Query 026138
Match_columns 243
No_of_seqs 35 out of 37
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 04:13:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026138.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026138hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05957 DUF883: Bacterial pro 97.3 0.0023 5E-08 49.1 9.2 73 28-107 11-87 (94)
2 PRK10404 hypothetical protein; 96.5 0.019 4.2E-07 45.9 8.6 77 24-107 14-94 (101)
3 PRK10132 hypothetical protein; 95.6 0.085 1.8E-06 42.8 8.0 76 24-107 21-100 (108)
4 COG4575 ElaB Uncharacterized c 95.6 0.038 8.3E-07 45.1 6.0 77 24-107 17-97 (104)
5 PF04156 IncA: IncA protein; 95.4 1.4 3E-05 37.0 17.4 133 93-233 38-178 (191)
6 PRK11637 AmiB activator; Provi 94.6 2 4.4E-05 40.9 15.7 94 132-240 44-137 (428)
7 PF06008 Laminin_I: Laminin Do 94.0 2.4 5.2E-05 37.9 14.0 118 107-224 15-141 (264)
8 COG1579 Zn-ribbon protein, pos 93.7 2.1 4.7E-05 39.3 13.2 123 116-241 29-159 (239)
9 PF11559 ADIP: Afadin- and alp 86.2 17 0.00037 29.8 11.4 58 129-186 53-110 (151)
10 PRK15178 Vi polysaccharide exp 85.7 17 0.00037 36.1 12.6 104 127-230 222-338 (434)
11 COG4942 Membrane-bound metallo 85.6 33 0.00072 34.2 14.5 78 122-207 33-110 (420)
12 PF00261 Tropomyosin: Tropomyo 85.6 26 0.00055 31.2 14.2 89 128-216 106-195 (237)
13 PRK14160 heat shock protein Gr 85.2 22 0.00047 32.2 12.0 75 125-206 51-127 (211)
14 PRK14161 heat shock protein Gr 84.6 23 0.0005 31.0 11.7 78 124-206 8-85 (178)
15 PRK11637 AmiB activator; Provi 84.4 39 0.00085 32.3 14.9 63 128-190 75-137 (428)
16 PRK09039 hypothetical protein; 82.7 12 0.00027 35.3 9.9 76 121-196 123-199 (343)
17 PF05957 DUF883: Bacterial pro 82.4 16 0.00035 27.9 8.8 49 59-110 46-94 (94)
18 PRK06569 F0F1 ATP synthase sub 77.9 41 0.00088 29.1 10.7 16 108-123 24-39 (155)
19 PF10186 Atg14: UV radiation r 77.7 48 0.001 29.0 15.3 32 208-239 128-159 (302)
20 PRK14140 heat shock protein Gr 75.1 49 0.0011 29.5 10.7 52 153-204 48-101 (191)
21 PRK04654 sec-independent trans 74.2 31 0.00068 31.6 9.4 79 105-184 16-96 (214)
22 TIGR01843 type_I_hlyD type I s 73.6 73 0.0016 29.1 13.5 7 157-163 173-179 (423)
23 TIGR01843 type_I_hlyD type I s 68.9 94 0.002 28.4 14.3 30 161-190 201-230 (423)
24 PF05667 DUF812: Protein of un 68.9 1.5E+02 0.0032 30.7 14.6 107 127-233 400-511 (594)
25 PF04632 FUSC: Fusaric acid re 68.6 89 0.0019 30.7 11.9 108 95-206 137-245 (650)
26 PF04156 IncA: IncA protein; 68.5 70 0.0015 26.8 14.7 70 121-190 81-150 (191)
27 PRK14148 heat shock protein Gr 66.6 91 0.002 27.9 10.5 65 142-206 40-106 (195)
28 PRK04863 mukB cell division pr 66.5 2.2E+02 0.0047 32.7 15.5 101 102-203 271-381 (1486)
29 PRK14139 heat shock protein Gr 66.5 94 0.002 27.5 10.5 102 132-242 29-130 (185)
30 KOG0250 DNA repair protein RAD 65.7 1.6E+02 0.0034 32.9 13.8 67 139-205 362-429 (1074)
31 KOG0996 Structural maintenance 65.6 1.9E+02 0.0041 32.8 14.5 101 133-233 463-583 (1293)
32 PF10805 DUF2730: Protein of u 65.6 68 0.0015 25.6 10.2 69 88-159 4-75 (106)
33 PRK14154 heat shock protein Gr 65.5 97 0.0021 28.1 10.6 57 150-206 60-118 (208)
34 KOG2629 Peroxisomal membrane a 65.4 1.3E+02 0.0029 28.9 12.0 73 105-177 98-171 (300)
35 KOG0977 Nuclear envelope prote 65.2 1.6E+02 0.0035 30.4 13.2 97 129-233 100-196 (546)
36 PF07888 CALCOCO1: Calcium bin 63.4 1.9E+02 0.0041 29.9 13.4 65 167-231 280-357 (546)
37 PRK02224 chromosome segregatio 63.2 1.9E+02 0.0041 29.9 14.6 69 138-206 345-413 (880)
38 PF05701 WEMBL: Weak chloropla 62.9 1.7E+02 0.0037 29.3 12.9 95 136-230 310-410 (522)
39 PRK14163 heat shock protein Gr 62.5 1.2E+02 0.0027 27.5 10.7 65 137-206 42-106 (214)
40 PF12777 MT: Microtubule-bindi 62.0 82 0.0018 29.5 9.9 77 93-169 186-262 (344)
41 KOG1962 B-cell receptor-associ 61.4 1.3E+02 0.0029 27.5 13.3 91 120-216 120-210 (216)
42 PF06103 DUF948: Bacterial pro 60.0 72 0.0016 24.0 11.1 63 127-189 25-87 (90)
43 PF10168 Nup88: Nuclear pore c 59.4 2.4E+02 0.0052 29.8 17.0 158 74-237 501-663 (717)
44 PF09769 ApoO: Apolipoprotein 59.3 35 0.00077 28.4 6.3 69 49-121 50-127 (158)
45 TIGR03185 DNA_S_dndD DNA sulfu 59.0 2.1E+02 0.0046 29.1 16.1 79 95-175 171-249 (650)
46 PRK08476 F0F1 ATP synthase sub 58.8 1E+02 0.0022 25.4 14.4 55 102-156 15-69 (141)
47 PF10146 zf-C4H2: Zinc finger- 58.0 1.5E+02 0.0033 27.0 11.0 51 114-164 11-61 (230)
48 PF10805 DUF2730: Protein of u 57.8 69 0.0015 25.5 7.5 54 176-229 34-88 (106)
49 PRK08475 F0F1 ATP synthase sub 57.0 1.2E+02 0.0026 25.7 14.0 76 78-153 3-81 (167)
50 TIGR03185 DNA_S_dndD DNA sulfu 56.8 2.3E+02 0.005 28.8 13.6 31 208-238 485-516 (650)
51 PRK14145 heat shock protein Gr 56.7 1.5E+02 0.0032 26.6 10.8 94 144-242 47-142 (196)
52 PRK14143 heat shock protein Gr 56.2 1.7E+02 0.0036 27.0 11.1 64 136-206 68-133 (238)
53 COG1579 Zn-ribbon protein, pos 56.0 98 0.0021 28.6 9.1 36 130-165 47-82 (239)
54 PF01025 GrpE: GrpE; InterPro 55.9 23 0.0005 29.1 4.6 95 139-241 15-110 (165)
55 PF12718 Tropomyosin_1: Tropom 55.9 1.2E+02 0.0027 25.4 10.0 70 127-196 27-120 (143)
56 PF06120 Phage_HK97_TLTM: Tail 55.5 1.9E+02 0.0042 27.6 20.6 180 24-205 33-225 (301)
57 PF12777 MT: Microtubule-bindi 55.5 46 0.00099 31.2 7.0 96 110-205 217-312 (344)
58 PRK14156 heat shock protein Gr 55.4 1.4E+02 0.0031 26.3 9.6 89 149-242 34-124 (177)
59 PF07926 TPR_MLP1_2: TPR/MLP1/ 55.3 1.1E+02 0.0025 24.8 15.1 98 130-235 12-109 (132)
60 PRK14162 heat shock protein Gr 55.2 1.6E+02 0.0034 26.4 11.2 64 136-206 40-105 (194)
61 PRK14146 heat shock protein Gr 54.7 1.7E+02 0.0036 26.5 10.3 60 147-206 59-120 (215)
62 PF10112 Halogen_Hydrol: 5-bro 54.6 82 0.0018 27.0 7.9 20 185-204 102-121 (199)
63 KOG0964 Structural maintenance 54.6 2E+02 0.0044 32.2 12.2 137 105-241 365-509 (1200)
64 CHL00118 atpG ATP synthase CF0 53.2 1.3E+02 0.0029 25.0 15.2 60 96-155 24-83 (156)
65 PRK06568 F0F1 ATP synthase sub 52.6 1.5E+02 0.0033 25.5 14.9 47 111-157 21-67 (154)
66 PRK14155 heat shock protein Gr 52.1 1.8E+02 0.0038 26.3 9.9 96 137-242 15-116 (208)
67 PRK00888 ftsB cell division pr 50.2 78 0.0017 25.3 6.7 27 130-156 36-62 (105)
68 PRK14474 F0F1 ATP synthase sub 49.0 2.1E+02 0.0045 26.0 15.9 35 96-130 7-41 (250)
69 COG3883 Uncharacterized protei 48.4 2.4E+02 0.0051 26.7 10.4 73 110-182 19-92 (265)
70 PRK00708 sec-independent trans 48.4 2.2E+02 0.0047 26.0 9.9 21 103-123 14-35 (209)
71 PF05700 BCAS2: Breast carcino 48.0 2E+02 0.0043 25.5 10.6 66 126-201 141-206 (221)
72 PF06818 Fez1: Fez1; InterPro 47.7 2.2E+02 0.0047 25.9 11.9 93 139-231 42-156 (202)
73 PF00038 Filament: Intermediat 46.7 2.2E+02 0.0047 25.6 11.9 84 147-230 193-279 (312)
74 PRK14471 F0F1 ATP synthase sub 46.7 1.7E+02 0.0037 24.3 15.4 53 102-154 16-68 (164)
75 PRK14158 heat shock protein Gr 46.2 2.2E+02 0.0047 25.5 10.9 62 145-206 43-106 (194)
76 PRK14151 heat shock protein Gr 46.2 2E+02 0.0044 25.1 10.2 96 137-242 22-121 (176)
77 KOG0243 Kinesin-like protein [ 45.5 3.3E+02 0.0072 30.4 12.3 164 20-223 373-549 (1041)
78 PF14635 HHH_7: Helix-hairpin- 44.9 6.8 0.00015 31.8 -0.1 56 54-114 5-63 (104)
79 KOG3564 GTPase-activating prot 43.8 2.1E+02 0.0045 29.8 9.8 91 107-201 11-108 (604)
80 PHA02562 46 endonuclease subun 43.0 3.2E+02 0.0069 26.4 13.3 91 109-203 149-246 (562)
81 PRK14153 heat shock protein Gr 42.9 2.5E+02 0.0054 25.2 11.2 65 135-206 33-99 (194)
82 PF11932 DUF3450: Protein of u 42.9 2.4E+02 0.0053 25.1 11.3 7 202-208 121-127 (251)
83 PF12128 DUF3584: Protein of u 42.4 5.1E+02 0.011 28.6 14.6 31 49-79 505-535 (1201)
84 PF09969 DUF2203: Uncharacteri 41.4 1.4E+02 0.0031 24.5 7.1 30 214-243 44-73 (120)
85 smart00787 Spc7 Spc7 kinetocho 41.2 3.2E+02 0.0069 25.9 12.3 105 120-225 153-265 (312)
86 PF15456 Uds1: Up-regulated Du 41.0 88 0.0019 26.0 5.8 41 142-183 22-62 (124)
87 PF13997 YqjK: YqjK-like prote 40.8 31 0.00067 26.1 2.9 29 84-115 31-59 (73)
88 PF12128 DUF3584: Protein of u 40.0 5.5E+02 0.012 28.4 13.1 69 135-203 816-884 (1201)
89 PRK10476 multidrug resistance 39.3 3.1E+02 0.0066 25.2 10.4 52 131-182 117-171 (346)
90 PRK14147 heat shock protein Gr 38.5 2.7E+02 0.0058 24.3 10.2 60 140-206 23-84 (172)
91 PF12329 TMF_DNA_bd: TATA elem 37.4 1.8E+02 0.0039 21.9 9.2 70 133-202 3-72 (74)
92 PRK02224 chromosome segregatio 37.3 4.9E+02 0.011 27.0 15.1 28 49-77 143-170 (880)
93 PF14235 DUF4337: Domain of un 37.2 1E+02 0.0022 26.4 5.8 58 130-187 68-130 (157)
94 PRK10698 phage shock protein P 37.2 3.1E+02 0.0066 24.5 10.5 92 129-223 46-153 (222)
95 PF13815 Dzip-like_N: Iguana/D 37.0 2.2E+02 0.0047 22.8 8.1 54 129-182 60-113 (118)
96 PRK14473 F0F1 ATP synthase sub 36.9 2.4E+02 0.0053 23.3 15.5 53 102-154 16-68 (164)
97 PRK14150 heat shock protein Gr 36.9 3E+02 0.0065 24.3 10.4 45 162-206 58-104 (193)
98 PF06009 Laminin_II: Laminin D 36.5 12 0.00025 30.9 0.0 100 131-230 6-107 (138)
99 PRK13454 F0F1 ATP synthase sub 36.2 2.8E+02 0.0061 23.8 14.0 49 104-152 41-89 (181)
100 PRK11677 hypothetical protein; 36.1 1.3E+02 0.0027 25.6 6.1 34 127-160 35-68 (134)
101 PRK12704 phosphodiesterase; Pr 35.5 4.8E+02 0.011 26.4 16.8 27 212-238 123-149 (520)
102 TIGR03794 NHPM_micro_HlyD NHPM 35.4 3.9E+02 0.0085 25.3 12.0 36 195-230 216-251 (421)
103 PF04100 Vps53_N: Vps53-like, 35.3 2.5E+02 0.0054 27.1 8.7 71 121-195 12-82 (383)
104 PF14817 HAUS5: HAUS augmin-li 34.8 3E+02 0.0066 28.8 9.7 46 132-177 83-128 (632)
105 PF11382 DUF3186: Protein of u 34.8 1.5E+02 0.0032 27.7 6.9 56 94-162 11-66 (308)
106 PRK14475 F0F1 ATP synthase sub 34.7 2.8E+02 0.006 23.3 15.5 19 112-130 28-46 (167)
107 PF10186 Atg14: UV radiation r 34.6 3.1E+02 0.0068 23.9 12.7 47 127-173 62-108 (302)
108 PF08898 DUF1843: Domain of un 34.5 60 0.0013 23.9 3.4 31 127-157 20-53 (53)
109 PRK14149 heat shock protein Gr 34.5 3.4E+02 0.0074 24.3 9.1 84 157-242 51-136 (191)
110 PF06005 DUF904: Protein of un 33.7 2.1E+02 0.0046 21.7 9.8 49 128-180 4-52 (72)
111 PRK01156 chromosome segregatio 33.2 5.9E+02 0.013 26.6 15.3 78 121-198 629-709 (895)
112 PF09969 DUF2203: Uncharacteri 33.2 1.1E+02 0.0023 25.3 5.1 59 148-206 26-86 (120)
113 TIGR01010 BexC_CtrB_KpsE polys 32.4 4.1E+02 0.0089 24.6 14.4 86 140-227 168-263 (362)
114 PF01706 FliG_C: FliG C-termin 32.4 1.4E+02 0.0031 23.3 5.5 44 198-241 59-106 (110)
115 PF09730 BicD: Microtubule-ass 32.3 6.5E+02 0.014 27.0 11.7 74 127-203 358-431 (717)
116 PRK05431 seryl-tRNA synthetase 32.2 3.7E+02 0.0081 26.2 9.4 78 129-206 29-109 (425)
117 PRK03918 chromosome segregatio 32.2 5.8E+02 0.013 26.3 15.2 121 116-236 174-326 (880)
118 TIGR00606 rad50 rad50. This fa 32.1 7.5E+02 0.016 27.6 15.2 107 130-236 972-1080(1311)
119 TIGR02680 conserved hypothetic 31.8 8E+02 0.017 27.8 20.8 96 108-206 846-943 (1353)
120 PRK10698 phage shock protein P 31.6 3.8E+02 0.0082 24.0 12.3 100 129-235 18-117 (222)
121 TIGR02680 conserved hypothetic 31.5 8.1E+02 0.017 27.7 16.1 60 171-230 291-350 (1353)
122 PF11157 DUF2937: Protein of u 31.4 1.5E+02 0.0032 25.6 5.9 54 25-81 22-75 (167)
123 PF12072 DUF3552: Domain of un 31.2 3.6E+02 0.0077 23.5 17.7 77 95-178 8-86 (201)
124 KOG0976 Rho/Rac1-interacting s 31.2 8E+02 0.017 27.6 15.0 107 127-238 98-208 (1265)
125 PF10337 DUF2422: Protein of u 30.9 5E+02 0.011 25.1 12.1 98 94-191 199-314 (459)
126 PF08285 DPM3: Dolichol-phosph 30.6 33 0.00071 27.2 1.6 25 129-153 62-86 (91)
127 PF05557 MAD: Mitotic checkpoi 30.5 6.3E+02 0.014 26.1 13.4 98 133-230 501-630 (722)
128 PRK09841 cryptic autophosphory 30.5 6.3E+02 0.014 26.2 13.1 46 188-238 350-395 (726)
129 PHA02699 hypothetical protein; 30.3 5.9E+02 0.013 25.8 12.2 40 202-242 416-456 (466)
130 KOG0250 DNA repair protein RAD 30.3 8.4E+02 0.018 27.6 14.2 33 161-193 356-388 (1074)
131 PRK00888 ftsB cell division pr 30.1 1.9E+02 0.004 23.2 5.9 28 128-155 41-68 (105)
132 PRK14157 heat shock protein Gr 30.1 4.4E+02 0.0096 24.3 9.2 43 164-206 99-143 (227)
133 PF02646 RmuC: RmuC family; I 30.1 4E+02 0.0087 24.7 8.9 55 147-201 11-65 (304)
134 PF12761 End3: Actin cytoskele 30.0 2.4E+02 0.0052 25.5 7.1 38 147-184 101-142 (195)
135 KOG0964 Structural maintenance 29.9 8.7E+02 0.019 27.6 14.3 153 70-223 609-802 (1200)
136 TIGR01069 mutS2 MutS2 family p 29.6 7.1E+02 0.015 26.5 12.1 14 189-202 577-590 (771)
137 PF07464 ApoLp-III: Apolipopho 29.4 3.7E+02 0.0081 23.2 8.7 117 29-189 6-136 (155)
138 TIGR03321 alt_F1F0_F0_B altern 29.3 4.1E+02 0.009 23.7 16.0 53 101-153 12-64 (246)
139 KOG1003 Actin filament-coating 29.3 3.4E+02 0.0074 24.9 8.0 32 133-164 2-33 (205)
140 KOG4154 Arginine-rich protein 29.2 46 0.00099 29.3 2.4 31 94-124 7-43 (178)
141 PF10174 Cast: RIM-binding pro 28.6 6.8E+02 0.015 27.0 11.2 106 130-238 55-163 (775)
142 COG1196 Smc Chromosome segrega 28.6 8.2E+02 0.018 26.9 14.9 45 121-165 674-718 (1163)
143 PRK07352 F0F1 ATP synthase sub 28.5 3.6E+02 0.0077 22.7 16.3 39 106-144 31-69 (174)
144 cd00632 Prefoldin_beta Prefold 28.4 2.8E+02 0.0062 21.5 11.1 35 55-89 6-42 (105)
145 PF04698 Rab_eff_C: Rab effect 28.4 1.4E+02 0.003 31.9 6.0 73 171-243 541-627 (714)
146 KOG0996 Structural maintenance 28.3 9.7E+02 0.021 27.6 13.4 85 155-240 527-613 (1293)
147 PRK14144 heat shock protein Gr 28.2 4.5E+02 0.0097 23.7 10.2 62 138-206 48-111 (199)
148 PRK07353 F0F1 ATP synthase sub 28.0 3.1E+02 0.0068 21.8 15.3 56 97-152 8-63 (140)
149 PF15136 UPF0449: Uncharacteri 27.5 1.2E+02 0.0025 24.8 4.3 31 155-185 66-96 (97)
150 KOG1003 Actin filament-coating 27.5 4.9E+02 0.011 23.9 10.2 74 129-202 75-155 (205)
151 PRK14141 heat shock protein Gr 27.2 4.7E+02 0.01 23.7 10.1 53 154-206 43-97 (209)
152 TIGR02449 conserved hypothetic 26.9 2.8E+02 0.0061 21.0 8.7 60 131-190 3-62 (65)
153 PF05278 PEARLI-4: Arabidopsis 26.7 5.6E+02 0.012 24.3 12.9 91 133-236 164-254 (269)
154 PF08717 nsp8: nsp8 replicase; 26.6 2.1E+02 0.0046 26.1 6.2 59 129-192 14-76 (199)
155 PF10046 BLOC1_2: Biogenesis o 26.0 3.2E+02 0.007 21.3 10.4 71 127-201 27-97 (99)
156 PF11559 ADIP: Afadin- and alp 25.9 3.7E+02 0.008 22.0 10.7 49 135-183 73-121 (151)
157 PF12732 YtxH: YtxH-like prote 25.8 2.7E+02 0.0058 20.4 8.8 20 96-115 8-27 (74)
158 PF00038 Filament: Intermediat 25.6 4.9E+02 0.011 23.3 12.6 111 116-226 167-282 (312)
159 PRK15422 septal ring assembly 25.3 3.5E+02 0.0075 21.5 7.6 55 128-182 4-61 (79)
160 TIGR03319 YmdA_YtgF conserved 25.1 7.3E+02 0.016 25.1 16.8 29 210-238 115-143 (514)
161 TIGR01069 mutS2 MutS2 family p 24.8 8.6E+02 0.019 25.9 14.3 24 122-145 491-514 (771)
162 PF02403 Seryl_tRNA_N: Seryl-t 24.6 3.3E+02 0.0071 20.9 8.4 31 130-160 31-61 (108)
163 PF07246 Phlebovirus_NSM: Phle 24.6 2.8E+02 0.006 26.3 6.8 54 118-175 189-242 (264)
164 PF04977 DivIC: Septum formati 24.6 1.9E+02 0.0041 20.5 4.6 27 128-154 24-50 (80)
165 PF09730 BicD: Microtubule-ass 24.6 5.1E+02 0.011 27.7 9.4 81 123-210 15-95 (717)
166 KOG3875 Peroxisomal biogenesis 24.5 4.1E+02 0.0088 26.3 8.0 23 102-125 167-190 (362)
167 smart00435 TOPEUc DNA Topoisom 24.4 4.4E+02 0.0096 26.3 8.4 28 173-201 339-366 (391)
168 PF09006 Surfac_D-trimer: Lung 24.4 1.5E+02 0.0031 21.4 3.8 24 137-160 1-24 (46)
169 PF10146 zf-C4H2: Zinc finger- 24.4 5.5E+02 0.012 23.4 12.2 90 118-207 22-114 (230)
170 COG4026 Uncharacterized protei 24.2 6.3E+02 0.014 24.1 9.5 71 133-203 133-203 (290)
171 PF02185 HR1: Hr1 repeat; Int 24.1 2.4E+02 0.0053 20.4 5.2 30 129-158 34-63 (70)
172 COG4238 Murein lipoprotein [Ce 24.1 3.7E+02 0.0079 21.3 7.3 46 127-172 24-69 (78)
173 PF01920 Prefoldin_2: Prefoldi 24.0 3.1E+02 0.0067 20.4 8.4 91 55-164 5-98 (106)
174 KOG3501 Molecular chaperone Pr 23.9 4.4E+02 0.0095 22.2 7.2 42 124-165 63-104 (114)
175 PF06109 HlyE: Haemolysin E (H 23.9 5E+02 0.011 24.3 8.2 68 35-102 13-89 (299)
176 smart00502 BBC B-Box C-termina 23.7 3.1E+02 0.0068 20.4 11.4 86 129-227 8-93 (127)
177 KOG0994 Extracellular matrix g 23.6 1.2E+03 0.027 27.3 19.5 179 24-202 1554-1749(1758)
178 PF06717 DUF1202: Protein of u 23.4 1.6E+02 0.0035 28.4 5.1 45 127-171 137-181 (308)
179 PF08657 DASH_Spc34: DASH comp 23.3 2.4E+02 0.0051 26.2 6.1 36 132-167 177-212 (259)
180 PF02388 FemAB: FemAB family; 23.3 3.8E+02 0.0083 25.7 7.7 54 134-191 241-294 (406)
181 cd00890 Prefoldin Prefoldin is 23.3 3.5E+02 0.0077 20.8 6.4 41 126-166 85-125 (129)
182 PRK09841 cryptic autophosphory 23.3 8.5E+02 0.018 25.3 11.8 65 132-196 257-323 (726)
183 PRK11578 macrolide transporter 23.2 5.6E+02 0.012 23.7 8.6 23 145-167 109-131 (370)
184 PF10168 Nup88: Nuclear pore c 23.1 7.4E+02 0.016 26.3 10.2 96 130-229 602-708 (717)
185 PF02944 BESS: BESS motif; In 23.0 89 0.0019 20.4 2.4 27 194-220 9-35 (37)
186 PRK14159 heat shock protein Gr 22.9 5.3E+02 0.011 22.7 9.5 88 153-242 34-123 (176)
187 TIGR01010 BexC_CtrB_KpsE polys 22.8 6.2E+02 0.013 23.5 9.0 62 169-237 241-302 (362)
188 KOG3891 Secretory vesicle-asso 22.8 8E+02 0.017 24.7 12.2 113 39-154 52-176 (436)
189 KOG1174 Anaphase-promoting com 22.7 92 0.002 32.0 3.5 126 55-188 355-496 (564)
190 KOG0977 Nuclear envelope prote 22.4 9E+02 0.019 25.2 14.3 37 169-205 182-218 (546)
191 PRK12704 phosphodiesterase; Pr 22.4 8.2E+02 0.018 24.8 11.6 31 150-180 83-113 (520)
192 PF04588 HIG_1_N: Hypoxia indu 22.0 53 0.0011 23.3 1.3 18 90-107 2-19 (54)
193 PF13600 DUF4140: N-terminal d 21.7 2.2E+02 0.0047 21.8 4.7 32 134-165 69-100 (104)
194 TIGR00984 3a0801s03tim44 mitoc 21.6 4E+02 0.0088 26.3 7.5 23 134-156 7-29 (378)
195 KOG2307 Low density lipoprotei 21.3 9E+02 0.02 25.9 10.2 74 130-207 84-160 (705)
196 KOG0612 Rho-associated, coiled 21.3 1.2E+03 0.027 26.9 11.8 65 133-197 463-528 (1317)
197 TIGR03513 GldL_gliding gliding 21.2 6.3E+02 0.014 23.0 12.8 56 166-226 133-192 (202)
198 COG4942 Membrane-bound metallo 21.2 6.4E+02 0.014 25.4 8.9 72 121-192 38-109 (420)
199 PF03904 DUF334: Domain of unk 21.1 6.9E+02 0.015 23.4 12.7 94 125-224 33-138 (230)
200 cd07590 BAR_Bin3 The Bin/Amphi 21.1 6.3E+02 0.014 22.9 11.2 35 125-159 8-42 (225)
201 KOG0999 Microtubule-associated 21.1 4.5E+02 0.0098 28.0 8.0 79 124-209 89-167 (772)
202 PLN03223 Polycystin cation cha 21.0 2.1E+02 0.0045 33.2 6.0 54 144-197 1573-1629(1634)
