Query 026138
Match_columns 243
No_of_seqs 35 out of 37
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 06:28:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026138.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026138hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3na7_A HP0958; flagellar bioge 91.0 6.5 0.00022 33.8 13.8 102 132-234 50-153 (256)
2 2efr_A General control protein 83.5 15 0.00051 30.6 11.1 83 130-216 13-96 (155)
3 2efr_A General control protein 82.3 18 0.0006 30.1 11.1 84 111-197 70-153 (155)
4 2b9c_A Striated-muscle alpha t 81.2 15 0.00052 30.0 10.2 59 128-186 66-124 (147)
5 3u1c_A Tropomyosin alpha-1 cha 80.6 17 0.00058 27.7 14.1 93 137-234 4-96 (101)
6 1ic2_A Tropomyosin alpha chain 79.4 14 0.00047 27.0 8.5 62 139-200 3-64 (81)
7 3u59_A Tropomyosin beta chain; 77.3 21 0.00072 26.9 14.1 93 137-234 4-96 (101)
8 2dfs_A Myosin-5A; myosin-V, in 74.0 20 0.00069 37.4 11.0 54 110-163 896-956 (1080)
9 3u59_A Tropomyosin beta chain; 59.0 55 0.0019 24.6 9.8 69 133-201 7-75 (101)
10 2xzr_A Immunoglobulin-binding 58.3 69 0.0023 25.5 11.6 49 151-199 57-105 (114)
11 3lay_A Zinc resistance-associa 58.2 60 0.0021 27.2 9.0 75 147-242 72-146 (175)
12 3u1c_A Tropomyosin alpha-1 cha 56.5 63 0.0021 24.5 10.5 65 132-196 27-91 (101)
13 3na7_A HP0958; flagellar bioge 55.8 96 0.0033 26.4 15.2 61 140-200 51-113 (256)
14 3vkg_A Dynein heavy chain, cyt 53.3 1.1E+02 0.0036 36.2 12.5 97 110-206 2010-2106(3245)
15 2b9b_A Fusion glycoprotein F0; 51.9 42 0.0014 32.8 7.8 61 146-206 427-487 (497)
16 3oja_B Anopheles plasmodium-re 50.4 1.5E+02 0.0052 27.2 12.9 96 125-228 474-580 (597)
17 2z5i_A TM, general control pro 47.5 42 0.0015 23.0 5.3 30 131-160 8-37 (52)
18 1i84_S Smooth muscle myosin he 46.7 87 0.003 32.5 9.7 67 134-200 870-936 (1184)
19 2dfs_A Myosin-5A; myosin-V, in 42.7 2.5E+02 0.0085 29.3 12.4 11 189-199 1010-1020(1080)
20 1cii_A Colicin IA; bacteriocin 40.9 2.8E+02 0.0096 27.5 13.2 74 126-199 340-413 (602)
21 3ghg_A Fibrinogen alpha chain; 40.8 86 0.003 31.1 8.1 35 206-240 117-151 (562)
22 3hnw_A Uncharacterized protein 39.9 1.4E+02 0.0049 23.8 9.7 59 133-191 73-131 (138)
23 3bbp_D GRIP and coiled-coil do 38.9 46 0.0016 24.8 4.6 29 128-156 36-64 (71)
24 2b5u_A Colicin E3; high resolu 38.7 1E+02 0.0035 30.4 8.3 66 132-197 318-383 (551)
25 4ani_A Protein GRPE; chaperone 38.5 1.1E+02 0.0038 26.4 7.7 62 138-206 62-125 (213)
26 3ghg_A Fibrinogen alpha chain; 36.9 3.3E+02 0.011 27.1 11.6 95 135-234 64-159 (562)
27 3azd_A Short alpha-tropomyosin 34.3 12 0.0004 24.3 0.7 31 135-165 4-34 (37)
28 3swy_A Cyclic nucleotide-gated 33.8 1.1E+02 0.0038 20.8 6.3 41 132-172 2-42 (46)
29 2v66_B Nuclear distribution pr 29.7 2.1E+02 0.0071 22.6 7.7 70 133-202 1-81 (111)
30 1jcd_A Major outer membrane li 28.4 1.5E+02 0.0051 20.5 6.7 43 130-172 6-48 (52)
31 3mud_A DNA repair protein XRCC 28.0 1.6E+02 0.0054 25.0 6.8 45 128-172 128-172 (175)
32 3plt_A Sphingolipid long chain 27.9 3E+02 0.01 24.3 8.8 53 131-183 100-158 (234)
33 2eqb_B RAB guanine nucleotide 27.6 2.2E+02 0.0074 22.1 12.6 85 141-236 4-88 (97)
