-value=2.1e+02 Score=24.45 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=30.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.+-|+.| .|.+|+....++.+.+..+..+.. + .|++|++
T Consensus 157 lliLDEP----t~GLDp~~~~~~~~~l~~l~~~g~-~-tvlissH 195 (293)
T COG1131 157 LLILDEP----TSGLDPESRREIWELLRELAKEGG-V-TILLSTH 195 (293)
T ss_pred EEEECCC----CcCCCHHHHHHHHHHHHHHHhCCC-c-EEEEeCC
Confidence 4567876 599999999999999999998765 3 4666553
No 213
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.88 E-value=1.3e+02 Score=20.08 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCC
Q 026137 28 PSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64 (243)
Q Consensus 28 ~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~ 64 (243)
.+....+.+.|+.+.....-. +.|+||.|..-..|.
T Consensus 9 ~eA~~~l~~~l~~~~~~~~~~-~~II~G~G~hS~~g~ 44 (83)
T PF01713_consen 9 EEALRALEEFLDEARQRGIRE-LRIITGKGNHSKGGV 44 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTHSE-EEEE--STCTCCTSH
T ss_pred HHHHHHHHHHHHHHHHcCCCE-EEEEeccCCCCCCCc
Confidence 466778888888888766555 899999985444443
No 214
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=25.74 E-value=1.9e+02 Score=23.30 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sh~ 197 (225)
T PRK10247 158 VLLLDEI----TSALDESNKHNVNEIIHRYVREQNIA-VLWVTHD 197 (225)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECC
Confidence 4567776 58899999999999999987654444 5666553
No 215
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=25.73 E-value=1.9e+02 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.3
Q ss_pred CCcEEEEECCccc
Q 026137 100 PMPTVAAVNGHAA 112 (243)
Q Consensus 100 ~kp~Ia~v~G~~~ 112 (243)
.||+|+..-|..-
T Consensus 233 ~KPVV~lk~Grs~ 245 (300)
T PLN00125 233 EKPVVAFIAGLTA 245 (300)
T ss_pred CCCEEEEEecCCC
Confidence 8999999988863
No 216
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=25.56 E-value=1.8e+02 Score=24.23 Aligned_cols=39 Identities=10% Similarity=0.083 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.|.++.+..... +|++|.
T Consensus 170 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-viivsH 208 (267)
T PRK15112 170 VIIADEA----LASLDMSMRSQLINLMLELQEKQGIS-YIYVTQ 208 (267)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCcE-EEEEeC
Confidence 4667876 58899999999999999987643433 555554
No 217
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=25.53 E-value=2.4e+02 Score=19.62 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=31.1
Q ss_pred eeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 4 SEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 4 ~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
+...+++..+.++.| ++.....++.+.+...-.....+ .||+--
T Consensus 5 i~~~~~~~v~~l~G~-------L~~~~a~~~~~~l~~~~~~~~~~-~vvlDl 48 (109)
T cd07041 5 IPVWDGVLVLPLIGD-------LDDERAEQLQERLLEAISRRRAR-GVIIDL 48 (109)
T ss_pred EEEeCCEEEEeeeee-------ECHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence 456778999999987 88888888888764433223566 688843
No 218
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=25.22 E-value=1.9e+02 Score=24.00 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 173 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-vii~tH 211 (262)
T PRK09984 173 VILADEP----IASLDPESARIVMDTLRDINQNDGIT-VVVTLH 211 (262)
T ss_pred EEEecCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4667876 58999999999999999997654443 566655
No 219
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=25.22 E-value=1.9e+02 Score=24.09 Aligned_cols=39 Identities=5% Similarity=0.139 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|.....++.+.+.++..+.... +|++|.
T Consensus 164 lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~g~t-iiivsH 202 (269)
T PRK11831 164 LIMFDEP----FVGQDPITMGVLVKLISELNSALGVT-CVVVSH 202 (269)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCcE-EEEEec
Confidence 4567876 58899999999999999987654433 555554
No 220
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=25.17 E-value=2.1e+02 Score=22.76 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++... ... +|++|.
T Consensus 153 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-vi~~sH 190 (213)
T cd03235 153 LLLLDEP----FAGVDPKTQEDIYELLRELRRE-GMT-ILVVTH 190 (213)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHhc-CCE-EEEEeC
Confidence 3567776 5899999999999999998753 433 555554
No 221
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=24.79 E-value=2.1e+02 Score=22.67 Aligned_cols=39 Identities=8% Similarity=0.068 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 151 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-vi~~sH 189 (213)
T cd03301 151 VFLMDEP----LSNLDAKLRVQMRAELKRLQQRLGTT-TIYVTH 189 (213)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567876 58899999999999999987653433 555554
No 222
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=24.64 E-value=2.2e+02 Score=22.92 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.++.... +|++|.