203 PF12709 Kinetocho_Slk19: Cent 20.9 3.2E+02 0.0068 21.9 5.5 35 132-166 46-80 (87)
204 PRK11519 tyrosine kinase; Prov 20.7 9.5E+02 0.021 24.9 14.1 48 185-237 347-394 (719)
205 PRK11546 zraP zinc resistance 20.7 5.5E+02 0.012 22.1 8.5 32 208-242 91-122 (143)
206 PF06305 DUF1049: Protein of u 20.6 1.4E+02 0.003 21.0 3.2 9 98-106 29-37 (68)
207 PF06698 DUF1192: Protein of u 20.6 1.5E+02 0.0033 22.0 3.5 22 136-157 22-43 (59)
208 cd00584 Prefoldin_alpha Prefol 20.5 2.8E+02 0.0061 21.9 5.3 37 130-166 89-125 (129)
209 cd00089 HR1 Protein kinase C-r 20.1 1.8E+02 0.0038 21.3 3.7 28 129-156 43-70 (72)
210 PF13805 Pil1: Eisosome compon 20.1 6.4E+02 0.014 23.9 8.3 61 115-182 125-191 (271)
211 PF04728 LPP: Lipoprotein leuc 20.1 3.7E+02 0.0081 19.9 7.0 43 130-172 5-47 (56)
No 1
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=97.32 E-value=0.0023 Score=49.12 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=42.2
Q ss_pred HHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhcchhhHHHHHHH
Q 026138 28 VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGVALTA 103 (243)
Q Consensus 28 ~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv----~~A~~hP~~~~g~a~~a 103 (243)
+++++..+.+..|.+-+.+..+++.-...+.++++.+.+.. +.+-.+.++++ ..+++||+.+.|+|+++
T Consensus 11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~V~e~P~~svgiAagv 83 (94)
T PF05957_consen 11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAA-------DQAREQAREAAEQTEDYVRENPWQSVGIAAGV 83 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 34444444444444444444455544444544444444433 33444433333 47899999999999999
Q ss_pred hHhh
Q 026138 104 GLLF 107 (243)
Q Consensus 104 g~ll 107 (243)
|||+
T Consensus 84 G~ll 87 (94)
T PF05957_consen 84 GFLL 87 (94)
T ss_pred HHHH
Confidence 9986
No 2
>PRK10404 hypothetical protein; Provisional
Probab=96.54 E-value=0.019 Score=45.91 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHhhcchhhHHH
Q 026138 24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE----LVSAREHPAAATGV 99 (243)
Q Consensus 24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~g----v~~A~~hP~~~~g~ 99 (243)
...-++++..-+.++.|.+-+.+.++++.-...+..+++.+.+.. +.+..+.|+. -..+++||+-+.|+
T Consensus 14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~-------~~~~~~~k~aa~~td~yV~e~Pw~avGi 86 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQAS-------DSYYYRAKQAVYRADDYVHEKPWQGIGV 86 (101)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 445566677777777777777777777766666666665555444 4444444444 45889999999999
Q ss_pred HHHHhHhh
Q 026138 100 ALTAGLLF 107 (243)
Q Consensus 100 a~~ag~ll 107 (243)
++++|||+
T Consensus 87 aagvGlll 94 (101)
T PRK10404 87 GAAVGLVL 94 (101)
T ss_pred HHHHHHHH
Confidence 99999875
No 3
>PRK10132 hypothetical protein; Provisional
Probab=95.56 E-value=0.085 Score=42.83 Aligned_cols=76 Identities=14% Similarity=0.226 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHhhcchhhHHH
Q 026138 24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGV 99 (243)
Q Consensus 24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv----~~A~~hP~~~~g~ 99 (243)
.+.-+++++..+.++.+.+-+-+..+++.=...+...++. +...++. ..+.|+.+ ..+++||+.++|+
T Consensus 21 l~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~-------l~~~~~~-~~~~~~a~~~~~~~V~~~Pw~svgi 92 (108)
T PRK10132 21 VNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRAR-------MHGRTRV-QQAARDAVGCADTFVRERPWCSVGT 92 (108)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-------HhhhHHH-HHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 3344555555555555555555555554444444444443 3333442 23334444 3678899999999
Q ss_pred HHHHhHhh
Q 026138 100 ALTAGLLF 107 (243)
Q Consensus 100 a~~ag~ll 107 (243)
++++|||+
T Consensus 93 aagvG~ll 100 (108)
T PRK10132 93 AAAVGIFI 100 (108)
T ss_pred HHHHHHHH
Confidence 99988875
No 4
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.038 Score=45.14 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHhhcchhhHHH
Q 026138 24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGV 99 (243)
Q Consensus 24 ~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~----~A~~hP~~~~g~ 99 (243)
...-+|++..-+.++-+-|-+-+.+|+..--+-+.++++-+.+.. |.+....|+++. ++.+||+-++|+
T Consensus 17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~PWq~VGv 89 (104)
T COG4575 17 LQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENPWQGVGV 89 (104)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 334455555555566555666666677655555555555554443 666667666664 889999999999
Q ss_pred HHHHhHhh
Q 026138 100 ALTAGLLF 107 (243)
Q Consensus 100 a~~ag~ll 107 (243)
++++|||+
T Consensus 90 aAaVGlll 97 (104)
T COG4575 90 AAAVGLLL 97 (104)
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.39 E-value=1.4 Score=37.03 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=76.2
Q ss_pred chhhHHHHHHHhHhhccchhHHHHHHhhh-hhccHH-------HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 026138 93 PAAATGVALTAGLLFMRGPRRFLFRHTFG-RLRSEE-------AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (243)
Q Consensus 93 P~~~~g~a~~ag~lll~gpRrfL~r~Tlg-rf~SEE-------all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E 164 (243)
+.+.+++..++|++++..--.++...... ..+.+. .-+...+....++.+.++.+.+....+......-+++
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556677666655555433322 222211 2445555556666666666666666666666666666
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 165 MIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQI 233 (243)
Q Consensus 165 ~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i 233 (243)
+...+..++.....++.+-.....+++....|. .+-.+.+.++..+...++.-+..++.-.
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 178 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ--------KELQDSREEVQELRSQLERLQENLQQLE 178 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777777777666 4444455555555555554444433333
No 6
>PRK11637 AmiB activator; Provisional
Probab=94.65 E-value=2 Score=40.87 Aligned_cols=94 Identities=12% Similarity=0.170 Sum_probs=49.7
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL 211 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~L 211 (243)
..+.+.+++++.++.++++++.+.+.....+.++..=..+|..+..+|..+-..+-.++... ..+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei---------------~~l 108 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQI---------------DEL 108 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Confidence 34555555555555555555555555555555544444444444444444333333333332 345
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026138 212 RAEVASMASLLKRQRAMMDKQIMKISELG 240 (243)
Q Consensus 212 RaeVAs~as~lk~qR~aL~k~i~KIs~~G 240 (243)
..++..+-.++..++..|.+++.-+-..|
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55666666677777777776666655544
No 7
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.02 E-value=2.4 Score=37.92 Aligned_cols=118 Identities=17% Similarity=0.232 Sum_probs=93.6
Q ss_pred hccchhHHHH---------HHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Q 026138 107 FMRGPRRFLF---------RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN 177 (243)
Q Consensus 107 ll~gpRrfL~---------r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~ 177 (243)
.+|.|.+++| +.-.+.+..-...+...+..+..|...++.+.....+....+......-.+-+..-..-..
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~ 94 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQ 94 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999988 2333444445557888888888888888888888888888877777777777777777777
Q ss_pred HHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHH
Q 026138 178 QVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKR 224 (243)
Q Consensus 178 qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~ 224 (243)
.|+.+...|-.+-.++.+|=...-.+|+.+-.+...|+-.|..+++.
T Consensus 95 ~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 95 FIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888777777789999999999999999998854
No 8
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.70 E-value=2.1 Score=39.25 Aligned_cols=123 Identities=16% Similarity=0.268 Sum_probs=76.6
Q ss_pred HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh--HHHHHHHHHHHHHHHhhH
Q 026138 116 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQA 193 (243)
Q Consensus 116 ~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~a--g~qiq~l~ss~yK~E~~A 193 (243)
++..+-..+ +.+.++-..+..++..++.++++...++....-..+.+.+++.+|.++ -+++..|-..++..+.+.
T Consensus 29 ~~~~l~k~~---~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAK---AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 344444444 345555566666666666666666666666666666666666666332 245555555555555555
Q ss_pred HHHHHhhccCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 026138 194 ADLMEGLREIP------GREALKLRAEVASMASLLKRQRAMMDKQIMKISELGV 241 (243)
Q Consensus 194 ~gL~d~Lr~lP------sreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~GV 241 (243)
..|.|.|.++- ..+...++.++..+-..+...+..++.++.+|-+-|.
T Consensus 106 ~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~ 159 (239)
T COG1579 106 NSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQ 159 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555443 3356778888888888888888888888888876654
No 9
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.22 E-value=17 Score=29.79 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=46.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~ 186 (243)
.-.....+...+...++.+.+..++|.++....|.++.--..+.++...+++++....
T Consensus 53 ~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 53 QREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777788888888889999999999999988888888888888888775544
No 10
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=85.67 E-value=17 Score=36.10 Aligned_cols=104 Identities=15% Similarity=0.196 Sum_probs=69.3
Q ss_pred HHHHHHHHHhHHHHHHhH-----HhhHHHHHHHHHHHHHHHHHHhhhH--HHHHHhHHHHHHHHHHHHHHHhhHHHHHHh
Q 026138 127 EAMFVRAEKNVNELNLSG-----ELMKKESKKLLERAALAEKEMIRGE--TELKNAGNQVQRLAKQVYKVETQAADLMEG 199 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~sv-----dl~k~Es~KL~eraa~AE~E~~RGr--tkLr~ag~qiq~l~ss~yK~E~~A~gL~d~ 199 (243)
++|+..+|+-||+|..-+ .-...|.+..++|+..|...|..=| ..+-.-.++......-+.+.|.+-..+.-.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999997643 3344444444444444444443211 112233455666688888999988888877
Q ss_pred hccC-----Cch-HHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 200 LREI-----PGR-EALKLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 200 Lr~l-----Psr-eA~~LRaeVAs~as~lk~qR~aL~ 230 (243)
|..| |.. +-..|+++|+.+-.++..+|.-|.
T Consensus 302 L~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 302 YAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 7755 333 667789999999999998888774
No 11
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.63 E-value=33 Score=34.17 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=54.6
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 122 rf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
.+.++ .-++..+++.+.+..++...+.+.++|++.+.-.|.++..=...|+++...+ +++++.-..+-+.|.
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l-------~~~~~~I~~~~~~l~ 104 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDL-------KKLRKQIADLNARLN 104 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHhhHHHHHHHHH
Confidence 34444 6678899999999999999999999998888888877766555555555555 455555555555555
Q ss_pred cCCchH
Q 026138 202 EIPGRE 207 (243)
Q Consensus 202 ~lPsre 207 (243)
.|+..+
T Consensus 105 ~l~~q~ 110 (420)
T COG4942 105 ALEVQE 110 (420)
T ss_pred HHHHHH
Confidence 555555
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=85.56 E-value=26 Score=31.15 Aligned_cols=89 Identities=26% Similarity=0.333 Sum_probs=67.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch-
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR- 206 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr- 206 (243)
..+..++.++.+....+..+..++.+..+|+..+|.....=...|+..+..|++|--+.-+....-..+-+.++.|..+
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5667788888899999999999999999999999999999999999999999998766655555544455555555444
Q ss_pred HHHHHHHHHH
Q 026138 207 EALKLRAEVA 216 (243)
Q Consensus 207 eA~~LRaeVA 216 (243)
.-..-|++.|
T Consensus 186 keaE~Rae~a 195 (237)
T PF00261_consen 186 KEAENRAEFA 195 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444444
No 13
>PRK14160 heat shock protein GrpE; Provisional
Probab=85.21 E-value=22 Score=32.20 Aligned_cols=75 Identities=16% Similarity=0.152 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhcc
Q 026138 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLRE 202 (243)
Q Consensus 125 SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~ 202 (243)
|+|+.+...+..+..|...++.++.+...|.++..-+..|| -+..+-.++-.. .-|..++-+..|+..+..
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef-------eN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY-------DNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 45556666666666666666666666666666555554444 444443333322 357788899999988888
Q ss_pred CCch
Q 026138 203 IPGR 206 (243)
Q Consensus 203 lPsr 206 (243)
|=..
T Consensus 124 LerA 127 (211)
T PRK14160 124 LERA 127 (211)
T ss_pred HHHH
Confidence 7654
No 14
>PRK14161 heat shock protein GrpE; Provisional
Probab=84.64 E-value=23 Score=31.03 Aligned_cols=78 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 124 ~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
.+|+.+..-++.-|+.++..++.++.|...+.++..-+..||..=|-... ++... -.-|..++-+..|+..+..|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~---ke~~~--~~~~a~~~~~~~LLpv~Dnl 82 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE---KARDE--AKDYAIATFAKELLNVSDNL 82 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH--HHHHHHHHHHHHHhhHHhHH
Confidence 36888889999999999999988888888888777666666655443222 22222 23477888999998888777
Q ss_pred Cch
Q 026138 204 PGR 206 (243)
Q Consensus 204 Psr 206 (243)
=..
T Consensus 83 erA 85 (178)
T PRK14161 83 SRA 85 (178)
T ss_pred HHH
Confidence 543
No 15
>PRK11637 AmiB activator; Provisional
Probab=84.38 E-value=39 Score=32.30 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=46.7
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E 190 (243)
.-++..+.++..+...++....++..+...+...++++..-..+|.....++...+..+|+.-
T Consensus 75 ~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 75 AQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345555666666666777777777777777777788888888888888888888888888843
No 16
>PRK09039 hypothetical protein; Validated
Probab=82.67 E-value=12 Score=35.32 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=65.9
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH-HHHHHhhHHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ-VYKVETQAADL 196 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss-~yK~E~~A~gL 196 (243)
..+..+.+....+...|.-|++-|+.+++.+..|+..+..+|.+-.--+.++..-+..|+..+.. +-..++=...+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 77888999999999999999999999999999999999999999988888999999999888744 55555554445
No 17
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=82.40 E-value=16 Score=27.92 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhHhhccc
Q 026138 59 TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRG 110 (243)
Q Consensus 59 ~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g~a~~ag~lll~g 110 (243)
++.+..+.+..+++...+..=..|++==..+ =++++|+++.+|+|+=|+
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 46 RAEDAADQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHHHHhCC
Confidence 3444455555555555555444454422222 257889999999988653
No 18
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=77.94 E-value=41 Score=29.14 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=9.3
Q ss_pred ccchhHHHHHHhhhhh
Q 026138 108 MRGPRRFLFRHTFGRL 123 (243)
Q Consensus 108 l~gpRrfL~r~Tlgrf 123 (243)
+---++|+|....+-+
T Consensus 24 y~ll~kf~~ppI~~iL 39 (155)
T PRK06569 24 YIFVYKFITPKAEEIF 39 (155)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 3345677776555544
No 19
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=77.69 E-value=48 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026138 208 ALKLRAEVASMASLLKRQRAMMDKQIMKISEL 239 (243)
Q Consensus 208 A~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~ 239 (243)
-...+..+..+...+...|..+-..|..|+--
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~~l~~~l~~ifpI 159 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRRQLIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34567777888899999999999999988754
No 20
>PRK14140 heat shock protein GrpE; Provisional
Probab=75.13 E-value=49 Score=29.46 Aligned_cols=52 Identities=19% Similarity=0.357 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH--HHHHHHHhhHHHHHHhhccCC
Q 026138 153 KLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIP 204 (243)
Q Consensus 153 KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~--ss~yK~E~~A~gL~d~Lr~lP 204 (243)
+|.+.+.-.++.++|-..++-+..+-.++-. ..-|.+++-+..|++.+..|=
T Consensus 48 ~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvlDnLe 101 (191)
T PRK14140 48 ELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPALDNFE 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444333 345788999999999888873
No 21
>PRK04654 sec-independent translocase; Provisional
Probab=74.20 E-value=31 Score=31.59 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=41.5
Q ss_pred HhhccchhHHH-HHHhhhhhccH-HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 105 LLFMRGPRRFL-FRHTFGRLRSE-EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 105 ~lll~gpRrfL-~r~Tlgrf~SE-Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
.|++-||-|+= +-+++|++.-+ -.+++.....+.+= ..++.++.+.+++.+.+..++.+++.....|++++..+++.
