BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026139
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/243 (79%), Positives = 217/243 (89%), Gaps = 1/243 (0%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR
Sbjct: 102 MVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRV 161
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA
Sbjct: 162 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALA 221
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+LKNTEVV LLAT VEHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+
Sbjct: 222 ALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAV 281
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH-VIYLSLLFIA 239
L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRH VI +LF
Sbjct: 282 LTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAM 341
Query: 240 SEI 242
E
Sbjct: 342 EEF 344
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/241 (76%), Positives = 212/241 (87%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV AEVPKLASAAEYFFK+G EGKRFRPTVLLLMA+AL + + GV LA +LRT
Sbjct: 110 MVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLSDSTEVGVLTILANKLRT 169
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
RQQ IAEITEMIHVASLLHDDVLDDADTRRG+ SLN +MGNKL+VLAGDFLLSRACVALA
Sbjct: 170 RQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALA 229
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L NTEVV+L+AT VEHLVTGETMQ++TS +QR SMDYY+QKTYYKTASLISNSCKA+A+
Sbjct: 230 ALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAI 289
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240
LAG TA+V++LA++YG+NLGLA+QLIDDVLDFTGTSASLGKGSL+DIRH I + + A
Sbjct: 290 LAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAM 349
Query: 241 E 241
E
Sbjct: 350 E 350
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 202 bits (513), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/257 (45%), Positives = 159/257 (61%), Gaps = 38/257 (14%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVPEPLHDGVEDALA--------- 55
P L AA+Y+ + EGK RP ++LLM ATAL + P+ ++ + A
Sbjct: 107 PSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATALCPKAPQRQQSTLQASAAIDTSISPLN 164
Query: 56 ------------------TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 97
T++ Q+ +AEITE+IH ASLLHDDV+D +++RRG S N
Sbjct: 165 ILSDFNPSDATPVSIPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANL 224
Query: 98 VMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM-TTSSDQRC-- 154
GNK+AVLAGDFLL RA VALA L++ EVV LLATV+ +LV GE MQ+ T+ D++
Sbjct: 225 EFGNKMAVLAGDFLLGRASVALARLRHAEVVELLATVIANLVEGEFMQLKNTARDEKNPK 284
Query: 155 ----SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 210
++ YY+QKTY KTASLIS SC+A ALL G A A+ YGKNLGLA+QL+DD+L
Sbjct: 285 WSEETLTYYLQKTYLKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDML 344
Query: 211 DFTGTSASLGKGSLSDI 227
D+T + LGK + +D+
Sbjct: 345 DYTRSEKELGKPAGADL 361
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 150/221 (67%), Gaps = 12/221 (5%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP +++LMA A N+ H+ A E++ Q+ IA
Sbjct: 114 ELKDMSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIAL 161
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 127
+ EMIH A+L+HDDV+DDA +RRG ++N + G K AVLAGD +LS A VALA + NT V
Sbjct: 162 VAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASVALARIGNTAV 221
Query: 128 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
V++LA V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 222 VSMLAQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPV 281
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++
Sbjct: 282 VHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLK 322
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 194 bits (492), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 100/221 (45%), Positives = 146/221 (66%), Gaps = 12/221 (5%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP ++ LMA A N+ H+ A+ Q+ IA
Sbjct: 120 ELKEMSEYYFDG--KGKAFRPIIVALMARACNIH-----HNNSRHVQAS-----QRAIAL 167
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 127
I EMIH ASL+HDDV+DDA +RRG ++N + G K AVLAGD +LS A +ALA + NT V
Sbjct: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTV 227
Query: 128 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
+++L V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 228 ISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPV 287
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++
Sbjct: 288 VHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLK 328
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 188 bits (477), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/221 (42%), Positives = 147/221 (66%), Gaps = 20/221 (9%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L+S + Y+F++ +GKR RPT++LL++ AL++ + Q +A
Sbjct: 168 PILSSISSYYFEL--KGKRIRPTIVLLLS----------------KALSSTVHGSQLKLA 209