34 3swf_A CGMP-gated cation chann 27.4 1.7E+02 0.006 21.7 6.2 31 132-162 4-34 (74)
35 1ses_A Seryl-tRNA synthetase; 25.6 2.4E+02 0.0083 26.0 8.2 77 128-204 28-105 (421)
36 1go4_E MAD1 (mitotic arrest de 24.9 1.1E+02 0.0038 23.8 4.9 33 135-167 12-44 (100)
37 4etp_A Kinesin-like protein KA 24.3 2.2E+02 0.0074 26.2 7.6 35 139-173 7-41 (403)
38 2e7s_A RAB guanine nucleotide 24.1 2.9E+02 0.01 22.5 8.8 45 188-236 64-108 (135)
39 4emc_A Monopolin complex subun 23.4 3E+02 0.01 23.7 7.7 52 122-173 14-65 (190)
40 3qne_A Seryl-tRNA synthetase, 23.1 5E+02 0.017 24.8 11.7 88 117-204 20-112 (485)
41 2r32_A GCN4-PII/tumor necrosis 23.1 65 0.0022 27.3 3.5 39 168-206 5-43 (166)
42 1h2v_C 80 kDa nuclear CAP bind 22.8 5.9E+02 0.02 25.6 14.4 61 38-98 524-584 (771)
43 3oja_A Leucine-rich immune mol 22.4 4.3E+02 0.015 23.8 9.1 26 149-174 424-449 (487)
44 3zx6_A HAMP, methyl-accepting 22.2 4E+02 0.014 23.3 10.9 64 128-191 87-150 (341)
45 3l0f_B C-phycocyanin beta chai 21.7 2.3E+02 0.0078 23.4 6.6 62 36-97 2-68 (172)
46 1kd8_B GABH BLL, GCN4 acid bas 21.4 1.5E+02 0.0053 19.4 4.3 28 130-157 3-30 (36)
47 3m48_A General control protein 21.3 1.2E+02 0.0039 19.6 3.6 26 131-156 3-28 (33)
48 2jee_A YIIU; FTSZ, septum, coi 21.2 2.7E+02 0.0091 20.9 11.4 70 128-200 6-78 (81)
49 2hc5_A ORF 99, hypothetical pr 21.0 35 0.0012 26.9 1.4 23 198-220 80-102 (117)
50 3cl3_D NF-kappa-B essential mo 20.6 1.6E+02 0.0053 24.2 5.1 74 165-238 11-87 (130)
51 2lom_A HIG1 domain family memb 25.7 21 0.00074 27.4 0.0 30 75-107 13-42 (93)
52 2ovc_A Potassium voltage-gated 20.3 62 0.0021 20.8 2.1 22 180-201 6-27 (33)
No 1
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=90.98 E-value=6.5 Score=33.81 Aligned_cols=102 Identities=12% Similarity=0.163 Sum_probs=51.7
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHH--HHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET--ELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREAL 209 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrt--kLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~ 209 (243)
.+...+++++..+..+..++..+..++.-.++.+..|.+ .+.+-.++|..+...+...|.....+|+.+..+-. +--
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~-~l~ 128 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE-KQE 128 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 333344444444444444444444444444444433332 23344557777777777777777777777655422 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 210 KLRAEVASMASLLKRQRAMMDKQIM 234 (243)
Q Consensus 210 ~LRaeVAs~as~lk~qR~aL~k~i~ 234 (243)
.+..+++.+-..+...+..++..+.
T Consensus 129 ~~~~~l~~~~~~l~~~~~~~~~~~~ 153 (256)
T 3na7_A 129 DLKKEMLELEKLALELESLVENEVK 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554443
No 2
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.45 E-value=15 Score=30.58 Aligned_cols=83 Identities=27% Similarity=0.296 Sum_probs=57.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch-HH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR-EA 208 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr-eA 208 (243)
...|+.++.+... +-+++.+-++|+..||....-=-..|+.+|+.|++|--+--|...+=..+-+.++.|-.+ ..
