Query 026139
Match_columns 243
No_of_seqs 168 out of 1176
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 04:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026139.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026139hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 2.4E-62 5.1E-67 446.2 27.1 241 2-242 103-343 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 2.1E-61 4.6E-66 430.1 27.0 224 2-241 25-248 (322)
3 COG0142 IspA Geranylgeranyl py 100.0 1.8E-61 3.9E-66 430.5 26.2 223 4-242 25-249 (322)
4 TIGR02748 GerC3_HepT heptapren 100.0 3.2E-61 6.9E-66 428.7 26.3 221 3-242 25-245 (319)
5 PRK10888 octaprenyl diphosphat 100.0 4.8E-61 1E-65 427.8 26.2 221 3-242 26-246 (323)
6 CHL00151 preA prenyl transfera 100.0 1E-60 2.3E-65 426.1 25.9 223 3-241 27-249 (323)
7 PLN02857 octaprenyl-diphosphat 100.0 1.9E-60 4.2E-65 433.8 23.8 227 2-241 116-342 (416)
8 PRK10581 geranyltranstransfera 100.0 3.2E-59 7E-64 411.8 24.0 217 6-242 29-258 (299)
9 cd00685 Trans_IPPS_HT Trans-Is 100.0 1.2E-57 2.6E-62 395.4 26.2 219 5-241 2-223 (259)
10 PF00348 polyprenyl_synt: Poly 100.0 5.5E-57 1.2E-61 391.4 21.6 212 11-242 3-221 (260)
11 KOG0776 Geranylgeranyl pyropho 100.0 2.3E-53 4.9E-58 376.6 20.2 220 5-242 91-316 (384)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 8.1E-44 1.8E-48 303.8 23.3 197 26-240 1-198 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 1.7E-39 3.8E-44 268.1 13.4 213 6-241 20-233 (322)
14 KOG0711 Polyprenyl synthetase 100.0 7.8E-39 1.7E-43 275.1 15.0 225 5-243 36-270 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 1.1E-22 2.3E-27 170.5 20.7 170 63-241 13-185 (243)
16 PF07307 HEPPP_synt_1: Heptapr 98.1 0.00018 3.8E-09 60.5 15.0 95 61-163 34-128 (212)
17 TIGR01559 squal_synth farnesyl 96.5 0.058 1.3E-06 48.7 12.5 88 125-213 100-187 (336)
18 PF00494 SQS_PSY: Squalene/phy 96.1 0.11 2.4E-06 44.8 11.8 146 68-236 22-177 (267)
19 cd00683 Trans_IPPS_HH Trans-Is 95.8 0.29 6.3E-06 42.4 12.9 72 133-213 93-165 (265)
20 PLN02632 phytoene synthase 95.7 0.26 5.6E-06 44.5 12.5 88 133-236 140-229 (334)
21 TIGR03464 HpnC squalene syntha 95.5 0.24 5.3E-06 43.0 11.6 70 134-212 87-156 (266)
22 TIGR03465 HpnD squalene syntha 94.6 0.27 5.9E-06 42.7 9.1 84 133-236 85-168 (266)
23 cd00687 Terpene_cyclase_nonpla 93.2 3.1 6.8E-05 36.4 13.3 89 124-214 127-220 (303)
24 PRK12884 ubiA prenyltransferas 90.1 12 0.00026 32.5 15.2 156 63-241 40-198 (279)
25 cd00868 Terpene_cyclase_C1 Ter 85.7 22 0.00047 30.4 13.6 87 126-214 122-214 (284)
26 PRK12882 ubiA prenyltransferas 85.2 24 0.00052 30.6 16.3 55 64-118 42-99 (276)
27 PF03936 Terpene_synth_C: Terp 80.0 18 0.00038 30.7 9.4 86 127-213 138-228 (270)
28 COG1562 ERG9 Phytoene/squalene 79.6 8.9 0.00019 33.9 7.5 85 132-235 102-186 (288)
29 PRK12871 ubiA prenyltransferas 76.5 54 0.0012 29.0 12.6 46 72-118 54-113 (297)
30 PRK09573 (S)-2,3-di-O-geranylg 75.9 53 0.0011 28.6 15.7 55 63-117 40-97 (279)
31 PLN00012 chlorophyll synthetas 74.6 69 0.0015 29.4 12.0 46 63-108 126-174 (375)
32 PRK12883 ubiA prenyltransferas 71.5 68 0.0015 27.8 12.2 52 65-116 42-96 (277)
33 PRK07566 bacteriochlorophyll/c 70.7 77 0.0017 28.2 13.9 50 67-116 72-124 (314)
34 PRK13591 ubiA prenyltransferas 70.3 81 0.0017 28.2 12.7 29 202-241 194-222 (307)
35 PRK12872 ubiA prenyltransferas 69.5 75 0.0016 27.5 14.2 34 198-242 172-205 (285)
36 PF06783 UPF0239: Uncharacteri 68.6 7.4 0.00016 27.8 3.3 25 185-209 14-38 (85)
37 PRK10581 geranyltranstransfera 66.2 78 0.0017 28.0 10.2 60 64-123 207-278 (299)
38 TIGR01474 ubiA_proteo 4-hydrox 64.1 99 0.0022 26.9 15.8 56 63-118 43-103 (281)
39 TIGR02056 ChlG chlorophyll syn 63.3 1.1E+02 0.0023 27.1 15.2 51 66-116 60-113 (306)
40 PF01040 UbiA: UbiA prenyltran 62.9 90 0.002 26.1 17.1 150 70-241 33-189 (257)
41 PRK13105 ubiA prenyltransferas 60.9 18 0.00038 31.9 5.0 33 199-242 172-204 (282)
42 TIGR01476 chlor_syn_BchG bacte 57.5 1.3E+02 0.0028 26.1 12.9 51 66-116 44-97 (283)
43 COG0382 UbiA 4-hydroxybenzoate 54.8 1.5E+02 0.0032 25.9 17.0 156 62-241 49-210 (289)
44 cd00684 Terpene_cyclase_plant_ 54.0 2.1E+02 0.0046 27.5 12.1 90 124-214 354-448 (542)
45 PRK10888 octaprenyl diphosphat 48.3 1.3E+02 0.0028 26.9 8.6 42 179-222 56-97 (323)
46 PRK06080 1,4-dihydroxy-2-napht 42.4 2.3E+02 0.005 24.6 9.2 82 155-238 2-90 (293)
47 PRK13595 ubiA prenyltransferas 38.9 70 0.0015 28.4 5.3 58 171-241 155-212 (292)
48 PRK13387 1,4-dihydroxy-2-napht 38.2 91 0.002 27.8 6.0 61 155-215 2-67 (317)
49 PRK12870 ubiA 4-hydroxybenzoat 38.2 2.8E+02 0.006 24.3 14.2 57 63-119 49-110 (290)
50 PRK13105 ubiA prenyltransferas 38.1 95 0.0021 27.3 6.0 58 62-119 162-220 (282)
51 cd00685 Trans_IPPS_HT Trans-Is 37.8 89 0.0019 26.7 5.7 38 183-222 34-72 (259)
52 PRK12848 ubiA 4-hydroxybenzoat 37.7 2.7E+02 0.0059 24.1 15.1 52 66-117 48-104 (282)
53 KOG1345 Serine/threonine kinas 35.5 24 0.00053 31.4 1.8 21 62-82 127-147 (378)
54 PF00348 polyprenyl_synt: Poly 35.3 1.6E+02 0.0035 25.1 7.0 45 176-222 22-66 (260)
55 PRK12878 ubiA 4-hydroxybenzoat 34.0 1.4E+02 0.003 26.7 6.4 86 154-240 28-124 (314)
56 cd00867 Trans_IPPS Trans-Isopr 32.2 1.6E+02 0.0035 24.3 6.4 47 174-222 5-51 (236)
57 PRK09573 (S)-2,3-di-O-geranylg 30.7 3.5E+02 0.0077 23.3 9.5 77 156-235 3-82 (279)
58 PRK13595 ubiA prenyltransferas 30.0 3.9E+02 0.0086 23.7 8.8 77 156-235 12-92 (292)
59 PRK07566 bacteriochlorophyll/c 29.4 93 0.002 27.7 4.6 54 63-116 192-246 (314)
60 TIGR02748 GerC3_HepT heptapren 29.1 1.1E+02 0.0024 27.2 5.0 42 180-223 56-97 (319)
61 PRK12884 ubiA prenyltransferas 29.0 3.7E+02 0.0081 23.0 8.3 77 156-235 4-82 (279)
62 TIGR01476 chlor_syn_BchG bacte 28.3 1.4E+02 0.0029 26.0 5.4 49 65-113 166-215 (283)
63 PRK04375 protoheme IX farnesyl 27.8 4.2E+02 0.009 23.2 9.1 92 148-240 2-96 (296)
64 PRK12882 ubiA prenyltransferas 27.6 3.8E+02 0.0083 23.0 8.1 79 155-236 3-84 (276)
65 PRK12875 ubiA prenyltransferas 25.9 1.4E+02 0.0031 26.2 5.0 43 70-112 175-218 (282)
66 PRK12875 ubiA prenyltransferas 25.2 2.2E+02 0.0048 25.0 6.1 61 156-216 8-74 (282)
67 PRK13362 protoheme IX farnesyl 24.8 4.9E+02 0.011 23.0 13.1 54 66-119 53-111 (306)
68 KOG3330 Transport protein part 24.8 2.2E+02 0.0048 23.0 5.4 37 185-229 39-75 (183)
69 PRK12883 ubiA prenyltransferas 24.6 4.5E+02 0.0098 22.6 8.5 78 155-235 2-82 (277)
70 TIGR02056 ChlG chlorophyll syn 24.2 1.9E+02 0.0042 25.5 5.7 52 64-115 187-239 (306)
71 TIGR01473 cyoE_ctaB protoheme 24.1 2.4E+02 0.0052 24.4 6.2 80 159-240 3-87 (280)