T Consensus 16 ALlV~GPerLPe~aRtlGk~irk~R~~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~~~ 94 (214)
T PRK04654 16 ALVVLGPERLPKAARFAGLWVRRARMQWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALHDD 94 (214)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34555777652 33344433221 02344444443322 12345566666666666667777777777777666666544
Q ss_pred HH
Q 026138 183 AK 184 (243)
Q Consensus 183 ~s 184 (243)
.+
T Consensus 95 ~~ 96 (214)
T PRK04654 95 VS 96 (214)
T ss_pred hh
Confidence 33
No 22
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=73.63 E-value=73 Score=29.12 Aligned_cols=7 Identities=0% Similarity=0.131 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 026138 157 RAALAEK 163 (243)
Q Consensus 157 raa~AE~ 163 (243)
....+++
T Consensus 173 ~l~~~~~ 179 (423)
T TIGR01843 173 QLEVISE 179 (423)
T ss_pred HHHHHHH
Confidence 3333333
No 23
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.92 E-value=94 Score=28.42 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=12.9
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (243)
Q Consensus 161 AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E 190 (243)
++.++..-+.++.++..+|..+...+-..+
T Consensus 201 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~ 230 (423)
T TIGR01843 201 LERERAEAQGELGRLEAELEVLKRQIDELQ 230 (423)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 24
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=68.92 E-value=1.5e+02 Score=30.69 Aligned_cols=107 Identities=17% Similarity=0.285 Sum_probs=79.9
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHH----HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKE----SKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 202 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~E----s~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~ 202 (243)
+.++.....++.+|...-+..+.. .+.|.+....=+.|.++=..+++....+++.++.-+..=|-.-.-|...+..
T Consensus 400 ~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~ 479 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEK 479 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466778888888888888876654 4555566666678888888999999999999999999999999999999999
Q ss_pred CCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 203 IPGR-EALKLRAEVASMASLLKRQRAMMDKQI 233 (243)
Q Consensus 203 lPsr-eA~~LRaeVAs~as~lk~qR~aL~k~i 233 (243)
+|.. .=+..=.-|=.++..+++|+.-++|-+
T Consensus 480 ~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl 511 (594)
T PF05667_consen 480 LPKDVNRSAYTRRILEIVKNIRKQKEEIEKIL 511 (594)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9987 111222335566677777776555443
No 25
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=68.56 E-value=89 Score=30.72 Aligned_cols=108 Identities=16% Similarity=0.128 Sum_probs=57.4
Q ss_pred hhHHHHHHHhHhhcc-chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 026138 95 AATGVALTAGLLFMR-GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (243)
Q Consensus 95 ~~~g~a~~ag~lll~-gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr 173 (243)
+.+.|++.+..+++| +++.-|-...-.++..=...+...-..-..-......+-++...++.....+.-|..+++
T Consensus 137 iGi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~~~---- 212 (650)
T PF04632_consen 137 IGILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPRLR---- 212 (650)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCchhH----
Confidence 344556667788888 677777777666666555555443322221111344455555556666666655554433
Q ss_pred HhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 174 NAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 174 ~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
.....++.+..++...=.....+-+.+..+|..
T Consensus 213 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 245 (650)
T PF04632_consen 213 RRRRRLRALQARLLRLLALLRSLARRLAALPDA 245 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 333444455444444445555555555544443
No 26
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=68.49 E-value=70 Score=26.82 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=63.3
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E 190 (243)
+.....+..++..+.+..++...+..+.++..++.+-.....++++.-..++......+..+.+..-...
T Consensus 81 ~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 81 GELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999999999999999999999999999999888888888888999999998888888888888887
No 27
>PRK14148 heat shock protein GrpE; Provisional
Probab=66.65 E-value=91 Score=27.85 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=40.2
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 142 ~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
..++.+..++..|++.+..-.+.+.|-..++-+..+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 40 ~e~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerA 106 (195)
T PRK14148 40 EQLERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQA 106 (195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3344444555555555555555566666666666665555543 3577889999999888877544
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=66.48 E-value=2.2e+02 Score=32.69 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=48.7
Q ss_pred HHhHhhccchhHHHHHHhhh----------hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 026138 102 TAGLLFMRGPRRFLFRHTFG----------RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 171 (243)
Q Consensus 102 ~ag~lll~gpRrfL~r~Tlg----------rf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtk 171 (243)
++-|+.=+.-||-|+--..| .+...+.-+.+.+..++++...++-++.+.++..+-....+ ++.+-..+
T Consensus 271 aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~e 349 (1486)
T PRK04863 271 AADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEK 349 (1486)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34455555667777655433 33333444444444444455555555555555444433333 23333445
Q ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 172 LKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 172 Lr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
+...-.++..+-...-..+.....+.+.+.++
T Consensus 350 i~~l~~~LeELee~Lee~eeeLeeleeeleel 381 (1486)
T PRK04863 350 IERYQADLEELEERLEEQNEVVEEADEQQEEN 381 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444444444433
No 29
>PRK14139 heat shock protein GrpE; Provisional
Probab=66.46 E-value=94 Score=27.54 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=57.0
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKL 211 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~L 211 (243)
.|+..+..|...++.++.|...|.++..-+..||..=+-.+.....+ -.-|..++-+..|++.+..|=..-.. .
T Consensus 29 ~~~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~-----~~~~a~~~~~~~LLpv~DnLerAl~~-~ 102 (185)
T PRK14139 29 AAEDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAK-----AHKFAIESFAESLLPVKDSLEAALAD-E 102 (185)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHhHHHHHHhc-c
Confidence 45566677777777777777777776665555555333222222222 23467788889998888877544211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026138 212 RAEVASMASLLKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 212 RaeVAs~as~lk~qR~aL~k~i~KIs~~GV~ 242 (243)
.....++ +.--...+.+-+.-..++||.
T Consensus 103 ~~~~~~l---~~Gv~mi~k~l~~vL~k~Gv~ 130 (185)
T PRK14139 103 SGDLEKL---REGVELTLKQLTSAFEKGRVV 130 (185)
T ss_pred cchHHHH---HHHHHHHHHHHHHHHHHCCCc
Confidence 1122233 334444444444455667774
No 30
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.69 E-value=1.6e+02 Score=32.91 Aligned_cols=67 Identities=33% Similarity=0.352 Sum_probs=48.6
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHH-hhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCc
Q 026138 139 ELNLSGELMKKESKKLLERAALAEKEM-IRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205 (243)
Q Consensus 139 eL~~svdl~k~Es~KL~eraa~AE~E~-~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPs 205 (243)
+-..+|+..|.+...+.+.++.++++. +.+-..+-+..+.+..|.+.+-++|.+-..|.+.+.++-.
T Consensus 362 ~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 362 EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555556666666666 8888888888888899999999999988888888877643
No 31
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.59 E-value=1.9e+02 Score=32.80 Aligned_cols=101 Identities=16% Similarity=0.209 Sum_probs=64.5
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--------------HHHH----HHhhHH
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--------------QVYK----VETQAA 194 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--------------s~yK----~E~~A~ 194 (243)
++....+|.+.-+..+.|..++++.+.-..+++..-+++++-+-.+|.=|.+ +.-. .+....
T Consensus 463 l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~ 542 (1293)
T KOG0996|consen 463 LDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKT 542 (1293)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556667777788888888888888888888888877777766654421 1111 333455
Q ss_pred HHHHhhccCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 195 DLMEGLREIPGR--EALKLRAEVASMASLLKRQRAMMDKQI 233 (243)
Q Consensus 195 gL~d~Lr~lPsr--eA~~LRaeVAs~as~lk~qR~aL~k~i 233 (243)
.|-+...+||+. +..+...++..+..+..+-++.+.+.-
T Consensus 543 ~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~r 583 (1293)
T KOG0996|consen 543 ELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLR 583 (1293)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 666777788885 666666666666666665444444433
No 32
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=65.59 E-value=68 Score=25.57 Aligned_cols=69 Identities=10% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHhhc-chhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhh--HHHHHHHHHHHH
Q 026138 88 SAREH-PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM--KKESKKLLERAA 159 (243)
Q Consensus 88 ~A~~h-P~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~--k~Es~KL~eraa 159 (243)
+-..| |++.++++++.+++.+.=.|+|- +-.++..=++-+..-+.++..+.+.++.+ +.+..+|+-++.
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~a---~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~ 75 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIFWLWLRRTYA---KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELA 75 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556 77777777666665544343321 12222222222333344445555555555 455555444433
No 33
>PRK14154 heat shock protein GrpE; Provisional
Probab=65.53 E-value=97 Score=28.06 Aligned_cols=57 Identities=11% Similarity=0.196 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 150 ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 150 Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
++..|++.+..-...|+|=..++-+..+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 60 el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRA 118 (208)
T PRK14154 60 QLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHG 118 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 33333333333344444555555555544444433 3467888899999888877554
No 34
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.37 E-value=1.3e+02 Score=28.90 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=57.4
Q ss_pred HhhccchhHHHHHHhhhhhcc-HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Q 026138 105 LLFMRGPRRFLFRHTFGRLRS-EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN 177 (243)
Q Consensus 105 ~lll~gpRrfL~r~Tlgrf~S-EEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~ 177 (243)
+=+.+.-|+|+..+.||-=++ -|+.-+.-+..+....++++.+..|..++.++...-..|+-+-.+.|.++-.
T Consensus 98 y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~ 171 (300)
T KOG2629|consen 98 YAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLV 171 (300)
T ss_pred HHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566788888777777666 3555666677778888889999999999999999999999999888888854
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=65.23 E-value=1.6e+02 Score=30.44 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=54.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA 208 (243)
++..+.++..++...+..++.|...|..+..-++++...-+-+++....-|-.+-..+--+=+.-..|-| +-
T Consensus 100 ~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~--------e~ 171 (546)
T KOG0977|consen 100 LLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALED--------EL 171 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH--------HH
Confidence 4556666677777777777777777777777777766666666665444444332222211111122222 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 209 LKLRAEVASMASLLKRQRAMMDKQI 233 (243)
Q Consensus 209 ~~LRaeVAs~as~lk~qR~aL~k~i 233 (243)
.+|+.|.+.+-.++..-|+.|++++
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Et 196 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDET 196 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4556666666666666666665544
No 36
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=63.42 E-value=1.9e+02 Score=29.94 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=46.6
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 167 RGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-------------EALKLRAEVASMASLLKRQRAMMDK 231 (243)
Q Consensus 167 RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr-------------eA~~LRaeVAs~as~lk~qR~aL~k 231 (243)
+=...+.....||+.+-..+-.++.++..|.+.|+++-.. ++-.|+.+.|.+...+|..+.-..+
T Consensus 280 ~~~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~q 357 (546)
T PF07888_consen 280 QLQQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQ 357 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566677777777777888888888888877665 6778888888888887776655443
No 37
>PRK02224 chromosome segregation protein; Provisional
Probab=63.20 E-value=1.9e+02 Score=29.91 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=34.5
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 138 ~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
+.+...++.+..+...+.+.+...+.++.....++.....+|..+-...-..+.+-..+.+.+..+|..
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~ 413 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDF 413 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHH
Confidence 344444444455555555555555555555555555555555555555444444433333444444443
No 38
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=62.94 E-value=1.7e+02 Score=29.27 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=55.0
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCC------chHHH
Q 026138 136 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP------GREAL 209 (243)
Q Consensus 136 ~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lP------sreA~ 209 (243)
.|..|+..++..|.|...|.++...+...+..-.++|..+..+|..+-..--+.-....++-..|.++- .+++.
T Consensus 310 ~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~ 389 (522)
T PF05701_consen 310 SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAE 389 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555566677777777777777777777777776654433333333333433343332 23555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026138 210 KLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~aL~ 230 (243)
..|.|+..+-.++.+.+..+.
T Consensus 390 ~~~~E~~~~k~E~e~~ka~i~ 410 (522)
T PF05701_consen 390 EAKEEVEKAKEEAEQTKAAIK 410 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554
No 39
>PRK14163 heat shock protein GrpE; Provisional
Probab=62.54 E-value=1.2e+02 Score=27.55 Aligned_cols=65 Identities=8% Similarity=0.005 Sum_probs=42.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
..+|+..++.++.|+..|.++..-+..||..=+-. +.++... ..-|..++-+..|+..|..|=..
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR---~~kE~e~--~~~~a~~~~~~~LLpVlDnLerA 106 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRR---VERDRVT--VKEIAVANLLSELLPVLDDVGRA 106 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHHhhhHhHHHHH
Confidence 46677777777777777777665555555433322 2222222 23577899999999998888655
No 40
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=62.02 E-value=82 Score=29.54 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=43.5
Q ss_pred chhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhH
Q 026138 93 PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGE 169 (243)
Q Consensus 93 P~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGr 169 (243)
|-....+-.++|-|...--=-+-|+.+...-.--..-+..++.+.++.+..++..+.++.++.+.+..-+.+|...-
T Consensus 186 ~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~ 262 (344)
T PF12777_consen 186 PEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQ 262 (344)
T ss_dssp HHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666555544566666665555555555555556665555555555555555555555555554433
No 41
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=61.38 E-value=1.3e+02 Score=27.52 Aligned_cols=91 Identities=22% Similarity=0.230 Sum_probs=50.4
Q ss_pred hhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHh
Q 026138 120 FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 199 (243)
Q Consensus 120 lgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~ 199 (243)
+++...+++. ..|.++...++..++..++ |.+......++...=+++|+...+.+....+.+--..+|+.++.+.
T Consensus 120 l~~l~~l~~~-~~~~~~~~~lk~~~~~~~~----~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 120 LRELATLRAN-EKAMKENEALKKQLENSSK----LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHhhhcccc----hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 4455444444 4555555556655555443 3333333334444444445555555555566666667777777666
Q ss_pred hccCCchHHHHHHHHHH
Q 026138 200 LREIPGREALKLRAEVA 216 (243)
Q Consensus 200 Lr~lPsreA~~LRaeVA 216 (243)
-..+ ..+.++||.+|-
T Consensus 195 ydrL-lee~~~Lq~~i~ 210 (216)
T KOG1962|consen 195 YDRL-LEEYSKLQEQIE 210 (216)
T ss_pred HHHH-HHHHHHHHHHHh
Confidence 5554 246778888774
No 42
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=60.01 E-value=72 Score=23.99 Aligned_cols=63 Identities=14% Similarity=0.163 Sum_probs=47.9
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~ 189 (243)
...++...+-++.++..+|.+.+|...+....-.--++....--++...-..+..+..++...
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345888889999999999999999999988887777777776666666666666666555443
No 43
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=59.41 E-value=2.4e+02 Score=29.80 Aligned_cols=158 Identities=13% Similarity=0.156 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchh--hHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHH
Q 026138 74 YEDAFFSKVKDELVSAREHPAA--ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES 151 (243)
Q Consensus 74 yEd~~f~kiK~gv~~A~~hP~~--~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es 151 (243)
.++-|...||..|.--...|.. ++.- ....--+-..+||.+.| -.|+. |- +.+.++--.+++.-+++++.+.
T Consensus 501 ~~~sF~~~Ik~lL~r~~~qPill~s~~k---~~~p~~~E~l~lL~~a~-~vlre-eY-i~~~~~ar~ei~~rv~~Lk~~~ 574 (717)
T PF10168_consen 501 SPPSFEKHIKSLLQRSSSQPILLKSSDK---SSSPSPQECLELLSQAT-KVLRE-EY-IEKQDLAREEIQRRVKLLKQQK 574 (717)
T ss_pred ccchHHHHHHHHhcCCCCCCeecCCCcc---ccCCCCHHHHHHHHHHH-HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888776633344755 1110 11111223356666443 45552 22 3334555566666777777777
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc-C--CchHHHHHHHHHHHHHHHHHHHHHH
Q 026138 152 KKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE-I--PGREALKLRAEVASMASLLKRQRAM 228 (243)
Q Consensus 152 ~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~-l--PsreA~~LRaeVAs~as~lk~qR~a 228 (243)
++-++++...+++..-=+.+-..-...+..+...=-++++++..++..+.. + .+.-=-+++.|+..|...++.-+..
T Consensus 575 e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~s 654 (717)
T PF10168_consen 575 EQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKAS 654 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766666666665533322222222334555555555667777777666654 2 3443378888888888888877777
Q ss_pred HHHHHHHHh
Q 026138 229 MDKQIMKIS 237 (243)
Q Consensus 229 L~k~i~KIs 237 (243)
+++.=+|+.
T Consensus 655 i~~lk~k~~ 663 (717)
T PF10168_consen 655 IEQLKKKLD 663 (717)
T ss_pred HHHHHHHHH
Confidence 776555543
No 44
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=59.32 E-value=35 Score=28.42 Aligned_cols=69 Identities=28% Similarity=0.300 Sum_probs=44.7
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcc------hhhHHHHHHHhHhhcc---chhHHHHHHh
Q 026138 49 FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHP------AAATGVALTAGLLFMR---GPRRFLFRHT 119 (243)
Q Consensus 49 i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP------~~~~g~a~~ag~lll~---gpRrfL~r~T 119 (243)
+|..-..++..+++.++...+.|...|+.+=..++. -+..| .+.+++++.+|+++-| .++||+|=-.
T Consensus 50 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~~P~~ 125 (158)
T PF09769_consen 50 AREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFLYPLA 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhHHHHH
Confidence 445555677888888888888888888755444443 44444 2455677777877776 2556666444
Q ss_pred hh
Q 026138 120 FG 121 (243)
Q Consensus 120 lg 121 (243)
+|
T Consensus 126 ~g 127 (158)
T PF09769_consen 126 FG 127 (158)
T ss_pred HH
Confidence 44
No 45
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=59.04 E-value=2.1e+02 Score=29.06 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=39.8
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 026138 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 174 (243)
Q Consensus 95 ~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ 174 (243)
+..++...+|+=.+-+-+.-|=. .+.+..++. ..+....++++|...++.+..+.+.+.+.....+.+..+-..++..
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~-~~~~~~~~~-~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~ 248 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTN-VLRRRKKSE-LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHH-HHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666554444433222 123334433 2455556666666666666666666555555554444444444443
Q ss_pred h
Q 026138 175 A 175 (243)
Q Consensus 175 a 175 (243)
.
T Consensus 249 l 249 (650)
T TIGR03185 249 L 249 (650)
T ss_pred H
Confidence 3
No 46
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=58.81 E-value=1e+02 Score=25.41 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=36.0
Q ss_pred HHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 026138 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 102 ~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~e 156 (243)
+..++++---++|||.-..+-+..=+..+..--...++++..++.+++|.+..+.
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~ 69 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILK 69 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556789998888777666666666666666666666666666655443
No 47
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=57.97 E-value=1.5e+02 Score=27.03 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 026138 114 FLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (243)
Q Consensus 114 fL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E 164 (243)
..|..+..++..|-..+..-+.-++++++.++.|-.|-....+.+..-..+
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~D 61 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQD 61 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888888888888888888888888888877777666555444
No 48
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.76 E-value=69 Score=25.52 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhccCCch-HHHHHHHHHHHHHHHHHHHHHHH
Q 026138 176 GNQVQRLAKQVYKVETQAADLMEGLREIPGR-EALKLRAEVASMASLLKRQRAMM 229 (243)
Q Consensus 176 g~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr-eA~~LRaeVAs~as~lk~qR~aL 229 (243)
...+..+...+-+.+++-..|=..++.+|++ +-..|+-+++.|--+++.-+..+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4556666666677788888888899999999 66778888888887777665554
No 49
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=57.02 E-value=1.2e+02 Score=25.69 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhcchhh---HHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 026138 78 FFSKVKDELVSAREHPAAA---TGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 153 (243)
Q Consensus 78 ~f~kiK~gv~~A~~hP~~~---~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~K 153 (243)
||=-+-.++.+|.+||++- .-..+...++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.+.
T Consensus 3 ~~~~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~ 81 (167)
T PRK08475 3 FFLLLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALK 81 (167)
T ss_pred HHHHHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455667888888744 222233344455555668987777766555555444444444444444444444433
No 50
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.79 E-value=2.3e+02 Score=28.80 Aligned_cols=31 Identities=16% Similarity=0.167 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 026138 208 ALKLRAEVASMASLLKRQ-RAMMDKQIMKISE 238 (243)
Q Consensus 208 A~~LRaeVAs~as~lk~q-R~aL~k~i~KIs~ 238 (243)
|.++|.-+......+.++ +..|.+.+..+++
T Consensus 485 ~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~ 516 (650)
T TIGR03185 485 ADKAKKTLKEFREKLLERKLQQLEEEITKSFK 516 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666655555555 6777777777664
No 51
>PRK14145 heat shock protein GrpE; Provisional
Probab=56.66 E-value=1.5e+02 Score=26.61 Aligned_cols=94 Identities=15% Similarity=0.101 Sum_probs=54.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHH
Q 026138 144 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMASL 221 (243)
Q Consensus 144 vdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~ 221 (243)
++.++.++.+|++.+.-....++|-..++-+..+-.++-.. .-|.+++-+..|++.+..|=..-+. -....++..-
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~--~~~~~~l~~G 124 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS--SGDYNSLKEG 124 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc--cccHHHHHHH
Confidence 44555555566666665666666666666666666655544 3477899999999988887654222 1223333344
Q ss_pred HHHHHHHHHHHHHHHhhcCCC
Q 026138 222 LKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 222 lk~qR~aL~k~i~KIs~~GV~ 242 (243)
++-.++.|.+. ..++||.