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EI EMIH ASL+HDDV+D+A TRR + S+N NKLA+L GD+LL+RA V L++++N +
Sbjct: 210 EIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCGDYLLARASVVLSTIRNPD 269
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
V ++T + LV GE MQ S+ S D Y+QKTY KT SLI+NSC++ A+L+G +
Sbjct: 270 VTECMSTALAELVEGEFMQ--AKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADS 327
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ ++ ++GKNLGLA+Q++DD+LD+TG++ GK + D+
Sbjct: 328 NIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDL 368
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 187 bits (476), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/227 (43%), Positives = 145/227 (63%), Gaps = 16/227 (7%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V A P L +AAE+ F+ G GKR RP ++LL++ A L EL
Sbjct: 25 LVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT--------------LLDQELTA 68
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
R + +AEITEMIH ASL+HDDV+D+AD RR + ++N + N++AVLAGDFL +++ LA
Sbjct: 69 RHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRVAVLAGDFLFAQSSWYLA 128
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L N EVV LL+ V+ GE +Q D ++ Y++K+Y+KTASLI+NS KA +
Sbjct: 129 NLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKSYFKTASLIANSAKAAGV 188
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
L+ +V ++YGK+LGLA+Q++DD+LDFT + LGK + SD+
Sbjct: 189 LSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDL 235
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 156/276 (56%), Gaps = 57/276 (20%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATAL--------------------NVRV--PE 44
P L A Y+F+ EGK RP ++LL++ AL NV PE
Sbjct: 93 PTLNKVATYYFQS--EGKHVRPLIVLLLSRALSAIPESERDRGTFDASDVTENVGELNPE 150
Query: 45 P-----------LHDGVE------------DALATE---LRTRQQCIAEITEMIHVASLL 78
P LH G+ D L E + +Q+ +AEI EMIH ASLL
Sbjct: 151 PSINDPLSPIEILH-GINPDIVLNPLSRPSDPLPYESNGILPKQRRLAEIVEMIHTASLL 209
Query: 79 HDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 138
HDDV+D++ TRRG + N GNK+A+LAGDFLL RA VA+A L+N EV+ LL+T + +L
Sbjct: 210 HDDVIDNSATRRGSPTGNVAFGNKMAILAGDFLLGRASVAIARLRNAEVIELLSTTIANL 269
Query: 139 VTGETMQM------TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILA 192
V GE MQ+ + + + +YY+ KTY KTASL+S SC+A A+L+G + +
Sbjct: 270 VEGEFMQLKNTIVDNSEIANKATFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDAS 329
Query: 193 FDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
+ +GKNLGL +Q++DD+LD++ + LGK + +D++
Sbjct: 330 YKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLK 365
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 180 bits (456), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 147/227 (64%), Gaps = 13/227 (5%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 71 LVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT-----------AELAGLLELTT 117
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++AVLAGDF+ +++ LA
Sbjct: 118 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA 177
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASLI+ S ++ A+
Sbjct: 178 NLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAI 237
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+
Sbjct: 238 FSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDL 284
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 148/227 (65%), Gaps = 13/227 (5%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 102 LVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT-----------AELAGLLELTT 148
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++AVLAGDF+ +++ LA
Sbjct: 149 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA 208
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASL+++S ++ A+
Sbjct: 209 NLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAI 268
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+
Sbjct: 269 FSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDL 315
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 145/227 (63%), Gaps = 13/227 (5%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ H E A EL T
Sbjct: 105 IVGAENPVLISAAEQIF--GAGGKRMRPGLVFLVS-----------HATAELAGLKELTT 151
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
+ +AEI EMIH ASL+HDDVLD++D RRG +++ + G ++AVLAGDF+ ++A LA
Sbjct: 152 EHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHELFGTRVAVLAGDFMFAQASWYLA 211
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q ++ D +D Y+ K++YKTASL++ S K A+
Sbjct: 212 NLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKSFYKTASLVAASTKGAAI 271
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ +V +++GKNLGL++Q++DD+LDFT ++ LGK + SD+
Sbjct: 272 FSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDL 318
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 143/222 (64%), Gaps = 16/222 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++AA++ + VE K+ RP ++LL+A A++ +++T QQ +A