72 PLN00012 chlorophyll synthetas 24.0 3.1E+02 0.0066 25.2 7.0 79 155-236 84-169 (375)
73 PRK12869 ubiA protoheme IX far 23.7 4.8E+02 0.01 22.6 9.4 77 157-234 3-82 (279)
74 PRK06080 1,4-dihydroxy-2-napht 23.4 3.4E+02 0.0074 23.5 7.0 55 62-116 170-225 (293)
75 KOG1166 Mitotic checkpoint ser 23.2 45 0.00098 34.6 1.5 36 62-97 800-836 (974)
76 PRK12392 bacteriochlorophyll c 23.1 4.8E+02 0.01 23.4 8.0 82 155-240 11-100 (331)
77 TIGR01475 ubiA_other putative 22.5 5.1E+02 0.011 22.4 15.1 50 63-112 39-93 (282)
78 PF05392 COX7B: Cytochrome C o 21.8 97 0.0021 21.8 2.5 23 91-115 29-51 (80)
79 PLN02878 homogentisate phytylt 21.3 52 0.0011 29.0 1.3 37 195-242 164-200 (280)
80 PRK12869 ubiA protoheme IX far 21.3 4.5E+02 0.0098 22.8 7.3 57 62-118 38-99 (279)
81 PF06304 DUF1048: Protein of u 20.8 57 0.0012 24.3 1.3 23 201-223 45-67 (103)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=2.4e-62 Score=446.22 Aligned_cols=241 Identities=83% Similarity=1.163 Sum_probs=216.3
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+..|.+.++++|++..|.+|||+||+|++++++++|.+.++..+....+..+.+..++++.+|+++|+||+|||||||
T Consensus 103 v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDD 182 (422)
T PLN02890 103 VVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDD 182 (422)
T ss_pred HccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 45678999999999998766799999999999999998653221000000001123456789999999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|++|||+||+|.+||++.||++||||+++|+..+++..+.++++.+++++..+++||++|+.+..+...++++|++
T Consensus 183 IiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~ 262 (422)
T PLN02890 183 VLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDYYMQ 262 (422)
T ss_pred cccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999988777889999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
++.+|||+||+.||++|++++|++++..+.+++||+++|++|||+||++||+++++.+||+.++||++||+|+|++++++
T Consensus 263 ~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~ 342 (422)
T PLN02890 263 KTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAME 342 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 343 ~ 343 (422)
T PLN02890 343 E 343 (422)
T ss_pred c
Confidence 3
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=2.1e-61 Score=430.09 Aligned_cols=224 Identities=46% Similarity=0.698 Sum_probs=209.8
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.+.++++|++..| |||+||.|++++++++|+... ..+..+.+|+++|+||+|||||||
T Consensus 25 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~~~~~A~avEliH~asLiHDD 88 (322)
T TIGR02749 25 VGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPRHRRLAEITEMIHTASLVHDD 88 (322)
T ss_pred hCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHHHHHHHHHHHHHHHHHHHHcc
Confidence 3567889999999999988 999999999999999875422 124578899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|.+|||+||+|.+||++.||++||||+++|++.+++.++.++++.+++++.++++||++|+.+..+...++++|++
T Consensus 89 iiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~y~~ 168 (322)
T TIGR02749 89 VIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSDLSLEDYLE 168 (322)
T ss_pred cccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999998877666789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
++.+|||+||++||++|++++|.+++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|+|++++++
T Consensus 169 ~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 169 KSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-61 Score=430.49 Aligned_cols=223 Identities=35% Similarity=0.521 Sum_probs=210.9
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026139 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVL 83 (243)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~ 83 (243)
+.++.+.++++|++.+| |||+||.+++++++++|..... . .+.+..+|++||+||++||||||||
T Consensus 25 ~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~------------~-~~~~~~~aaavEliH~~SLiHDDvm 89 (322)
T COG0142 25 SDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET------------G-GNDALDLAAAIELIHTASLIHDDLM 89 (322)
T ss_pred cccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc------------c-hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 67889999999999999 9999999999999999832211 1 3568999999999999999999999
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~--~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|+|++|||+||+|.+||++.||++||+|++.||+.+++..+ ..+.+.+++++..++.||.+|+.+..+. ++.++|++
T Consensus 90 D~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-~t~e~y~~ 168 (322)
T COG0142 90 DDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP-VTLEEYLR 168 (322)
T ss_pred cCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC-CCHHHHHH
Confidence 99999999999999999999999999999999999999877 8999999999999999999999998775 89999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||+++|++|+++++++++..+.+++||+++|++|||+||++|+++++..+||++|+|+++||+|||++++++
T Consensus 169 ~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~ 248 (322)
T COG0142 169 VIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALE 248 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 249 ~ 249 (322)
T COG0142 249 K 249 (322)
T ss_pred c
Confidence 5
No 4
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=3.2e-61 Score=428.74 Aligned_cols=221 Identities=31% Similarity=0.499 Sum_probs=207.8
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+.+|.+.+++.|++..| |||+||.|++++++++|.+. ++++.+|+++|+||+||||||||
T Consensus 25 ~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~-----------------~~~~~~A~aiEliH~asLiHDDI 85 (319)
T TIGR02748 25 QAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL-----------------DAIKHVAVALELIHMASLVHDDV 85 (319)
T ss_pred ccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHhccc
Confidence 455788999999999988 99999999999999876432 35688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 162 (243)
+|+|..|||+||+|.+||++.||++||||++++++.+++.++.++++.+++++.++++||++|+.+..+...++++|+++
T Consensus 86 ~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~Y~~~ 165 (319)
T TIGR02748 86 IDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFDQNLRTYLRR 165 (319)
T ss_pred cCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888889999999999999999999998876767899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
+++|||+||++||.+|++++|.+++..+.+++||+++|++|||+||++||+++++.+||+.++||++||.|+|++++++.