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKE 88 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 88 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777776655 888999999999999999888888999999999999666555544444444444444433 33
Q ss_pred HHHHHHHH
Q 026138 209 LKLRAEVA 216 (243)
Q Consensus 209 ~~LRaeVA 216 (243)
..-|++.|
T Consensus 89 AE~RAE~A 96 (155)
T 2efr_A 89 AETRAEFA 96 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 3
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=82.32 E-value=18 Score=30.14 Aligned_cols=84 Identities=17% Similarity=0.161 Sum_probs=71.8
Q ss_pred hhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 026138 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (243)
Q Consensus 111 pRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E 190 (243)
.|.--|-..+.-+. ..++.|+.+.+.---+|.-+.+++.+|++.+......+..=.-.|.++-.+|.++..-.|-.+
T Consensus 70 qrEd~yEeqIk~L~---~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 70 QKEDKYEEEIKVLS---DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 35555666665553 578888888888888999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHH
Q 026138 191 TQAADLM 197 (243)
Q Consensus 191 ~~A~gL~ 197 (243)
+..+.|+
T Consensus 147 ~~~~~~~ 153 (155)
T 2efr_A 147 NEVARLK 153 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 9888775
No 4
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=81.21 E-value=15 Score=30.01 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=53.3
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~ 186 (243)
.+...|+.++.+....+..+.+++.+..+|+-.||.....=...|+..|+.|++|--+-
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 45568899999999999999999999999999999999999999999999999985543
No 5
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=80.60 E-value=17 Score=27.70 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=67.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHH
Q 026138 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA 216 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVA 216 (243)
+.-.+..|..++.|.....+|+-.+|.+++.-.-...+...+|.+|-+.+-.+|...-.+-+.|.+. ..-=.+-.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea-----~~kLee~e 78 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKS-----EDSLLFAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999988887766666655432 22222223
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026138 217 SMASLLKRQRAMMDKQIM 234 (243)
Q Consensus 217 s~as~lk~qR~aL~k~i~ 234 (243)
..++..-.+-.+|+++|.
T Consensus 79 k~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 79 ENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444445555555553
No 6
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=79.38 E-value=14 Score=26.96 Aligned_cols=62 Identities=21% Similarity=0.283 Sum_probs=45.7
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 026138 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 200 (243)
Q Consensus 139 eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~L 200 (243)
.++..|..++.|.....+++..++.++..-.-...++..+|.+|-+.+--+|...-.+-+.|
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888888888888887777777777777777777777766555444443
No 7
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.28 E-value=21 Score=26.93 Aligned_cols=93 Identities=17% Similarity=0.262 Sum_probs=65.2
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHH
Q 026138 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVA 216 (243)
Q Consensus 137 v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVA 216 (243)
+...+..|..|+-|.....+|+-.+|.+++--.-.......+|.+|-+.+-.+|...-.+-+.|...-.+ -.+--
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~k-----Le~~e 78 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEK-----LEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 4567788888888999999999999999988888888888889988888888887777666666533221 11222
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026138 217 SMASLLKRQRAMMDKQIM 234 (243)
Q Consensus 217 s~as~lk~qR~aL~k~i~ 234 (243)
..++..-.+..+|+++|.
T Consensus 79 k~~~~AE~evasLnRriq 96 (101)
T 3u59_A 79 KKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 233444445555666554
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=73.99 E-value=20 Score=37.35 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=12.2
Q ss_pred chhHHHHHHhhhhhccHHHH-------HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH
Q 026138 110 GPRRFLFRHTFGRLRSEEAM-------FVRAEKNVNELNLSGELMKKESKKLLERAALAEK 163 (243)
Q Consensus 110 gpRrfL~r~Tlgrf~SEEal-------l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~ 163 (243)
.-|+++=|.-+.+++.|..- -..-+.++++|+..++...+|...|.+++...|+
T Consensus 896 ~~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~ 956 (1080)
T 2dfs_A 896 CYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEI 956 (1080)
T ss_dssp HHHHHHHHHHTTTC-----------------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34667777777777666532 3445677888888887776666666655443333
No 9
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=59.03 E-value=55 Score=24.60 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhc
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
..+++..|+.-.|........++..+-.+|.+....-..+.+-.+.|+.+-.-+=+.+.+.......|.