T Consensus 152 illlDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sH 190 (230)
T TIGR03410 152 LLLLDEP----TEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQ 190 (230)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHcCCcE-EEEEeC
Confidence 4567776 58999999999999999987643433 555554
No 223
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=24.61 E-value=2.3e+02 Score=22.58 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++.+. ... +|++|.
T Consensus 159 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~vsH 196 (216)
T TIGR00960 159 LLLADEP----TGNLDPELSRDIMRLFEEFNRR-GTT-VLVATH 196 (216)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5899999999999999998654 433 566655
No 224
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.13 E-value=2.1e+02 Score=23.05 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 161 lllLDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH 199 (233)
T cd03258 161 VLLCDEA----TSALDPETTQSILALLRDINRELGLT-IVLITH 199 (233)
T ss_pred EEEecCC----CCcCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567876 58999999999999999987653433 555554
No 225
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.02 E-value=2.1e+02 Score=23.22 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.|.++..+.... +|++|.
T Consensus 165 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH 203 (241)
T cd03256 165 LILADEP----VASLDPASSRQVMDLLKRINREEGIT-VIVSLH 203 (241)
T ss_pred EEEEeCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987644443 556555
No 226
>PRK10908 cell division protein FtsE; Provisional
Probab=23.97 E-value=2.3e+02 Score=22.68 Aligned_cols=38 Identities=16% Similarity=0.149 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|....+++.+.+.++..+ ... +|++|.
T Consensus 158 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sH 195 (222)
T PRK10908 158 VLLADEP----TGNLDDALSEGILRLFEEFNRV-GVT-VLMATH 195 (222)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5899999999999999998654 433 555554
No 227
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=23.91 E-value=2.2e+02 Score=23.74 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .|.+|......+.+.|.++..+.... +|++|.
T Consensus 154 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-viivsH 192 (257)
T PRK11247 154 LLLLDEP----LGALDALTRIEMQDLIESLWQQHGFT-VLLVTH 192 (257)
T ss_pred EEEEeCC----CCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567776 58999999999999999986543433 555554
No 228
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.74 E-value=2.1e+02 Score=23.35 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 156 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-vii~sH 194 (242)
T cd03295 156 LLLMDEP----FGALDPITRDQLQEEFKRLQQELGKT-IVFVTH 194 (242)
T ss_pred EEEecCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4567776 58999999999999999987643433 555554
No 229
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=23.63 E-value=2.2e+02 Score=23.61 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=28.6
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.|.++....... +|++|.
T Consensus 149 lllLDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-viivsH 187 (255)
T PRK11248 149 LLLLDEP----FGALDAFTREQMQTLLLKLWQETGKQ-VLLITH 187 (255)
T ss_pred EEEEeCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567876 58999999999999999985433433 555554
No 230
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=23.61 E-value=2.4e+02 Score=21.60 Aligned_cols=38 Identities=21% Similarity=0.243 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++.+. ... +|++|.
T Consensus 117 ~lllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh 154 (173)
T cd03246 117 ILVLDEP----NSHLDVEGERALNQAIAALKAA-GAT-RIVIAH 154 (173)
T ss_pred EEEEECC----ccccCHHHHHHHHHHHHHHHhC-CCE-EEEEeC
Confidence 4567776 5899999999999999998653 433 555554
No 231
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=23.45 E-value=1.7e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcCC--CcEEEEECCccchhHHHHHHhcCE
Q 026137 85 MFKSFRPLVAAMMDLP--MPTVAAVNGHAAAAGFILALSHDY 124 (243)
Q Consensus 85 ~~~~~~~l~~~l~~~~--kp~Ia~v~G~~~G~G~~lal~~D~ 124 (243)
....+...+..+...+ .+--..+=|+|.||.+.+.++++.
T Consensus 78 ~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~ 119 (218)
T PF01738_consen 78 VAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD 119 (218)
T ss_dssp HHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc
Confidence 3445566677778777 334445679999999999888764
No 232
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.42 E-value=2.5e+02 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... ++++|.
T Consensus 121 llilDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH 159 (178)
T cd03229 121 VLLLDEP----TSALDPITRREVRALLKSLQAQLGIT-VVLVTH 159 (178)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567876 58899999999999999987653333 455554
No 233
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.37 E-value=2.2e+02 Score=23.11 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 157 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH 195 (239)
T cd03296 157 VLLLDEP----FGALDAKVRKELRRWLRRLHDELHVT-TVFVTH 195 (239)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567876 58899999999999999987643433 555554
No 234
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=23.33 E-value=2.2e+02 Score=23.14 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=29.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 166 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iii~tH 204 (243)
T TIGR02315 166 LILADEP----IASLDPKTSKQVMDYLKRINKEDGIT-VIINLH 204 (243)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567776 58899999999999999986543433 556655
No 235
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=23.32 E-value=2.1e+02 Score=24.84 Aligned_cols=39 Identities=8% Similarity=0.237 Sum_probs=31.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.|-++.| .+++|...-.++.+.|.++.++.... +|++|.
