Query 026138
Match_columns 243
No_of_seqs 35 out of 37
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 06:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026138.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026138hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 74.1 9.2 0.00067 26.8 8.0 60 136-195 3-67 (72)
2 d2f1ka1 a.100.1.12 (A:166-279) 26.4 99 0.0072 21.6 9.8 44 116-159 47-91 (114)
3 d1seta1 a.2.7.1 (A:1-110) Sery 24.6 1E+02 0.0074 21.1 8.4 74 128-204 28-105 (110)
4 d1fxkc_ a.2.5.1 (C:) Prefoldin 23.5 1E+02 0.0074 21.5 6.4 38 130-167 90-127 (133)
5 d1g73a_ a.7.4.1 (A:) Smac/diab 23.1 1.6E+02 0.011 22.8 16.2 122 39-193 15-153 (157)
6 d2oufa1 a.292.1.1 (A:13-92) Hy 22.2 41 0.003 23.6 3.7 27 142-168 13-40 (80)
7 d1jt6a2 a.121.1.1 (A:73-187) M 22.1 41 0.003 24.0 3.8 38 62-99 39-79 (115)
8 d1b8da_ a.1.1.3 (A:) Phycoeryt 20.0 1.6E+02 0.011 22.3 7.2 113 36-154 2-134 (164)
9 d1qc7a_ a.118.14.1 (A:) FliG { 18.6 1.2E+02 0.0084 21.0 5.6 44 198-241 41-88 (101)
10 d2hc5a1 d.352.1.1 (A:1-109) Hy 16.4 24 0.0018 25.4 1.4 22 198-219 80-101 (109)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.06 E-value=9.2 Score=26.80 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=36.3
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh-hhHHHHHH----hHHHHHHHHHHHHHHHhhHHH
Q 026138 136 NVNELNLSGELMKKESKKLLERAALAEKEMI-RGETELKN----AGNQVQRLAKQVYKVETQAAD 195 (243)
Q Consensus 136 ~v~eL~~svdl~k~Es~KL~eraa~AE~E~~-RGrtkLr~----ag~qiq~l~ss~yK~E~~A~g 195 (243)
.|.-|+..|+.-+..+.-...-+-.|..++. +|-.+.+. -.+++++|--...|.|-+|++
T Consensus 3 sMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL~KLevqaTD 67 (72)
T d1k4ta1 3 SMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 67 (72)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444555555444444444444444444444 44433333 678999999999999999986
No 2
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=26.36 E-value=99 Score=21.63 Aligned_cols=44 Identities=18% Similarity=0.051 Sum_probs=31.9
Q ss_pred HHHhhhhhccHHHHHHH-HHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 026138 116 FRHTFGRLRSEEAMFVR-AEKNVNELNLSGELMKKESKKLLERAA 159 (243)
Q Consensus 116 ~r~Tlgrf~SEEall~~-Ae~~v~eL~~svdl~k~Es~KL~eraa 159 (243)
||-+.|.-.|-..|-.. +..+-..+...++.+.++++.+.+.+.
T Consensus 47 frD~tRiA~s~p~mW~dI~~~N~~~i~~~l~~~~~~L~~l~~~l~ 91 (114)
T d2f1ka1 47 FRDTSRVGGGNPELGTMMATYNQRALLKSLQDYRQHLDQLITLIS 91 (114)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777766 566667778888888888888876653
No 3
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=24.58 E-value=1e+02 Score=21.12 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=39.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHhH----HHHHHHHHHHHHHHhhHHHHHHhhccC
Q 026138 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG----NQVQRLAKQVYKVETQAADLMEGLREI 203 (243)
Q Consensus 128 all~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~RGrtkLr~ag----~qiq~l~ss~yK~E~~A~gL~d~Lr~l 203 (243)
.-|...+.+..++...++.++++...+-+.+..+.. -+...|.+.+ .+|..+-...-.+|..-..++-.|--|
T Consensus 28 d~i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~~---~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPNi 104 (110)
T d1seta1 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP---EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 445666777888888888888887777655532211 1233344333 334444444444444444444433333
Q ss_pred C
Q 026138 204 P 204 (243)
Q Consensus 204 P 204 (243)
|
T Consensus 105 ~ 105 (110)
T d1seta1 105 P 105 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 4
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.52 E-value=1e+02 Score=21.49 Aligned_cols=38 Identities=11% Similarity=0.062 Sum_probs=29.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhh
Q 026138 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 167 (243)
Q Consensus 130 l~~Ae~~v~eL~~svdl~k~Es~KL~eraa~AE~E~~R 167 (243)
..-.+++.++|+..++.+.++..++.+.+...+.++.+
T Consensus 90 ~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~~ 127 (133)
T d1fxkc_ 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888887776666543
No 5
>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.15 E-value=1.6e+02 Score=22.82 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=83.9
Q ss_pred hHHHHHhhhh-hhccChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhHhhccchhHHHHH
Q 026138 39 KDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFR 117 (243)
Q Consensus 39 ~Dsai~~a~s-i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~kiK~gv~~A~~hP~~~~g~a~~ag~lll~gpRrfL~r 117 (243)
=|+-|+-|.+ ..|++++.+.|+---|=+...+|...=..+.+..|. |.