Sbjct: 31 PILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN--------------KKIKTSQQRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
E+TE+IH A+LLHDDV+D++ RRG S+N GNK+AV AGDFL +++ LA++ N E
Sbjct: 75 EVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVFAGDFLFAQSSWYLANINNLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ L GE Q T + S+ Y++K++ KTASLI+ SCK+ LL+
Sbjct: 135 VVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNKTASLIAASCKSCCLLSDFDQ 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
+ ++YGKNLGLA+Q+IDD+LD T +S +LGK + SD++
Sbjct: 195 SLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLK 236
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 144/227 (63%), Gaps = 13/227 (5%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL
Sbjct: 116 IVGAENPVLISAAEQIFSAG--GKRMRPGLVFLVSRAT-----------AELAGLKELTV 162
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
+ + EI EMIH ASL+HDDVLD++D RRG +++ + G ++AVLAGDF+ ++A LA
Sbjct: 163 EHRRLGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLA 222
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q ++ D +D YM K+YYKTASL++ S K A+
Sbjct: 223 NLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAI 282
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ ++VA + +GKNLGL++Q++DD+LDFT ++ LGK + +D+
Sbjct: 283 FSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDL 329
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 95/228 (41%), Positives = 146/228 (64%), Gaps = 27/228 (11%)
Query: 22 EGKRFRPTVLLLMATALNVRVPEPLHDGVEDALA-------TELRT--------RQQCIA 66
+GK+ RP+++LLM+ A + L G++ ++ +LR+ Q +A
Sbjct: 70 QGKQMRPSLVLLMSKATS------LCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLA 123
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
+ITEMIH+ASLLHDDV+D A+ RRG S N GN+ ++LAG+F+L+RA A+A L+N +
Sbjct: 124 QITEMIHIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQ 183
Query: 127 VVTLLATVVEHLVTGETMQMTTSSD------QRCSMDYYMQKTYYKTASLISNSCKAIAL 180
V LLATV+ LV GE +Q+ + D ++ + DYY++K++ KTASLIS SCKA +
Sbjct: 184 VTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSCKASTI 243
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
L + VA A +YG+ +G A+QL+DDVLD+T +LGK + +D++
Sbjct: 244 LGQCSPTVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLK 291
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 141/221 (63%), Gaps = 16/221 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F G GKR RP ++ L+A A + + ++ T Q+ +A
Sbjct: 31 PILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK--------------QDINTGQKRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDD++D+ TRRG+ +++ + K+AVLAGDFL +++ LA+++N
Sbjct: 75 EITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKIAVLAGDFLFAQSSWYLANIENLA 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ GE Q D S+D Y++K++YKTASLI+ SC+ A+L G
Sbjct: 135 VVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKSFYKTASLIAASCRGAAMLNGSNH 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
++ + YGK++GLA+Q++DDVLD TG++ SLGK + +D+
Sbjct: 195 QINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADL 235
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 140/221 (63%), Gaps = 16/221 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F+ G GKR RP ++LL+A + + + E++ Q+ +A
Sbjct: 31 PILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ--------------QEIKPGQRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDDV+D+ TRRG +++ + K+AVLAGDFL +++ LA++ N E
Sbjct: 75 EITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAGDFLFAQSSWYLANIGNLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ GE Q D S+D Y++K++YKTASL++ SC+ A+L +
Sbjct: 135 VVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLNS 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
++ + YGK++GLA+Q++DDVLD G++ SLGK S +D
Sbjct: 195 QMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADF 235
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 45/230 (19%)
Query: 43 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 102
PEPL + D L +Q+ +AEI EMIH ASLLHDDV+D +DTRRG S N NK
Sbjct: 157 PEPLPEETFDKQRGIL-PKQRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNK 215
Query: 103 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS------------ 150
+AVLAGDFLL RA V+++ L N EVV L++ + +LV GE MQ+ +S
Sbjct: 216 MAVLAGDFLLGRATVSISRLHNPEVVELMSNSIANLVEGEFMQLKNTSIDADIDTIENGH 275
Query: 151 ------------------------------DQ--RCSMDYYMQKTYYKTASLISNSCKAI 178
DQ + +YY+ KTY KTA+LIS SC+
Sbjct: 276 KLLPVPSKKLEVKEHDFRVPSRQQGLQLSHDQIIETAFEYYIHKTYLKTAALISKSCRCA 335
Query: 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
A+L+G + V +D+G+NLG+ +QL+DD+LDFT + LGK S +D++
Sbjct: 336 AILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLK 385
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 146/222 (65%), Gaps = 16/222 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++A+E+ F GKR RP ++LL++ A +E+ + T +R + +A