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe 75 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLE 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444444444444444444444444444444444444444444444443
No 10
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=58.27 E-value=69 Score=25.50 Aligned_cols=49 Identities=12% Similarity=0.312 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHh
Q 026138 151 SKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 199 (243)
Q Consensus 151 s~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~ 199 (243)
+++-..|+---.....-.+-+++++..|+..|++.+|-+|+..+.|+.-
T Consensus 57 lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 57 LQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333444444555556677788999999999999999999999888753
No 11
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=58.18 E-value=60 Score=27.17 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHH
Q 026138 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQR 226 (243)
Q Consensus 147 ~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR 226 (243)
++.+.+++.+.....-.++ +.+|++-..||+.|+..---+|.+ +-.|-.|++.+-.++..+|
T Consensus 72 Qq~ql~~I~~e~r~~~~~L---r~ql~akr~EL~aL~~a~~~Deak---------------I~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 72 QQATAQKIYDDYYTQTSAL---RQQLISKRYEYNALLTASSPDTAK---------------INAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTSSSCCHHH---------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCHHH---------------HHHHHHHHHHHHHHHHHHH
Confidence 4444555544433332222 455666666777665443333333 3455566677777777788
Q ss_pred HHHHHHHHHHhhcCCC
Q 026138 227 AMMDKQIMKISELGVS 242 (243)
Q Consensus 227 ~aL~k~i~KIs~~GV~ 242 (243)
-.....+.|. |||
T Consensus 134 ~k~~~em~Ke---Gip 146 (175)
T 3lay_A 134 VKRDVAMAQA---GIP 146 (175)
T ss_dssp HHHHHHHHHT---TCC
T ss_pred HHHHHHHHHh---CCC
Confidence 7777777665 887
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=56.45 E-value=63 Score=24.48 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=33.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADL 196 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL 196 (243)
.|+.+++.+....+..-.|..-|..+...-|.|+-+-...|..+-..|..--+..-+.|....+|
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555545555555544444
No 13
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=55.80 E-value=96 Score=26.43 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=24.4
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHh--HHHHHHHHHHHHHHHhhHHHHHHhh
Q 026138 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQAADLMEGL 200 (243)
Q Consensus 140 L~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~a--g~qiq~l~ss~yK~E~~A~gL~d~L 200 (243)
++..++.++.+..++..-+...+....+-..+|.+. -++++.|-+.+...++.-..|-+.+
T Consensus 51 ~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 51 LEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333334444443332 2344444444444444444444443
No 14
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.34 E-value=1.1e+02 Score=36.15 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=68.9
Q ss_pred chhHHHHHHhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHH
Q 026138 110 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (243)
Q Consensus 110 gpRrfL~r~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~ 189 (243)
.|-|-=-...-..+.--++-++.++.+++++...++.++.+.+.+......-|.|+..-..||..|.+=|.+|.+.--.=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 45444333333444444556667777777777777777777777777777777788888888888888888888877777
Q ss_pred HhhHHHHHHhhccCCch
Q 026138 190 ETQAADLMEGLREIPGR 206 (243)
Q Consensus 190 E~~A~gL~d~Lr~lPsr 206 (243)
+.++..|.+.+..||+.
T Consensus 2090 ~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2090 EQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHH
Confidence 77788888777777775
No 15
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=51.85 E-value=42 Score=32.80 Aligned_cols=61 Identities=15% Similarity=0.295 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 146 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 146 l~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
+.+.|+.+....+..|++-+.+--..|.+....+.++.+.+|.+|+..+.++.-.++-|+-
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGEAPGG 487 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC----
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHHHHhccCCCC
Confidence 3567888888888889999999999999999999999999999999999999999999974
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.39 E-value=1.5e+02 Score=27.17 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=58.8
Q ss_pred cHHHHHHHHHHhHHHHHHhH-----------HhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhH
Q 026138 125 SEEAMFVRAEKNVNELNLSG-----------ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 193 (243)
Q Consensus 125 SEEall~~Ae~~v~eL~~sv-----------dl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A 193 (243)
..+..++..+.++++.++.. +.++.+.+++.++.+..|.+.++=.....+-..+++.+-..+-.+|++-
T Consensus 474 ~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~ 553 (597)
T 3oja_B 474 QQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQL 553 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhcCccccccCCHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHH
Confidence 34555555555555544432 5667777777777777777777765555555566676666777777666
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 026138 194 ADLMEGLREIPGREALKLRAEVASMASLLKRQRAM 228 (243)
Q Consensus 194 ~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~a 228 (243)
..-++.+ .+++.|...+..++|+.=..
T Consensus 554 ~~~~~~~--------~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 554 DNKRAKQ--------AELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHH--------HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 6655554 45556666665555554333
No 17
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=47.48 E-value=42 Score=23.01 Aligned_cols=30 Identities=13% Similarity=-0.008 Sum_probs=21.3
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLLERAAL 160 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~eraa~ 160 (243)
.-|++.|..|.++||.+..++..-.++...