T Consensus 179 llilDEP----ts~LD~~~~~~i~~lL~~l~~~~g~t-ii~itH 217 (330)
T PRK15093 179 LLIADEP----TNAMEPTTQAQIFRLLTRLNQNNNTT-ILLISH 217 (330)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEEC
Confidence 4567776 58999999999999999998755555 677775
No 236
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=23.31 E-value=2.1e+02 Score=24.23 Aligned_cols=39 Identities=8% Similarity=0.277 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++..+.... +|++|.
T Consensus 166 illlDEP----t~~LD~~~~~~l~~~l~~l~~~~g~t-vl~vtH 204 (286)
T PRK13646 166 IIVLDEP----TAGLDPQSKRQVMRLLKSLQTDENKT-IILVSH 204 (286)
T ss_pred EEEEECC----cccCCHHHHHHHHHHHHHHHHhCCCE-EEEEec
Confidence 4567876 58999999999999999997654444 666654
No 237
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=23.24 E-value=2.2e+02 Score=23.52 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.+.++..+.... +|++|.
T Consensus 172 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-ii~isH 210 (258)
T PRK11701 172 LVFMDEP----TGGLDVSVQARLLDLLRGLVRELGLA-VVIVTH 210 (258)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEeC
Confidence 4567876 58899999999999999887643433 556655
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.22 E-value=2.4e+02 Score=21.60 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++ ... +|++|.
T Consensus 116 illlDEP----t~~LD~~~~~~l~~~l~~~~~~-g~t-iii~th 153 (173)
T cd03230 116 LLILDEP----TSGLDPESRREFWELLRELKKE-GKT-ILLSSH 153 (173)
T ss_pred EEEEeCC----ccCCCHHHHHHHHHHHHHHHHC-CCE-EEEECC
Confidence 4567776 5889999999999999998765 433 555554
No 239
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=22.92 E-value=2.4e+02 Score=22.85 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|..
T Consensus 153 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~ 192 (236)
T TIGR03864 153 LLLLDEP----TVGLDPASRAAIVAHVRALCRDQGLS-VLWATHL 192 (236)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecC
Confidence 4567876 58899999999999999987543433 5555543
No 240
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=22.79 E-value=2.5e+02 Score=22.05 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+ ... +|++|.
T Consensus 155 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sh 192 (206)
T TIGR03608 155 LILADEP----TGSLDPKNRDEVLDLLLELNDE-GKT-IIIVTH 192 (206)
T ss_pred EEEEeCC----cCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEeC
Confidence 4567876 5899999999999999998754 433 555554
No 241
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.78 E-value=5e+02 Score=22.92 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=36.2
Q ss_pred HHHhcCCCCEEEEEecCC--CccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEE
Q 026137 40 QAKAEATPGSAFITTSHG--KFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTV 104 (243)
Q Consensus 40 ~~~~~~~~~~~vvl~g~g--~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~I 104 (243)
.+.+++.+.++||.-|.. ..|-.|-....+.. ......|.+.+.+++..+.+...||+
T Consensus 171 ~l~~~~~~a~vVV~lGaND~q~~~~gd~~~kf~S-------~~W~~eY~kRvd~~l~ia~~~~~~V~ 230 (354)
T COG2845 171 LLDKHPKPAAVVVMLGANDRQDFKVGDVYEKFRS-------DEWTKEYEKRVDAILKIAHTHKVPVL 230 (354)
T ss_pred HHHhcCCccEEEEEecCCCHHhcccCCeeeecCc-------hHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 334555676455555653 66666664444432 56667777788888887777666664
No 242
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=22.54 E-value=2.3e+02 Score=23.55 Aligned_cols=40 Identities=13% Similarity=0.059 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.+-++.| .+.+|......+.+.|.++..+.... +|++|..
T Consensus 164 llllDEP----t~gLD~~~~~~l~~~L~~l~~~~~~t-iii~tH~ 203 (265)
T PRK10253 164 IMLLDEP----TTWLDISHQIDLLELLSELNREKGYT-LAAVLHD 203 (265)
T ss_pred EEEEeCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 4567776 58899999999999999987644444 5666553
No 243
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=22.26 E-value=2.4e+02 Score=23.32 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 136 llllDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 174 (246)
T cd03237 136 IYLLDEP----SAYLDVEQRLMASKVIRRFAENNEKT-AFVVEH 174 (246)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987654433 556554
No 244
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=22.20 E-value=2.4e+02 Score=23.46 Aligned_cols=40 Identities=13% Similarity=0.086 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|..