Sbjct: 31 PILSAASEHLF--SASGKRPRPAIVLLISKA-----------TMENEIIT---SRHRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDD+LD++D RRGI +++ G K+A+LAGDFL +++ LA+L++ E
Sbjct: 75 EITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAGDFLFAQSSWYLANLESLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV L++ V+ GE + +++ Y++K++YKTASL++ S KA ALL+
Sbjct: 135 VVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASLLAASSKAAALLSHVDL 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
VA ++YG++LGLA+Q++DD+LDFT ++ LGK S SD++
Sbjct: 195 TVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLK 236
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 19/224 (8%)
Query: 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 63
++VP + Y + G GKR RP + +L A +L G E + +
Sbjct: 33 SDVPLIGQLGFYIVQGG--GKRIRPLIAVLAARSL----------GFEGSNSI------- 73
Query: 64 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123
A E IH ASLLHDDV+D++D RRG + N GN +VL GDF+ +RA +A L+
Sbjct: 74 TCATFVEFIHTASLLHDDVVDESDMRRGRATANAEFGNAASVLVGDFIYTRAFQLVAQLE 133
Query: 124 NTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 183
+ ++++++A L GE Q+ +D S YM+ Y KTA L + +A A++AG
Sbjct: 134 SLKILSIMADATNVLAEGEVQQLMNVNDPETSEANYMRVIYSKTARLFEVAGQAAAIVAG 193
Query: 184 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
T DYG+ LG A+QL+DDVLD++ + +LGK D+
Sbjct: 194 GTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDL 237
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 17/205 (8%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G +A T IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG--NAHVT--------IAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 143 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 202
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 203 YQLIDDVLDFTGTSASLGKGSLSDI 227
+QLIDD+LD+ LGK D+
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDL 231
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/205 (36%), Positives = 112/205 (54%), Gaps = 17/205 (8%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G +A T IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG--NAHVT--------IAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 143 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 202
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 203 YQLIDDVLDFTGTSASLGKGSLSDI 227
+QLIDD+LD+ LGK D+
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDL 231
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 123 bits (309), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 116/226 (51%), Gaps = 19/226 (8%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V +E L AA + + G GKR RP +LL A G D R
Sbjct: 25 VQSEYGPLGEAALHLLQAG--GKRIRPVFVLLAARF-----------GQYDL------ER 65
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
+ +A E+IH+ASL+HDDV+DDAD RRG ++ N+ A+ GD+L +R+ +A
Sbjct: 66 MKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERMAE 125
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
L N +LA + + GE Q+ + Y+++ KTA LI+ SC+ AL
Sbjct: 126 LGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGALA 185
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
AG + + +G +G+++Q+ DD+LDFTGT LGK + SD+
Sbjct: 186 AGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDL 231
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 110 bits (276), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 115/220 (52%), Gaps = 19/220 (8%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V ++ P L+ A + + G GKR RP +LL + + +
Sbjct: 53 VRSDYPLLSEAGLHLLQAG--GKRIRPVFVLLSGMFGDYDI-----------------NK 93
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
+ +A EMIH+ASL+HDDV+DDA+ RRG ++ N++A+ GD++L+ + +
Sbjct: 94 IKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMMTR 153
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
+ + +L+ + + GE Q+ + ++ Y+++ KTA LI+ SC+ A+
Sbjct: 154 INEPKAHRILSQTIVEVCLGEIEQIKDKYNMEQNLRTYLRRIKRKTALLIAVSCQLGAIA 213
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 221
+G ++ + +G +G++YQ+IDD+LDFT T LGK
Sbjct: 214 SGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGK 253
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 123/241 (51%), Gaps = 21/241 (8%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ ++ + AA + G GKR RP +LL L+D +D L +RT
Sbjct: 25 IQSDSETINKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDDL---IRT- 69
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
A E++H+ASL+HDD +D++D RRG S++ A+ G FLL+RA +A+
Sbjct: 70 ----AVSLELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIAT 125
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
+ N++ + + + + GE QM + S Y+++ KTA LI SC AL
Sbjct: 126 INNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALS 185
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR--HVIYLSLLFIA 239
+ + +G +G++YQ+IDD+LD+T A+LGK SDIR H+ Y + IA
Sbjct: 186 SQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIA 245
Query: 240 S 240
+
Sbjct: 246 N 246