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~~~ 37 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKYKA 37 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 347899999999999887776554444333
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=46.69 E-value=87 Score=32.55 Aligned_cols=67 Identities=12% Similarity=0.143 Sum_probs=32.3
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 026138 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 200 (243)
Q Consensus 134 e~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~L 200 (243)
+.++..+...++.+..+...|++....++.++..-+..+..+..++..+....-+.+.+-..+-+.|
T Consensus 870 ~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444445555555555555555555555555555555555555444444433
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=42.74 E-value=2.5e+02 Score=29.34 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=4.6
Q ss_pred HHhhHHHHHHh
Q 026138 189 VETQAADLMEG 199 (243)
Q Consensus 189 ~E~~A~gL~d~ 199 (243)
.|.....+.++
T Consensus 1010 lee~~~~~~~~ 1020 (1080)
T 2dfs_A 1010 IEEWADKYKHE 1020 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 20
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=40.95 E-value=2.8e+02 Score=27.49 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHh
Q 026138 126 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEG 199 (243)
Q Consensus 126 EEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~ 199 (243)
+..+++.-.++...|+|-++..++|.-+++--........-++.....+|-..+..+.+.--.+|+++.++...
T Consensus 340 ~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 340 DKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 45678888888899999999999999999888888888888888888888888888777777777777665544
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.77 E-value=86 Score=31.09 Aligned_cols=35 Identities=11% Similarity=0.155 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 026138 206 REALKLRAEVASMASLLKRQRAMMDKQIMKISELG 240 (243)
Q Consensus 206 reA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~~G 240 (243)
++-..|+.+|-+..+.++.-|++|++.+.||-++=
T Consensus 117 RrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLE 151 (562)
T 3ghg_A 117 SRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLE 151 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777777777776543
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=39.87 E-value=1.4e+02 Score=23.84 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=29.6
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~ 191 (243)
+..++..|...++.+..|...|...+..+..++---.-++.....++..|-..+-+.|.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444444444444444555555555555543
No 23
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=38.87 E-value=46 Score=24.81 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~e 156 (243)
.||+-.++...-|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999999999999863
No 24
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=38.66 E-value=1e+02 Score=30.44 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=49.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLM 197 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~ 197 (243)
.|+++++..+..++...+.....+||...++.=|.--++.|-.+-+++...+..+-..++.+-++|
T Consensus 318 ~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~ 383 (551)
T 2b5u_A 318 AAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPM 383 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChh
Confidence 456666677777777777777778888888888888888888888888888887777777766443
No 25
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=38.48 E-value=1.1e+02 Score=26.45 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=35.8
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHH--HHHHHHhhHHHHHHhhccCCch
Q 026138 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK--QVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 138 ~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~s--s~yK~E~~A~gL~d~Lr~lPsr 206 (243)
+.|...++.++.+...|.+ .|+|-+.++-+-.+-.++-.. .-|.+++-+..|+..|..|-..
T Consensus 62 ~~l~~~l~~l~~e~~el~d-------~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerA 125 (213)
T 4ani_A 62 AAAKAQIAELEAKLSEMEH-------RYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA 125 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444445555555555544 455555555555554444433 3467888899999887776443
No 26
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=36.89 E-value=3.3e+02 Score=27.08 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=59.2
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH-HHHhhHHHHHHhhccCCchHHHHHHH
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY-KVETQAADLMEGLREIPGREALKLRA 213 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~y-K~E~~A~gL~d~Lr~lPsreA~~LRa 213 (243)
..+++||..++.+ ....+--+.....-.|+.+++ +.+.+ +..+....+. .+|++-..|+..+..-= ..=..||+
T Consensus 64 krINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~r--q~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQl-snIrvLQs 138 (562)
T 3ghg_A 64 NRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGD--FSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKV-QHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSH--HHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHH--HHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3456666666666 333333344444555666654 44444 7777777777 78888888887775433 44456777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026138 214 EVASMASLLKRQRAMMDKQIM 234 (243)
Q Consensus 214 eVAs~as~lk~qR~aL~k~i~ 234 (243)
-|..+.+++++-=..++-.|.