T Consensus 15 he~LIrrA~slv~DSast~LSQTt~AlIda~t~Y~kav~tl~sL~k~-------------------------------y~ 63 (157)
T d1g73a_ 15 SEALMRRAVSLVTDSTSTDLSQTTYALIEAITEYTKAVYTLTSLYRQ-------------------------------YT 63 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------HH
Confidence 3577888888 677778888888877777777776544433333332 55
Q ss_pred HhhhhhccHHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH--------HHHHHHHhhh--------HHHHHHhHHHHHH
Q 026138 118 HTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERA--------ALAEKEMIRG--------ETELKNAGNQVQR 181 (243)
Q Consensus 118 ~Tlgrf~SEEall~~Ae~~v~eL~~svdl~k~Es~KL~era--------a~AE~E~~RG--------rtkLr~ag~qiq~ 181 (243)
..+|++.++|. ..-=+-+.+.|..++..+.|.++|+-.. ..||.-|+-| ++.|--+..||+.
T Consensus 64 a~lgk~~~~ee--d~vWqvII~~R~ev~~~~~e~~~lEs~w~sa~~l~e~aAEAAy~sGAeqAsvta~~~lQ~aqsqV~~ 141 (157)
T d1g73a_ 64 SLLGKMNSEEE--DEVWQVIIGARAEMTSKHQEYLKLETTWMTAVGLSEMAAEAAYQTGADQASITARNHIQLVKLQVEE 141 (157)
T ss_dssp HTTTTSCTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCchhH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888332 1223456778888888889998887432 3566677665 7778888888888
Q ss_pred HHHHHHHHHhhH
Q 026138 182 LAKQVYKVETQA 193 (243)
Q Consensus 182 l~ss~yK~E~~A 193 (243)
.-+..-+.|+.-
T Consensus 142 ~r~~s~~ae~~L 153 (157)
T d1g73a_ 142 VHQLSRKAETKL 153 (157)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 877777777653
No 6
>d2oufa1 a.292.1.1 (A:13-92) Hypothetical protein HP0242 {Helicobacter pylori [TaxId: 210]}
Probab=22.17 E-value=41 Score=23.60 Aligned_cols=27 Identities=41% Similarity=0.367 Sum_probs=22.7
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHH-hhh
Q 026138 142 LSGELMKKESKKLLERAALAEKEM-IRG 168 (243)
Q Consensus 142 ~svdl~k~Es~KL~eraa~AE~E~-~RG 168 (243)
.+=++.++|+.|+.+|+++.|.=+ ++|
T Consensus 13 An~~lv~~ELek~lerlaamE~l~E~~~ 40 (80)
T d2oufa1 13 ASKKLSKKELERLLELLALLETFIEKED 40 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345788999999999999999877 565
No 7
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR {Staphylococcus aureus [TaxId: 1280]}
Probab=22.07 E-value=41 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH---HHhhcchhhHHH
Q 026138 62 DFVLHGVSQYQTYEDAFFSKVKDELV---SAREHPAAATGV 99 (243)
Q Consensus 62 ~~l~~~~sqy~~yEd~~f~kiK~gv~---~A~~hP~~~~g~ 99 (243)
+....+..-.+.||+.|-.-|++|+. ....+|-+++-.