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 107 bits (266), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 98/156 (62%), Gaps = 5/156 (3%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALA 120
Q+ +AEITE+IH+A L+H +++ + + G L + GNK+A+L+GDFLL+ AC LA
Sbjct: 145 QRSLAEITELIHIALLVHRGIVNLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLA 204
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDY----YMQKTYYKTASLISNSCK 176
L+NT+VV LLA+ + LV G + +TS + + D + ++T+ +L++ SC+
Sbjct: 205 LLQNTKVVELLASALMDLVQGVYHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQ 264
Query: 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212
A LA AEV +AF YGK++ +++++ DV F
Sbjct: 265 AAMELAKHDAEVQNMAFQYGKHMAMSHKINSDVQPF 300
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ ++V + S +++ + G GKR RP + LL A A T L+
Sbjct: 28 ISSKVALVMSVSKHVVEAG--GKRMRPIMCLLAAYACG---------------ETNLKHA 70
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
Q+ +A I EM+H A+L+HDDV+D++ RRG + N N+ AVL GDFL++RA L
Sbjct: 71 QK-LAAIIEMLHTATLVHDDVVDESGLRRGRPTANATWNNQTAVLVGDFLIARAFDLLVD 129
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
L N ++ +T + GE +Q+ + D Y+Q + KT+ L + + A+L
Sbjct: 130 LDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELATEGAAIL 189
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
AG+ L + + G A+Q+IDD+LD+T + +LGK D+
Sbjct: 190 AGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDL 234
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/168 (37%), Positives = 100/168 (59%), Gaps = 10/168 (5%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALA 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+AVL+GDFLL+ AC LA
Sbjct: 146 QRNLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMKFGNKIAVLSGDFLLANACNGLA 205
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSS-------DQRCSMDYYMQKTYYKTASLISN 173
L+NT+VV LLA+ + LV G + + S+ D R S + ++T+ +L++
Sbjct: 206 LLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDDIRIST--WKEQTFLSHCALLAK 263
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 221
SCKA LA A V +AF YGK++ +++++ D+ F AS K
Sbjct: 264 SCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFIKDKASDSK 311
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 100 bits (249), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 28/228 (12%)
Query: 8 KLASAAEYFFKMGVEGKRFRP--TVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 65
KL +A+++ G GKR RP TV+ M D +E+ L
Sbjct: 34 KLYNASKHLLFAG--GKRIRPYLTVVTYMLKK----------DDIEEVLPA--------- 72
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
A E+IH +L+HDD++D+ D RRG +++ V G +A+LAGD L ++A A++ +K+
Sbjct: 73 AAAVELIHNYTLIHDDIMDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDN 132
Query: 126 ----EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
EV+ +L+ + G+ M M + +M+ Y+ KT +L+ S A++
Sbjct: 133 KKAHEVLKILSKACVEVCEGQAMDMEFEN-YYPTMEEYLDMIRKKTGALLEASVGIGAVM 191
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
A E +Y K +GL +Q+ DDVLD G LGK SDIR
Sbjct: 192 ADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIRE 239
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 99/166 (59%), Gaps = 6/166 (3%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALA 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+A+L+GDFLL+ AC LA
Sbjct: 146 QRSLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLA 205
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD-----YYMQKTYYKTASLISNSC 175
L+NT+VV LL++ + LV G + + S+ + D + ++T+ +L++ SC
Sbjct: 206 LLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDDIGISTWKEQTFLSHCALLAKSC 265
Query: 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 221
+A LA A V +AF YGK++ +++++ D+ F AS K
Sbjct: 266 QAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKASDSK 311
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 107/235 (45%), Gaps = 26/235 (11%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ +VPKL A+ + F G GKR RP +L + + + R R
Sbjct: 23 ISGDVPKLYEASYHLFTSG--GKRLRPLILTISSDLFGGQ-----------------RER 63
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA----CV 117
E++H +L+HDD++D + RRG+ +++ G LA+LAGD L ++A
Sbjct: 64 AYYAGAAIEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQ 123
Query: 118 ALASLKNTEVVTLLATVVEHLV---TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 174
AL L + ++ ++ G+ + M Y+ KTA+L S S
Sbjct: 124 ALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSAS 183
Query: 175 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
AL+AG L D+G NLG+A+Q++DD+L T LGK SDIR
Sbjct: 184 SSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIRE 238
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/223 (36%), Positives = 116/223 (52%), Gaps = 23/223 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL A+ P EDA +A
Sbjct: 31 LLKASEHLITAG--GKKIRPSLALLSCEAVG---GNP-----EDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E+IH SL+HDD++DD + RRG S++ + G +A+LAGD L S+A A+ ++E V