T Consensus 166 i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 166 IKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999863
No 5
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=4.8e-61 Score=427.76 Aligned_cols=221 Identities=35% Similarity=0.535 Sum_probs=208.2
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+..|.+.++.+|++..| |||+||.|++++++++|++. +..+.+|+++|+||+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~~~~~A~avEllH~asLiHDDI 86 (323)
T PRK10888 26 NSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NAHVTIAALIEFIHTATLLHDDV 86 (323)
T ss_pred cccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHHHHHHHHccc
Confidence 355678999999999988 99999999999999997643 24678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 162 (243)
||+|++|||+||+|.+||++.||++||||++++++.+++.++.++++.+++++..+++||.+|+.+..+...++++|+++
T Consensus 87 ~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 166 (323)
T PRK10888 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRV 166 (323)
T ss_pred ccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888889999999999999999999998776667899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
+.+|||+||++||.+|++++|.+++..+.+++||+++|++|||+||++||+++++.+||+.++||++||+|||+++++++
T Consensus 167 i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~ 246 (323)
T PRK10888 167 IYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHH 246 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 6
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1e-60 Score=426.10 Aligned_cols=223 Identities=44% Similarity=0.642 Sum_probs=208.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+.+|.+.++++|++..| |||+||.|++++++++|++.+. ...++.+|+++|++|+||||||||
T Consensus 27 ~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~~~~~~~A~aiEllH~asLiHDDi 90 (323)
T CHL00151 27 GSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------KTSQQRLAEITEIIHTASLVHDDV 90 (323)
T ss_pred CCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------cHHHHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999988 9999999999999999875322 134678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 162 (243)
||+|.+|||+||+|.+||++.||++||||+++|+..+++..+..+.+.+++++.++++||..|.....+...+.++|+++
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~yl~~ 170 (323)
T CHL00151 91 IDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTTLSILNYIEK 170 (323)
T ss_pred ccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999987766667899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
+.+|||+||++||++|++++|.+++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|||++++++
T Consensus 171 i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~ 249 (323)
T CHL00151 171 SFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALT 249 (323)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 7
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=1.9e-60 Score=433.78 Aligned_cols=227 Identities=44% Similarity=0.673 Sum_probs=209.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.+.++++|++..| |||+||.|+++++++++..... .+..++.+.+|+++|+||+|||||||
T Consensus 116 ~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~~~~~~lAaaiEliH~ASLIHDD 182 (416)
T PLN02857 116 VGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELTTEHRRLAEITEMIHTASLIHDD 182 (416)
T ss_pred hccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------CcchHHHHHHHHHHHHHHHHHHHHCc
Confidence 3466788999999999988 9999999999999998632110 01124678899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|.+|||+||+|.+||++.|||+||||+++|++.+++.++.++++.+++++.++++||+.|+.+..+...++++|++
T Consensus 183 I~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~Gei~q~~~~~~~~~s~~~Yl~ 262 (416)
T PLN02857 183 VLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQASSLFDCDVTLDEYLL 262 (416)
T ss_pred cccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhHHHHHhcccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999998877766789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
++++|||+||+.||++|+++++++++..+.+++||+++|++|||+||++||+++++.+||+.++||++||.|+|++++++
T Consensus 263 ~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~ 342 (416)
T PLN02857 263 KSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 342 (416)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
No 8
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=3.2e-59 Score=411.82 Aligned_cols=217 Identities=28% Similarity=0.405 Sum_probs=195.4
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.+.++++|++..| |||+||.|++++++++|++. +....+|+++|+||+|||||||| |
T Consensus 29 ~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLiHDDip~~ 89 (299)
T PRK10581 29 NTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_pred chHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 567999999999988 99999999999999998542 24678999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc--------HHHHHHHHHH--HHHHHHHhHHhhcccCCCC
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--------TEVVTLLATV--VEHLVTGETMQMTTSSDQR 153 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~--------~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~ 153 (243)
|+|++|||+||+|.+||++.||++||+|++.|++.+++... .++++.++++ +..++.||.+|+.+... .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~-~ 168 (299)
T PRK10581 90 DDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGK-Q 168 (299)
T ss_pred cCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCC-C
Confidence 99999999999999999999999999999999999887532 2345555554 56799999999987654 6
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 154 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
.+.++|++|+++|||+||.+||.+|++++|.+ ++..+.+++||+++|++|||+||++|++++++.+||+.++|+++||+
T Consensus 169 ~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~ 248 (299)
T PRK10581 169 VPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248 (299)
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCC
Confidence 78999999999999999999999999999976 45789999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 026139 233 LSLLFIASEI 242 (243)
Q Consensus 233 T~p~~~al~~ 242 (243)
|||+++++++
T Consensus 249 T~p~l~~~e~ 258 (299)
T PRK10581 249 TYPALLGLEQ 258 (299)
T ss_pred CHHHHHHHHH
Confidence 9999999874
No 9
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=1.2e-57 Score=395.40 Aligned_cols=219 Identities=38% Similarity=0.540 Sum_probs=206.0
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D 84 (243)
..+.+.++++|++..| ||++||.+++++++++|++. .+.+..+|+++|++|+||||||||+|
T Consensus 2 ~~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~----------------~~~~~~la~aiEllh~asLIhDDI~D 63 (259)
T cd00685 2 EVELLREALRYLLLAG--GKRLRPLLVLLAARALGGPE----------------LEAALRLAAAIELLHTASLVHDDVMD 63 (259)
T ss_pred CchHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCc----------------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4578999999998878 99999999999999998653 13578899999999999999999999
Q ss_pred CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 85 DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 85 ~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~---~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
+|..|||+||+|.+||+..|||+||+|++.+++.+++..+ .++++.+++++..++.||++|+.+.....+++++|++
T Consensus 64 ~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~ 143 (259)
T cd00685 64 NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLR 143 (259)
T ss_pred CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999998776 7899999999999999999999987766789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+.+|||+||.++|.+|+++++++++..+.+++||.++|++|||+||++|++++++.+||+.++||++||+|||++++++
T Consensus 144 ~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l~ 223 (259)
T cd00685 144 IIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLALR 223 (259)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999873
No 10
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=5.5e-57 Score=391.44 Aligned_cols=212 Identities=33% Similarity=0.515 Sum_probs=191.9
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 026139 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (243)
Q Consensus 11 ~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~~RR 90 (243)
+++.|++..| |||+||.|++++++++|++ .+.+..+|+++|+||+||||||||+|+|.+||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 5677777878 9999999999999999843 25688999999999999999999999999999
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC----cH---HHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHH
Q 026139 91 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NT---EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 163 (243)
Q Consensus 91 g~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~----~~---~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~ 163 (243)
|+||+|.+||++.||++||+|+++|+..+++.. +. .+.+.+...+.....||..|+.+... ..++++|++|+
T Consensus 64 G~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i~ 142 (260)
T PF00348_consen 64 GKPTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEII 142 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHHH
T ss_pred CCccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHHH
Confidence 999999999999999999999999999998876 22 34445555566677778888877644 78999999999
Q ss_pred hhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 164 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 164 ~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
++|||+||++||++|+++++.+++..+.+++||+++|++|||+||++|++++++..||+.++||++||+|||+++++++
T Consensus 143 ~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~ 221 (260)
T PF00348_consen 143 RLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALER 221 (260)
T ss_dssp HHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999974
No 11
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.3e-53 Score=376.64 Aligned_cols=220 Identities=45% Similarity=0.629 Sum_probs=205.2
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.+....+|.+..+ ||++||.+|+++|++++... ...++++|+++||||++|||||||
T Consensus 91 ~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~----------------~~~q~~~A~i~EMIHtaSLIHDDv~~ 152 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGD----------------ESSQRSLAEIVEMIHTASLIHDDVPC 152 (384)
T ss_pred ccchhHHHHHHHHHhc--ccccCchhhhhHHHhccccc----------------cHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3567778888999989 99999999999999998311 235789999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccC---CC-CCCHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS---DQ-RCSMDY 158 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~---~~-~~~~~~ 158 (243)
||++.+|||+||.|..||+++|||+||||+++|++.++.+.|+.+++.+++++.++..|++.+....+ .. ...++.
T Consensus 153 mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~~~~e~ 232 (384)
T KOG0776|consen 153 MDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGLDLDDVGLEY 232 (384)
T ss_pred ccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccccccCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987763 22 347899
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHH
Q 026139 159 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFI 238 (243)
Q Consensus 159 y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~ 238 (243)
|..+..+|||+|++.+|++|++++|.+++..+.+++||+++|++||+.||++|+....+.+||+.+.|+..|+.|+|+++
T Consensus 233 ~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf 312 (384)
T KOG0776|consen 233 LEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLF 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhc
Q 026139 239 ASEI 242 (243)
Q Consensus 239 al~~ 242 (243)
++|+
T Consensus 313 ~~e~ 316 (384)
T KOG0776|consen 313 ALEK 316 (384)
T ss_pred hhhh
Confidence 9986
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=8.1e-44 Score=303.81 Aligned_cols=197 Identities=39% Similarity=0.569 Sum_probs=185.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhh-hchHHH
Q 026139 26 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKLA 104 (243)
Q Consensus 26 ~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~~RRg~pt~~~~-~G~~~A 104 (243)
+||.+++++++++|++. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||+..|
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a 63 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA 63 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH
Confidence 59999999999998642 457889999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCC
Q 026139 105 VLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184 (243)
Q Consensus 105 il~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~ 184 (243)
++.||+++..++..+++....++.+.+++.+.++++||.+|+.+..+...++++|.+++++|||++|..+|..++++++.
T Consensus 64 i~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~ 143 (236)
T cd00867 64 ILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA 143 (236)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc
Confidence 99999999999999988777889999999999999999999988765578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHh
Q 026139 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240 (243)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al 240 (243)
+++..+.+++||+++|++|||.||++|++++.+..|| .++||++||+|||++++.
T Consensus 144 ~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~~ 198 (236)
T cd00867 144 DDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILAR 198 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHHH
Confidence 9888999999999999999999999999999999999 999999999999999873
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-39 Score=268.14 Aligned_cols=213 Identities=20% Similarity=0.285 Sum_probs=194.5
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~ 85 (243)
...|.++..|++.-+ ||.+|..|.+.....+..|. ++...+..++||+|++||+.|||.|+
T Consensus 20 ~~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P~-----------------dkLaii~~ivemLHNsSLLIDDIEDN 80 (322)
T KOG0777|consen 20 ESILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLPK-----------------DKLAIISQIVEMLHNSSLLIDDIEDN 80 (322)
T ss_pred HHHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCCH-----------------HHHHHHHHHHHHHhccceeecccccc
Confidence 356788999999966 99999999998888887542 34566889999999999999999999
Q ss_pred CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHHHHHh
Q 026139 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTY 164 (243)
Q Consensus 86 s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~ 164 (243)
|..|||.|+.|..||+...|++++|++.+|.+.++.+..++.+++|.+-+.+++.||.+|+.|+... +++++.|..|+-
T Consensus 81 s~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~ 160 (322)
T KOG0777|consen 81 SPLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVM 160 (322)
T ss_pred chhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998765 679999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 165 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 165 ~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
.|||.||.++.++.-.++...++ +..+-.-+|+.|||+|||+++-..+....|.+++|+.|||.++|+++|+.