T Consensus 125 v~mi~k~l~~v---L~k~GVe 142 (196)
T PRK14145 125 IELIYRQFKKI---LDKFGVK 142 (196)
T ss_pred HHHHHHHHHHH---HHHCCCE
Confidence 44444444333 3456663
No 52
>PRK14143 heat shock protein GrpE; Provisional
Probab=56.23 E-value=1.7e+02 Score=26.98 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=38.3
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH--HHHHHHHhhHHHHHHhhccCCch
Q 026138 136 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 136 ~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~--ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
.+..|...++.+++|.+.|.++..-+..|| -|-.+-.++-. -.-|.+++-+..|+..+..|=..
T Consensus 68 ~~~~l~~el~~l~~e~~elkd~~lR~~Adf-------eN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerA 133 (238)
T PRK14143 68 RLAQLEQELESLKQELEELNSQYMRIAADF-------DNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERA 133 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455566666666666666666554444444 34333333322 23378899999999888877554
No 53
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.96 E-value=98 Score=28.63 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~ 165 (243)
+...+..+++|+..+-.+..|++++.+|..-+|+-|
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777777777766
No 54
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=55.90 E-value=23 Score=29.12 Aligned_cols=95 Identities=23% Similarity=0.222 Sum_probs=43.3
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchH-HHHHHHHHHH
Q 026138 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGRE-ALKLRAEVAS 217 (243)
Q Consensus 139 eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsre-A~~LRaeVAs 217 (243)
++...++.+.++++.|.++...+..++..-+-.+.. +... ...|..+.-+..|++.+..|...- +..=..+..+
T Consensus 15 ~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~---e~~~--~~~~~~~~~~~~ll~v~D~l~~a~~~~~~~~~~~~ 89 (165)
T PF01025_consen 15 ELEEELEELEKEIEELKERLLRLQAEFENYRKRLEK---EKEE--AKKYALEKFLKDLLPVLDNLERALEAAKSNEEEES 89 (165)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHCCHHHHHHHHHHHHHHHHHHHCC-SHHCTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 344445555555555555555555444433322211 1111 122455666777777776665542 2111112234
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC
Q 026138 218 MASLLKRQRAMMDKQIMKISELGV 241 (243)
Q Consensus 218 ~as~lk~qR~aL~k~i~KIs~~GV 241 (243)
+...++.-...|.+.| .++||
T Consensus 90 ~~~g~~~~~~~l~~~L---~~~Gv 110 (165)
T PF01025_consen 90 LLEGLEMILKQLEDIL---EKNGV 110 (165)
T ss_dssp HHHHHHHHHHHHHHHH---HTTTE
T ss_pred HHHHHHHHHHHHHHHH---HHCCC
Confidence 4444444444444443 45665
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.87 E-value=1.2e+02 Score=25.39 Aligned_cols=70 Identities=21% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHH------------------------HHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLL------------------------ERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~------------------------eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
|.-+...+..+..|...+..+-.|+.++. .|+.+-|+++-+--.+|+.+...|+..
T Consensus 27 e~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 27 EQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhHHHH
Q 026138 183 AKQVYKVETQAADL 196 (243)
Q Consensus 183 ~ss~yK~E~~A~gL 196 (243)
-..+-.+|++...|
T Consensus 107 d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 107 DVKAEHFERKVKAL 120 (143)
T ss_pred HHHhHHHHHHHHHH
No 56
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.54 E-value=1.9e+02 Score=27.57 Aligned_cols=180 Identities=16% Similarity=0.140 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhh-------hhccChHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHH---HHHh
Q 026138 24 AKEWVEDLQRSVIQSKDSAIRSARS-------FQHNSSTYLQTLQDFVLHGVSQYQTYEDAF---FSKVKDEL---VSAR 90 (243)
Q Consensus 24 ~~~w~e~~qkt~~~s~Dsai~~a~s-------i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~---f~kiK~gv---~~A~ 90 (243)
+.-|..+||+ ..++.++||+-|.+ +..-|...++..++-+..-..+.+..=+-+ +..+++.+ ..-.
T Consensus 33 AgA~Y~~yQ~-~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~ 111 (301)
T PF06120_consen 33 AGAWYYFYQN-AEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQL 111 (301)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888988 78899999999986 777888888766544333333222221111 12233333 1222
Q ss_pred hcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHH
Q 026138 91 EHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET 170 (243)
Q Consensus 91 ~hP~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrt 170 (243)
.+|..+......-.+.-+..-=+=|=..|. -+.-++.-++.++.++++.+..++.+....--+...-...+.-......
T Consensus 112 ~~~~~~~~~~~~n~~~~~~~~t~~la~~t~-~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~~e~~~~~~sl~ 190 (301)
T PF06120_consen 112 AEKGITENGYIINHLMSQADATRKLAEATR-ELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKAAEQAGAYNSLK 190 (301)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443322222111111111111222222 2334555666777777777776666555544333322222233333333
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCc
Q 026138 171 ELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205 (243)
Q Consensus 171 kLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPs 205 (243)
.+...+.++-+++...-++=....++...=-.||.
T Consensus 191 ~~~g~~~ef~~l~~l~n~~~~~~q~l~~~p~~ip~ 225 (301)
T PF06120_consen 191 GMNGAHAEFNRLMGLGNQLLAARQGLANSPPRIPK 225 (301)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhcccccCCCCCCC
Confidence 44455566666655543332233344433223666
No 57
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=55.54 E-value=46 Score=31.21 Aligned_cols=96 Identities=20% Similarity=0.264 Sum_probs=59.7
Q ss_pred chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Q 026138 110 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (243)
Q Consensus 110 gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~ 189 (243)
.|.+--....-..+.--+..+..++.++.++...+..++.+.+........-+.++.....+|..|.+=|.+|.+.--.=
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 45444444444445555566666777777777777777777766666666666677777777777777777776655555
Q ss_pred HhhHHHHHHhhccCCc
Q 026138 190 ETQAADLMEGLREIPG 205 (243)
Q Consensus 190 E~~A~gL~d~Lr~lPs 205 (243)
+.+...+...+..||+
T Consensus 297 ~~~~~~l~~~~~~l~G 312 (344)
T PF12777_consen 297 SEQIEELEEQLKNLVG 312 (344)
T ss_dssp HCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHH
Confidence 5555555555555544
No 58
>PRK14156 heat shock protein GrpE; Provisional
Probab=55.39 E-value=1.4e+02 Score=26.27 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH--HHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH
Q 026138 149 KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQR 226 (243)
Q Consensus 149 ~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss--~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR 226 (243)
.+++.|++++..-...+.|-..++-|-.+-.++-... -|..++-+..|+..+..|=..-. ......++.. .-.
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~--~~~~~~~l~~---Gv~ 108 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALA--VEGLTDDVKK---GLE 108 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHh--CcccchhHHH---HHH
Confidence 3344444444444555566666666666655555444 67889999999998888755411 1111122333 333
Q ss_pred HHHHHHHHHHhhcCCC
Q 026138 227 AMMDKQIMKISELGVS 242 (243)
Q Consensus 227 ~aL~k~i~KIs~~GV~ 242 (243)
.++++-+.-..++||.
T Consensus 109 mi~k~l~~~L~~~GV~ 124 (177)
T PRK14156 109 MVQESLIQALKEEGVE 124 (177)
T ss_pred HHHHHHHHHHHHCCCe
Confidence 4444444455677874
No 59
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=55.26 E-value=1.1e+02 Score=24.82 Aligned_cols=98 Identities=12% Similarity=0.189 Sum_probs=64.2
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 209 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~ 209 (243)
+.+.......+...+..++.+++...+.+..|+..|-+--.+=-.+...|+.+=...-........|... +-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~--------~~ 83 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAE--------AE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Confidence 4556667778888888999999999999999999999887776666666666655555555444444432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 210 KLRAEVASMASLLKRQRAMMDKQIMK 235 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~aL~k~i~K 235 (243)
..+..+...-.....+|..|.+.|..
T Consensus 84 ~a~~~l~~~e~sw~~qk~~le~e~~~ 109 (132)
T PF07926_consen 84 SAKAELEESEASWEEQKEQLEKELSE 109 (132)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333444444455555555555543
No 60
>PRK14162 heat shock protein GrpE; Provisional
Probab=55.18 E-value=1.6e+02 Score=26.38 Aligned_cols=64 Identities=19% Similarity=0.310 Sum_probs=37.1
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH--HHHHHHHhhHHHHHHhhccCCch
Q 026138 136 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 136 ~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~--ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
.++.|...++.++.+...|.++. +|-..++-|..+-.++-. -.-|.+++-+..|+..+..|=..
T Consensus 40 e~~~l~~~l~~l~~e~~elkd~~-------lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 105 (194)
T PRK14162 40 PVEDLEKEIADLKAKNKDLEDKY-------LRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAMDNLERA 105 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 34445555555555555555554 444444444444444332 23467889999999888877443
No 61
>PRK14146 heat shock protein GrpE; Provisional
Probab=54.73 E-value=1.7e+02 Score=26.54 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 147 ~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
++.++..|.+.+.--...+.|-..++-+..+...+-.. .-|.+++-+.+|+..+..|=..
T Consensus 59 l~~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~DnlerA 120 (215)
T PRK14146 59 LQKELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPIDNLERV 120 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 34445555555555556666666666666666655543 4578899999999988888644
No 62
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=54.64 E-value=82 Score=27.00 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=8.1
Q ss_pred HHHHHHhhHHHHHHhhccCC
Q 026138 185 QVYKVETQAADLMEGLREIP 204 (243)
Q Consensus 185 s~yK~E~~A~gL~d~Lr~lP 204 (243)
.++++++.+..+...+.+=|
T Consensus 102 ~~~~~~~~~~~I~~~v~~~P 121 (199)
T PF10112_consen 102 KVSRIEKIARRIFKYVEKDP 121 (199)
T ss_pred HHHHHHHHHHHHHHHHHHCH
Confidence 33444444444444443333
No 63
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=54.63 E-value=2e+02 Score=32.22 Aligned_cols=137 Identities=18% Similarity=0.229 Sum_probs=102.1
Q ss_pred HhhccchhHHHHHHh--hhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 105 LLFMRGPRRFLFRHT--FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 105 ~lll~gpRrfL~r~T--lgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
+..+.-.++-||-.- -.+|.|.+..=+-.-.....|...++..+.-..+|+.-..-.|.++..-..+++.--..|...
T Consensus 365 l~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~ 444 (1200)
T KOG0964|consen 365 LAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINET 444 (1200)
T ss_pred HHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 445566666666332 246888888888888889999999999999888998888888888877777666666666666
Q ss_pred HHHHHHHHhhHHHHHHhhccCCc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 026138 183 AKQVYKVETQAADLMEGLREIPG------REALKLRAEVASMASLLKRQRAMMDKQIMKISELGV 241 (243)
Q Consensus 183 ~ss~yK~E~~A~gL~d~Lr~lPs------reA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~GV 241 (243)
-.++......-..++..+.++-. ||=.+||+.++++-.+|.+.-+.|.....+-.--||
T Consensus 445 ~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~~~~r~v~nGi 509 (1200)
T KOG0964|consen 445 KGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRATMNRSVANGI 509 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 56666666666677777766654 456789999999999999998888876665555555
No 64
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=53.18 E-value=1.3e+02 Score=24.96 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=35.8
Q ss_pred hHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 026138 96 ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (243)
Q Consensus 96 ~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~ 155 (243)
+...-++..++++---.+|||.-..+-+..=+..+...-.+.++++..++.+..|.+..+
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQEL 83 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555689999887776666566666555556666555555555554443
No 65
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=52.58 E-value=1.5e+02 Score=25.46 Aligned_cols=47 Identities=9% Similarity=0.070 Sum_probs=39.9
Q ss_pred hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 026138 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLER 157 (243)
Q Consensus 111 pRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~er 157 (243)
-+.|+|.-..+.+..=+..+...-.+.+.+++.++.++.|.++.+..
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~ 67 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKK 67 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998888888888888888888888888888777643
No 66
>PRK14155 heat shock protein GrpE; Provisional
Probab=52.09 E-value=1.8e+02 Score=26.26 Aligned_cols=96 Identities=16% Similarity=0.148 Sum_probs=53.0
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH--HHHHHHHhhHHHHHHhhccCCchHHH-HH--
Q 026138 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA--KQVYKVETQAADLMEGLREIPGREAL-KL-- 211 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~--ss~yK~E~~A~gL~d~Lr~lPsreA~-~L-- 211 (243)
.++|...++.+++|...|.++..-+..||. |-.+-.++-. -.-|.+++-+..|+..+..|=..-.. .-
T Consensus 15 ~~~l~~~l~~le~e~~elkd~~lR~~Aefe-------N~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerAl~~~~~~~ 87 (208)
T PRK14155 15 ADDAAQEIEALKAEVAALKDQALRYAAEAE-------NTKRRAEREMNDARAYAIQKFARDLLGAADNLGRATAASPKDS 87 (208)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHhcccccc
Confidence 356666666666666666655554444444 4444443333 34577899999999988887554211 10
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026138 212 -RAEVASMASLLKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 212 -RaeVAs~as~lk~qR~aL~k~i~KIs~~GV~ 242 (243)
-.++.++..-++-..+.|.+. ..++||.
T Consensus 88 ~~~~~~~i~~Gvemi~k~~~~~---L~k~GV~ 116 (208)
T PRK14155 88 ADPAVKNFIIGVEMTEKELLGA---FERNGLK 116 (208)
T ss_pred cchHHHHHHHHHHHHHHHHHHH---HHHCCCc
Confidence 022444444444444444444 3467763
No 67
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=50.24 E-value=78 Score=25.33 Aligned_cols=27 Identities=11% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~e 156 (243)
+...+++...|++.-+.++.|.+.|.+
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344444444444444444444444443
No 68
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=49.00 E-value=2.1e+02 Score=26.01 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=21.5
Q ss_pred hHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHH
Q 026138 96 ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMF 130 (243)
Q Consensus 96 ~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall 130 (243)
+...-+...++++--=.+|||+-...-+.-=+.-+
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I 41 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRI 41 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666668999988777665444333
No 69
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.42 E-value=2.4e+02 Score=26.67 Aligned_cols=73 Identities=11% Similarity=0.219 Sum_probs=55.3
Q ss_pred chhHHHHHHhhhh-hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 110 GPRRFLFRHTFGR-LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 110 gpRrfL~r~Tlgr-f~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
.|+--+|-.+++- .+.-+.-++..+.++..+...|+.+-+....+....--..+++-.-..++...-++|.-+
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777 777777788887777777777777777777777777777777777777777777777665
No 70
>PRK00708 sec-independent translocase; Provisional
Probab=48.40 E-value=2.2e+02 Score=26.03 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=12.5
Q ss_pred HhHhhccchhHHH-HHHhhhhh
Q 026138 103 AGLLFMRGPRRFL-FRHTFGRL 123 (243)
Q Consensus 103 ag~lll~gpRrfL-~r~Tlgrf 123 (243)
+..|++-||.++= .-+++|++
T Consensus 14 vVaLvV~GPkrLP~~~R~lGk~ 35 (209)
T PRK00708 14 IVLIVVVGPKDLPPMLRAFGKM 35 (209)
T ss_pred HHHHhhcCchHHHHHHHHHHHH
Confidence 3445666888763 34566665
No 71
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=48.04 E-value=2e+02 Score=25.50 Aligned_cols=66 Identities=26% Similarity=0.341 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 126 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 126 EEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
=|+++...++....+++.|+.+..+.+.-+..+. .+|+.--.+-..+++.+|.+|.++.+|-..+.
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~----------~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~ 206 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAG----------EELRYLEQRWKELVSKNLEIEVACEELEQEIE 206 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999999999988887776532 34555566667778888888888887764433
No 72
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=47.75 E-value=2.2e+02 Score=25.90 Aligned_cols=93 Identities=24% Similarity=0.251 Sum_probs=55.4
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC---------------
Q 026138 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI--------------- 203 (243)
Q Consensus 139 eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l--------------- 203 (243)
+++..++.....+..|.+....-..|+..-...|.....++.-|-..+-+.|....+|.+.|...
T Consensus 42 e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~de 121 (202)
T PF06818_consen 42 ELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDE 121 (202)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccch
Confidence 33333344444444444444444445555666666666666666667777777777777777665
Q ss_pred -------CchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 204 -------PGREALKLRAEVASMASLLKRQRAMMDK 231 (243)
Q Consensus 204 -------PsreA~~LRaeVAs~as~lk~qR~aL~k 231 (243)
+....-.|+.+|-.+..+|..+|.-.+.
T Consensus 122 ak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~ 156 (202)
T PF06818_consen 122 AKAQRQAGEDELGSLRREVERLRAELQRERQRREE 156 (202)
T ss_pred hHHhhccccccchhHHHHHHHHHHHHHHHHHhHHH
Confidence 1223455777888888887777765553
No 73
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=46.72 E-value=2.2e+02 Score=25.59 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch---HHHHHHHHHHHHHHHHH
Q 026138 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR---EALKLRAEVASMASLLK 223 (243)
Q Consensus 147 ~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr---eA~~LRaeVAs~as~lk 223 (243)
++.....+.........+....+..++....+|++|-..+.+...+-..|-+.|.++-.. +--.+...|+.+=+++.
T Consensus 193 y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~ 272 (312)
T PF00038_consen 193 YQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELA 272 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHH
Confidence 333444445555555566666666666666666666666666666666666666665533 33344455555555554
Q ss_pred HHHHHHH
Q 026138 224 RQRAMMD 230 (243)
Q Consensus 224 ~qR~aL~ 230 (243)
.-|.-+.
T Consensus 273 ~l~~~~~ 279 (312)
T PF00038_consen 273 ELREEMA 279 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 74
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=46.66 E-value=1.7e+02 Score=24.29 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 026138 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 154 (243)
Q Consensus 102 ~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL 154 (243)
+..++++--=.+|||.-..+-+..=+..+...-...++.+..++.+..|.++.
T Consensus 16 i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~ 68 (164)
T PRK14471 16 ILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERL 68 (164)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455578999999988887777777766666666666666666665543
No 75
>PRK14158 heat shock protein GrpE; Provisional
Probab=46.19 E-value=2.2e+02 Score=25.46 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=36.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 145 ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 145 dl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
+.+..++.+|++.+...++.+.|-..++-|..+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 43 ~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerA 106 (194)
T PRK14158 43 KELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERA 106 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 3334444444444444444555555555555555544433 3577889999999888877554
No 76
>PRK14151 heat shock protein GrpE; Provisional
Probab=46.15 E-value=2e+02 Score=25.10 Aligned_cols=96 Identities=11% Similarity=0.207 Sum_probs=51.1
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch-HHHHHHH
Q 026138 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR-EALKLRA 213 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr-eA~~LRa 213 (243)
+..|...++.++.|+..+.++. .|-..++-|-.+..++-.. .-|.+++-+..|++.+..|=.. ++..--.
T Consensus 22 ~~~l~~~i~~le~e~~el~d~~-------lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~ 94 (176)
T PRK14151 22 GDDLTARVQELEEQLAAAKDQS-------LRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADD 94 (176)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccc
Confidence 3455555555666666555554 4444444455554444433 3477889999999888877554 2211111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026138 214 -EVASMASLLKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 214 -eVAs~as~lk~qR~aL~k~i~KIs~~GV~ 242 (243)
.+.++..-++-..+.|.+ -..++||.
T Consensus 95 ~~~~~~~~Gv~mi~k~l~~---~L~k~Gv~ 121 (176)
T PRK14151 95 EAIKPMREGVELTLKMFQD---TLKRYQLE 121 (176)
T ss_pred hhHHHHHHHHHHHHHHHHH---HHHHCCCE
Confidence 123444444444444443 34467763
No 77
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.51 E-value=3.3e+02 Score=30.40 Aligned_cols=164 Identities=19% Similarity=0.206 Sum_probs=88.0
Q ss_pred cccccchHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHHH
Q 026138 20 RTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGV 99 (243)
Q Consensus 20 ~~~~~~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g~ 99 (243)
-++++-+=+||.+| |++|+-.+...=.=.++- -++.-|-.+ .++|.-|..|++--++-+
T Consensus 373 ~lEETlSTLEYA~R------------AKnIkNKPevNQkl~K~~--llKd~~~EI-----erLK~dl~AaReKnGvyi-- 431 (1041)
T KOG0243|consen 373 NLEETLSTLEYAHR------------AKNIKNKPEVNQKLMKKT--LLKDLYEEI-----ERLKRDLAAAREKNGVYI-- 431 (1041)
T ss_pred cHHHHHHHHHHHHH------------hhhccCCCccchHHHHHH--HHHHHHHHH-----HHHHHHHHHhHhhCceEe--
Confidence 37778888888888 778877665441111111 123333333 467888887777644321
Q ss_pred HHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH-------HHHHHHhhhHHHH
Q 026138 100 ALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA-------LAEKEMIRGETEL 172 (243)
Q Consensus 100 a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa-------~AE~E~~RGrtkL 172 (243)
+- -+|..+|.-++.....+++|...++.+..+++.+.+... .=-++...=..+|
T Consensus 432 ---------se----------e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 432 ---------SE----------ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred ---------ch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 233356666777777777777777777766666665554 2223333333444
Q ss_pred HHhHHHHHHHHHHHHHHHhh------HHHHHHhhccCCchHHHHHHHHHHHHHHHHH
Q 026138 173 KNAGNQVQRLAKQVYKVETQ------AADLMEGLREIPGREALKLRAEVASMASLLK 223 (243)
Q Consensus 173 r~ag~qiq~l~ss~yK~E~~------A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk 223 (243)
.+.-.++.++-.-.-++..+ ..+.++.+..--.+.|..||.....+..++.