T Consensus 139 nLedq~~kIQRLEvDIdiqir 159 (562)
T 3ghg_A 139 NVRAQLVDMKRLEVDIDIKIR 159 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 788887777776666665554
No 27
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.29 E-value=12 Score=24.29 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=23.6
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEM 165 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~ 165 (243)
..+..++..|..+..+...+++++..++.++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888887765
No 28
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=33.80 E-value=1.1e+02 Score=20.77 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=28.9
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkL 172 (243)
..|.+|+.|..++|.++.-..+|+--...++.-+++.-++|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~l 42 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQL 42 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999988888755555555444444443
No 29
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=29.67 E-value=2.1e+02 Score=22.58 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=46.6
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH-------HhhhHHHHHHhHHH----HHHHHHHHHHHHhhHHHHHHhhc
Q 026138 133 AEKNVNELNLSGELMKKESKKLLERAALAEKE-------MIRGETELKNAGNQ----VQRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 133 Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E-------~~RGrtkLr~ag~q----iq~l~ss~yK~E~~A~gL~d~Lr 201 (243)
|+++..+|+..++.+..|...+.++......| +++--++|+..... |+.|--..=..|+++.-...-|.
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLe 80 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLE 80 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHH
Confidence 57788888888888888888888877777665 66777777766544 44455555555665554433333
Q ss_pred c
Q 026138 202 E 202 (243)
Q Consensus 202 ~ 202 (243)
+
T Consensus 81 D 81 (111)
T 2v66_B 81 D 81 (111)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.38 E-value=1.5e+02 Score=20.52 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=32.2
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkL 172 (243)
+..-..+|..|...|+.|+.+...|..-+..|.+|-.|.-.-|
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556678888888899999888888877777777766654433
No 31
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.96 E-value=1.6e+02 Score=25.04 Aligned_cols=45 Identities=9% Similarity=-0.014 Sum_probs=31.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHH
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETEL 172 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkL 172 (243)
.|+.-|++.|+.|+..+|.+..|+....++-..-..+|-.-.+.|
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLDqTl~eL 172 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477789999999999998888877766666555555554444333
No 32
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.86 E-value=3e+02 Score=24.32 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHhhhHHHHHHhHHHHHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRLA 183 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~------eraa~AE~E~~RGrtkLr~ag~qiq~l~ 183 (243)
...|..|...|.--+-+..++.||. .++...|.|+.|.......+-.||-++=
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 3455666666666666677777776 5778888888888888888888886653
No 33
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.57 E-value=2.2e+02 Score=22.12 Aligned_cols=85 Identities=13% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHHHHHHHH
Q 026138 141 NLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGREALKLRAEVASMAS 220 (243)
Q Consensus 141 ~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as 220 (243)
.+..+.++.++..|+.+...-+.|+.+=...|.... ..=..+|+.-..+=..|.+| ...|=.|.-.|++
T Consensus 4 ~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~-------~~R~~aE~~~~~ie~ElEeL----TasLFeEAN~MVa 72 (97)
T 2eqb_B 4 GSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKEN-------ELRTKAEEEADKLNKEVEDL----TASLFDEANNMVA 72 (97)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 344455555555555555555555555433333333 33333444444444444443 2456689999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 026138 221 LLKRQRAMMDKQIMKI 236 (243)
Q Consensus 221 ~lk~qR~aL~k~i~KI 236 (243)
+.+.+|..+.++..+.
T Consensus 73 ~ar~e~~~~e~kn~~L 88 (97)
T 2eqb_B 73 DARKEKYAIEILNKRL 88 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887765
No 34
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.43 E-value=1.7e+02 Score=21.71 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 026138 132 RAEKNVNELNLSGELMKKESKKLLERAALAE 162 (243)
Q Consensus 132 ~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE 162 (243)
..|.+|+.|..++|.|+.-..+|+--...++
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999998888888874433333
No 35
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=25.59 E-value=2.4e+02 Score=26.02 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=42.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH-HHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCC
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAE-KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIP 204 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE-~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lP 204 (243)
+-+...+.+..++...++.++++..++-+.+..+. ++...=..+.++-+.+|..+-.....+|.+-..++-.|--||
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~ 105 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPP 105 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 44455666677777777777777776665543211 121111233444555566666666666666555555554444
No 36
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=24.95 E-value=1.1e+02 Score=23.82 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=29.7
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhh
Q 026138 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIR 167 (243)
Q Consensus 135 ~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~R 167 (243)
..|..|+..|+-+..|..+|.++...-|-++-+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999988888866
No 37
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=24.26 E-value=2.2e+02 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.047 Sum_probs=14.7
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 026138 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (243)
Q Consensus 139 eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr 173 (243)
.|+..++.++.+.+.|++....++.++..=..+|+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333333
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.12 E-value=2.9e+02 Score=22.49 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=29.4
Q ss_pred HHHhhHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026138 188 KVETQAADLMEGLREIPGREALKLRAEVASMASLLKRQRAMMDKQIMKI 236 (243)
Q Consensus 188 K~E~~A~gL~d~Lr~lPsreA~~LRaeVAs~as~lk~qR~aL~k~i~KI 236 (243)
.+|..-..+=..|.+| ...|=.|+-.|+++.+.+|..+.++..+.