Sbjct: 72 IELIHTFSLIHDDIMDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERV 131
Query: 129 T-LLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
LA VV+ V G+ + M + D YM+ Y KTA+LI+ + KA A++ G
Sbjct: 132 KDALAVVVDSCVKICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGGA 191
Query: 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ DYGK +GLA+Q+ DD LD SLGK SDI
Sbjct: 192 SEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDI 234
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 94.7 bits (234), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 25/224 (11%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL + A+ +P DA +A
Sbjct: 31 LLRASEHLITAG--GKKIRPSLALLSSEAVG---GDP-----GDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E+IH SL+HDD++DD + RRG +++ + G +A+LAGD L S+A A+ ++E+V
Sbjct: 72 IELIHTFSLIHDDIMDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMV 131
Query: 129 T-LLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
LA VV+ V G+ + M + + YM+ Y KTA+LI+ + KA A++ G
Sbjct: 132 KEALAVVVDSCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGGG 191
Query: 185 TA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ E+A L DYG+ +GLA+Q+ DD LD SLGK SDI
Sbjct: 192 SPQEIAALE-DYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDI 234
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 94.7 bits (234), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 116/236 (49%), Gaps = 26/236 (11%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
V + L A+ + F G GKR RP VL+ + D + + R
Sbjct: 24 FVKSNFKTLEEASFHLFTAG--GKRLRPLVLVSSS----------------DLIGGD-RE 64
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL- 119
R A E++H +L+HDD++D+ RRG+ +++ G +A+LAGD+L ++A AL
Sbjct: 65 RAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEALN 124
Query: 120 ASLK----NT--EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 173
+LK NT + ++ T +E + G+ M M+ + + + Y+Q KTA L S
Sbjct: 125 EALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSC 184
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
S ++ +V +YG NLG+++Q++DD+L G LGK SDIR
Sbjct: 185 SAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDIRE 240
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 199
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
GLA+QL+DD+L G GK SD+R
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLR 263
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 20/209 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 199
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
GLA+QL+DD+L G GK SD+R
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLR 263
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 64
E P L E+ G GKR RP +LLL++ + + +R
Sbjct: 34 EDPGLKKMVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGSYSRSLN 74
Query: 65 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
A EM+H ASL+HDD+LD RR + S G A+L GD+L++++ +A S
Sbjct: 75 AALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IAFISPYG 133
Query: 125 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
+V+ + GE + + + DY+ + Y KTASL + S A G
Sbjct: 134 EKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIGAYTGGA 192
Query: 185 TAEVAILAFDYGKNLGLAYQLIDDVLDF 212
E+A +G LG AYQ++DD+L+F
Sbjct: 193 EEELAERFSHFGNALGTAYQIVDDILEF 220
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/182 (33%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 70 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-------CVALA 120
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A + ++
Sbjct: 148 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVS 207
Query: 121 SLKNTEVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 178
S + V LA + E LV G+ + + + ++ +KTA L+ +
Sbjct: 208 SARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLG 267
Query: 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI--RHVIYLSLL 236
A+L G T E Y +++GL +Q++DD+LD T +S LGK + D+ V Y LL
Sbjct: 268 AILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 327
Query: 237 FI 238
I
Sbjct: 328 GI 329
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 91/170 (53%), Gaps = 11/170 (6%)
Query: 70 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS-LKNTE 126
EMIH SL+HDD+ +D+ RRG + + + G LA+LAGD LL+ A +A+ KN
Sbjct: 79 EMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVP 138
Query: 127 ---VVTLLATVVEH-----LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 178
+V ++A V LV G+ + +++ +++ +KT +L+ + +
Sbjct: 139 ADLIVKVIAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSG 198
Query: 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
ALLAG + Y +N+GLA+Q+IDDVLD T LGK D++
Sbjct: 199 ALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLK 248
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 33/234 (14%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++LA R C
Sbjct: 98 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESLAMPAR----CA-- 139