T Consensus 168 lllLDEP----t~~LD~~~~~~~~~~l~~l~~~~~~t-iii~sH~ 207 (265)
T PRK10575 168 CLLLDEP----TSALDIAHQVDVLALVHRLSQERGLT-VIAVLHD 207 (265)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCC
Confidence 4567876 58899999999999999987654444 5666553
No 245
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.05 E-value=2.5e+02 Score=22.48 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=23.8
Q ss_pred CCCH-HHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCC
Q 026137 25 RLGP-SAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64 (243)
Q Consensus 25 ~l~~-~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~ 64 (243)
.++. +.-.+|.+.|.++... .++.|.|++|.|. |.|.
T Consensus 103 G~tq~eAr~~L~~Fi~~a~~~-~~rcv~VihGkG~--s~g~ 140 (184)
T COG2840 103 GLTQEEARQELGAFIARARAE-GLRCVLVIHGKGR--SKGS 140 (184)
T ss_pred CCCHHHHHHHHHHHHHHHHHh-CCcEEEEEeCCCc--CCCC
Confidence 3553 4445566666666654 5554899999987 6664
No 246
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=22.00 E-value=2.6e+02 Score=22.94 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.|.++.+..... +|++|.
T Consensus 174 llllDEP----t~~LD~~~~~~l~~~L~~~~~~~~~t-ii~~sH 212 (255)
T PRK11300 174 ILMLDEP----AAGLNPKETKELDELIAELRNEHNVT-VLLIEH 212 (255)
T ss_pred EEEEcCC----ccCCCHHHHHHHHHHHHHHHhhcCCE-EEEEeC
Confidence 4567776 58999999999999999987643444 556655
No 247
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=21.97 E-value=2.4e+02 Score=23.11 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 167 llllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 205 (252)
T TIGR03005 167 VMLFDEV----TSALDPELVGEVLNVIRRLASEHDLT-MLLVTH 205 (252)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCcE-EEEEeC
Confidence 4667877 48899999999999999987653444 566665
No 248
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=21.96 E-value=3e+02 Score=23.95 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
++++.+.+|.+.+.+.-.+ +.++||++|+.
T Consensus 60 ~t~~~w~~l~~~I~~~~~~--~dGiVVtHGTD 89 (323)
T cd00411 60 MTDEDWLKIAKDINELYDS--YDGFVITHGTD 89 (323)
T ss_pred CCHHHHHHHHHHHHHHHHh--cCcEEEEcCcc
Confidence 8999999999988776544 44377777764
No 249
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=21.93 E-value=2.5e+02 Score=23.05 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 169 vlllDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~vsH 207 (253)
T TIGR02323 169 LVFMDEP----TGGLDVSVQARLLDLLRGLVRDLGLA-VIIVTH 207 (253)
T ss_pred EEEEcCC----CccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999886543444 566654
No 250
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=21.81 E-value=3.3e+02 Score=22.16 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=23.0
Q ss_pred CCCCC---HHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 23 EHRLG---PSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 23 ~N~l~---~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
.|.+. .+.+.++.+.++.+..+++ +||++|.
T Consensus 17 ~~~~g~~~~~~~~~i~~~~~~~~~~~D---~viiaGD 50 (232)
T cd07393 17 MDVFGPEWKNHTEKIKENWDNVVAPED---IVLIPGD 50 (232)
T ss_pred CcccCccHHHHHHHHHHHHHhcCCCCC---EEEEcCC
Confidence 45555 6888888888888875444 8999884
No 251
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.75 E-value=2.3e+02 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|+....++.+.+.++..+.... +|++|.
T Consensus 166 llllDEP----t~~LD~~~~~~l~~~L~~l~~~~g~t-viiitH 204 (290)
T PRK13634 166 VLVLDEP----TAGLDPKGRKEMMEMFYKLHKEKGLT-TVLVTH 204 (290)
T ss_pred EEEEECC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58999999999999999997654544 566654
No 252
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=21.73 E-value=1.6e+02 Score=27.94 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEECCccchhHHHHHHhcCE
Q 026137 79 RERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHAAAAGFILALSHDY 124 (243)
Q Consensus 79 ~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~~G~G~~lal~~D~ 124 (243)
.+....-...+.+.+..+.++..|+|.+||-+..----++..--++
T Consensus 351 ~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~ 396 (557)
T PRK13505 351 VEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKEL 396 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4445555677888888999999999999999988777666544333
No 253
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.43 E-value=2.9e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.189 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++... ... +|++|.