T Consensus 161 ~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~ 233 (322)
T KOG0777|consen 161 NKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALK 233 (322)
T ss_pred HhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhh
Confidence 99999999999999999876555 56677899999999999999988777889999999999999999999985
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.8e-39 Score=275.13 Aligned_cols=225 Identities=22% Similarity=0.157 Sum_probs=190.0
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D 84 (243)
..+.+.+.+.|.+. | ||..|++.++.+.+++..+.... ++...++..++|++|++++..||.|||||
T Consensus 36 a~~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~l~----------~~~~~~a~~lGw~vElLQaffLiaDDIMD 102 (347)
T KOG0711|consen 36 ATEWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRKLD----------EEELQLALILGWCVELLQAFFLVADDIMD 102 (347)
T ss_pred HHHHHHHHHhccCc-c--cccccchhHHHHHHHhcCccCCC----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34678888999975 8 99999999999999998754431 35567788899999999999999999999
Q ss_pred CCCCCCCCCchhhhhchH-HHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHhHHhhcccC--CCCCCH
Q 026139 85 DADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALAS-----LKNTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSM 156 (243)
Q Consensus 85 ~s~~RRg~pt~~~~~G~~-~Ail~Gd~ll~~a~~~l~~-----~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~~~ 156 (243)
+|.+|||+||||.+-|++ .|||-+-+|-+.-..+|.+ ....++++.|.+....+..||+++..... ....|+
T Consensus 103 nS~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl 182 (347)
T KOG0711|consen 103 NSKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSL 182 (347)
T ss_pred cccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhH
Confidence 999999999999999995 5888655554444455542 22468899999999999999777654332 235688
Q ss_pred HHHHHHHhhhhHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 157 DYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 157 ~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
+.|..|+.+|||.| |.+|.+++.+++| ...+......++...+|..||++|||+|++||++.+||- |+||+++||||
T Consensus 183 ~~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgki-GtDIqDnKCsW 261 (347)
T KOG0711|consen 183 EKYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGKI-GTDIQDNKCSW 261 (347)
T ss_pred HHHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCCC-CCccccCceee
Confidence 99999999999999 9999999999999 556677888999999999999999999999999999995 99999999999
Q ss_pred HHHHHhhcC
Q 026139 235 LLFIASEIL 243 (243)
Q Consensus 235 p~~~al~~~ 243 (243)
.+++|++++
T Consensus 262 lv~~al~~~ 270 (347)
T KOG0711|consen 262 LVVKALQRA 270 (347)
T ss_pred ehHHHHhhc
Confidence 999999863
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.91 E-value=1.1e-22 Score=170.46 Aligned_cols=170 Identities=32% Similarity=0.467 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhh---hchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 139 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~~RRg~pt~~~~---~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 139 (243)
..++.++|.+|+++++||||+|++..||+.|+++.. +|...+++.|+.++..++..+.......+...+.+.+.+++
T Consensus 13 ~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (243)
T cd00385 13 SRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLL 92 (243)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999999999988 99999999999999999998888767888999999999999
Q ss_pred HHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCcccc
Q 026139 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 219 (243)
Q Consensus 140 ~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~ 219 (243)
.||..|+.+.....++.++|.++.+.|||.++...+..++.....+....+.+..++..+|.++|+.||+.|+..+....
T Consensus 93 ~g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~ 172 (243)
T cd00385 93 EGQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG 172 (243)
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh
Confidence 99999999876556899999999999999999999999988887777778899999999999999999999998764221
Q ss_pred CCCchhHhhcccchHHHHHHhh
Q 026139 220 GKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 220 gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
+|++|+|.+++.+
T Consensus 173 ---------~~~~~l~~~~~~~ 185 (243)
T cd00385 173 ---------EGKCTLPVLYALE 185 (243)
T ss_pred ---------CCchHHHHHHHHH
Confidence 5899999998875
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=98.12 E-value=0.00018 Score=60.52 Aligned_cols=95 Identities=18% Similarity=0.228 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q 026139 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 140 (243)
Q Consensus 61 ~~~~lA~aiEliH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (243)
+....+.++-++|+|...||.|-. +..+++.. .. .-...||+|||+-++-+.+|++.++..+++.+++++.++.+
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~-~k---~RQLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiNE 108 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEES-SK---ERQLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEINE 108 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHH-HH---hhhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 456688899999999999999966 22222211 11 12579999999999999999999999999999999999999
Q ss_pred HhHHhhcccCCCCCCHHHHHHHH
Q 026139 141 GETMQMTTSSDQRCSMDYYMQKT 163 (243)
Q Consensus 141 Gq~~d~~~~~~~~~~~~~y~~~~ 163 (243)
....=-... ..+.++|++.+
T Consensus 109 ~K~~ly~~~---~~~~e~~~~~~ 128 (212)
T PF07307_consen 109 LKMSLYQKK---KETAEEYLESV 128 (212)
T ss_pred HHHHHHHhh---hCCHHHHHHHH
Confidence 887543322 24677776654
No 17
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=96.51 E-value=0.058 Score=48.70 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Q 026139 125 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQ 204 (243)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQ 204 (243)
+...+.+.+.+..|..|...++........|.++|.+-+++=-|..=.+.+.+-+..+-.++. .....+++..+|+++|
T Consensus 100 ~~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~~~~~~~~-~~~~~~~A~~lG~aLQ 178 (336)
T TIGR01559 100 PKYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVASGFEDPS-LGESEALSNSMGLFLQ 178 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhhcCCCCcc-hhhhHHHHHHHHHHHH
Confidence 356667777888899999888765422126888888887777666544444443322112222 1234678999999999
Q ss_pred HHHhhhccc
Q 026139 205 LIDDVLDFT 213 (243)
Q Consensus 205 i~DD~~D~~ 213 (243)
+.|=+.|+.
T Consensus 179 lTNIlRDv~ 187 (336)
T TIGR01559 179 KTNIIRDYL 187 (336)
T ss_pred HHHHHHHHH
Confidence 999888873
No 18
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=96.10 E-value=0.11 Score=44.82 Aligned_cols=146 Identities=18% Similarity=0.101 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhccCCCCC---CCCCCchhhhhchH-H-----HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q 026139 68 ITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNK-L-----AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 138 (243)
Q Consensus 68 aiEliH~asLIhDDI~D~s~~---RRg~pt~~~~~G~~-~-----Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~ 138 (243)
++-.+.++....|||.|.... ++-+=.+|+..=+. . ......--+..++..+.... .+-.+.+.++
T Consensus 22 ~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~-----~l~~~~l~~l 96 (267)
T PF00494_consen 22 AVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRY-----GLPREPLLEL 96 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCS-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHH-----hhhHHHHHHH
Confidence 455688888999999988662 11111122211000 0 01111222333333332221 1344567888
Q ss_pred HHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccc
Q 026139 139 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 218 (243)
Q Consensus 139 ~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~ 218 (243)
..|...|+.... ..|.+++..-++.-+|++..+.+.+...- .+. ......+.++|.++|+.|=+.|+
T Consensus 97 i~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~------ 163 (267)
T PF00494_consen 97 IDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI------ 163 (267)
T ss_dssp HHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH------
T ss_pred HHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh------
Confidence 999999987643 45888998888888888877666553221 222 35677889999999999988887
Q ss_pred cCCCchhH-hhcccchHHH
Q 026139 219 LGKGSLSD-IRHVIYLSLL 236 (243)
Q Consensus 219 ~gk~~~~D-l~~gk~T~p~ 236 (243)
..| +..|++-+|.
T Consensus 164 -----~~D~~~~gR~ylP~ 177 (267)
T PF00494_consen 164 -----PEDALRRGRIYLPL 177 (267)
T ss_dssp -----HHH-HHTT---S-H
T ss_pred -----HHHHHhcccccCCc
Confidence 466 6677766664
No 19
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=95.77 E-value=0.29 Score=42.38 Aligned_cols=72 Identities=19% Similarity=0.261 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 026139 133 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (243)
Q Consensus 133 ~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D 211 (243)
+.+.++++|...|+... ...+.+++..-++.-.|+...+.+.+ ++. .+ +....++.++|.|+|+.|=+.|
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~----~~~~~~A~~lG~AlqltnilRd 163 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD----EAALERARALGLALQLTNILRD 163 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC----hHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999998853 34577888777777777665555543 232 22 2356789999999999998888
Q ss_pred cc
Q 026139 212 FT 213 (243)
Q Consensus 212 ~~ 213 (243)
+-
T Consensus 164 v~ 165 (265)
T cd00683 164 VG 165 (265)
T ss_pred HH
Confidence 73
No 20
>PLN02632 phytoene synthase
Probab=95.65 E-value=0.26 Score=44.46 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=60.2
Q ss_pred HHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhHHHhhh
Q 026139 133 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVL 210 (243)
Q Consensus 133 ~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~~ 210 (243)
+.+.+++.|..+|+... ...|.+++..-++.-.|.+..+++.+ ++..+ ....+.+...+.++|+|+|+.|=+.
T Consensus 140 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILR 214 (334)
T PLN02632 140 QPFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILR 214 (334)
T ss_pred HHHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999888753 34588888877777777776665554 33222 1223456778999999999999888
Q ss_pred cccCCccccCCCchhHhhcccchHHH
Q 026139 211 DFTGTSASLGKGSLSDIRHVIYLSLL 236 (243)
Q Consensus 211 D~~~~~~~~gk~~~~Dl~~gk~T~p~ 236 (243)
|+ +.|+..|++-+|.