T Consensus 493 ~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s 549 (1041)
T KOG0243|consen 493 QNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLS 549 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443332222222 2222222222222348888888887777775
No 78
>PF14635 HHH_7: Helix-hairpin-helix motif ; PDB: 3PSI_A 3PSF_A.
Probab=44.92 E-value=6.8 Score=31.84 Aligned_cols=56 Identities=32% Similarity=0.428 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHH--HHhhcchhhHHHHHHHhHhhccchhHH
Q 026138 54 STYLQTLQDFVLHGVSQYQTYEDAFFSKV-KDELV--SAREHPAAATGVALTAGLLFMRGPRRF 114 (243)
Q Consensus 54 ~~~~~~~~~~l~~~~sqy~~yEd~~f~ki-K~gv~--~A~~hP~~~~g~a~~ag~lll~gpRrf 114 (243)
+..|+-+|+++|. ..-+..+|..|...+ .-||+ .|..||+.+..+=-+.|+ |||--
T Consensus 5 sl~lHplQ~~l~~-d~L~~~le~~~vd~vN~vGVDIN~a~~~~~~~~~LqfV~GL----GPRKA 63 (104)
T PF14635_consen 5 SLKLHPLQDLLPK-DKLLEALERAFVDVVNQVGVDINRAVSHPHLANLLQFVCGL----GPRKA 63 (104)
T ss_dssp TS---TTGGGS-H-HHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT------HHHH
T ss_pred eeecCcchhhCCH-HHHHHHHHHHHHHHHHhhCccHHHHhcChHHHhhHhHhcCC----ChHHH
Confidence 4567788888884 345678999999988 66654 899999998865555554 78753
No 79
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.75 E-value=2.1e+02 Score=29.84 Aligned_cols=91 Identities=25% Similarity=0.228 Sum_probs=70.2
Q ss_pred hccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 026138 107 FMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (243)
Q Consensus 107 ll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~ 186 (243)
++-.|+|-. ..||.|- |.-|-+--+--+...++-..+..|..|.+|-++-||.+|.-=-.||+-|.+||.-+++.-
T Consensus 11 ~f~~l~r~~--~~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~r 86 (604)
T KOG3564|consen 11 LFEQLVRDI--EILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRR 86 (604)
T ss_pred hHHHHHHHH--HHhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 344444433 3567777 555667777888888899999999999999999999999999999999999999988764
Q ss_pred -------HHHHhhHHHHHHhhc
Q 026138 187 -------YKVETQAADLMEGLR 201 (243)
Q Consensus 187 -------yK~E~~A~gL~d~Lr 201 (243)
-+.|++-..+.|-|+
T Consensus 87 r~ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 87 RRAEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 355666666666654
No 80
>PHA02562 46 endonuclease subunit; Provisional
Probab=42.95 E-value=3.2e+02 Score=26.44 Aligned_cols=91 Identities=13% Similarity=0.154 Sum_probs=45.0
Q ss_pred cchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH-------HHHHHHhhhHHHHHHhHHHHHH
Q 026138 109 RGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA-------LAEKEMIRGETELKNAGNQVQR 181 (243)
Q Consensus 109 ~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa-------~AE~E~~RGrtkLr~ag~qiq~ 181 (243)
+..|+-+|..-+|.=.= +.+-.....++++++..++.+..+...+.++.. ..++.+. ..+..-..++..
T Consensus 149 ~~er~~il~~l~~~~~~-~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~---~~i~~l~~e~~~ 224 (562)
T PHA02562 149 APARRKLVEDLLDISVL-SEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNG---ENIARKQNKYDE 224 (562)
T ss_pred hHhHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHHHH
Confidence 56688788777663211 122222333344444445555544444444443 3333332 233344455555
Q ss_pred HHHHHHHHHhhHHHHHHhhccC
Q 026138 182 LAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 182 l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
+.+....++.+-..|.+.|-.+
T Consensus 225 l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 225 LVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666665555444
No 81
>PRK14153 heat shock protein GrpE; Provisional
Probab=42.94 E-value=2.5e+02 Score=25.15 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=38.9
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
.+++.+...++.++.++..| ++.|+|-..++-+..+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 33 ~~~~~~~~ei~~l~~e~~el-------kd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerA 99 (194)
T PRK14153 33 PEDSTADSETEKCREEIESL-------KEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERA 99 (194)
T ss_pred hhcccchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 33444555555555555444 45555555555555555544433 4577889999999888887544
No 82
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.92 E-value=2.4e+02 Score=25.06 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=3.5
Q ss_pred cCCchHH
Q 026138 202 EIPGREA 208 (243)
Q Consensus 202 ~lPsreA 208 (243)
++|-...
T Consensus 121 d~Pf~~~ 127 (251)
T PF11932_consen 121 DLPFLLE 127 (251)
T ss_pred CCCCChH
Confidence 4565533
No 83
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=42.40 E-value=5.1e+02 Score=28.64 Aligned_cols=31 Identities=6% Similarity=-0.069 Sum_probs=18.6
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHhHHHHHH
Q 026138 49 FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFF 79 (243)
Q Consensus 49 i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f 79 (243)
-++....+++.+..-+..+..++...+..++
T Consensus 505 ~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~ 535 (1201)
T PF12128_consen 505 ERDQAEEELRQARRELEELRAQIAELQRQLD 535 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4555556666666666666666666665553
No 84
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=41.36 E-value=1.4e+02 Score=24.51 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 026138 214 EVASMASLLKRQRAMMDKQIMKISELGVSV 243 (243)
Q Consensus 214 eVAs~as~lk~qR~aL~k~i~KIs~~GV~V 243 (243)
++..+-++++.....+...|..|-+.||.|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~v 73 (120)
T PF09969_consen 44 EVNGLEAELEELEARLRELIDEIEELGVEV 73 (120)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHcCcEE
Confidence 555556666777777788888999999865
No 85
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=41.21 E-value=3.2e+02 Score=25.91 Aligned_cols=105 Identities=15% Similarity=0.256 Sum_probs=53.6
Q ss_pred hhhhccHHHHHHHHHHhHHHH----HHhHHhhHHHHHHHHHHHHHHHH----HHhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 026138 120 FGRLRSEEAMFVRAEKNVNEL----NLSGELMKKESKKLLERAALAEK----EMIRGETELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 120 lgrf~SEEall~~Ae~~v~eL----~~svdl~k~Es~KL~eraa~AE~----E~~RGrtkLr~ag~qiq~l~ss~yK~E~ 191 (243)
+..+++++.++..-...++++ +..-+.++.|...|.+...-.+. |+.+-+.+|...-.+|...-+.+--.+.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655555443 33344455555555544444322 5555556666666666555555555555
Q ss_pred hHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHH
Q 026138 192 QAADLMEGLREIPGREALKLRAEVASMASLLKRQ 225 (243)
Q Consensus 192 ~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~q 225 (243)
+-..+.+.+...- .+=.+++++++..-+.+.+.
T Consensus 233 ~l~~l~~~I~~~~-~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 233 ELQELESKIEDLT-NKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 5555555554321 12334555555444444333
No 86
>PF15456 Uds1: Up-regulated During Septation
Probab=41.04 E-value=88 Score=26.00 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=33.0
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Q 026138 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 183 (243)
Q Consensus 142 ~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ 183 (243)
..||.+|+|.+.|..|+-....-+. =.+|+|.|..-|.++-
T Consensus 22 eEVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~ 62 (124)
T PF15456_consen 22 EEVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLY 62 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 3578888999999988888877777 7888888888877763
No 87
>PF13997 YqjK: YqjK-like protein
Probab=40.75 E-value=31 Score=26.10 Aligned_cols=29 Identities=41% Similarity=0.650 Sum_probs=20.2
Q ss_pred HHHHHHhhcchhhHHHHHHHhHhhccchhHHH
Q 026138 84 DELVSAREHPAAATGVALTAGLLFMRGPRRFL 115 (243)
Q Consensus 84 ~gv~~A~~hP~~~~g~a~~ag~lll~gpRrfL 115 (243)
++|...+.||...+|+.+ ++.++.|++++
T Consensus 31 ~~l~~lr~~~~l~~g~~a---~~~ir~P~r~~ 59 (73)
T PF13997_consen 31 QTLRSLRRHPILGSGVLA---LYGIRHPRRLI 59 (73)
T ss_pred HHHHHHHHhHHHHHHHHH---HHHHhChHHHH
Confidence 455578889987766544 45678899864
No 88
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=39.97 E-value=5.5e+02 Score=28.38 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=52.9
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
.....|...+..+..+.+.+.++......+++.=+.+|...-+.+...+......-+.-..++..|..+
T Consensus 816 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~ 884 (1201)
T PF12128_consen 816 EEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKALEEQLEQLEEQLRRLRDLLEKLAEL 884 (1201)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 345666677777788888888888888888888888888888888887777777777777777777654
No 89
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=39.32 E-value=3.1e+02 Score=25.17 Aligned_cols=52 Identities=13% Similarity=0.268 Sum_probs=27.7
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHH---HHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKK---LLERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~K---L~eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
..++++++..+..++..+.+.++ |.+.=...+.+|..-++++.++..+++..
T Consensus 117 ~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a 171 (346)
T PRK10476 117 ASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQA 171 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554443 33444455566666666666666655544
No 90
>PRK14147 heat shock protein GrpE; Provisional
Probab=38.54 E-value=2.7e+02 Score=24.26 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=36.7
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 140 L~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
|...++.+++|+..|.+ .+.|-..++-|-.+..++-.. .-|..++-+..|++.+..|=..
T Consensus 23 l~~~l~~l~~e~~elkd-------~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~DnlerA 84 (172)
T PRK14147 23 LKAEVESLRSEIALVKA-------DALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFDSLDAG 84 (172)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44445555555555544 445555555555555555443 3466788899999888877554
No 91
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=37.37 E-value=1.8e+02 Score=21.94 Aligned_cols=70 Identities=20% Similarity=0.277 Sum_probs=55.5
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 202 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~ 202 (243)
.+..+.+=-.-|..+..|.++|-..-..-..-.+.=|.+....-.+|..+-..+-+.|.....|.+.|..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556666677788888888888887777777778888888888888888888888888888888777653
No 92
>PRK02224 chromosome segregation protein; Provisional
Probab=37.32 E-value=4.9e+02 Score=26.98 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=14.8
Q ss_pred hhccChHHHHHHHHHHHHHHHHHHhHHHH
Q 026138 49 FQHNSSTYLQTLQDFVLHGVSQYQTYEDA 77 (243)
Q Consensus 49 i~~tS~~~~~~~~~~l~~~~sqy~~yEd~ 77 (243)
+-..+|.....+.+-+-++ ..|..|...
T Consensus 143 ~l~~~p~~R~~ii~~l~~l-~~~e~~~~~ 170 (880)
T PRK02224 143 LINATPSDRQDMIDDLLQL-GKLEEYRER 170 (880)
T ss_pred HHcCCHHHHHHHHHHHhCC-HHHHHHHHH
Confidence 3344555555665555555 555555443
No 93
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=37.24 E-value=1e+02 Score=26.41 Aligned_cols=58 Identities=19% Similarity=0.101 Sum_probs=40.4
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh-----hhHHHHHHhHHHHHHHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI-----RGETELKNAGNQVQRLAKQVY 187 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~-----RGrtkLr~ag~qiq~l~ss~y 187 (243)
-...++++..++...+..+.|.+.|++++..+|++.- ..+-.+-.+-=||-=+..++.
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit 130 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASIT 130 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence 4556788888999999999999999988888776542 334445555555555555554
No 94
>PRK10698 phage shock protein PspA; Provisional
Probab=37.18 E-value=3.1e+02 Score=24.54 Aligned_cols=92 Identities=25% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh--------HHHHHHHHHHHHHHHhhHHHHH---
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--------GNQVQRLAKQVYKVETQAADLM--- 197 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~a--------g~qiq~l~ss~yK~E~~A~gL~--- 197 (243)
-+.++-+.-+.+...++.+..+..++.++|.+| +..|+-.|--. ..++..|-...-..+..+..|.
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l 122 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677778888888888888887665 45555555332 3344444333333444444444
Q ss_pred ----HhhccCCch-HHHHHHHHHHHHHHHHH
Q 026138 198 ----EGLREIPGR-EALKLRAEVASMASLLK 223 (243)
Q Consensus 198 ----d~Lr~lPsr-eA~~LRaeVAs~as~lk 223 (243)
..|.+.-.+ ..+..|..+|..--.+.
T Consensus 123 ~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~ 153 (222)
T PRK10698 123 GELENKLSETRARQQALMLRHQAASSSRDVR 153 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 55555555555444333
No 95
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.04 E-value=2.2e+02 Score=22.83 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=40.8
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
||.-|+--++=|=..-+-+......|.++...+..+..+-+.++.....+|+.|
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777888888888888888777777777777766665
No 96
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=36.85 E-value=2.4e+02 Score=23.33 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=32.3
Q ss_pred HHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 026138 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 154 (243)
Q Consensus 102 ~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL 154 (243)
...++++--=++|||.-..+-+..=+..+..--...+..+..++.+..|.+..
T Consensus 16 inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 68 (164)
T PRK14473 16 INFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAE 68 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555567899988887776666666555555555555555555554444
No 97
>PRK14150 heat shock protein GrpE; Provisional
Probab=36.85 E-value=3e+02 Score=24.34 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=31.3
Q ss_pred HHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 162 EKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 162 E~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
...+.|-.+++-+..+..++-.. ..|.+++-+.+|++.+..|=..
T Consensus 58 kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerA 104 (193)
T PRK14150 58 RDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERA 104 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHH
Confidence 35566666666666666555543 4578899999999998887554
No 98
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=36.49 E-value=12 Score=30.88 Aligned_cols=100 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHH-
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL- 209 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~- 209 (243)
..|...+.+--..++.++..+.++.+.+..-..++..-...+.++.++|...-.++-.++..+-.|++.|+.+-...--
T Consensus 6 ~~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~ 85 (138)
T PF06009_consen 6 DEANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENN 85 (138)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3444555555556666666666666666666666665566677889999999999999999999999999888555221
Q ss_pred -HHHHHHHHHHHHHHHHHHHHH
Q 026138 210 -KLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 210 -~LRaeVAs~as~lk~qR~aL~ 230 (243)
.++..+..+--.+.+-|.+.+
T Consensus 86 ~~ls~nI~~IrelI~qAR~~An 107 (138)
T PF06009_consen 86 SNLSRNISRIRELIAQARDAAN 107 (138)
T ss_dssp ----------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHh
Confidence 155555555444555554443
No 99
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=36.23 E-value=2.8e+02 Score=23.81 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=28.3
Q ss_pred hHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 026138 104 GLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 152 (243)
Q Consensus 104 g~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~ 152 (243)
.++|+--..+|+|....+-+..=+..+..--.+.++++..++.+..|.+
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye 89 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYN 89 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3444445588999877777766555555555555555444444444433
No 100
>PRK11677 hypothetical protein; Provisional
Probab=36.12 E-value=1.3e+02 Score=25.59 Aligned_cols=34 Identities=15% Similarity=0.071 Sum_probs=24.2
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~ 160 (243)
|.-+..++.+.+.+++.|...=.++.+|.+.+.-
T Consensus 35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~ 68 (134)
T PRK11677 35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAK 68 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777766553
No 101
>PRK12704 phosphodiesterase; Provisional
Probab=35.50 E-value=4.8e+02 Score=26.37 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026138 212 RAEVASMASLLKRQRAMMDKQIMKISE 238 (243)
Q Consensus 212 RaeVAs~as~lk~qR~aL~k~i~KIs~ 238 (243)
..++..+-.++.+........|.+|+.
T Consensus 123 e~eLe~~~~~~~~~~~~~~~~l~~~a~ 149 (520)
T PRK12704 123 QQELEKKEEELEELIEEQLQELERISG 149 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444444444555555554
No 102
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=35.41 E-value=3.9e+02 Score=25.30 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=22.0
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 195 DLMEGLREIPGREALKLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 195 gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~ 230 (243)
.+...+..++..+-..++++++....++.+.+..++
T Consensus 216 ~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 216 QADFQLAGVAEKELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555666667777777666666665553
No 103
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=35.25 E-value=2.5e+02 Score=27.13 Aligned_cols=71 Identities=15% Similarity=0.287 Sum_probs=48.2
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAD 195 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~g 195 (243)
..|.+|+.| +..+.-+..++..+..+..|+..+.+.-...- ..|+..|..+...|..|...+-.+-.+|..
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~ 82 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEE 82 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888886 56777777777777777766665543332111 357778888888888888888777666643
No 104
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=34.77 E-value=3e+02 Score=28.81 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=35.2
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGN 177 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~ 177 (243)
..+++|+.|+..|..+.++++-++..++..|.++.+-+.++++..+
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~ 128 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRH 128 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888777777776655
No 105
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=34.76 E-value=1.5e+02 Score=27.74 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=40.5
Q ss_pred hhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 026138 94 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE 162 (243)
Q Consensus 94 ~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE 162 (243)
.++..+|.+.|+++=-+| =.+.|.+.-+.++..|++..+.++.|.+.+..+...++
T Consensus 11 l~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d 66 (308)
T PF11382_consen 11 LAAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAAD 66 (308)
T ss_pred HHHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666665444 34578888888899999999999888888877665443
No 106
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=34.66 E-value=2.8e+02 Score=23.31 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=10.3
Q ss_pred hHHHHHHhhhhhccHHHHH
Q 026138 112 RRFLFRHTFGRLRSEEAMF 130 (243)
Q Consensus 112 RrfL~r~Tlgrf~SEEall 130 (243)
.+|||.-..+.+..=...+
T Consensus 28 ~k~l~~pi~~~le~R~~~I 46 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKI 46 (167)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3788866555554433333
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=34.57 E-value=3.1e+02 Score=23.89 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr 173 (243)
..-....+.+++.|+..++.++.+.+...+++......+..-+..|.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666666666655555555555555555
No 108
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=34.54 E-value=60 Score=23.92 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHH---HHHHhHHhhHHHHHHHHHH
Q 026138 127 EAMFVRAEKNVN---ELNLSGELMKKESKKLLER 157 (243)
Q Consensus 127 Eall~~Ae~~v~---eL~~svdl~k~Es~KL~er 157 (243)
.++...|++..+ ++...++.++.|+.||+-|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 467777777665 6778888899998888753
No 109
>PRK14149 heat shock protein GrpE; Provisional
Probab=34.48 E-value=3.4e+02 Score=24.28 Aligned_cols=84 Identities=20% Similarity=0.249 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 157 RAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIM 234 (243)
Q Consensus 157 raa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~ 234 (243)
.+.--...+.|-..++-+-.+-.++-.. .-|..++-+..|+..|..|=..=.. -..-....+-++.-..++++-+.
T Consensus 51 e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~--~~~~~~~~~l~~Gv~mi~k~l~~ 128 (191)
T PRK14149 51 KYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGALKS--AAEVDKESALTKGLELTMEKLHE 128 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc--cccccchHHHHHHHHHHHHHHHH
Confidence 3333344455555555555554444433 3467888999999888887543110 00111122334444555555555
Q ss_pred HHhhcCCC
Q 026138 235 KISELGVS 242 (243)
Q Consensus 235 KIs~~GV~ 242 (243)
-..++||.
T Consensus 129 vL~k~GV~ 136 (191)
T PRK14149 129 VLARHGIE 136 (191)
T ss_pred HHHHCCCE
Confidence 55678874
No 110
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=33.67 E-value=2.1e+02 Score=21.69 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=36.3
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQ 180 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq 180 (243)
.+|..=+.+|..+=..|.+++.|...|.+.-.... .....|+..-.+++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHH
Confidence 36777889999999999999999999988654433 44556666655555
No 111
>PRK01156 chromosome segregation protein; Provisional
Probab=33.21 E-value=5.9e+02 Score=26.65 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=32.9
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH---HHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE---RAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 197 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~e---raa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~ 197 (243)
..+......+.....++.++...++.++.+...+.. .....++++.+=..++.....++..+...+-.++.....+.
T Consensus 629 ~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~ 708 (895)
T PRK01156 629 NNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILR 708 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444443321 12223333444444444444444444444444444444444
Q ss_pred H
Q 026138 198 E 198 (243)
Q Consensus 198 d 198 (243)
+
T Consensus 709 ~ 709 (895)
T PRK01156 709 T 709 (895)
T ss_pred h
Confidence 3
No 112
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=33.15 E-value=1.1e+02 Score=25.26 Aligned_cols=59 Identities=27% Similarity=0.376 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHH--HHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 148 KKESKKLLERAALAEK--EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 148 k~Es~KL~eraa~AE~--E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
+.+...+.++....+. +...+..++.....+|+.++..+-..--..+|+=-.|-++|+.
T Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~ 86 (120)
T PF09969_consen 26 KAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAK 86 (120)
T ss_pred HHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCcc
Confidence 3444444444433322 6677788888888888888877766666666665567777764
No 113
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=32.42 E-value=4.1e+02 Score=24.62 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHH---------HHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc-CCchHHH
Q 026138 140 LNLSGELMKKESKKLLERAALAEKEMIRGETE---------LKNAGNQVQRLAKQVYKVETQAADLMEGLRE-IPGREAL 209 (243)
Q Consensus 140 L~~svdl~k~Es~KL~eraa~AE~E~~RGrtk---------Lr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~-lPsreA~ 209 (243)
.+...+-+..+..++++++..||.++..-+.+ -.....+|..|-...-..|.+-+.+...... -| +-.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P--~v~ 245 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNP--QVP 245 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--chH
Confidence 45666777788888888888888766654441 1223344555555555555555444443333 33 344
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026138 210 KLRAEVASMASLLKRQRA 227 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~ 227 (243)
.+|++++.+-..+.+++.