T Consensus 147 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-ii~~sH 184 (205)
T cd03226 147 LLIFDEP----TSGLDYKNMERVGELIRELAAQ-GKA-VIVITH 184 (205)
T ss_pred EEEEeCC----CccCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5899999999999999998654 333 455544
No 254
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=21.43 E-value=3.1e+02 Score=23.16 Aligned_cols=56 Identities=14% Similarity=0.241 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEEecC-CCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Q 026137 33 SILSAIAQAKAEATPGSAFITTSH-GKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~vvl~g~-g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia~v~G~~ 111 (243)
.|.++|+.+-.|++.+ .+|+-|. |+ .- ++.+.+|+... .-..-+||||+.+-|..
T Consensus 218 ~FID~L~vFl~D~~t~-GIiliGEIGG------~A------------Ee~AA~flk~~-----nSg~~~kPVvsFIAG~t 273 (329)
T KOG1255|consen 218 NFIDCLEVFLEDPETE-GIILIGEIGG------SA------------EEEAAEFLKEY-----NSGSTAKPVVSFIAGVT 273 (329)
T ss_pred cHHHHHHHHhcCcccc-eEEEEeccCC------hh------------hHHHHHHHHHh-----ccCCCCCceeEEeeccc
Confidence 3678888888999999 6777765 21 11 22222222221 12457999999998764
Q ss_pred c
Q 026137 112 A 112 (243)
Q Consensus 112 ~ 112 (243)
.
T Consensus 274 A 274 (329)
T KOG1255|consen 274 A 274 (329)
T ss_pred C
Confidence 3
No 255
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=21.30 E-value=2.8e+02 Score=23.98 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCCEEEEEecCCCccccC
Q 026137 33 SILSAIAQAKAEATPGSAFITTSHGKFFSNG 63 (243)
Q Consensus 33 ~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G 63 (243)
.+--++-.--.+|+.+ ||+++|.|..|..|
T Consensus 75 alpaAiGaklA~pd~~-VV~i~GDG~~~~mg 104 (301)
T PRK05778 75 AIAFATGAKLANPDLE-VIVVGGDGDLASIG 104 (301)
T ss_pred HHHHHHHHHHHCCCCc-EEEEeCccHHHhcc
Confidence 3444444444467878 99999988766554
No 256
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=21.29 E-value=2.8e+02 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++... ... +|++|.
T Consensus 170 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-g~t-ii~vsH 207 (224)
T TIGR02324 170 ILLLDEP----TASLDAANRQVVVELIAEAKAR-GAA-LIGIFH 207 (224)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHhc-CCE-EEEEeC
Confidence 4567776 5899999999999999998653 443 555554
No 257
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=21.14 E-value=2.5e+02 Score=23.62 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecC
Q 026137 11 FVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSH 56 (243)
Q Consensus 11 ~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~ 56 (243)
-.+-|+.| .+.+|......+.+.+.++.++.... +|++|..
T Consensus 174 ~lllLDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-viiisH~ 214 (272)
T PRK13547 174 RYLLLDEP----TAALDLAHQHRLLDTVRRLARDWNLG-VLAIVHD 214 (272)
T ss_pred CEEEEcCc----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEECC
Confidence 34667877 58899999999999999987654443 5666553
No 258
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=21.13 E-value=3.1e+02 Score=21.17 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=27.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++... ... +|++|.
T Consensus 125 llllDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh 162 (182)
T cd03215 125 VLILDEP----TRGVDVGAKAEIYRLIRELADA-GKA-VLLISS 162 (182)
T ss_pred EEEECCC----CcCCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5889999999999999998654 333 444443
No 259
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=21.11 E-value=2.4e+02 Score=23.66 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=29.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......|.+.+.++.++.... +|++|.
T Consensus 165 llllDEP----t~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH 203 (280)
T PRK13633 165 CIIFDEP----TAMLDPSGRREVVNTIKELNKKYGIT-IILITH 203 (280)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4567776 58899999999999999997644444 555554
No 260
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=21.09 E-value=1.9e+02 Score=24.76 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=11.9
Q ss_pred CCCcEEEEECCccc
Q 026137 99 LPMPTVAAVNGHAA 112 (243)
Q Consensus 99 ~~kp~Ia~v~G~~~ 112 (243)
..||+|+..-|..-
T Consensus 224 ~~KPVV~lk~Grs~ 237 (286)
T TIGR01019 224 MSKPVVGFIAGATA 237 (286)
T ss_pred CCCCEEEEEecCCC
Confidence 68999999988864
No 261
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=21.08 E-value=2.7e+02 Score=22.61 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 151 llllDEP----~~~LD~~~~~~~~~~l~~~~~~~~~t-vli~sH 189 (237)
T TIGR00968 151 VLLLDEP----FGALDAKVRKELRSWLRKLHDEVHVT-TVFVTH 189 (237)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeC
Confidence 4567776 58899999999999999987643433 555554
No 262
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.03 E-value=1.6e+02 Score=24.30 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhcCC--CcEEEEECCccchhHHHHHHhcCE
Q 026137 84 YMFKSFRPLVAAMMDLP--MPTVAAVNGHAAAAGFILALSHDY 124 (243)
Q Consensus 84 ~~~~~~~~l~~~l~~~~--kp~Ia~v~G~~~G~G~~lal~~D~ 124 (243)
.........+..+...| .+.=..+-|+|+||++.+.+++..