T Consensus 215 Dv-----------~eD~~~GRvYLP~ 229 (334)
T PLN02632 215 DV-----------GEDARRGRVYLPQ 229 (334)
T ss_pred HH-----------HHHHhCCceeCCH
Confidence 87 4556666665553
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=95.53 E-value=0.24 Score=43.04 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=49.6
Q ss_pred HHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcc
Q 026139 134 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212 (243)
Q Consensus 134 ~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~ 212 (243)
.+..++.|...|+... ...|.+++..-+++-.|+...+++.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV 156 (266)
T ss_pred HHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888887653 34588888877777777776666543 3333333 245788999999999988887
No 22
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=94.57 E-value=0.27 Score=42.65 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcc
Q 026139 133 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212 (243)
Q Consensus 133 ~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~ 212 (243)
+.+.++++|...|+... ...|.+++..-++.-.|++..+.+.+ ++..++ .....+.++|.++|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 44678889999998754 35688888888887777777666654 333332 2467789999999999988887
Q ss_pred cCCccccCCCchhHhhcccchHHH
Q 026139 213 TGTSASLGKGSLSDIRHVIYLSLL 236 (243)
Q Consensus 213 ~~~~~~~gk~~~~Dl~~gk~T~p~ 236 (243)
..|+..|++.+|.
T Consensus 156 -----------~eD~~~gR~ylP~ 168 (266)
T TIGR03465 156 -----------GEDARRGRIYLPA 168 (266)
T ss_pred -----------HHHHhCCCeecCH
Confidence 3555666666654
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=93.15 E-value=3.1 Score=36.40 Aligned_cols=89 Identities=11% Similarity=0.100 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC--CCHHHH--HHHHHHHHH
Q 026139 124 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVA--ILAFDYGKN 198 (243)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~--~~~~~~--~~l~~~g~~ 198 (243)
.......|.+.+.+.+.++..+..+... ..++.++|+++-..-.|..+.+.. +-...| -++... ..++++-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHH
Confidence 4667788888888999999988765543 357999999773333344332222 212222 344432 347778888
Q ss_pred HHHHHhHHHhhhcccC
Q 026139 199 LGLAYQLIDDVLDFTG 214 (243)
Q Consensus 199 lG~afQi~DD~~D~~~ 214 (243)
.+...-+.||+..|..
T Consensus 205 ~~~~~~l~NDl~S~~K 220 (303)
T cd00687 205 ASDAIALVNDIYSYEK 220 (303)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 9999999999999853
No 24
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=90.12 E-value=12 Score=32.53 Aligned_cols=156 Identities=13% Similarity=0.023 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC---CCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLV 139 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~ 139 (243)
.-...++=++|.+.-+.+|+.|.+. .|+.+|-...+...+.+...+-.+...+.-...-. +....-.. +....
T Consensus 40 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~~---~~~~~ 115 (279)
T PRK12884 40 LLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLVV---ILVSV 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHH---HHHHH
Confidence 4455677899999999999977543 35666666555556667666655554444222222 22211110 00111
Q ss_pred HHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCcccc
Q 026139 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 219 (243)
Q Consensus 140 ~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~ 219 (243)
.+=..-...+. ..-..+.. .|..+..+...|....+......-.+.-+..-....+++..|+.|..+
T Consensus 116 ~~~~Ys~~lK~--~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~----- 182 (279)
T PRK12884 116 LGILYNWKLKE--YGLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG----- 182 (279)
T ss_pred HHHHHHHhhcc--ccchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh-----
Confidence 11111111111 11111111 123344555555554443322222222334445566777888888754
Q ss_pred CCCchhHhhcccchHHHHHHhh
Q 026139 220 GKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 220 gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|-+.|+.|+|+.++-+
T Consensus 183 ------D~~~G~~Tl~v~~G~~ 198 (279)
T PRK12884 183 ------DRLRGARTLAILYGEK 198 (279)
T ss_pred ------HHHcCCeeechHhcHH
Confidence 5578888988887654
No 25
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=85.66 E-value=22 Score=30.42 Aligned_cols=87 Identities=11% Similarity=0.038 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC--CCH---HHHHHHHHHHHHH
Q 026139 126 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTA---EVAILAFDYGKNL 199 (243)
Q Consensus 126 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~--~~~---~~~~~l~~~g~~l 199 (243)
.....|.+.+...+.+...+..+.. ...++.++|+.+-..-.|..+.+.+.. ...| -++ .....+.++....
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~--~~~g~~l~~~~~~~~~~~~~l~~~~ 199 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSF--LGMGDILPEEAFEWLPSYPKLVRAS 199 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHH--HHcCCCCCHHHHHHhhhhHHHHHHH
Confidence 6677788888888899888877653 346899999988544444433222221 1112 333 3456777788888
Q ss_pred HHHHhHHHhhhcccC
Q 026139 200 GLAYQLIDDVLDFTG 214 (243)
Q Consensus 200 G~afQi~DD~~D~~~ 214 (243)
+...-+.||+..|..
T Consensus 200 ~~~~~l~NDl~S~~k 214 (284)
T cd00868 200 STIGRLLNDIASYEK 214 (284)
T ss_pred HHHHHHhccchHHHH
Confidence 888899999988853
No 26
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=85.25 E-value=24 Score=30.61 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCC---CCCCCCCchhhhhchHHHHHHHHHHHHHHHHH
Q 026139 64 CIAEITEMIHVASLLHDDVLDDA---DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D~s---~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~ 118 (243)
-+..+.=++|.++-+.+|+.|.+ ..|+.+|-..-+...+.|...+-.+...++-.
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~ 99 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 44556678999999999997753 34677887777777888888887777666543
No 27
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=79.95 E-value=18 Score=30.70 Aligned_cols=86 Identities=9% Similarity=0.014 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG----QTAEVAILAFDYGKNLGL 201 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~----~~~~~~~~l~~~g~~lG~ 201 (243)
..+.|.+.+.....|...+..+.... .++.++|+++-+.-+|..+.+.+..-.+ .. .+++..+.-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 45558888888888888887766443 6899999988555555544433332111 21 111222221125566666
Q ss_pred HHhHHHhhhccc
Q 026139 202 AYQLIDDVLDFT 213 (243)
Q Consensus 202 afQi~DD~~D~~ 213 (243)
.--+.||+..|.
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 666779999883
No 28
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=79.57 E-value=8.9 Score=33.89 Aligned_cols=85 Identities=16% Similarity=0.148 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 026139 132 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (243)
Q Consensus 132 ~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D 211 (243)
.+.+.++..|...|+....- .+++++..-+.+-.|..-. .+..+++-.+ ..........+|.++|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y--~~~~eL~~Yc~~vAg~vG~---l~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY--LDFEELEEYCYGVAGAVGL---LLARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCHHHHHHHHHHhHHHHHH---HHHHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999876432 3455554444333333222 2223333322 22344455669999999998888
Q ss_pred ccCCccccCCCchhHhhcccchHH
Q 026139 212 FTGTSASLGKGSLSDIRHVIYLSL 235 (243)
Q Consensus 212 ~~~~~~~~gk~~~~Dl~~gk~T~p 235 (243)
+ +.|.+.|++-+|
T Consensus 174 v-----------~eD~~~GrvylP 186 (288)
T COG1562 174 V-----------GEDRRRGRVYLP 186 (288)
T ss_pred h-----------HHHHhCCcccCC
Confidence 7 456666666666
No 29
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=76.54 E-value=54 Score=29.01 Aligned_cols=46 Identities=11% Similarity=-0.017 Sum_probs=29.3
Q ss_pred HHHHHHHHhhccCCCC-----CC---------CCCCchhhhhchHHHHHHHHHHHHHHHHH
Q 026139 72 IHVASLLHDDVLDDAD-----TR---------RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (243)
Q Consensus 72 iH~asLIhDDI~D~s~-----~R---------Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~~ 118 (243)
.|.+. ++.|+.|.+. .| +.+|....+...+.|...+-.+...++-.
T Consensus 54 ~~ag~-~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 54 FEAGF-VLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHHH-HHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 46664 9999966421 11 46777766777777877776666655543
No 30
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=75.92 E-value=53 Score=28.55 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCC---CCCCCchhhhhchHHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRACV 117 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~~---RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~ 117 (243)
.-...++=++|.+.-+.+|+.|-+.- ++.+|-...+...+.|...+-.+...+.-
T Consensus 40 ~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 40 ILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 34455667999999999999886443 36778777777888888888777766653
No 31
>PLN00012 chlorophyll synthetase; Provisional
Probab=74.58 E-value=69 Score=29.43 Aligned_cols=46 Identities=7% Similarity=-0.091 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCC---CCCCchhhhhchHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAG 108 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ail~G 108 (243)
+....+.=+++.++-+..|+.|.+.-| +.+|..-.....+.++..+
T Consensus 126 l~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 126 VCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHH
Confidence 334445678889999999998864323 4566665556666666633
No 32
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=71.46 E-value=68 Score=27.81 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCC---CCCCCCchhhhhchHHHHHHHHHHHHHHH
Q 026139 65 IAEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 65 lA~aiEliH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
...+.=+.|.+.-+.+|+.|-+. .|+.+|-..-+...+.+...+-.+...+.