T Consensus 64 ~aE~~~~~ie~ElE~L----TasLFeEAN~MVa~ar~~~~~~e~r~~~L 108 (135)
T 2e7s_A 64 KAEEEADKLNKEVEDL----TASLFDEANNLVADARMEKYAIEILNKRL 108 (135)
T ss_dssp HHHHTTHHHHHHHHHH----HHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443444443 23466788999999999999998877664
No 39
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=23.43 E-value=3e+02 Score=23.74 Aligned_cols=52 Identities=12% Similarity=0.060 Sum_probs=33.7
Q ss_pred hhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 026138 122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (243)
Q Consensus 122 rf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr 173 (243)
|+.+=+-|+..-+.+..-|++.++....|++.|+++++.++.+...-.+.+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 3444455666667777777778888888888888888888887765444443
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.15 E-value=5e+02 Score=24.84 Aligned_cols=88 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred HHhhhhhccHH--HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHH---HHhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 026138 117 RHTFGRLRSEE--AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEK---EMIRGETELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 117 r~Tlgrf~SEE--all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~---E~~RGrtkLr~ag~qiq~l~ss~yK~E~ 191 (243)
.+...|+.+.+ +-+...+.+..+++..++.+++|...+-+.+..+-+ +...=..+.++-+.+|..|-.....+|.
T Consensus 20 ~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 20 ASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555543 344555666677777777777777766665543211 1111122334445555555566666666
Q ss_pred hHHHHHHhhccCC
Q 026138 192 QAADLMEGLREIP 204 (243)
Q Consensus 192 ~A~gL~d~Lr~lP 204 (243)
+-..++-.|--||
T Consensus 100 ~~~~~l~~iPN~~ 112 (485)
T 3qne_A 100 NLRSKINQVGNIV 112 (485)
T ss_dssp HHHHHHTTSCCCC
T ss_pred HHHHHHHhCCCCC
Confidence 6555555544444
No 41
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=23.10 E-value=65 Score=27.29 Aligned_cols=39 Identities=15% Similarity=0.391 Sum_probs=26.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCch
Q 026138 168 GETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPGR 206 (243)
Q Consensus 168 GrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPsr 206 (243)
|-+.+++-...|..+.+.+|-+|+.-+.++.-++++|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta 43 (166)
T 2r32_A 5 GGSRMKQIEDKIEEILSKIYHIENEIARIKKLIGERETA 43 (166)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 456677888889999999999999999999999998865
No 42
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=22.82 E-value=5.9e+02 Score=25.56 Aligned_cols=61 Identities=7% Similarity=-0.015 Sum_probs=45.5
Q ss_pred hhHHHHHhhhhhhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHH
Q 026138 38 SKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATG 98 (243)
Q Consensus 38 s~Dsai~~a~si~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g 98 (243)
++|..+.+-..+-+.|-+|+-.....+-.....+-.-|+.=+.-|.....+=+.||-+..-
T Consensus 524 ~i~v~~q~ll~~GskS~SH~~~~lery~~~lk~l~~~~~~q~~il~~v~~~W~~~~q~~~i 584 (771)
T 1h2v_C 524 KIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV 584 (771)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHTHHHHHHHTSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCceEeh
Confidence 5666777777899999999999888887777777666665555566666677778876553
No 43
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.43 E-value=4.3e+02 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 026138 149 KESKKLLERAALAEKEMIRGETELKN 174 (243)
Q Consensus 149 ~Es~KL~eraa~AE~E~~RGrtkLr~ 174 (243)
.|.+..++++..-++.++.=-.+|+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 33333444444444444433344443
No 44
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=22.16 E-value=4e+02 Score=23.32 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=48.1
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHh
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag~qiq~l~ss~yK~E~ 191 (243)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....+..|..++-+|..