T Consensus 246 ~l~~~i~~l~~~i~~e~~ 263 (362)
T TIGR01010 246 SLQARIKSLRKQIDEQRN 263 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666655544
No 114
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=32.37 E-value=1.4e+02 Score=23.34 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=36.8
Q ss_pred HhhccCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCC
Q 026138 198 EGLREIPGREALKLRAEVASM----ASLLKRQRAMMDKQIMKISELGV 241 (243)
Q Consensus 198 d~Lr~lPsreA~~LRaeVAs~----as~lk~qR~aL~k~i~KIs~~GV 241 (243)
-.|+.+|.+.|-.+|.|+..+ .+++..-|+.+-..+.+..+-|.
T Consensus 59 ~il~nms~r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~~~G~ 106 (110)
T PF01706_consen 59 KILSNMSKRAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLEEEGE 106 (110)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcC
Confidence 468999999999999999886 56888888888888999888884
No 115
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=32.29 E-value=6.5e+02 Score=26.97 Aligned_cols=74 Identities=23% Similarity=0.254 Sum_probs=55.6
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
|.-++.|...|..|+..++.++.+...+.+ ..+.+..+-++.+-+-..++.++.++.-........|-.+|+.+
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~---~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l 431 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEE---RYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRAL 431 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 466778888888888888888888888877 44556666777777777778887776666666777777777765
No 116
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=32.22 E-value=3.7e+02 Score=26.21 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=47.4
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCc
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~---E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPs 205 (243)
-+.....+..++...+|.++.|..++-+.+..... +...=..+.++-..+|..+....+.+|.+-..++..|--||.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~ 108 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPH 108 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 34456667777777777777777777766643110 100111123444556777777777788777777777766665
Q ss_pred h
Q 026138 206 R 206 (243)
Q Consensus 206 r 206 (243)
.
T Consensus 109 ~ 109 (425)
T PRK05431 109 D 109 (425)
T ss_pred c
Confidence 4
No 117
>PRK03918 chromosome segregation protein; Provisional
Probab=32.18 E-value=5.8e+02 Score=26.29 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHH---HHHHhHHHHHHHHHHHHHHHhh
Q 026138 116 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET---ELKNAGNQVQRLAKQVYKVETQ 192 (243)
Q Consensus 116 ~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrt---kLr~ag~qiq~l~ss~yK~E~~ 192 (243)
+...+..+...-.-+...+..+++++..++.+.++...+.+.....+.++..=.. .|.....+++.+-+..-..+.+
T Consensus 174 ~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~ 253 (880)
T PRK03918 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGS 253 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhccCCch-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 193 AADLMEGLREIPGR-----------------------------EALKLRAEVASMASLLKRQRAMMDKQIMKI 236 (243)
Q Consensus 193 A~gL~d~Lr~lPsr-----------------------------eA~~LRaeVAs~as~lk~qR~aL~k~i~KI 236 (243)
-..+.+.+..+=.. .+..+.......-..+.+++..+.+.+.++
T Consensus 254 ~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~l 326 (880)
T PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 118
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.10 E-value=7.5e+02 Score=27.56 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH--HHHHHHHHhhHHHHHHhhccCCchH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL--AKQVYKVETQAADLMEGLREIPGRE 207 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l--~ss~yK~E~~A~gL~d~Lr~lPsre 207 (243)
+..++.++.++..+++.+..|.+.+.+.....+.++..-...-++-..+|..+ -..+-.++.+...|-..+.++-..+
T Consensus 972 L~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~ 1051 (1311)
T TIGR00606 972 LKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQ 1051 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 208 ALKLRAEVASMASLLKRQRAMMDKQIMKI 236 (243)
Q Consensus 208 A~~LRaeVAs~as~lk~qR~aL~k~i~KI 236 (243)
-..-+.++..--+.+..++..+...+.++
T Consensus 1052 ~~~e~~~l~~~~~~l~~~~a~l~g~~k~l 1080 (1311)
T TIGR00606 1052 MKQEHQKLEENIDLIKRNHVLALGRQKGY 1080 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 119
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.83 E-value=8e+02 Score=27.76 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=60.5
Q ss_pred ccchhHHH--HHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Q 026138 108 MRGPRRFL--FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (243)
Q Consensus 108 l~gpRrfL--~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss 185 (243)
++.-+.-| |+..+..|+.--.-+..|.......+..++.+..+....++.+..++.+...-..+|......+..++..
T Consensus 846 l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~ee 925 (1353)
T TIGR02680 846 LEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDE 925 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345566 7777777776666677777777777777777777777777777777777777666766666665544332
Q ss_pred HHHHHhhHHHHHHhhccCCch
Q 026138 186 VYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 186 ~yK~E~~A~gL~d~Lr~lPsr 206 (243)
++.+-..+...|..+|+.
T Consensus 926 ---l~a~L~e~r~rL~~l~~e 943 (1353)
T TIGR02680 926 ---IRARLAETRAALASGGRE 943 (1353)
T ss_pred ---HHHHHHHHHHHHHHHHHH
Confidence 333333444444444443
No 120
>PRK10698 phage shock protein PspA; Provisional
Probab=31.63 E-value=3.8e+02 Score=23.95 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=59.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA 208 (243)
++.+++-=.+-|++.+..+..++.++... +-+-.+.-+...+++..+-..+-+-|.+|..-+..=++==-++|
T Consensus 18 ~ldkaEDP~k~l~q~i~em~~~l~~~r~a-------lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~A 90 (222)
T PRK10698 18 LLEKAEDPQKLVRLMIQEMEDTLVEVRST-------SARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAA 90 (222)
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555666666666555555322 22223344555666777777777778887777664444445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 209 LKLRAEVASMASLLKRQRAMMDKQIMK 235 (243)
Q Consensus 209 ~~LRaeVAs~as~lk~qR~aL~k~i~K 235 (243)
+.-+..++..+..++.+.......+.+
T Consensus 91 L~~K~~~~~~~~~l~~~~~~~~~~~~~ 117 (222)
T PRK10698 91 LIEKQKLTDLIATLEHEVTLVDETLAR 117 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777666666655544
No 121
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=31.52 E-value=8.1e+02 Score=27.73 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 171 ELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 171 kLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~ 230 (243)
++..+..++..+-...-..|.+...+...+.+|-.-+|.....+...+..+++.....+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~ 350 (1353)
T TIGR02680 291 ELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA 350 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444445555555556666666655565554444444444444333333
No 122
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=31.43 E-value=1.5e+02 Score=25.62 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=32.8
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026138 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK 81 (243)
Q Consensus 25 ~~w~e~~qkt~~~s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~k 81 (243)
..|++.|++-+.=.+|++=..-..++.+-..||. ..++.+..+|+.-+|.+|.+
T Consensus 22 P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~---~~~~~li~~~~~s~dp~~~~ 75 (167)
T PF11157_consen 22 PEFAQQYQQRLGGHLDELRRQVAGFQATAARYFG---GDREALIAHYRQSSDPVFRA 75 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHhCCCHHHHh
Confidence 3577778877777777665554444444444432 23556667777777766665
No 123
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=31.19 E-value=3.6e+02 Score=23.51 Aligned_cols=77 Identities=25% Similarity=0.336 Sum_probs=44.2
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccH-HHHHHHHHHhHHHHHHhHHhhHH-HHHHHHHHHHHHHHHHhhhHHHH
Q 026138 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRAEKNVNELNLSGELMKK-ESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 95 ~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SE-Eall~~Ae~~v~eL~~svdl~k~-Es~KL~eraa~AE~E~~RGrtkL 172 (243)
+++.+++++|+++ +++.++..+.....+ +.++..|+.+.+.++.....--+ |..+ .-...|.|+..-+.+|
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~---~r~~~E~E~~~~~~el 80 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQK---LRQELERELKERRKEL 80 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 4455556666666 667777776654433 46677777777776655543322 2322 2334667776666666
Q ss_pred HHhHHH
Q 026138 173 KNAGNQ 178 (243)
Q Consensus 173 r~ag~q 178 (243)
..--+.
T Consensus 81 ~~~E~r 86 (201)
T PF12072_consen 81 QRLEKR 86 (201)
T ss_pred HHHHHH
Confidence 554443
No 124
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=31.17 E-value=8e+02 Score=27.57 Aligned_cols=107 Identities=17% Similarity=0.234 Sum_probs=74.4
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH----HHHhhHHHHHHhhcc
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY----KVETQAADLMEGLRE 202 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~y----K~E~~A~gL~d~Lr~ 202 (243)
|.-+..-+...-.|+.+.--+..|.++|++-.+.+|++.+-..+.|-+....+.-++.... .|=+.-..|.|.--
T Consensus 98 Eddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~- 176 (1265)
T KOG0976|consen 98 EDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNE- 176 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh-
Confidence 4445566778889999999999999999999999999888888877777666655544322 22222233333222
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026138 203 IPGREALKLRAEVASMASLLKRQRAMMDKQIMKISE 238 (243)
Q Consensus 203 lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~ 238 (243)
+--.|+.|.-...++...+.+.|..-+.|.-+
T Consensus 177 ----~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e 208 (1265)
T KOG0976|consen 177 ----ELNEFNMEFQTKLAEANREKKALEEKLEKFKE 208 (1265)
T ss_pred ----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568888888888888888887766666543
No 125
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=30.89 E-value=5e+02 Score=25.13 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=68.6
Q ss_pred hhhHHHHHHHhHhhccchhHHHHHHhhhhhccH-HHHHHHHH--------------HhHHHHHHhHHhhHHHHHHHHHHH
Q 026138 94 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRAE--------------KNVNELNLSGELMKKESKKLLERA 158 (243)
Q Consensus 94 ~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SE-Eall~~Ae--------------~~v~eL~~svdl~k~Es~KL~era 158 (243)
++..|++++..++++|-+=+..|.+.+.-+..+ ...++... .+.+.|+..+..+.+...+|+-.+
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999998777666555433322 11222111 345788888888888889999999
Q ss_pred HHHHHHHhhhH---HHHHHhHHHHHHHHHHHHHHHh
Q 026138 159 ALAEKEMIRGE---TELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 159 a~AE~E~~RGr---tkLr~ag~qiq~l~ss~yK~E~ 191 (243)
.-+--|+-.|+ .+|+.-.+-++++...+..+..
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~ 314 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSS 314 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5677766777777666655544
No 126
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=30.61 E-value=33 Score=27.20 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=22.9
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKK 153 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~K 153 (243)
-||+|+...+||++.|+..|+++++
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 127
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=30.50 E-value=6.3e+02 Score=26.15 Aligned_cols=98 Identities=21% Similarity=0.311 Sum_probs=54.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhh----hH------------------------HHHHHhHHHHHHHHH
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIR----GE------------------------TELKNAGNQVQRLAK 184 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~R----Gr------------------------tkLr~ag~qiq~l~s 184 (243)
...++..|+..++.+..|..+|++.....|.++.+ |. ..|..-..+.+.|..
T Consensus 501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~ 580 (722)
T PF05557_consen 501 LSEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLA 580 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888888888888888888888877765 43 333333444455555
Q ss_pred HHHHHHhhHHHHHHhh----ccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 185 QVYKVETQAADLMEGL----REIPGREALKLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 185 s~yK~E~~A~gL~d~L----r~lPsreA~~LRaeVAs~as~lk~qR~aL~ 230 (243)
.+-.+|.-...-.+.. ...+.++-..|+.+|++.--...+-+-+..
T Consensus 581 ~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~ 630 (722)
T PF05557_consen 581 RLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFK 630 (722)
T ss_dssp HHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443322211111 123445667788888876544444444443
No 128
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=30.46 E-value=6.3e+02 Score=26.18 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=25.6
Q ss_pred HHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026138 188 KVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKISE 238 (243)
Q Consensus 188 K~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~ 238 (243)
.++++...+...+..+|..+. |...+..+++..|...+.-+.|.-+
T Consensus 350 ~L~~~~~~l~~~~~~~p~~e~-----~~~~L~R~~~~~~~lY~~lL~r~~e 395 (726)
T PRK09841 350 TLEQERKRLNKRVSAMPSTQQ-----EVLRLSRDVEAGRAVYLQLLNRQQE 395 (726)
T ss_pred HHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777643 3333455555555555555554443
No 129
>PHA02699 hypothetical protein; Provisional
Probab=30.34 E-value=5.9e+02 Score=25.81 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=27.5
Q ss_pred cCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026138 202 EIPGREALK-LRAEVASMASLLKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 202 ~lPsreA~~-LRaeVAs~as~lk~qR~aL~k~i~KIs~~GV~ 242 (243)
.||+-|.++ |=-+. ---|+...+|+.|-++|+-|+-.|++
T Consensus 416 ~lp~ce~ierfi~~~-~c~s~a~~~r~~lvqrl~~lag~g~r 456 (466)
T PHA02699 416 TLPRCECIEKFIHHM-VCNSEAGIERNELVQRLTMIAGAGYR 456 (466)
T ss_pred cCCcchHHHHHHHHH-HhcchhhhhHHHHHHHHHHHhcCceE
Confidence 367766543 11111 34577789999999999999988764
No 130
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.31 E-value=8.4e+02 Score=27.56 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=14.1
Q ss_pred HHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhH
Q 026138 161 AEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 193 (243)
Q Consensus 161 AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A 193 (243)
.++++..-.+..+.....+..+-+.|-..+.+-
T Consensus 356 ~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 356 LKEEIREIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444
No 131
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.14 E-value=1.9e+02 Score=23.18 Aligned_cols=28 Identities=7% Similarity=-0.001 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLL 155 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~ 155 (243)
.-+...+++-+.|+..|+.++.....++
T Consensus 41 ~e~~~l~~~n~~L~~eI~~L~~~~dyiE 68 (105)
T PRK00888 41 QTNAKLKARNDQLFAEIDDLKGGQEAIE 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 3333344444444444444444333333
No 132
>PRK14157 heat shock protein GrpE; Provisional
Probab=30.12 E-value=4.4e+02 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=24.8
Q ss_pred HHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 164 EMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 164 E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
.++|-..++-|-.+..++-.. .-|.+++-+..|+..|..|=..
T Consensus 99 ~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlDnLeRA 143 (227)
T PRK14157 99 ALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALDDIDRI 143 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 334444444444444433332 3466888889998888877554
No 133
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=30.10 E-value=4e+02 Score=24.71 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 147 ~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
++..++++.+++...+++......+|+..=++|..+-..+-.+-..+..|-..|+
T Consensus 11 l~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 11 LKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555555544443333333333344444444444444
No 134
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.96 E-value=2.4e+02 Score=25.54 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh----hHHHHHHhHHHHHHHHH
Q 026138 147 MKKESKKLLERAALAEKEMIR----GETELKNAGNQVQRLAK 184 (243)
Q Consensus 147 ~k~Es~KL~eraa~AE~E~~R----GrtkLr~ag~qiq~l~s 184 (243)
|+.|+..|.+.+.-+|.+-.+ +..+..-..+|+..|..
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHH
Confidence 455666666666666665555 45556666666666654
No 135
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.91 E-value=8.7e+02 Score=27.61 Aligned_cols=153 Identities=18% Similarity=0.262 Sum_probs=92.2
Q ss_pred HHHhHHHHHHHH------HHHHHHHHhhcch--hhH-------HHHHHHhHhhccchhHHHHHHhhhhhccH----HHHH
Q 026138 70 QYQTYEDAFFSK------VKDELVSAREHPA--AAT-------GVALTAGLLFMRGPRRFLFRHTFGRLRSE----EAMF 130 (243)
Q Consensus 70 qy~~yEd~~f~k------iK~gv~~A~~hP~--~~~-------g~a~~ag~lll~gpRrfL~r~Tlgrf~SE----Eall 130 (243)
+|...=..+|++ +..++.+|+.|.. ||. -.+.++|+.=-++.|==|..+ +.+|++| +.-|
T Consensus 609 ~fdka~k~Vfgktivcrdl~qa~~~ak~~~ln~ITl~GDqvskkG~lTgGy~D~krsrLe~~k~-~~~~~~~~~~l~~~L 687 (1200)
T KOG0964|consen 609 QFDKALKHVFGKTIVCRDLEQALRLAKKHELNCITLSGDQVSKKGVLTGGYEDQKRSRLELLKN-VNESRSELKELQESL 687 (1200)
T ss_pred hhHHHHHHHhCceEEeccHHHHHHHHHhcCCCeEEeccceecccCCccccchhhhhhHHHHHhh-hHHHHHHHHHHHHHH
Confidence 344444456777 6889999999954 332 235677787777777666544 4667666 2345
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHH--------------HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLL--------------ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADL 196 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~--------------eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL 196 (243)
.-|...+++..+.|+.+.++.++++ +.+...-.|..+=...|.--+++|..+--+..+.+.+...+
T Consensus 688 ~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~ 767 (1200)
T KOG0964|consen 688 DEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYF 767 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5677788888888888877777765 23333334444444445555566666666666666666665
Q ss_pred HHhhc-----cCCch---HHHHHHHHHHHHHHHHH
Q 026138 197 MEGLR-----EIPGR---EALKLRAEVASMASLLK 223 (243)
Q Consensus 197 ~d~Lr-----~lPsr---eA~~LRaeVAs~as~lk 223 (243)
...|. +|... ....|+-||..|.-.+.
T Consensus 768 e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~ 802 (1200)
T KOG0964|consen 768 ESELGSELFSQLTPEELERLSKLNKEINKLSVKLR 802 (1200)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 55443 22222 44556666666655544
No 136
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.62 E-value=7.1e+02 Score=26.47 Aligned_cols=14 Identities=14% Similarity=0.491 Sum_probs=8.9
Q ss_pred HHhhHHHHHHhhcc
Q 026138 189 VETQAADLMEGLRE 202 (243)
Q Consensus 189 ~E~~A~gL~d~Lr~ 202 (243)
..+++..++..|++
T Consensus 577 a~~~~~~~i~~lk~ 590 (771)
T TIGR01069 577 LKKEVESIIRELKE 590 (771)
T ss_pred HHHHHHHHHHHHHh
Confidence 34566677777765
No 137
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.41 E-value=3.7e+02 Score=23.19 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=67.0
Q ss_pred HHHHHHHhHhhHHHH------HhhhhhhccChHHHHHHHHHHHHHHHHHHh---HHHHHHH----HHHHHHH-HHhhcch
Q 026138 29 EDLQRSVIQSKDSAI------RSARSFQHNSSTYLQTLQDFVLHGVSQYQT---YEDAFFS----KVKDELV-SAREHPA 94 (243)
Q Consensus 29 e~~qkt~~~s~Dsai------~~a~si~~tS~~~~~~~~~~l~~~~sqy~~---yEd~~f~----kiK~gv~-~A~~hP~ 94 (243)
...++++++.+++.. +.-+.|...|.....+++++.+-+..+.+. .=+.++. +|.+.+. +-..||.
T Consensus 6 ~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pe 85 (155)
T PF07464_consen 6 QEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPE 85 (155)
T ss_dssp HHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 345555555555554 344458888999999999888888888776 2222333 3333333 2224565
Q ss_pred hhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 026138 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 174 (243)
Q Consensus 95 ~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ 174 (243)
+. ..|..=-..|+..++.+-.|++|+-+.+.- ++..
T Consensus 86 v~----------------------------------~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~----------~~~~ 121 (155)
T PF07464_consen 86 VE----------------------------------KQANELQEKLQSAVQSLVQESQKLAKEVSE----------NSEG 121 (155)
T ss_dssp HH----------------------------------HT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-------------S
T ss_pred HH----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHh
Confidence 43 333333455666777777777777665532 3445
Q ss_pred hHHHHHHHHHHHHHH
Q 026138 175 AGNQVQRLAKQVYKV 189 (243)
Q Consensus 175 ag~qiq~l~ss~yK~ 189 (243)
+...|+..++.+|.+
T Consensus 122 ~~e~l~~~~K~~~D~ 136 (155)
T PF07464_consen 122 ANEKLQPAIKQAYDD 136 (155)
T ss_dssp S-GGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 666677777777765
No 138
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=29.30 E-value=4.1e+02 Score=23.68 Aligned_cols=53 Identities=17% Similarity=0.265 Sum_probs=30.1
Q ss_pred HHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 026138 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 153 (243)
Q Consensus 101 ~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~K 153 (243)
+...++++--=++|||.-..+-+..=+.-+...-...++.+..++.+..|.+.
T Consensus 12 iInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~ 64 (246)
T TIGR03321 12 LINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEE 64 (246)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566789998877776655555555444444444444444444443
No 139
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=29.27 E-value=3.4e+02 Score=24.92 Aligned_cols=32 Identities=34% Similarity=0.367 Sum_probs=24.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E 164 (243)
|+..|..|+..|.+++-|+.+.++|+..|-.-
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~K 33 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQK 33 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887777766543
No 140
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=29.21 E-value=46 Score=29.27 Aligned_cols=31 Identities=29% Similarity=0.431 Sum_probs=25.9
Q ss_pred hhhHHHHHHHhHhhccchhHH------HHHHhhhhhc
Q 026138 94 AAATGVALTAGLLFMRGPRRF------LFRHTFGRLR 124 (243)
Q Consensus 94 ~~~~g~a~~ag~lll~gpRrf------L~r~Tlgrf~ 124 (243)
+++.|.++.+++-.|||.|.+ .--.|+|||-
T Consensus 7 ~~~~g~~~~la~s~lpgsralk~~dcevci~~l~rf~ 43 (178)
T KOG4154|consen 7 VATIGFAARLALSSLPGSRALKEEDCEVCIKTLGRFA 43 (178)
T ss_pred HHHHHHHHHHHHHhCCccccCCcccchHHHHHHHHHH
Confidence 568899999999999999986 4567888883
No 141
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=28.63 E-value=6.8e+02 Score=26.98 Aligned_cols=106 Identities=24% Similarity=0.305 Sum_probs=66.6
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 209 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~ 209 (243)
+..+......++...+-+..+.+.|++-+ -+..|+.|....+..++....++.. .=+.+.++..|-.. ++=-.++..