T Consensus 42 ~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 42 IFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 34456667889999999977433 45566666656667777776666655554
No 33
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=70.70 E-value=77 Score=28.17 Aligned_cols=50 Identities=8% Similarity=-0.119 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhccCCCCCC---CCCCchhhhhchHHHHHHHHHHHHHHH
Q 026139 67 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 67 ~aiEliH~asLIhDDI~D~s~~R---Rg~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
.+.-++|.++-+.+|+.|.+.-| +.+|...-+...+.+...+-.++..++
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 44567999999999999965434 556766666677777777766666555
No 34
>PRK13591 ubiA prenyltransferase; Provisional
Probab=70.33 E-value=81 Score=28.22 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=22.0
Q ss_pred HHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 202 AYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 202 afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
...+.+|+.|..+ |.++|+.|+|+.++-+
T Consensus 194 ~~~iindirDiEG-----------Dr~~G~kTLPV~lG~~ 222 (307)
T PRK13591 194 INSCVYDFKDVKG-----------DTLAGIKTLPVSLGEQ 222 (307)
T ss_pred HHHHHHHhhhhHh-----------HHHcCCeeEEEEECHH
Confidence 3457899999854 5678999999877654
No 35
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=69.46 E-value=75 Score=27.50 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=26.3
Q ss_pred HHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 198 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 198 ~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
-+-...++..|+.|..+ |-+.|+.|+|+.++.++
T Consensus 172 l~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~lG~~~ 205 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG-----------DRKSGLKTLPIVLGKER 205 (285)
T ss_pred HHHHHHHHHHhcccchh-----------HHHcCCcccchhcchHH
Confidence 34567889999999865 45788999999887653
No 36
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=68.59 E-value=7.4 Score=27.84 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHhh
Q 026139 185 TAEVAILAFDYGKNLGLAYQLIDDV 209 (243)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~ 209 (243)
.+...+.+-+||..+|-.||+.==+
T Consensus 14 Eet~~e~llRYGLf~GAIFQliCil 38 (85)
T PF06783_consen 14 EETFFENLLRYGLFVGAIFQLICIL 38 (85)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788999999999999996433
No 37
>PRK10581 geranyltranstransferase; Provisional
Probab=66.25 E-value=78 Score=28.03 Aligned_cols=60 Identities=27% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCC------------CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.|+=|.|||.|- ++.+.|++|+=..+|...|-...+-++..|.+.+..++
T Consensus 207 ~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 207 VLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3555567788899999999883 34567777776677776666666666666766666654
No 38
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=64.06 E-value=99 Score=26.95 Aligned_cols=56 Identities=14% Similarity=-0.027 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC----CC-CCCCchhhhhchHHHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~~ 118 (243)
.-...++=++|.+..+..|+.|.+. .| +.+|-..-+...+.|...+-.+...++-.
T Consensus 43 ~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l 103 (281)
T TIGR01474 43 GLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGV 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3445556789999999999977532 23 35777777777788888777666666543
No 39
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=63.35 E-value=1.1e+02 Score=27.13 Aligned_cols=51 Identities=6% Similarity=-0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCC---CCCCCCchhhhhchHHHHHHHHHHHHHHH
Q 026139 66 AEITEMIHVASLLHDDVLDDAD---TRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 66 A~aiEliH~asLIhDDI~D~s~---~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
..+.=++|.++-+++|+.|.+. ..|.+|...-+...+.+...+-.++..++
T Consensus 60 ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 60 LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 3566789999999999988653 33455665555667777777655555443
No 40
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=62.86 E-value=90 Score=26.06 Aligned_cols=150 Identities=15% Similarity=0.067 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhccCCCCCCC--C---CCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHhH
Q 026139 70 EMIHVASLLHDDVLDDADTRR--G---IGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGET 143 (243)
Q Consensus 70 EliH~asLIhDDI~D~s~~RR--g---~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~ 143 (243)
=++|.+.-+.||+.|-+.-|. + +|-...+...+.+...+-.++..+.-.....+. .-.+-.+.-.+. ...-.-
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~-~~Ys~~ 111 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG-LLYSPP 111 (257)
T ss_pred HHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHhhh
Confidence 389999999999988655554 3 344455666666666666555555432222211 111112222221 111100
Q ss_pred HhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 144 MQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 144 ~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~-~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
..+.. . .-.++. =.+..+.....+|....+.+ +...-.+.-+..-++......+|+.|+.
T Consensus 112 ~~lk~--~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~--------- 172 (257)
T PF01040_consen 112 LRLKR--R--PLWGEL------VVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIE--------- 172 (257)
T ss_pred hhhcc--e--eccchh------hHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHH---------
Confidence 01110 0 000000 01122334444444444443 2222333334467777888888999885
Q ss_pred chhHhhcccchHHHHHHhh
Q 026139 223 SLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 223 ~~~Dl~~gk~T~p~~~al~ 241 (243)
+|.+.|+.|+|+.++-+
T Consensus 173 --~D~~~g~~Tl~v~~G~~ 189 (257)
T PF01040_consen 173 --GDRKAGRRTLPVLLGEK 189 (257)
T ss_pred --HHHHcCCcchHHHHHHH
Confidence 45678889999888654
No 41
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=60.91 E-value=18 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.6
Q ss_pred HHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 199 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 199 lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
...++.+.+++.|+.+ |-++||.|+|+.++.++
T Consensus 172 ~~~a~~ii~~irDie~-----------Dr~~G~~Tlpv~lG~~~ 204 (282)
T PRK13105 172 WGMASHAFGAVQDVVA-----------DREAGIASIATVLGARR 204 (282)
T ss_pred HHHHHHHHHhCcchHh-----------HHHcCCccchHHhcHHH
Confidence 3668999999999865 45789999999987654
No 42
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=57.52 E-value=1.3e+02 Score=26.13 Aligned_cols=51 Identities=8% Similarity=-0.197 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCC---CCchhhhhchHHHHHHHHHHHHHHH
Q 026139 66 AEITEMIHVASLLHDDVLDDADTRRG---IGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 66 A~aiEliH~asLIhDDI~D~s~~RRg---~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
..+.-++|.++-+.+|+.|.+.-|++ +|........+.+...+-.+...++
T Consensus 44 ~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~ 97 (283)
T TIGR01476 44 LMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGL 97 (283)
T ss_pred HHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 34667899999999999998765554 4444444455566665554444443
No 43
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=54.77 E-value=1.5e+02 Score=25.91 Aligned_cols=156 Identities=15% Similarity=0.012 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCC-----CCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 026139 62 QQCIAEITEMIHVASLLHDDVLDDADTRR-----GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE 136 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI~D~s~~RR-----g~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~ 136 (243)
..-...+.=+.-.+.-+.+|+.|-+.-|+ .+|-..-+-..+.|....-.++..++-...-++.....-.+...+.
T Consensus 49 ~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l 128 (289)
T COG0382 49 LLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVL 128 (289)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34455566778889999999977654443 5555555566667766666666555533333322112111222222
Q ss_pred HHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhHHHhhhcccCC
Q 026139 137 HLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (243)
Q Consensus 137 ~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~ 215 (243)
.... -.. +...-..++. -|..+..+.-.|+...+. .....--+.-+..-..++|.+..|+.|..+|
T Consensus 129 ~~~Y-----~~~--Kr~~~~~~~~------lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D 195 (289)
T COG0382 129 ALAY-----PFL--KRFTFLPQLV------LGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGD 195 (289)
T ss_pred HHHH-----HHh--hcCCchHHHH------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccch
Confidence 2222 111 1111222221 145567777777665553 2333445666777788999999999999776
Q ss_pred ccccCCCchhHhhcccchHHHHHHhh
Q 026139 216 SASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 216 ~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
+ +.|..|.|+.++.+
T Consensus 196 ~-----------~~G~~s~~~~~G~~ 210 (289)
T COG0382 196 R-----------KAGLKSLPVLFGIK 210 (289)
T ss_pred H-----------hcCCcchHHHhCch
Confidence 4 56677777776544
No 44
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=54.01 E-value=2.1e+02 Score=27.54 Aligned_cols=90 Identities=12% Similarity=0.048 Sum_probs=59.2
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHHH---HHHHH
Q 026139 124 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAF---DYGKN 198 (243)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~---~~g~~ 198 (243)
.......+.+.+..++.+-..+..|... ..|+.++|+++...-+|...-+.... ..++. .+++..+.+. ++-..
T Consensus 354 ~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~-~~~g~~l~~e~~e~~~~~~~l~~~ 432 (542)
T cd00684 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSF-LGMGDILTEEAFEWLESRPKLVRA 432 (542)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHH-HhcCCCCCHHHHHHHhccHHHHHH
Confidence 4456777888888999998888887653 36899999998655444443221111 11221 3555444333 57777
Q ss_pred HHHHHhHHHhhhcccC
Q 026139 199 LGLAYQLIDDVLDFTG 214 (243)
Q Consensus 199 lG~afQi~DD~~D~~~ 214 (243)
.+....+.||+..+..