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LLS A LAS ++
Sbjct: 140 -VEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS 198
Query: 126 EV--------VTLLATVV--EHLVTGETMQMTTSS-D-QRCSMDYYMQKTYYKTASLISN 173
EV V LA + E LV G+ + +++ D +++ +KTA+L+
Sbjct: 199 EVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA 258
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
S ++ G + E + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 259 SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDL 312
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 28/241 (11%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATAL--NVRVPEPLHDGVEDALATELRTRQQCI 65
+L A+ Y G GKR RP VL+L A A+ N+R P A+A EL
Sbjct: 32 ELYKASRYLVDAG--GKRLRPAVLILAAEAVGSNLRSVLPA------AVAVEL------- 76
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
+H +L+HDD++D D RRG+ +++ G A+LAGD L S+A L+ ++N
Sbjct: 77 ------VHNFTLIHDDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVENE 130
Query: 126 EVVTL-----LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
V L L+ + G+ + M + ++ + Y++ KT+ L + + K AL
Sbjct: 131 PVRVLKCMDVLSKTCTEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGAL 190
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240
L G + EVA +YG+ +G+ +Q+ DDVLD T LGK SD+ Y ++ A
Sbjct: 191 LGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAF 250
Query: 241 E 241
E
Sbjct: 251 E 251
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 108/232 (46%), Gaps = 39/232 (16%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P LA+A Y G G R RPT+L+ +A A P V DA A L
Sbjct: 25 PLLAAALPYGVFPG--GARIRPTILVSVALACGDDCP-----AVTDAAAVAL-------- 69
Query: 67 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA---- 120
E++H ASL+HDD+ D+AD RRG SL+ LAVLAGD LL R LA
Sbjct: 70 ---ELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLADVGA 126
Query: 121 -----SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSC 175
+LK + L+ + G+ + S+ + + Y Q KT +L +
Sbjct: 127 VNPDRALKLISKLGQLSGARGGICAGQAWE----SESKVDLAAYHQA---KTGALFIAAT 179
Query: 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ A+ AG AE FD G +G A+Q+ DD+ D ++ ++GK + DI
Sbjct: 180 QMGAIAAGYEAEP---WFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDI 228
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 36/248 (14%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
KL A Y + G GKR RP +LL AL G + A+ +A
Sbjct: 33 KLKKAMAYSLEAG--GKRIRPLLLLSTVRAL----------GKDPAVGL-------PVAC 73
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +A+LAGD LL+ A + + +
Sbjct: 74 AIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDE 133
Query: 126 EV--------VTLLATVV--EHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNS 174
+ + LA E +V G+ M S Y+ + +KT ++ S
Sbjct: 134 RIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHR--HKTGKMLQYS 191
Query: 175 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK--GSLSDIRHVIY 232
A AL+ G A ++ +LGLA+Q+ DD+LD G +GK GS Y
Sbjct: 192 VHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATY 251
Query: 233 LSLLFIAS 240
+LL +A
Sbjct: 252 PALLSLAG 259
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 122/246 (49%), Gaps = 20/246 (8%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATAL-NVRVPEPL---HDGVEDALAT 56
+ V + +L SA+ Y G GKR RPT+LLL A +L +V EPL +
Sbjct: 26 LPVQKPERLYSASRYLLDAG--GKRLRPTILLLAAESLADV---EPLSADYRQFPSLPGD 80
Query: 57 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116
E+ ++ E+I +L+HDD++DD D RRG+ +++ + A+LAGD L S+A
Sbjct: 81 EVDVLSAAVS--IEVIQSFTLIHDDIMDDDDLRRGVPAVHREYDLETAILAGDTLYSKAF 138
Query: 117 -----VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI 171
+ ++ E + LAT + G+ + + + + + Y++ +KTA L
Sbjct: 139 EYMLDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLY 198
Query: 172 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI---- 227
+ + A+L G E YG ++G A+Q+ DD+LD T S LGK SD+
Sbjct: 199 AAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENK 258
Query: 228 RHVIYL 233
R VI L
Sbjct: 259 RTVITL 264
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 13/182 (7%)
Query: 70 EMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLS-------RACVALA 120
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A ++
Sbjct: 135 EMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGVS 194
Query: 121 SLKNTEVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAI 178
S + VV LA + E LV G+ + + + +++ +KTA+L+ S
Sbjct: 195 SERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLG 254
Query: 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI--RHVIYLSLL 236
A++ G E + + +GL +Q++DD+LD T +S LGK + D+ V Y LL
Sbjct: 255 AIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLL 314
Query: 237 FI 238
I
Sbjct: 315 GI 316
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 100/230 (43%), Gaps = 25/230 (10%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L+ A+ + K G GKR RP + LL A L E R +A
Sbjct: 17 RLSGASLHLIKAG--GKRLRPLITLLTARMLG---------------GLEAEARAIPLAA 59