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E-~er~~~El~ 131 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAE-RERLQRELE 131 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHH-HHHHHHHHH
Confidence 34444444444444555666666666776 6777777777777777777776666 55666666666554 233345777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Q 026138 210 KLRAEVASMASLLKRQRAMMD---KQIMKISE 238 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~aL~---k~i~KIs~ 238 (243)
.||..+-.+-..+-+++..|+ ..|.|+.+
T Consensus 132 ~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e 163 (775)
T PF10174_consen 132 RLRKTLEELQLRIETQQQTLDKADEEIEKLQE 163 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777666666555 45555544
No 142
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=28.56 E-value=8.2e+02 Score=26.91 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=24.0
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~ 165 (243)
.....-+..+..++..++.++..+..+..+...+......++.++
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1163)
T COG1196 674 EELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQL 718 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666666555555555554444444433
No 143
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.51 E-value=3.6e+02 Score=22.68 Aligned_cols=39 Identities=13% Similarity=-0.057 Sum_probs=18.1
Q ss_pred hhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhH
Q 026138 106 LFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSG 144 (243)
Q Consensus 106 lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~sv 144 (243)
+++--=..|||+....-+..=..-+...-...++++..+
T Consensus 31 Il~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea 69 (174)
T PRK07352 31 IVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQA 69 (174)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344568887765555443333333333333333333
No 144
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=28.41 E-value=2.8e+02 Score=21.50 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHH
Q 026138 55 TYLQTLQDFVLHGVSQYQTYEDAFFS--KVKDELVSA 89 (243)
Q Consensus 55 ~~~~~~~~~l~~~~sqy~~yEd~~f~--kiK~gv~~A 89 (243)
..|++++.-+..+..+...+|...=+ .+.+.+...
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34566666666666666666655432 244555444
No 145
>PF04698 Rab_eff_C: Rab effector MyRIP/melanophilin C-terminus; InterPro: IPR006788 MOBP is abundantly expressed in central nervous system myelin, and shares several characteristics with myelin basic protein (MBP), in terms of regional distribution and function. MOBP has been shown to be essential for normal arrangement of the radial component in central nervous system myelin [, ].
Probab=28.35 E-value=1.4e+02 Score=31.94 Aligned_cols=73 Identities=30% Similarity=0.434 Sum_probs=58.1
Q ss_pred HHHHhHHHHHHH-------HHHHHHHHhhHHHHHHhhccCCch----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 026138 171 ELKNAGNQVQRL-------AKQVYKVETQAADLMEGLREIPGR----EALKLRAEVASMASLLKR---QRAMMDKQIMKI 236 (243)
Q Consensus 171 kLr~ag~qiq~l-------~ss~yK~E~~A~gL~d~Lr~lPsr----eA~~LRaeVAs~as~lk~---qR~aL~k~i~KI 236 (243)
+=+.-..|+++| +..+|..|.+-.+|-+--|.|++. |=++|--+||+.|++|.+ +.+-+..+|.-+
T Consensus 541 d~~~ldeq~~~le~~vy~~ag~~y~le~~l~~le~~a~~~~~~t~d~el~~le~~va~aaa~vq~~e~~~s~i~~ri~al 620 (714)
T PF04698_consen 541 DPRRLDEQLTKLEENVYLAAGKVYGLEKQLRDLEECARQIHSGTTDSELSELEDQVASAAAQVQQAESEVSDIESRIAAL 620 (714)
T ss_pred chHHHHHHHHHHHHHHhhcccceeecccchhHHHHhhhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334555678887 456678899999999999988876 778999999999999876 566777888888
Q ss_pred hhcCCCC
Q 026138 237 SELGVSV 243 (243)
Q Consensus 237 s~~GV~V 243 (243)
...|..|
T Consensus 621 ~~agl~v 627 (714)
T PF04698_consen 621 SAAGLNV 627 (714)
T ss_pred HhcCcee
Confidence 8888765
No 146
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=28.30 E-value=9.7e+02 Score=27.62 Aligned_cols=85 Identities=20% Similarity=0.282 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 026138 155 LERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQ--RAMMDKQ 232 (243)
Q Consensus 155 ~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~q--R~aL~k~ 232 (243)
..++....+.++.+.+.|......|.++=...-..|+.-..+....+.+-+. --.+|.+|..+-+.+... |+-+.+.
T Consensus 527 k~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~-~~~~rqrveE~ks~~~~~~s~~kVl~a 605 (1293)
T KOG0996|consen 527 KGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQ-LNKLRQRVEEAKSSLSSSRSRNKVLDA 605 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 3444445555555555555555555554444444444444444444444332 234566666665544443 4556778
Q ss_pred HHHHhhcC
Q 026138 233 IMKISELG 240 (243)
Q Consensus 233 i~KIs~~G 240 (243)
|++.-+.|
T Consensus 606 l~r~kesG 613 (1293)
T KOG0996|consen 606 LMRLKESG 613 (1293)
T ss_pred HHHHHHcC
Confidence 88888877
No 147
>PRK14144 heat shock protein GrpE; Provisional
Probab=28.23 E-value=4.5e+02 Score=23.71 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=35.3
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 138 ~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
..+...++.+++|...|.++..-+..||. +-.+-.++-.. .-|.+++-+..|++.+..|=..
T Consensus 48 ~~l~~~i~~le~e~~elkdk~lR~~Aefe-------N~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 111 (199)
T PRK14144 48 TALEEQLTLAEQKAHENWEKSVRALAELE-------NVRRRMEREVANAHKYGVEKLISALLPVVDSLEQA 111 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 34444555555555555555544444443 44333333322 3477888899998888777554
No 148
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=28.04 E-value=3.1e+02 Score=21.85 Aligned_cols=56 Identities=7% Similarity=0.009 Sum_probs=30.6
Q ss_pred HHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 026138 97 TGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 152 (243)
Q Consensus 97 ~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~ 152 (243)
.+.-+...++++--=.+|||.-..+-+..=+..+...-.+.++++...+.+..+.+
T Consensus 8 ~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e 63 (140)
T PRK07353 8 LPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYE 63 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555678888776666655555555544444444444444444443
No 149
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=27.47 E-value=1.2e+02 Score=24.80 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHH
Q 026138 155 LERAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (243)
Q Consensus 155 ~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss 185 (243)
-+|+..|...+++-.-.|+.+|.+|++.+..
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777788888888899999999887754
No 150
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=27.45 E-value=4.9e+02 Score=23.93 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=59.0
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH-------HhhHHHHHHhhc
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV-------ETQAADLMEGLR 201 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~-------E~~A~gL~d~Lr 201 (243)
+--.|++++++--.+.--.-+++....+|+-+||.....=--.|+.-+..+.+|..+.=+. |..-.-|.|.|+
T Consensus 75 iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLk 154 (205)
T KOG1003|consen 75 IAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLK 154 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 4456788999988889999999999999999999999888888888888888887665544 445555566555
Q ss_pred c
Q 026138 202 E 202 (243)
Q Consensus 202 ~ 202 (243)
+
T Consensus 155 E 155 (205)
T KOG1003|consen 155 E 155 (205)
T ss_pred h
Confidence 4
No 151
>PRK14141 heat shock protein GrpE; Provisional
Probab=27.24 E-value=4.7e+02 Score=23.67 Aligned_cols=53 Identities=21% Similarity=0.257 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 154 LLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 154 L~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
|++.+......|.|-..++-+-.+..++-.. ..|.+++-+..|+..+..|=..
T Consensus 43 le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViDnLerA 97 (209)
T PRK14141 43 LKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSDNLRRA 97 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHH
Confidence 3333333334444555555555544444433 4578899999999888877554
No 152
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=26.87 E-value=2.8e+02 Score=20.96 Aligned_cols=60 Identities=17% Similarity=0.100 Sum_probs=49.8
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E 190 (243)
..-+.+|..|=.-.+.++.|=..|..+....+.|=-.=..|.-.|...|..+|++.=.+|
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 455778888888888889999999888888888877778888889999999998876665
No 153
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.69 E-value=5.6e+02 Score=24.33 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=57.4
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHH
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLR 212 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LR 212 (243)
|.=+|.=|++.++... |.++..+....++.+.....-+|.....++..+-...-..|...+.+.+.+.
T Consensus 164 a~vkV~WLR~~L~Ei~-Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~----------- 231 (269)
T PF05278_consen 164 AKVKVDWLRSKLEEIL-EAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERIT----------- 231 (269)
T ss_pred cCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3344555555555543 4445555566666666667777777777777777777777777777777663
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 213 AEVASMASLLKRQRAMMDKQIMKI 236 (243)
Q Consensus 213 aeVAs~as~lk~qR~aL~k~i~KI 236 (243)
++..-.++++..|.-|.+.|..+
T Consensus 232 -e~~~rl~~l~~~~~~l~k~~~~~ 254 (269)
T PF05278_consen 232 -EMKGRLGELEMESTRLSKTIKSI 254 (269)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666665544
No 154
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=26.59 E-value=2.1e+02 Score=26.12 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH----HHHHHHHHhh
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL----AKQVYKVETQ 192 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l----~ss~yK~E~~ 192 (243)
.+..|++.+++-...-+-- .|.++|++.+-+|..||-|-.+ ..+-|.++ .+++||-+|.
T Consensus 14 ~Ye~A~~~Ye~av~ng~~~-q~~Kql~KA~NIAKse~drdaa----vqkKLerMAe~Am~~MYkeaRa 76 (199)
T PF08717_consen 14 AYETARQAYEEAVANGSSP-QELKQLKKAMNIAKSEFDRDAA----VQKKLERMAEQAMTQMYKEARA 76 (199)
T ss_dssp HHHHHHHHHHHHHHCT--H-HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCHCHH
T ss_pred HHHHHHHHHHHHHHcCCCH-HHHHHHHHHHhHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777776665544444 7889999999999999988764 34455555 4566776654
No 155
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.02 E-value=3.2e+02 Score=21.34 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
|.|=..+..++.+|...+..+...++.|..+- ++|+.=..+|-+-..++..|...+|..+.-...|=..++
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667778888999999988888888887765 445555556666666677777666666665555544433
No 156
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=25.92 E-value=3.7e+02 Score=21.96 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=24.7
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHH
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLA 183 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ 183 (243)
..+..|+..++.+..|+.-++.+...++.++..-..+++....+++++-
T Consensus 73 ~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 73 NDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555555555555555555555555553
No 157
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=25.84 E-value=2.7e+02 Score=20.37 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=11.8
Q ss_pred hHHHHHHHhHhhccchhHHH
Q 026138 96 ATGVALTAGLLFMRGPRRFL 115 (243)
Q Consensus 96 ~~g~a~~ag~lll~gpRrfL 115 (243)
.+++++++|+|+-|.+.+=+
T Consensus 8 Ga~~Ga~~glL~aP~sG~e~ 27 (74)
T PF12732_consen 8 GAAAGAAAGLLFAPKSGKET 27 (74)
T ss_pred HHHHHHHHHHHhCCCCcHHH
Confidence 34555666777777665433
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.60 E-value=4.9e+02 Score=23.33 Aligned_cols=111 Identities=18% Similarity=0.236 Sum_probs=71.0
Q ss_pred HHHhhhhhccH-HHHHHHHHHhH-HHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhH
Q 026138 116 FRHTFGRLRSE-EAMFVRAEKNV-NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 193 (243)
Q Consensus 116 ~r~Tlgrf~SE-Eall~~Ae~~v-~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A 193 (243)
+-..+...+.+ +.++..-...+ .-++..++.++..+.+-.+.+..+..|+..=+..+...-.+|.+|-...-..|++.
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 44444444433 33443333332 23556677777777777777888888888888888888888888888888888887
Q ss_pred HHHHHhhccCCch---HHHHHHHHHHHHHHHHHHHH
Q 026138 194 ADLMEGLREIPGR---EALKLRAEVASMASLLKRQR 226 (243)
Q Consensus 194 ~gL~d~Lr~lPsr---eA~~LRaeVAs~as~lk~qR 226 (243)
..|-..+..--.. .-..+.+|++.+-.++.++-
T Consensus 247 ~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 247 RELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 7776555432222 34466667777666665554
No 159
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.27 E-value=3.5e+02 Score=21.45 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH---HhhhHHHHHHhHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE---MIRGETELKNAGNQVQRL 182 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E---~~RGrtkLr~ag~qiq~l 182 (243)
.+|..-+.||...=.+|.+++-|+.-|.+.-.....| ...||..|.+.-.|++.-
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E 61 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3678888999999999999999999998775555554 556888888888888754
No 160
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=25.12 E-value=7.3e+02 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026138 210 KLRAEVASMASLLKRQRAMMDKQIMKISE 238 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~aL~k~i~KIs~ 238 (243)
+...++..+-.++...+....+.|.+|+.
T Consensus 115 ~re~eLee~~~e~~~~~~~~~~~le~~a~ 143 (514)
T TIGR03319 115 NKEKNLDEKEEELEELIAEQREELERISG 143 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344555555555555555555666554
No 161
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=24.85 E-value=8.6e+02 Score=25.86 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=13.4
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHH
Q 026138 122 RLRSEEAMFVRAEKNVNELNLSGE 145 (243)
Q Consensus 122 rf~SEEall~~Ae~~v~eL~~svd 145 (243)
|+-=++.++.+|..-..+....++
T Consensus 491 ~~Glp~~ii~~A~~~~~~~~~~~~ 514 (771)
T TIGR01069 491 RYGIPHFIIEQAKTFYGEFKEEIN 514 (771)
T ss_pred HhCcCHHHHHHHHHHHHhhHHHHH
Confidence 333456677777766555544443
No 162
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=24.63 E-value=3.3e+02 Score=20.92 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=18.7
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAAL 160 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~ 160 (243)
+-....+...+...+|.++++...+-..+..
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~ 61 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGK 61 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344556666667777777766666555443
No 163
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=24.63 E-value=2.8e+02 Score=26.29 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=38.2
Q ss_pred HhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh
Q 026138 118 HTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA 175 (243)
Q Consensus 118 ~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~a 175 (243)
+.+-+|++.+++... ..++-.-+..+++++++|.+.+.-|.++|++=+.+....
T Consensus 189 ~~~~~~~~~~~~~~~----~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 189 NDIDKFQEREDEKIL----HEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred chhhhhhhhhhHHHH----HHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 335678777766443 344555566688899999999999999998877665443
No 164
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=24.61 E-value=1.9e+02 Score=20.50 Aligned_cols=27 Identities=26% Similarity=0.403 Sum_probs=14.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKL 154 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL 154 (243)
.-+..-+.+.+.++...+.++.|.++|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555555555
No 165
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=24.58 E-value=5.1e+02 Score=27.75 Aligned_cols=81 Identities=22% Similarity=0.166 Sum_probs=57.7
Q ss_pred hccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 026138 123 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 202 (243)
Q Consensus 123 f~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~ 202 (243)
+..||.|+.-.-.+=..|...|..+.+|++.+.-.+.-...|--| -....+.+-...--.|.+-..|.+++++
T Consensus 15 ~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~r-------l~~~~~~~~~~~~~~e~~~~~lr~e~ke 87 (717)
T PF09730_consen 15 EEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENER-------LSQLNQELRKECEDLELERKRLREEIKE 87 (717)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999998888899999999999888776544444333333 2333344444555677888889999999
Q ss_pred CCchHHHH
Q 026138 203 IPGREALK 210 (243)
Q Consensus 203 lPsreA~~ 210 (243)
+..||+--
T Consensus 88 ~K~rE~rl 95 (717)
T PF09730_consen 88 YKFREARL 95 (717)
T ss_pred HHHHHHHH
Confidence 98888743
No 166
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.45 E-value=4.1e+02 Score=26.28 Aligned_cols=23 Identities=22% Similarity=0.436 Sum_probs=15.5
Q ss_pred HHhHh-hccchhHHHHHHhhhhhcc
Q 026138 102 TAGLL-FMRGPRRFLFRHTFGRLRS 125 (243)
Q Consensus 102 ~ag~l-ll~gpRrfL~r~Tlgrf~S 125 (243)
..|++ +||+-+ +|||.++++|.=
T Consensus 167 ~f~~fAl~r~lk-~lyR~~l~~L~l 190 (362)
T KOG3875|consen 167 FFGIFALFRRLK-ILYRLLLKMLKL 190 (362)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 33444 444444 999999999963
No 167
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=24.41 E-value=4.4e+02 Score=26.26 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=20.2
Q ss_pred HHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 173 KNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 173 r~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
...+++|..+-.++-|+|.|+.+ +|+..
T Consensus 339 ~~~~k~~~~~~~~i~k~~~q~~~-ke~nk 366 (391)
T smart00435 339 EKKKKQIERLEERIEKLEVQATD-KEENK 366 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhcCe
Confidence 34567888888888888888765 44443
No 168
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=24.36 E-value=1.5e+02 Score=21.39 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.4
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHH
Q 026138 137 VNELNLSGELMKKESKKLLERAAL 160 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~ 160 (243)
|+.|++-|+.+.++.+.|+...+.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~ 24 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQ 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999887764
No 169
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.35 E-value=5.5e+02 Score=23.44 Aligned_cols=90 Identities=19% Similarity=0.249 Sum_probs=50.2
Q ss_pred HhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 026138 118 HTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 197 (243)
Q Consensus 118 ~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~ 197 (243)
..+.-+.+|+..+....+..+.|.+.=..+-.|++-...-.-.=|..++.-++.....-..|+++-......-.....+.
T Consensus 22 ~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 22 QEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777777777777777766666666666555555555555555555555555555554444444444444443
Q ss_pred Hh---hccCCchH
Q 026138 198 EG---LREIPGRE 207 (243)
Q Consensus 198 d~---Lr~lPsre 207 (243)
-. |..||.-+
T Consensus 102 ~e~lgl~~Lp~l~ 114 (230)
T PF10146_consen 102 KEYLGLEPLPSLE 114 (230)
T ss_pred HHHcCCCCCCccc
Confidence 33 34444443
No 170
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.17 E-value=6.3e+02 Score=24.07 Aligned_cols=71 Identities=24% Similarity=0.254 Sum_probs=44.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
-....++++...+-+.+|-.-|.++.---|.++--|+-.|+.-..+.-+|---.-+.+-..-.|.+.+.+|
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 34456677777777777777777777777777777777776666665555444444444444444444443
No 171
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=24.13 E-value=2.4e+02 Score=20.38 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.3
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERA 158 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~era 158 (243)
+...|+.+..+-+..|+.++.+++++..+.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 488888888999999999999888886543
No 172
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.12 E-value=3.7e+02 Score=21.33 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkL 172 (243)
++=.+...-.|.+|.-.+|.|.++..-+......|.+|--|.-..|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 5677788888899999999999998888888888877766655444
No 173
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=23.97 E-value=3.1e+02 Score=20.42 Aligned_cols=91 Identities=18% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHHhhhhhccHHHHHH
Q 026138 55 TYLQTLQDFVLHGVSQYQTYEDAFFSKV---KDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFV 131 (243)
Q Consensus 55 ~~~~~~~~~l~~~~sqy~~yEd~~f~ki---K~gv~~A~~hP~~~~g~a~~ag~lll~gpRrfL~r~Tlgrf~SEEall~ 131 (243)
..|..+..-+..+..+....+... ..+ .+.|....+. ..+ =-..|-+|++.|+ +.+..
T Consensus 5 ~~~~~l~~~l~~~~~q~~~l~~~~-~~~~~~~~eL~~l~~~--~~~--y~~vG~~fv~~~~--------------~~~~~ 65 (106)
T PF01920_consen 5 NKFQELNQQLQQLEQQIQQLERQL-RELELTLEELEKLDDD--RKV--YKSVGKMFVKQDK--------------EEAIE 65 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSTT---EE--EEEETTEEEEEEH--------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc--chh--HHHHhHHHHHhhH--------------HHHHH
Confidence 457777777777777777776655 233 3333333222 111 1122334444444 44555
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E 164 (243)
.-+.+.+.+...++.+++..+.+.+++.-.++.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666665655555555555555444443
No 174
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.92 E-value=4.4e+02 Score=22.18 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 026138 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (243)
Q Consensus 124 ~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~ 165 (243)
.+.+++-..-+++++.++..|+.+.+--.+|+..++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788889999999999999999999999999999888644
No 175
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=23.92 E-value=5e+02 Score=24.34 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=46.1
Q ss_pred HhHhhHHHHHhhhh-hhccChHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh-------cchhhHHHHHH
Q 026138 35 VIQSKDSAIRSARS-FQHNSSTY-LQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSARE-------HPAAATGVALT 102 (243)
Q Consensus 35 ~~~s~Dsai~~a~s-i~~tS~~~-~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~-------hP~~~~g~a~~ 102 (243)
..|+.|-|.+.=.. +.+-=||+ |..+..-+.+++.+|...-..++|.||--++--.. --|.-||+++-
T Consensus 13 ai~tad~aldlynk~ldqvipw~tf~~tikelsrfk~eysq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~tq 89 (299)
T PF06109_consen 13 AIDTADKALDLYNKYLDQVIPWQTFNDTIKELSRFKQEYSQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTTQ 89 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHHH
Confidence 33444444443332 55555664 88888899999999999999999999987774433 34566777653
No 176
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=23.71 E-value=3.1e+02 Score=20.40 Aligned_cols=86 Identities=20% Similarity=0.231 Sum_probs=41.4
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREA 208 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA 208 (243)
++.....+.+++...+..+..-...+.+.+..++.+...--..|++. ++..-..|++.|...-...-
T Consensus 8 ~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~-------------L~~~e~~ll~~l~~~~~~~~ 74 (127)
T smart00502 8 LLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNA-------------LNKRKKQLLEDLEEQKENKL 74 (127)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554444443333333322 34444455555555444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026138 209 LKLRAEVASMASLLKRQRA 227 (243)
Q Consensus 209 ~~LRaeVAs~as~lk~qR~ 227 (243)
..|..+...+-..+.+-+.