T Consensus 433 ~~~i~rL~NDi~S~~k 448 (542)
T cd00684 433 SSTIGRLMNDIATYED 448 (542)
T ss_pred HHHHHHHhcChhhhHH
Confidence 8888999999998854
No 45
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=48.28 E-value=1.3e+02 Score=26.93 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 179 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.+.|.+.+....+...-+.+=.+..|.||+.|- ++.+.|+|
T Consensus 56 ~~~~g~~~~~~~~~A~avEllH~asLiHDDI~D~--s~~RRG~p 97 (323)
T PRK10888 56 ARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDE--SDMRRGKA 97 (323)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHHHcccccC--CcccCCCC
Confidence 3444545454455666667788899999999773 33445555
No 46
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=42.41 E-value=2.3e+02 Score=24.62 Aligned_cols=82 Identities=16% Similarity=0.043 Sum_probs=47.0
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCC--CHHHHH-HHHHHHH-HHHHHHhHHHhhhcccC--Ccc-ccCCCchhHh
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQ--TAEVAI-LAFDYGK-NLGLAYQLIDDVLDFTG--TSA-SLGKGSLSDI 227 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~--~~~~~~-~l~~~g~-~lG~afQi~DD~~D~~~--~~~-~~gk~~~~Dl 227 (243)
+...|++..|-+|-..-..|+.+|..++.. ..+... .+.-++- -+-.+-.+.|||.|+.. |.. ..++ .+=+
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~--~r~l 79 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP--LRAI 79 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC--cccc
Confidence 456789999999988888888888777621 111111 1111121 12234468999999953 322 2222 2346
Q ss_pred hcccchHHHHH
Q 026139 228 RHVIYLSLLFI 238 (243)
Q Consensus 228 ~~gk~T~p~~~ 238 (243)
.+|+.|..-+.
T Consensus 80 ~~G~is~~~~~ 90 (293)
T PRK06080 80 GRGGISPKQVK 90 (293)
T ss_pred cCCCCCHHHHH
Confidence 67777666543
No 47
>PRK13595 ubiA prenyltransferase; Provisional
Probab=38.90 E-value=70 Score=28.38 Aligned_cols=58 Identities=10% Similarity=-0.085 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 171 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 171 ~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
+..|...++...+......- + -...-..+.|++.-|+.|..+ |-+.|..|.|+.++-+
T Consensus 155 ~g~p~~~~~~~~g~~~~~~~-l-~a~~~w~~g~dii~ai~Dieg-----------Dr~~Gi~Slpv~lG~r 212 (292)
T PRK13595 155 YALPLALPALALGAPVPWPP-L-LALMAWSVGKHAFDAAQDIPA-----------DRAAGTRTVATTLGVR 212 (292)
T ss_pred HHHHHHHHHHHcCCcchHHH-H-HHHHHHHHHHHHHHhccChHh-----------HHHcCCeechHHhCcH
Confidence 56677777777765432211 1 233455689999999999754 5678999999988755
No 48
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=38.25 E-value=91 Score=27.84 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=37.5
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHh----HHHhhhcccCC
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG-LAYQ----LIDDVLDFTGT 215 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG-~afQ----i~DD~~D~~~~ 215 (243)
+...|++.+|-||-..-..|+-+|..++-......+-..-+..-+| +++| +.|||.|+..+
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g 67 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKA 67 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4567899999999888788888887776311000111122223333 3355 58999999654
No 49
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=38.19 E-value=2.8e+02 Score=24.33 Aligned_cols=57 Identities=16% Similarity=-0.025 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC----CC-CCCCchhhhhchHHHHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVAL 119 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l 119 (243)
.-...+.=++|.+..+..|+.|.+. .| |.+|-+.-+-..+.|++.+-.+...++-..
T Consensus 49 ~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~ 110 (290)
T PRK12870 49 GIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLA 110 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3344556689999999999977532 33 367777667777888888877766665433
No 50
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=38.10 E-value=95 Score=27.33 Aligned_cols=58 Identities=24% Similarity=0.195 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-CCCCCCCchhhhhchHHHHHHHHHHHHHHHHHH
Q 026139 62 QQCIAEITEMIHVASLLHDDVLDDA-DTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL 119 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI~D~s-~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l 119 (243)
..-++.++=+.-.+.++..++.|-+ +.+.|+.|.-.++|.+.|....-.++..++-.+
T Consensus 162 ~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~ 220 (282)
T PRK13105 162 LWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLM 220 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHH
Confidence 3446667777788999999999954 456799999999999999988888777776443
No 51
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=37.77 E-value=89 Score=26.72 Aligned_cols=38 Identities=29% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 183 GQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 183 ~~~~-~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.++ +....+...-+-+=.++-|.||+.| +++.+.|||
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D--~s~~RRG~p 72 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMD--NSDLRRGKP 72 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhcc--CCcccCCCC
Confidence 4344 4455666677788889999999966 333445655
No 52
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=37.72 E-value=2.7e+02 Score=24.15 Aligned_cols=52 Identities=15% Similarity=-0.006 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCC----CC-CCCCchhhhhchHHHHHHHHHHHHHHHH
Q 026139 66 AEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACV 117 (243)
Q Consensus 66 A~aiEliH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~ 117 (243)
..+.=++|.+..+..|+.|.+. .| |.+|-+--+-..+.|...+-.++..+.-
T Consensus 48 ~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~ 104 (282)
T PRK12848 48 VLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFL 104 (282)
T ss_pred HHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 3444589999999999977532 33 4678777777888888888777776654
No 53
>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]
Probab=35.54 E-value=24 Score=31.37 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q 026139 62 QQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI 82 (243)
...++.|+|++|.--|||.|+
T Consensus 127 ~~ql~SAi~fMHsknlVHRdl 147 (378)
T KOG1345|consen 127 FAQLLSAIEFMHSKNLVHRDL 147 (378)
T ss_pred HHHHHHHHHHhhccchhhccc
Confidence 346899999999999999998
No 54
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=35.32 E-value=1.6e+02 Score=25.12 Aligned_cols=45 Identities=24% Similarity=0.129 Sum_probs=31.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 176 ~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
.+.+.+.+.+++....+...-+.+=.++-|.||+.|= ++.+.|||
T Consensus 22 ~~~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~--s~~RRG~p 66 (260)
T PF00348_consen 22 LLAAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN--SDLRRGKP 66 (260)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSEETTEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc--cccCCCCc
Confidence 3344455566666777777888889999999999773 44555665
No 55
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=33.98 E-value=1.4e+02 Score=26.68 Aligned_cols=86 Identities=15% Similarity=-0.042 Sum_probs=0.0
Q ss_pred CCHHHHHHHH---hhhhHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHH-----hHHHhhhcccCCccccCCC
Q 026139 154 CSMDYYMQKT---YYKTASLISNSCKAIALLAGQTAE---VAILAFDYGKNLGLAY-----QLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 154 ~~~~~y~~~~---~~KTa~l~~~~~~~ga~la~~~~~---~~~~l~~~g~~lG~af-----Qi~DD~~D~~~~~~~~gk~ 222 (243)
.+...|.+.+ +-||-.+...|+..|..++..... ..+-..-+-.-+|..+ .+.||+.|..-| ....++
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD-~~~~Rt 106 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLWHLFLFFVGAIAMRGAGCTYNDIVDRDID-AKVART 106 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCC
Q ss_pred chhHhhcccchHHHHHHh
Q 026139 223 SLSDIRHVIYLSLLFIAS 240 (243)
Q Consensus 223 ~~~Dl~~gk~T~p~~~al 240 (243)
...=+..|+.|..-...+
T Consensus 107 ~~RPl~sG~is~~~a~~~ 124 (314)
T PRK12878 107 RSRPLPSGQVSRKQAKVF 124 (314)
T ss_pred CCCCCCCCCcCHHHHHHH
No 56
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=32.22 E-value=1.6e+02 Score=24.30 Aligned_cols=47 Identities=23% Similarity=0.117 Sum_probs=31.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 174 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
.+.+.+.+.|.+.+....+...-+.+=.+.-+.||+.|= ++.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~a~ave~l~~~~li~DDI~D~--~~~rrg~~ 51 (236)
T cd00867 5 LVLLLARALGGDLEAALRLAAAVELLHAASLVHDDIVDD--SDLRRGKP 51 (236)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcccccC--CccCCCCc
Confidence 344444445656666666777777888889999999883 34445655
No 57
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=30.69 E-value=3.5e+02 Score=23.32 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCC-CHHHHH-HHHHHHHHH-HHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAI-LAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~-~l~~~g~~l-G~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
...|++.++-|+......++..|..++.. .++... .+.-+|--+ -.+=.+.||+.|..-|... |+ ..=+-.|+.