T Consensus 91 ~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~ 133 (236)
T COG0412 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRA 133 (236)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhccc
Confidence 33445555666666666 333244679999999999999987
No 263
>PRK13032 chemotaxis-inhibiting protein CHIPS; Reviewed
Probab=20.97 E-value=3.3e+02 Score=19.58 Aligned_cols=54 Identities=13% Similarity=0.215 Sum_probs=36.0
Q ss_pred CceeeeeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCC
Q 026137 1 MCTSEKHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHGK 58 (243)
Q Consensus 1 ~i~~~~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~ 58 (243)
|+.+....|..++.+|.|- ....-+.+++..+....-- ..-++-. .-||.|.|+
T Consensus 90 mviltenkgyytvylntpl--aedrknvellgkmyktyff-kkgesks-syvingpgk 143 (149)
T PRK13032 90 MVILTENKGYYTVYLNTPL--AEDRKNVELLGKMYKTYFF-KKGESKS-SYVINGPGK 143 (149)
T ss_pred eEEEecCCceEEEEecCcc--hhhhhhHHHHHHHHHHHhh-hcCCccc-ceEEcCCCc
Confidence 5667777899999999996 5566677777776655422 2222323 678888764
No 264
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=20.89 E-value=3.1e+02 Score=21.44 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+ .... +|++|.
T Consensus 110 llLlDEP----t~~LD~~~~~~l~~~l~~~~~-~g~t-vIivSH 147 (176)
T cd03238 110 LFILDEP----STGLHQQDINQLLEVIKGLID-LGNT-VILIEH 147 (176)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHh-CCCE-EEEEeC
Confidence 4567776 588999999999999999865 3433 566655
No 265
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=20.87 E-value=1.2e+02 Score=23.95 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEECCcc
Q 026137 86 FKSFRPLVAAMMDLPMPTVAAVNGHA 111 (243)
Q Consensus 86 ~~~~~~l~~~l~~~~kp~Ia~v~G~~ 111 (243)
...|.+.+..+..++||+||.+|-..
T Consensus 116 s~~f~~~ve~vl~~~kpliatlHrrs 141 (179)
T COG1618 116 SKKFREAVEEVLKSGKPLIATLHRRS 141 (179)
T ss_pred cHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 35677888889999999999998653
No 266
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.74 E-value=2.8e+02 Score=22.46 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|....+.+.+.+.++..+.... +|++|.
T Consensus 150 llllDEP----t~gLD~~~~~~l~~~l~~~~~~~~~t-ili~tH 188 (235)
T cd03299 150 ILLLDEP----FSALDVRTKEKLREELKKIRKEFGVT-VLHVTH 188 (235)
T ss_pred EEEECCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4567876 58899999999999999987654444 555554
No 267
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=20.68 E-value=3e+02 Score=21.60 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=28.2
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+. ... +|++|.
T Consensus 132 illlDEP----~~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sh 169 (194)
T cd03213 132 LLFLDEP----TSGLDSSSALQVMSLLRRLADT-GRT-IICSIH 169 (194)
T ss_pred EEEEeCC----CcCCCHHHHHHHHHHHHHHHhC-CCE-EEEEec
Confidence 4567876 5899999999999999998654 333 455554
No 268
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.60 E-value=3e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.105 Sum_probs=28.1
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.....++.+.|.++.+. ... +|++|.