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-- 125
E H SL+HDD++D + RRG+ + + V G+ A+LAGD L + A +A +
Sbjct: 60 SIETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGM 119
Query: 126 ------EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 179
+L+ + G+ M + Y+ KT +LI + + A
Sbjct: 120 SHEQAYRAFKVLSEAAIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGA 179
Query: 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
+ AG +E+ + + G N G+A+Q+ DD+L G GK +D+R
Sbjct: 180 VAAGAGSEIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRR 229
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 115/235 (48%), Gaps = 34/235 (14%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++ A A
Sbjct: 102 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESTAMP-------AAC 142
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LLS A LAS ++
Sbjct: 143 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSS 202
Query: 126 EVVTLLATV-----------VEHLVTGETMQMTTSS-D-QRCSMDYYMQKTYYKTASLIS 172
+VV+ + V E LV G+ + +++ D +++ +KTA+L+
Sbjct: 203 DVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLE 262
Query: 173 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
S A++ G + + + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 263 ASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDL 317
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 32/239 (13%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
++V E + A Y G GKR RP +L L A L + E+A+A
Sbjct: 97 IIVKEPHVIHEAMRYSLLAG--GKRVRP-MLCLAACEL-------VGGNQENAMAA---- 142
Query: 61 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--- 115
A EMIH SL+HDD+ +D+ D RRG + + + G +AVLAGD LL+ A
Sbjct: 143 -----ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEH 197
Query: 116 -CVALASLKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTAS 169
+ A + + +V +A + E LV G+ + + + S++ +KTA+
Sbjct: 198 IVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAA 257
Query: 170 LISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
L+ +S A+L G T EV L + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 258 LLESSVVLGAILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 315
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP +LLL A L V HDG+ D +A EM+H ASL+ DD+
Sbjct: 52 GKRIRPMLLLLTARDLGCAVS---HDGLLD------------LACAVEMVHAASLILDDM 96
Query: 83 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVTLLATV 134
+DDA RRG +++ G +A+LA LLS+A L L V+ L+
Sbjct: 97 PCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIADADGLTPLAKNRAVSELSNA 156
Query: 135 V--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILA 192
+ + LV G+ ++ R S + + ++KT++L S + +++A ++E
Sbjct: 157 IGMQGLVQGQFKDLSEGDKPR-SAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCL 215
Query: 193 FDYGKNLGLAYQLIDDVLD 211
+ +LG A+QL+DD+ D
Sbjct: 216 HRFSLDLGQAFQLLDDLTD 234
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/239 (32%), Positives = 113/239 (47%), Gaps = 42/239 (17%)
Query: 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 62
+E P KLA+A +Y G G R RPT+LL +ATA P + DA A L
Sbjct: 21 SEAPSKLATALDYAVTPG--GARIRPTLLLSVATACGDDRP-----ALSDAAAVAL---- 69
Query: 63 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFL-------LS 113
E+IH ASL+HDD+ DDA+ RRG +++ LA+L GD L L+
Sbjct: 70 -------ELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLA 122
Query: 114 RACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYY---KTASL 170
RA A + ++VT LA + TG M M + Q + + + Y KT +L
Sbjct: 123 RA-AADQPQRALQLVTALA-----VRTG--MPMGICAGQGWESESQINLSAYHRAKTGAL 174
Query: 171 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
+ + A+ AG AE + G +G A+Q+ DD+ D + +LGK + D H
Sbjct: 175 FIAATQMGAIAAGYEAEP---WEELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIH 230
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 36 TALNVRVPEPLHDGVEDAL-ATELRTRQQ-CIAEI----------------TEMIHVASL 77
+A+++R P +H+ + +L A R R CIA EMIH SL
Sbjct: 72 SAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAACAVEMIHTMSL 131
Query: 78 LHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVT 129
+HDD+ +D+ D RRG + + V G +AVLAGD L+S A A++ + +
Sbjct: 132 IHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTAVSPARVVRAIG 191
Query: 130 LLATVV--EHLVTGETMQMTTSS-DQR-CSMDYYMQKTYYKTASLISNSCKAIALLAGQT 185
LA + + LV G+ + +T+ DQ ++ +KTA L+ + A++ G +
Sbjct: 192 ELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGS 251
Query: 186 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
E + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 252 DEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDL 293
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,457,321
Number of Sequences: 539616
Number of extensions: 2938746
Number of successful extensions: 8003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 7778
Number of HSP's gapped (non-prelim): 117
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)