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~ 150 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 150 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677888888888888888888888888888888888888877777777666555543
No 45
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=21.70 E-value=2.3e+02 Score=23.43 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=45.5
Q ss_pred hHhhHHHHHhhhh-hhccChHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHH-HHhhcchhhH
Q 026138 36 IQSKDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK---VKDELV-SAREHPAAAT 97 (243)
Q Consensus 36 ~~s~Dsai~~a~s-i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~k---iK~gv~-~A~~hP~~~~ 97 (243)
.|++-.+|.+|-+ -|=-|+..+..+++|+..+.....++|-.-=+. |++++. +-..+|+.+.
T Consensus 2 ~d~~t~~I~~AD~~gRyls~~EL~~l~~~~~~~~~Rl~aa~~l~~na~~IV~~A~~~~~~~~P~l~~ 68 (172)
T 3l0f_B 2 LDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQ 68 (172)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGTS
T ss_pred CcHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCCCC
Confidence 4667778888876 777899999999999999999888886542222 455554 4457898765
No 46
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=21.42 E-value=1.5e+02 Score=19.38 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=20.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLER 157 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~er 157 (243)
.+.-+.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3556778888888888888888777653
No 47
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.28 E-value=1.2e+02 Score=19.65 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHH
Q 026138 131 VRAEKNVNELNLSGELMKKESKKLLE 156 (243)
Q Consensus 131 ~~Ae~~v~eL~~svdl~k~Es~KL~e 156 (243)
+.-|.+|++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34578899999888889999888864
No 48
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.22 E-value=2.7e+02 Score=20.94 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH---HHHhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhh
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAE---KEMIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGL 200 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE---~E~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~L 200 (243)
.+|..-+.||..+=..|.+++-|.+-|.+.-.... .+...|+-.|...-.+++.-.. .....-.+|++.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~---~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN---GWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHhh
Confidence 57888999999999999999999999977655433 3445566666665555554332 2334445555443
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=21.00 E-value=35 Score=26.91 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=18.9
Q ss_pred HhhccCCchHHHHHHHHHHHHHH
Q 026138 198 EGLREIPGREALKLRAEVASMAS 220 (243)
Q Consensus 198 d~Lr~lPsreA~~LRaeVAs~as 220 (243)
+.+|+||+.+++.|-+.+..+.-
T Consensus 80 EVIRqIPpEe~L~l~~~l~e~~G 102 (117)
T 2hc5_A 80 EVIREIPPKRWLDFYAAMTEFLG 102 (117)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHH
T ss_pred cEEEeCChHHHHHHHHHHHHhhc
Confidence 46799999999999888776654
No 50
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=20.61 E-value=1.6e+02 Score=24.17 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=26.3
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHhhccCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026138 165 MIRGETELKNAGNQVQRLAKQVYKVETQAADLMEGLREIPG---REALKLRAEVASMASLLKRQRAMMDKQIMKISE 238 (243)
Q Consensus 165 ~~RGrtkLr~ag~qiq~l~ss~yK~E~~A~gL~d~Lr~lPs---reA~~LRaeVAs~as~lk~qR~aL~k~i~KIs~ 238 (243)
++--+++|-.|-..=++|-.+.--.|.++..+-..|.++-. -.--.||=+|-||=+.+|-+|.+....=+|.+.
T Consensus 11 LqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAq 87 (130)
T 3cl3_D 11 LQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQ 87 (130)
T ss_dssp ----------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555556666666666655443 355678999999999999999988766666543
No 51
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=25.75 E-value=21 Score=27.37 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhHhh
Q 026138 75 EDAFFSKVKDELVSAREHPAAATGVALTAGLLF 107 (243)
Q Consensus 75 Ed~~f~kiK~gv~~A~~hP~~~~g~a~~ag~ll 107 (243)
|..+.+|+. .-+++||++-+|++.+++.++
T Consensus 13 ~e~~~~K~~---rk~ke~PlvpIg~~~~~~vl~ 42 (93)
T 2lom_A 13 EEDQGSKLI---RKAKEAPFVPVGIAGFAAIVA 42 (93)
Confidence 444445542 345789999999877766654
No 52
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=20.28 E-value=62 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhHHHHHHhhc
Q 026138 180 QRLAKQVYKVETQAADLMEGLR 201 (243)
Q Consensus 180 q~l~ss~yK~E~~A~gL~d~Lr 201 (243)
.++.++++|+|+|....=..|.
T Consensus 6 ~Sm~~Rl~kVE~qv~~md~KLd 27 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSIEHKLD 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999877654444
Done!