T Consensus 39 e~~~~i~~lr~~y~~~~~~Ii~eGi~~G~f~~~d~~~~~~~ 79 (115)
T d1jt6a2 39 SINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNAVSKI 79 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCceeccCHHHHHHH
Confidence 45666677789999999999999997 445567665533
No 8
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=19.97 E-value=1.6e+02 Score=22.26 Aligned_cols=113 Identities=12% Similarity=0.055 Sum_probs=67.4
Q ss_pred hHhhHHHHHhhhh-hhccChHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHH-HHhhcchhhHHHHHHHhHhhccc
Q 026138 36 IQSKDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFS---KVKDELV-SAREHPAAATGVALTAGLLFMRG 110 (243)
Q Consensus 36 ~~s~Dsai~~a~s-i~~tS~~~~~~~~~~l~~~~sqy~~yEd~~f~---kiK~gv~-~A~~hP~~~~g~a~~ag~lll~g 110 (243)
++.+-++|..|-+ -|=-|+..+.++++|+..+.....++|-.-=+ -|+++.. +-..||+++-+... +-+
T Consensus 2 ~~~it~~I~~AD~~gRyls~~EL~~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~~~l~~~~P~l~~~gg~------~y~ 75 (164)
T d1b8da_ 2 KSVITTTISAADAAGRFPSSSDLESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKYSYLKNAGEA------GDS 75 (164)
T ss_dssp CSHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSTTST------TSS
T ss_pred CcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHchHHhHHHHHHHHHhHHHHHHHHHHHHHHHCcCCCCCCCC------ccc
Confidence 4556677888776 78889999999999999999998888754222 2455555 45568987654321 234
Q ss_pred hhH----------HHHHHhhhhhccHHHHH-----HHHHHhHHHHHHhHHhhHHHHHHH
Q 026138 111 PRR----------FLFRHTFGRLRSEEAMF-----VRAEKNVNELNLSGELMKKESKKL 154 (243)
Q Consensus 111 pRr----------fL~r~Tlgrf~SEEall-----~~Ae~~v~eL~~svdl~k~Es~KL 154 (243)
||| ||=+-|-+....-...+ ++...=+++|...++.+-.=++.|
T Consensus 76 ~~r~~~C~RD~~~~LR~itYai~aGd~~~l~~~~l~glrE~y~sl~vp~~~~v~al~~l 134 (164)
T d1b8da_ 76 PEKINKCYRDIDHYMRLINYSLVVGGTGPVDEWGIAGSREVYRALNLPGSAYIAAFTFT 134 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 555 55555555554433333 333333444444444443333333
No 9
>d1qc7a_ a.118.14.1 (A:) FliG {Thermotoga maritima [TaxId: 2336]}
Probab=18.62 E-value=1.2e+02 Score=20.96 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=36.3
Q ss_pred HhhccCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCC
Q 026138 198 EGLREIPGREALKLRAEVASM----ASLLKRQRAMMDKQIMKISELGV 241 (243)
Q Consensus 198 d~Lr~lPsreA~~LRaeVAs~----as~lk~qR~aL~k~i~KIs~~GV 241 (243)
-.|..+|.|.+-.||.|+..+ .+++..-|+.+-..+++..+-|.
T Consensus 41 ~il~nms~R~~~~l~ee~~~~g~v~~~dve~Aq~~Iv~~~r~l~~~G~ 88 (101)
T d1qc7a_ 41 KIFKNMSKRAAALLKDELEYMGPVRLKDVEEAQQKIINIIRRLEEAGE 88 (101)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 368889999999999999876 57888888888888888887774
No 10
>d2hc5a1 d.352.1.1 (A:1-109) Hypothetical protein YvyC {Bacillus subtilis [TaxId: 1423]}
Probab=16.35 E-value=24 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=17.1
Q ss_pred HhhccCCchHHHHHHHHHHHHH
Q 026138 198 EGLREIPGREALKLRAEVASMA 219 (243)
Q Consensus 198 d~Lr~lPsreA~~LRaeVAs~a 219 (243)
+.+|+||+.+++.+-..+..++
T Consensus 80 eVIRqIP~Ee~l~l~~~i~e~~ 101 (109)
T d2hc5a1 80 EVIREIPPKRWLDFYAAMTEFL 101 (109)
T ss_dssp EEEEEECHHHHHHHHHHHHHHH
T ss_pred eeeeeCCCHHHHHHHHHHHHHh
Confidence 4678899998888877776665
Done!