T Consensus 148 llllDEP----t~~LD~~~~~~l~~~l~~~~~~-~~t-iii~sH 185 (207)
T PRK13539 148 IWILDEP----TAALDAAAVALFAELIRAHLAQ-GGI-VIAATH 185 (207)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHC-CCE-EEEEeC
Confidence 4567776 5889999999999999987654 433 555554
No 269
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=20.52 E-value=2.3e+02 Score=24.20 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCccccCC
Q 026137 32 DSILSAIAQAKAEATPGSAFITTSHGKFFSNGF 64 (243)
Q Consensus 32 ~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~ 64 (243)
..+.-++-.-..+|+.+ ||+++|.|..|..|+
T Consensus 63 ~alp~A~GaklA~Pd~~-VV~i~GDG~~f~ig~ 94 (279)
T PRK11866 63 RVLPIATGVKWANPKLT-VIGYGGDGDGYGIGL 94 (279)
T ss_pred cHHHHHHHHHHHCCCCc-EEEEECChHHHHccH
Confidence 33444444333467888 999999887777664
No 270
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=20.44 E-value=3e+02 Score=21.77 Aligned_cols=38 Identities=13% Similarity=0.221 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.++ ... +|++|.
T Consensus 157 llllDEP----t~~LD~~~~~~~~~~l~~~~~~-~~t-iiivtH 194 (214)
T cd03292 157 ILIADEP----TGNLDPDTTWEIMNLLKKINKA-GTT-VVVATH 194 (214)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHc-CCE-EEEEeC
Confidence 4567776 5889999999999999998654 433 555554
No 271
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=20.42 E-value=3.3e+02 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.068 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 92 lllLDEP----ts~LD~~~~~~l~~~l~~~~~~~~~t-iiivsH 130 (177)
T cd03222 92 FYLFDEP----SAYLDIEQRLNAARAIRRLSEEGKKT-ALVVEH 130 (177)
T ss_pred EEEEECC----cccCCHHHHHHHHHHHHHHHHcCCCE-EEEEEC
Confidence 4566776 58899999999999999987553333 556555
No 272
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=20.35 E-value=2.9e+02 Score=22.11 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=28.8
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|.+...++.+.++++..+.... +|++|.
T Consensus 162 illlDEP----~~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~sh 200 (220)
T TIGR02982 162 LVLADEP----TAALDSKSGRDVVELMQKLAREQGCT-ILIVTH 200 (220)
T ss_pred EEEEeCC----CCcCCHHHHHHHHHHHHHHHHHcCCE-EEEEeC
Confidence 4567876 58899999999999999987644433 455544
No 273
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=20.35 E-value=2.7e+02 Score=22.88 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++.++.... +|++|.
T Consensus 161 lLlLDEP----t~~LD~~~~~~l~~~L~~~~~~~g~t-il~~sH 199 (254)
T PRK10418 161 FIIADEP----TTDLDVVAQARILDLLESIVQKRALG-MLLVTH 199 (254)
T ss_pred EEEEeCC----CcccCHHHHHHHHHHHHHHHHhcCcE-EEEEec
Confidence 4677876 48899999999999999986654444 566655
No 274
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.34 E-value=2.5e+02 Score=23.67 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=28.9
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-|+.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 171 lLlLDEP----t~~LD~~~~~~l~~~l~~~~~~~~~t-iiiisH 209 (289)
T PRK13645 171 TLVLDEP----TGGLDPKGEEDFINLFERLNKEYKKR-IIMVTH 209 (289)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEec
Confidence 4567876 58999999999999999987643433 555554
No 275
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=20.33 E-value=1.1e+02 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.5
Q ss_pred HHHHHHhcCCCcEEEEECCccc
Q 026137 91 PLVAAMMDLPMPTVAAVNGHAA 112 (243)
Q Consensus 91 ~l~~~l~~~~kp~Ia~v~G~~~ 112 (243)
..+..+..+|-.||..+||.++
T Consensus 17 ~~IE~ie~~PDttItLinGkky 38 (67)
T COG1582 17 HHIETIEAFPDTTITLINGKKY 38 (67)
T ss_pred HHhhhhhccCCcEEEEEcCcEE
Confidence 4566788999999999999874
No 276
>PTZ00346 histone deacetylase; Provisional
Probab=20.20 E-value=3.2e+02 Score=25.06 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCccccCCChhhHHHcCCCcchHHHHHHHHHHHHHHHHHHhcCCCcEEE
Q 026137 26 LGPSAIDSILSAIAQAKAEATPGSAFITTSHGKFFSNGFDLAWAQAAGSRTGARERVHYMFKSFRPLVAAMMDLPMPTVA 105 (243)
Q Consensus 26 l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g~~F~~G~D~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Ia 105 (243)
=+.+.+..|.+.+..+-..-.+. +||++. |.|.-.-.... .+.-..+.+..+.+.+..+..|++.
