BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026138
         (243 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P19137|LAMA1_MOUSE Laminin subunit alpha-1 OS=Mus musculus GN=Lama1 PE=1 SV=1
          Length = 3084

 Score = 36.6 bits (83), Expect = 0.17,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 17/110 (15%)

Query: 125  SEEAMFVRAE--KNVNELNLSGELMKKESKKLLERAALAEKEMI------RGET----EL 172
            +EEA  + A+  K  N+ +L  E +    K +L+R++   KE +      +G T    EL
Sbjct: 1921 TEEAEMLAADAHKTANKTDLISESLASRGKAVLQRSSRFLKESVGTRRKQQGITMKLDEL 1980

Query: 173  KNAGNQVQRLAKQVYKVETQAADLMEGLREIPG--REALKLRAEVASMAS 220
            KN  +Q Q   + V  +  QA D +  LRE PG  RE  +   E+A+ A+
Sbjct: 1981 KNLTSQFQ---ESVDNITKQANDSLAMLRESPGGMREKGRKARELAAAAN 2027


>sp|O50156|ATPD_STREI ATP synthase subunit delta OS=Streptococcus equinus GN=atpH PE=3
           SV=1
          Length = 178

 Score = 32.0 bits (71), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 30  DLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKV-----KD 84
           D   S++ S+D  ++  R  Q +SS Y+    + +L      Q   +AF   +     KD
Sbjct: 47  DFLSSLVVSRDEKVKLVRLLQESSSVYMNNFLEVIL------QNEREAFLKAILEGVQKD 100

Query: 85  ELVSAREHP-AAATGVALT 102
            +++  +H     T VALT
Sbjct: 101 FVIATNQHDIVVTTAVALT 119


>sp|Q7Z7L1|SLN11_HUMAN Schlafen family member 11 OS=Homo sapiens GN=SLFN11 PE=1 SV=2
          Length = 901

 Score = 32.0 bits (71), Expect = 3.8,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 136 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAD 195
           NV E+ L  E  KK  K  ++R    E+ M R    L N+G  V R+AK+V        D
Sbjct: 20  NVGEVTLGEENRKKLQK--IQRDQEKERVM-RAACALLNSGGGVIRMAKKVEHPVEMGLD 76

Query: 196 LMEGLREI 203
           L + LRE+
Sbjct: 77  LEQSLREL 84


>sp|Q91ZU6|DYST_MOUSE Dystonin OS=Mus musculus GN=Dst PE=1 SV=1
          Length = 7389

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 169  ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAM 228
            ET+L+  G+  Q   ++++   T+  D ++G+  + GR+A  LR + A M + LK+  A+
Sbjct: 5093 ETKLQGLGH-FQNTIREMFSQFTECDDELDGMAPV-GRDAETLRKQKACMQTFLKKLEAL 5150

Query: 229  M 229
            M
Sbjct: 5151 M 5151


>sp|Q9P225|DYH2_HUMAN Dynein heavy chain 2, axonemal OS=Homo sapiens GN=DNAH2 PE=2 SV=3
          Length = 4427

 Score = 31.6 bits (70), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 13/140 (9%)

Query: 111  PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET 170
            P+R        +LR ++A    A++ + E+    E++KK+  +      LA+KE +R ++
Sbjct: 3215 PKRIRMNAALAQLREKQAALAEAQEKLREVAEKLEMLKKQYDE-----KLAQKEELRKKS 3269

Query: 171  E-----LKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ 225
            E     L+ AG  V  LA +  + E     L E L  + G + L   A ++ M   L   
Sbjct: 3270 EEMELKLERAGMLVSGLAGEKARWEETVQGLEEDLGYLVG-DCLLAAAFLSYMGPFLTNY 3328

Query: 226  RAMMDKQIM--KISELGVSV 243
            R  +  QI   KI EL V  
Sbjct: 3329 RDEIVNQIWIGKIWELQVPC 3348


>sp|Q9US51|MTF1_SCHPO Mitochondrial transcription factor 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=mtf1 PE=3 SV=1
          Length = 366

 Score = 31.2 bits (69), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 48/197 (24%), Positives = 75/197 (38%), Gaps = 32/197 (16%)

Query: 11  VAAAPAITTRTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQ 70
           +A  P +TT +            +  Q K   +  +R         L TL D  +  V Q
Sbjct: 67  MAPGPGVTTTS----------LFNYFQPKSHVVLESREVFSKPLQKLCTLSDGRIKWVHQ 116

Query: 71  ----YQTYEDAFFSKVKDELVSAREHPAAATGVAL---------TAGLLFMRGPRRFL-- 115
               +QTYED + SKV D  +   E    +    L          AGLLF+     FL  
Sbjct: 117 DGYYWQTYEDVYVSKVLDPRIQTEEEQKLSPHRELLFFAHLPHGYAGLLFVSQILDFLSA 176

Query: 116 --FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRG-ETEL 172
             +   FGR+R    +++     V  L   G    K SK  + R A  +  ++   E+ L
Sbjct: 177 RDWLGIFGRVRV--LLWLPCSPTVTLLGSRG--FSKRSKTSVFREAFTDSRVLAASESTL 232

Query: 173 KNAGNQVQRLAKQVYKV 189
           +       + AK+ Y++
Sbjct: 233 QKLCMGYSKEAKENYQI 249


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.127    0.335 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,365,757
Number of Sequences: 539616
Number of extensions: 2581044
Number of successful extensions: 11989
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 11790
Number of HSP's gapped (non-prelim): 344
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)