T Consensus 75 ~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 75 KVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444433
No 177
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.57 E-value=1.2e+03 Score=27.26 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhHhh------HHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHH-
Q 026138 24 AKEWVEDLQRSVIQSK------DSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK---------VKDELV- 87 (243)
Q Consensus 24 ~~~w~e~~qkt~~~s~------Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~k---------iK~gv~- 87 (243)
+.+|.|+.+.++++-+ |.|--.|.....--....+.+++.|..+..+-...|..++.. .-++|.
T Consensus 1554 a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~ 1633 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKH 1633 (1758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhcchhhHHHHHHHhHhhccchh-HHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 026138 88 SAREHPAAATGVALTAGLLFMRGPR-RFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (243)
Q Consensus 88 ~A~~hP~~~~g~a~~ag~lll~gpR-rfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~ 166 (243)
-+..|-..+--...++|.......+ +=.++.----+.--+.|+.+--..+..-++.++.++.|.+||+-.+..-=.+|+
T Consensus 1634 ~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~ 1713 (1758)
T KOG0994|consen 1634 KAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLK 1713 (1758)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhcc
Q 026138 167 RGETELKNAGNQVQRLAKQVYKVETQAADLMEGLRE 202 (243)
Q Consensus 167 RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~ 202 (243)
.=..+.-+.-.+|-..+..+-..|+....+++++.+
T Consensus 1714 dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1714 DLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
No 178
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=23.38 E-value=1.6e+02 Score=28.45 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=40.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHH
Q 026138 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 171 (243)
Q Consensus 127 Eall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtk 171 (243)
.+-|+..+....+.+-+|+.++++..+|....+.++++..+=|+|
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 356899999999999999999999999999999999999887665
No 179
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.34 E-value=2.4e+02 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=31.1
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhh
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 167 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~R 167 (243)
++..++..|++.-..+++++..|+.+++.-+.++.+
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~ 212 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLER 212 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999998887776653
No 180
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=23.32 E-value=3.8e+02 Score=25.74 Aligned_cols=54 Identities=24% Similarity=0.306 Sum_probs=36.2
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 026138 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 134 e~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~ 191 (243)
..-.+.|++.++.+.+++.+|.++..... +=..++++.-.||.++-+.+-.++.
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~ 294 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEE 294 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777655544 5567788888888888777766554
No 181
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=23.29 E-value=3.5e+02 Score=20.85 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 026138 126 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (243)
Q Consensus 126 EEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~ 166 (243)
-+.-..-.+++.+.|+..++.+.+++.++.+....-+..|.
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 85 LEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777788888888888887777777666655554
No 182
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=23.25 E-value=8.5e+02 Score=25.26 Aligned_cols=65 Identities=12% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHH--HHHhHHHHHHHHHHHHHHHhhHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE--LKNAGNQVQRLAKQVYKVETQAADL 196 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtk--Lr~ag~qiq~l~ss~yK~E~~A~gL 196 (243)
..+.+......+++-+..++..+.+++..+|.++..=+.+ +-....+-+.+..++-..+.+-..|
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l 323 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNEL 323 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777788888888888888888888887665543 1222233344444444444444333
No 183
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=23.22 E-value=5.6e+02 Score=23.69 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=10.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhh
Q 026138 145 ELMKKESKKLLERAALAEKEMIR 167 (243)
Q Consensus 145 dl~k~Es~KL~eraa~AE~E~~R 167 (243)
..++.+.+..+..+..|+.+|.|
T Consensus 109 ~~~~~~l~~a~~~l~~a~~~~~r 131 (370)
T PRK11578 109 MELRAQRQQAEAELKLARVTLSR 131 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555544
No 184
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=23.09 E-value=7.4e+02 Score=26.28 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH-----------HHHHhhHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV-----------YKVETQAADLME 198 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~-----------yK~E~~A~gL~d 198 (243)
+..|..+-+.|.+-++.+-.-...-+-..+.||.+|.. +|+.-..+|+.|..++ ++++++...-.
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~---EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~- 677 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKK---ELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKK- 677 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-
Confidence 33444444444444443333333223335566766643 3444444455444333 33343332211
Q ss_pred hhccCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 199 GLREIPGREALKLRAEVASMASLLKRQRAMM 229 (243)
Q Consensus 199 ~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL 229 (243)
.=-.||..|=...++-...++.+.+...+.+
T Consensus 678 ~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~i 708 (717)
T PF10168_consen 678 KSIVLSESQKRTIKEILKQQGEEIDELVKQI 708 (717)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124666666666666666666665555443
No 185
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=23.04 E-value=89 Score=20.41 Aligned_cols=27 Identities=15% Similarity=0.448 Sum_probs=23.1
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHH
Q 026138 194 ADLMEGLREIPGREALKLRAEVASMAS 220 (243)
Q Consensus 194 ~gL~d~Lr~lPsreA~~LRaeVAs~as 220 (243)
-+|+..++.+|.++-..+|.+|..+.-
T Consensus 9 ~Sl~p~~k~L~~~~k~~~k~~i~~ll~ 35 (37)
T PF02944_consen 9 LSLLPHMKRLPPKQKLKFKMKILQLLF 35 (37)
T ss_pred HHhHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 467888999999999999999987643
No 186
>PRK14159 heat shock protein GrpE; Provisional
Probab=22.86 E-value=5.3e+02 Score=22.69 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 153 KLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMD 230 (243)
Q Consensus 153 KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~ 230 (243)
.|++.+.--...++|-..++-+..+-..+-.. .-|.+++-+..|+..+..|=..=...-..+. ..+-++.-..+..
T Consensus 34 ~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~~~~--~~~l~~Gv~mi~k 111 (176)
T PRK14159 34 KLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECHDEI--SLKIKEGVQNTLD 111 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccccch--HHHHHHHHHHHHH
Confidence 33333333344555555555555555544433 4567888999998888777553111001111 1223334444455
Q ss_pred HHHHHHhhcCCC
Q 026138 231 KQIMKISELGVS 242 (243)
Q Consensus 231 k~i~KIs~~GV~ 242 (243)
+-+.-..++||.
T Consensus 112 ~l~~vL~k~Gv~ 123 (176)
T PRK14159 112 LFLKKLEKHGVA 123 (176)
T ss_pred HHHHHHHHCcCE
Confidence 555555677774
No 187
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=22.80 E-value=6.2e+02 Score=23.47 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=28.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026138 169 ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKIS 237 (243)
Q Consensus 169 rtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs 237 (243)
+-.+++...+|..|-..+-+..++..+-.+ ..+|.. ..|...+..++.-.+..++..+.+.-
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~--~~l~~~-----~~~~~~L~re~~~a~~~y~~~l~r~~ 302 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQLSGGLG--DSLNEQ-----TADYQRLVLQNELAQQQLKAALTSLQ 302 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhhcCCC--ccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555444433333322111 123333 33555666666666666665555443
No 188
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.76 E-value=8e+02 Score=24.75 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=71.0
Q ss_pred hHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHHH
Q 026138 39 KDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRH 118 (243)
Q Consensus 39 ~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g~a~~ag~lll~gpRrfL~r~ 118 (243)
+|+-|+.=+||+.||.. +-..+|-+...++-...-|+.|=.-+|+.-..-+..-+ ....+++-.|.+-+-+|.-.|.
T Consensus 52 LDaklelf~Si~~T~l~-L~kiId~Yq~rl~~lSqeenvlGkfLkeqgkrdkT~ag--kmm~atgkal~fssqqrla~r~ 128 (436)
T KOG3891|consen 52 LDAKLELFHSIQRTCLD-LLKIIDLYQKRLCDLSQEENVLGKFLKEQGKRDKTEAG--KMMIATGKALCFSSQQRLALRI 128 (436)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh--hHHHHHhHHhhhhHHHHHHHhh
Confidence 57777778889988754 55666666666666665565544445664432222211 1234455567888999999999
Q ss_pred hhhhhccHHHHHH------------HHHHhHHHHHHhHHhhHHHHHHH
Q 026138 119 TFGRLRSEEAMFV------------RAEKNVNELNLSGELMKKESKKL 154 (243)
Q Consensus 119 Tlgrf~SEEall~------------~Ae~~v~eL~~svdl~k~Es~KL 154 (243)
-+.||..|=+.|. +-|+---|+|.+.-=||.=|+.|
T Consensus 129 pl~r~~~ev~vF~~RAI~Dt~qTi~~meq~RTEYRgaLlWMK~~SqEL 176 (436)
T KOG3891|consen 129 PLSRFYQEVSVFRERAISDTSQTINRMEQCRTEYRGALLWMKDVSQEL 176 (436)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 9999999987764 33333344555555555555554
No 189
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.68 E-value=92 Score=31.96 Aligned_cols=126 Identities=19% Similarity=0.190 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHHHHHHHHHHhhc----chhhHHHHHHHhHhhccchhHH-----HHHHhh
Q 026138 55 TYLQTLQDFVLHGVSQYQTYEDA-----FFSKVKDELVSAREH----PAAATGVALTAGLLFMRGPRRF-----LFRHTF 120 (243)
Q Consensus 55 ~~~~~~~~~l~~~~sqy~~yEd~-----~f~kiK~gv~~A~~h----P~~~~g~a~~ag~lll~gpRrf-----L~r~Tl 120 (243)
-|||..|..-|. ..+-||.. .|+++|++..+|..- |..+-.+...+..+.++.||-= +|-..|
T Consensus 355 IaFR~Aq~Lap~---rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 355 IAFRTAQMLAPY---RLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHhcchh---hHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 478888776654 44555554 588999999999864 5555444444457888888731 222221
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH--HHHhhhHHHHHHhHHHHHHHHHHHHH
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE--KEMIRGETELKNAGNQVQRLAKQVYK 188 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE--~E~~RGrtkLr~ag~qiq~l~ss~yK 188 (243)
.. +-.+-.|.-+..|| .++++-.++.-+|+++...-- .-+-+-......|-++.|.-.+.-|+
T Consensus 432 ~~----~P~Y~~AV~~~AEL-~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 432 KI----NPIYTPAVNLIAEL-CQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred cc----CCccHHHHHHHHHH-HHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 12234455555555 357777778888888765432 22334444555555666655554443
No 190
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.38 E-value=9e+02 Score=25.20 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=16.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCc
Q 026138 169 ETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG 205 (243)
Q Consensus 169 rtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPs 205 (243)
+..|..+.+++....--=...+.+...|+..|.-+-.
T Consensus 182 ~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~ 218 (546)
T KOG0977|consen 182 REELARARKQLDDETLLRVDLQNRVQTLLEELAFLKR 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3334444444444443344445555555555444433
No 191
>PRK12704 phosphodiesterase; Provisional
Probab=22.35 E-value=8.2e+02 Score=24.76 Aligned_cols=31 Identities=23% Similarity=0.241 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhHHHHH
Q 026138 150 ESKKLLERAALAEKEMIRGETELKNAGNQVQ 180 (243)
Q Consensus 150 Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq 180 (243)
++++.++++..-|+.+.+-.-+|..-..+|.
T Consensus 83 ~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 83 ELQKLEKRLLQKEENLDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333433333333333333433333333
No 192
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=22.03 E-value=53 Score=23.27 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=12.3
Q ss_pred hhcchhhHHHHHHHhHhh
Q 026138 90 REHPAAATGVALTAGLLF 107 (243)
Q Consensus 90 ~~hP~~~~g~a~~ag~ll 107 (243)
++||.+..|++.+++.+.
T Consensus 2 ke~plv~ig~~~~~~~l~ 19 (54)
T PF04588_consen 2 KENPLVPIGMLATVGALA 19 (54)
T ss_dssp -S--CHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 689999999888887754
No 193
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=21.73 E-value=2.2e+02 Score=21.77 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 026138 134 EKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (243)
Q Consensus 134 e~~v~eL~~svdl~k~Es~KL~eraa~AE~E~ 165 (243)
...++.|+..++.++.+...+.++...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888888888888888888877777654
No 194
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=21.55 E-value=4e+02 Score=26.28 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.3
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHH
Q 026138 134 EKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 134 e~~v~eL~~svdl~k~Es~KL~e 156 (243)
-++-+||+.++..++.|+.||.|
T Consensus 7 ~~kskE~~enik~l~~~~~~~~e 29 (378)
T TIGR00984 7 LQKSQELQESIKQLQDRSGKLNE 29 (378)
T ss_pred HHhhHHHHHHHHHHHHHHhhhhh
Confidence 36789999999999999999974
No 195
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.32 E-value=9e+02 Score=25.87 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=54.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhH---HHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG---NQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag---~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
|-+-++.++.+++-++.+..|.+-+......|+-+...-++++++.. ..|++++..+.++|+ |-+.|-.-|++
T Consensus 84 LVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieK----L~k~L~s~psk 159 (705)
T KOG2307|consen 84 LVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEK----LSKMLLSPPSK 159 (705)
T ss_pred hccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCCccc
Confidence 44556777777777777777777777777777777776677766655 456666766767765 88899999999
Q ss_pred H
Q 026138 207 E 207 (243)
Q Consensus 207 e 207 (243)
+
T Consensus 160 ~ 160 (705)
T KOG2307|consen 160 E 160 (705)
T ss_pred c
Confidence 8
No 196
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.32 E-value=1.2e+03 Score=26.86 Aligned_cols=65 Identities=26% Similarity=0.273 Sum_probs=33.7
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHH-HHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 026138 133 AEKNVNELNLSGELMKKESKKLL-ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 197 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~-eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~ 197 (243)
++.-.++|.+.++.++.+..-|+ +..+++..+++.-..++.....+++.|...+...+....++.
T Consensus 463 ~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q 528 (1317)
T KOG0612|consen 463 LEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQ 528 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566666666665555555 344555555555555555555555555444444444444443
No 197
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=21.25 E-value=6.3e+02 Score=23.01 Aligned_cols=56 Identities=16% Similarity=0.261 Sum_probs=42.7
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHhh----HHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH
Q 026138 166 IRGETELKNAGNQVQRLAKQVYKVETQ----AADLMEGLREIPGREALKLRAEVASMASLLKRQR 226 (243)
Q Consensus 166 ~RGrtkLr~ag~qiq~l~ss~yK~E~~----A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR 226 (243)
++=.-+|..+.++|.+| ..+|+++-+ ....+|.. ..+|..||.|+.+|+..+..-=
T Consensus 133 ~~Y~eqm~~aa~~l~~L-N~~Ye~QL~~as~q~~~~~~i----~~na~~fkeQ~~kLa~NL~sLN 192 (202)
T TIGR03513 133 KKYIEQMSSLAANMEGL-NTIYEAQLKGASSHADANNEI----AINSSSLKEEMEKMAANLTSLN 192 (202)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888888776 567888766 66666665 7899999999999999886543
No 198
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.16 E-value=6.4e+02 Score=25.40 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=42.8
Q ss_pred hhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhh
Q 026138 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 192 (243)
Q Consensus 121 grf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~ 192 (243)
.|+.+=..=+..-++++.+-++.-..+..+++.++.....-+.++++-..+|..-.++|..+-...-+.|.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333334445555555556666666666666666666666666666666666666666666666555543
No 199
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=21.09 E-value=6.9e+02 Score=23.36 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHh----h
Q 026138 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG----L 200 (243)
Q Consensus 125 SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~----L 200 (243)
|...+-+-+-++.++|+.-.+++=++..-++++.-.=|++.+.=.++|..|.+.++- +.++...+..+. |
T Consensus 33 s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~------~~~k~~~dF~~~Lq~~L 106 (230)
T PF03904_consen 33 SQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFID------KTEKVHNDFQDILQDEL 106 (230)
T ss_pred cHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 444455555568899999999999999999999999999999999999999988763 345555554433 3
Q ss_pred ccC--------CchHHHHHHHHHHHHHHHHHH
Q 026138 201 REI--------PGREALKLRAEVASMASLLKR 224 (243)
Q Consensus 201 r~l--------PsreA~~LRaeVAs~as~lk~ 224 (243)
..+ -.++=-++|.|--+|.-++|+
T Consensus 107 k~V~tde~k~~~~~ei~k~r~e~~~ml~evK~ 138 (230)
T PF03904_consen 107 KDVDTDELKNIAQNEIKKVREENKSMLQEVKQ 138 (230)
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 233334445555555555554
No 200
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.09 E-value=6.3e+02 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 026138 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA 159 (243)
Q Consensus 125 SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa 159 (243)
+.+..|..++++.+.|.....-|.+|+++-.+.+.
T Consensus 8 T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~ 42 (225)
T cd07590 8 TVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVL 42 (225)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777665543
No 201
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.05 E-value=4.5e+02 Score=28.02 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=53.0
Q ss_pred ccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 124 ~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
-.||+|+.-.-++-..+-+.|-.+.+|++++..-+.--..|. -.-.+.-+-+..+-..+|-+=..|.|.|++.
T Consensus 89 e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~-------erl~~~~sd~~e~~~~~E~qR~rlr~elKe~ 161 (772)
T KOG0999|consen 89 EREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEEN-------ERLEKVHSDLKESNAAVEDQRRRLRDELKEY 161 (772)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhcchhhHHHHHHHHHHHHHH
Confidence 458999999999999999999999999998864433222221 1112222333444445666777888888888
Q ss_pred CchHHH
Q 026138 204 PGREAL 209 (243)
Q Consensus 204 PsreA~ 209 (243)
.-|||-
T Consensus 162 KfRE~R 167 (772)
T KOG0999|consen 162 KFREAR 167 (772)
T ss_pred HHHHHH
Confidence 877763
No 202
>PLN03223 Polycystin cation channel protein; Provisional
Probab=21.02 E-value=2.1e+02 Score=33.19 Aligned_cols=54 Identities=22% Similarity=0.456 Sum_probs=44.3
Q ss_pred HHhhHHHHHHH---HHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 026138 144 GELMKKESKKL---LERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 197 (243)
Q Consensus 144 vdl~k~Es~KL---~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~ 197 (243)
+|.+.+|...| ++|+.-.+.++.-|+.|+.+-.+++-++-+.+...|.+--|++
T Consensus 1573 ~~~l~~e~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~k~~~~~ 1629 (1634)
T PLN03223 1573 GDVLEKEVDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLENKILGVL 1629 (1634)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHhhhcccc
Confidence 55666666666 5888999999999999999999999999888888887765554
No 203
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=20.91 E-value=3.2e+02 Score=21.92 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~ 166 (243)
+-+++|.+|...++.+..|...|..+...+.+|.+
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~ 80 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEKQ 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777777777766666665544
No 204
>PRK11519 tyrosine kinase; Provisional
Probab=20.71 E-value=9.5e+02 Score=24.88 Aligned_cols=48 Identities=13% Similarity=0.195 Sum_probs=24.9
Q ss_pred HHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026138 185 QVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKIS 237 (243)
Q Consensus 185 s~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~KIs 237 (243)
..-.++++-..+.+.+..+|..+. |...+..++...+...+.-+.|.-
T Consensus 347 ~~~~L~~~~~~l~~~~~~lp~~e~-----~~~~L~Re~~~~~~lY~~lL~r~~ 394 (719)
T PRK11519 347 KRKALEDEKAKLNGRVTAMPKTQQ-----EIVRLTRDVESGQQVYMQLLNKQQ 394 (719)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666777776643 333444444444444444444443
No 205
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.70 E-value=5.5e+02 Score=22.11 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 026138 208 ALKLRAEVASMASLLKRQRAMMDKQIMKISELGVS 242 (243)
Q Consensus 208 A~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~GV~ 242 (243)
...|..||+.+=..|..+|-.++.++.|. ||+
T Consensus 91 I~aL~kEI~~Lr~kL~e~r~~~~~~~~k~---Gv~ 122 (143)
T PRK11546 91 INAVAKEMENLRQSLDELRVKRDIAMAEA---GIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCC
Confidence 56788888888899999999999999986 876
No 206
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.61 E-value=1.4e+02 Score=21.02 Aligned_cols=9 Identities=22% Similarity=0.154 Sum_probs=3.7
Q ss_pred HHHHHHhHh
Q 026138 98 GVALTAGLL 106 (243)
Q Consensus 98 g~a~~ag~l 106 (243)
++++.+|++
T Consensus 29 ~~G~llg~l 37 (68)
T PF06305_consen 29 LLGALLGWL 37 (68)
T ss_pred HHHHHHHHH
Confidence 334444443
No 207
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=20.58 E-value=1.5e+02 Score=22.00 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred hHHHHHHhHHhhHHHHHHHHHH
Q 026138 136 NVNELNLSGELMKKESKKLLER 157 (243)
Q Consensus 136 ~v~eL~~svdl~k~Es~KL~er 157 (243)
+|.||..-|.+|+.|+.+++..
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888887643
No 208
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=20.49 E-value=2.8e+02 Score=21.92 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~ 166 (243)
..-++++.+.|+..++.+.+++.++.+.+..-+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778889999999999999999999888877766654
No 209
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=20.10 E-value=1.8e+02 Score=21.25 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=20.7
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 026138 129 MFVRAEKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 129 ll~~Ae~~v~eL~~svdl~k~Es~KL~e 156 (243)
....|+.+..+-.+.+++++.++++++.
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777778888888888888877653
No 210
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.09 E-value=6.4e+02 Score=23.90 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=40.3
Q ss_pred HHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 026138 115 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRL 182 (243)
Q Consensus 115 L~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~------eraa~AE~E~~RGrtkLr~ag~qiq~l 182 (243)
-||.+|--. ...|..|...|.--+.+..++.||. .++...|.|+.|.-.+...+..||-++
T Consensus 125 ~yR~~LK~I-------R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 125 QYRIHLKSI-------RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 356666544 3445555555555556666666664 367778888888888888888887766
No 211
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.06 E-value=3.7e+02 Score=19.90 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkL 172 (243)
+..-...|..|+..|+.+++|..-|..-+..|.+|-.|.-.-|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~Rl 47 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRL 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888888888888888877777777666554433
Done!