T Consensus 248 ~D~~Yl~~f~~ii~p~l~~F~Pd-lIvvsa-------G~Da~~~DpLg-------~l~LT~~g~~~~~~~l~~~~~plv~ 312 (429)
T PTZ00346 248 TDFYYLGLFEHALHSIVRRYSPD-AIVLQC-------GADSLAGDRLG-------LLNLSSFGHGQCVQAVRDLGIPMLA 312 (429)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCC-EEEEEC-------CccCCCCCCCC-------CceeCHHHHHHHHHHHHhcCCCEEE
Confidence 34566677777776654443444 566543 33332111100 0001122334456666677889988
Q ss_pred EEC
Q 026137 106 AVN 108 (243)
Q Consensus 106 ~v~ 108 (243)
+..
T Consensus 313 vle 315 (429)
T PTZ00346 313 LGG 315 (429)
T ss_pred EeC
Confidence 775
No 277
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=20.20 E-value=2.7e+02 Score=23.23 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=29.3
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++.+..... +|++|.
T Consensus 172 lllLDEP----t~~LD~~~~~~~~~~l~~~~~~~~~t-iiivsH 210 (268)
T PRK10419 172 LLILDEA----VSNLDLVLQAGVIRLLKKLQQQFGTA-CLFITH 210 (268)
T ss_pred EEEEeCC----CcccCHHHHHHHHHHHHHHHHHcCcE-EEEEEC
Confidence 4567776 58899999999999999987643444 566655
No 278
>PRK13317 pantothenate kinase; Provisional
Probab=20.17 E-value=5.5e+02 Score=21.85 Aligned_cols=15 Identities=7% Similarity=-0.186 Sum_probs=10.6
Q ss_pred hcCCCCEEEEEecCCC
Q 026137 43 AEATPGSAFITTSHGK 58 (243)
Q Consensus 43 ~~~~~~~~vvl~g~g~ 58 (243)
...++. .+.+||.|.
T Consensus 44 ~~~~~~-~i~~TG~g~ 58 (277)
T PRK13317 44 NLQDIE-KICLTGGKA 58 (277)
T ss_pred ccCCce-EEEEECcch
Confidence 334566 799999873
No 279
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=20.13 E-value=4.9e+02 Score=22.27 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=22.6
Q ss_pred eeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 6 KHGDVFVLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 6 ~~~~v~~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
.++++...++.+++ .+ ++++-|.+..... ..+. .+.+||.|
T Consensus 19 ~~~~~~f~~~~~~~---~~----~~~~~l~~~~~~~---~~~~-~i~~TGgG 59 (279)
T TIGR00555 19 PKGRRKFKTFETTN---ID----KFIEWLKNQIHRH---SRIT-TLCATGGG 59 (279)
T ss_pred CCCcEEEEEeeccc---HH----HHHHHHHHHHHhh---cCce-EEEEECCc
Confidence 45667777777662 22 3333333333322 2345 78899876
No 280
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=20.12 E-value=2.9e+02 Score=22.31 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++..+.... +|++|.
T Consensus 150 lllLDEP----~~gLD~~~~~~~~~~l~~~~~~~~~t-iii~sH 188 (232)
T PRK10771 150 ILLLDEP----FSALDPALRQEMLTLVSQVCQERQLT-LLMVSH 188 (232)
T ss_pred EEEEeCC----cccCCHHHHHHHHHHHHHHHHhcCCE-EEEEEC
Confidence 4567776 58899999999999999986543433 555554
No 281
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=20.06 E-value=2e+02 Score=24.04 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEecCC
Q 026137 23 EHRLGPSAIDSILSAIAQAKAEATPGSAFITTSHG 57 (243)
Q Consensus 23 ~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g~g 57 (243)
.+.++++.++.+.+.++++... .+. +-|+.|.|
T Consensus 22 ~~gid~~~i~~~a~~i~~~~~~-g~e-V~iVvGGG 54 (238)
T COG0528 22 GFGIDPEVLDRIANEIKELVDL-GVE-VAVVVGGG 54 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHHhc-CcE-EEEEECCC
Confidence 4569999999999999999975 567 65666655
No 282
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=20.06 E-value=2.9e+02 Score=22.70 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEec
Q 026137 12 VLTLTGSSNVDEHRLGPSAIDSILSAIAQAKAEATPGSAFITTS 55 (243)
Q Consensus 12 ~i~ln~p~~~~~N~l~~~~~~~l~~~l~~~~~~~~~~~~vvl~g 55 (243)
.+-++.| .+.+|......+.+.+.++... ... +|++|.
T Consensus 159 llllDEP----~~~LD~~~~~~l~~~l~~l~~~-~~t-iii~tH 196 (255)
T PRK11231 159 VVLLDEP----TTYLDINHQVELMRLMRELNTQ-GKT-VVTVLH 196 (255)
T ss_pred EEEEcCC----cccCCHHHHHHHHHHHHHHHHC-CCE-EEEEEC
Confidence 4567776 5889999999999999998654 433 556655
Done!