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~--~~-~Rpl~sG~i 79 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKIN--KP-ERPIPSGRI 79 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC-CCCcCCCcc
Confidence 46799999999988877888888888742 222111 111122211 1222689999999766532 11 223455665
Q ss_pred hHH
Q 026139 233 LSL 235 (243)
Q Consensus 233 T~p 235 (243)
|..
T Consensus 80 s~~ 82 (279)
T PRK09573 80 SLK 82 (279)
T ss_pred CHH
Confidence 543
No 58
>PRK13595 ubiA prenyltransferase; Provisional
Probab=30.04 E-value=3.9e+02 Score=23.67 Aligned_cols=77 Identities=13% Similarity=-0.036 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTAE----VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~----~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
.+.+++..+-.+=.....++.+|...+|...+ ..-..--+.--+-.+-|..||+.|+.-|..+.-| ..+..|+
T Consensus 12 l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~---~~i~~G~ 88 (292)
T PRK13595 12 LRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK---GGWQGAR 88 (292)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC---CCCCcCc
Confidence 34566666666655567788888888874222 1212222333444467999999999877533322 2355666
Q ss_pred chHH
Q 026139 232 YLSL 235 (243)
Q Consensus 232 ~T~p 235 (243)
.+-.
T Consensus 89 is~~ 92 (292)
T PRK13595 89 LSPG 92 (292)
T ss_pred cCHH
Confidence 6544
No 59
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=29.40 E-value=93 Score=27.65 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccCC-CCCCCCCCchhhhhchHHHHHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDD-ADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~-s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
.-++...-+...+.++.+|+.|- ++.|.|++|.-..+|.+.+....-+++..++
T Consensus 192 ~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~ 246 (314)
T PRK07566 192 VILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQ 246 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHH
Confidence 33444455566666888888874 4567799999999999988776655555443
No 60
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=29.08 E-value=1.1e+02 Score=27.22 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=26.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCc
Q 026139 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 223 (243)
Q Consensus 180 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~ 223 (243)
.+.+.+.+....+...-+.+=.+.-|.||+.|- ++.+.|+|.
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~--s~~RRg~pt 97 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD--ADLRRGRPT 97 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCCCCcC
Confidence 344555554455566667788888999999774 334445553
No 61
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=28.96 E-value=3.7e+02 Score=23.05 Aligned_cols=77 Identities=10% Similarity=-0.061 Sum_probs=45.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHH-HHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~-~~~~~l~~~g~~l-G~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
...|.+.++-++......++.+|+.++.... ...-.+.-++..+ -.+-.+.||+.|+.-|... |+ ..=+..|+.|
T Consensus 4 l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~--r~-~Rpl~~G~is 80 (279)
T PRK12884 4 MKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN--RP-DRPIPSGRIS 80 (279)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc--CC-CCCCCCCCCC
Confidence 4578999999987777777888888775321 1111111122221 1223679999999877544 32 2335566665
Q ss_pred HH
Q 026139 234 SL 235 (243)
Q Consensus 234 ~p 235 (243)
..
T Consensus 81 ~~ 82 (279)
T PRK12884 81 RR 82 (279)
T ss_pred HH
Confidence 44
No 62
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=28.27 E-value=1.4e+02 Score=25.98 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhccC-CCCCCCCCCchhhhhchHHHHHHHHHHHH
Q 026139 65 IAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLS 113 (243)
Q Consensus 65 lA~aiEliH~asLIhDDI~D-~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~ 113 (243)
++..+-+.-.+.+..+|+.| +++.+.|++|.=..+|.+.+...--.++.
T Consensus 166 ~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~ 215 (283)
T TIGR01476 166 VALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHH
Confidence 34455556667789999999 56667899999999999987765444433
No 63
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=27.75 E-value=4.2e+02 Score=23.20 Aligned_cols=92 Identities=14% Similarity=-0.012 Sum_probs=0.0
Q ss_pred ccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCch
Q 026139 148 TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ---TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSL 224 (243)
Q Consensus 148 ~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~---~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~ 224 (243)
...........|++.++-+...+...++.+|..++.. +....-.+---+.-+-.+=.+.||+.|..-|... -++..
T Consensus 2 ~~~~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~-~Rt~~ 80 (296)
T PRK04375 2 SSSSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLLLLLTLLGIALVAGAAGALNNYIDRDIDAKM-ERTKN 80 (296)
T ss_pred CccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHhhccCCCC-CccCC
Q ss_pred hHhhcccchHHHHHHh
Q 026139 225 SDIRHVIYLSLLFIAS 240 (243)
Q Consensus 225 ~Dl~~gk~T~p~~~al 240 (243)
.=|-.|+.|..-...+
T Consensus 81 Rpl~sG~is~~~a~~~ 96 (296)
T PRK04375 81 RPLVTGRISPREALIF 96 (296)
T ss_pred CCCCCCCcCHHHHHHH
No 64
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=27.61 E-value=3.8e+02 Score=23.02 Aligned_cols=79 Identities=14% Similarity=-0.094 Sum_probs=47.4
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCH-HH-HHHHHHHHHH-HHHHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTA-EV-AILAFDYGKN-LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~-~~-~~~l~~~g~~-lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
+...|++.++-++..+...++..|..++.... .. .-.+.-+|-- +-.+-.+.||+.|..-|+. .| ...=+..|+
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~~~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~--~~-~~Rpl~~G~ 79 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSSPSLTGLAFAAVFLATGAGNAINDYFDREIDRI--NR-PDRPIPSGA 79 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc--cC-CCCCcCCCC
Confidence 35679999999998888888888888875321 11 1112112211 1223457999999987753 22 234456666
Q ss_pred chHHH
Q 026139 232 YLSLL 236 (243)
Q Consensus 232 ~T~p~ 236 (243)
.|...
T Consensus 80 is~~~ 84 (276)
T PRK12882 80 VSPRG 84 (276)
T ss_pred cCHHH
Confidence 65443
No 65
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=25.86 E-value=1.4e+02 Score=26.15 Aligned_cols=43 Identities=14% Similarity=0.077 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccCC-CCCCCCCCchhhhhchHHHHHHHHHHH
Q 026139 70 EMIHVASLLHDDVLDD-ADTRRGIGSLNFVMGNKLAVLAGDFLL 112 (243)
Q Consensus 70 EliH~asLIhDDI~D~-s~~RRg~pt~~~~~G~~~Ail~Gd~ll 112 (243)
=+...+.++..++.|- ++.|.|++|.=.++|.+.+....-.++
T Consensus 175 ~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~ 218 (282)
T PRK12875 175 WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACW 218 (282)
T ss_pred HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHH
Confidence 3666777888999884 567789999999999998875444433
No 66
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=25.21 E-value=2.2e+02 Score=24.96 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHH-H-HHHHHHHHHHHHHHhH----HHhhhcccCCc
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEV-A-ILAFDYGKNLGLAYQL----IDDVLDFTGTS 216 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~-~-~~l~~~g~~lG~afQi----~DD~~D~~~~~ 216 (243)
.+.|++..|-||=.+...|+..|..++..+... . -.+--+--.+.+...+ .||+.|...|+
T Consensus 8 ~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr 74 (282)
T PRK12875 8 LRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAAVALFAYFLFPANVFLYGVNDVFDADTDE 74 (282)
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHhcchhhhhhhccc
Confidence 456889999999888888999998887643211 0 0111111122244555 69999996554
No 67
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=24.83 E-value=4.9e+02 Score=23.04 Aligned_cols=54 Identities=13% Similarity=-0.047 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHhhccCCCC----CC-CCCCchhhhhchHHHHHHHHHHHHHHHHHH
Q 026139 66 AEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVAL 119 (243)
Q Consensus 66 A~aiEliH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l 119 (243)
..+.=++|.+.-+..|+.|.+. .| |.||-.--+-..+.|+..+-.+...++..+
T Consensus 53 ~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll 111 (306)
T PRK13362 53 VIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLL 111 (306)
T ss_pred HHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3467789999999999977542 33 578888778888899988887777766544
No 68
>KOG3330 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.81 E-value=2.2e+02 Score=22.95 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhc
Q 026139 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229 (243)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~ 229 (243)
+++..+++.+.|.++|+ .+.||++.= ++-|.|.|+++
T Consensus 39 ~e~Vn~qLdkMGyNiG~--RLiedFLAk------s~vpRC~dfre 75 (183)
T KOG3330|consen 39 PEDVNKQLDKMGYNIGI--RLIEDFLAK------SNVPRCVDFRE 75 (183)
T ss_pred HHHHHHHHHhccchhhH--HHHHHHHhh------cCCchhhhHHH
Confidence 45567899999999997 688998864 34467889886
No 69
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=24.58 E-value=4.5e+02 Score=22.57 Aligned_cols=78 Identities=12% Similarity=0.036 Sum_probs=44.4
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCC-HHHH-HHHHHHHHHHH-HHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVA-ILAFDYGKNLG-LAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~-~~~~-~~l~~~g~~lG-~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
+...|.+..+-++..+-..+...|..++... +... -.+.-.+-.++ .+=.+.||+.|+.-|.. .|+ ..=+..|+
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~--n~~-~Rpl~sG~ 78 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKI--NRP-NRPLPRGA 78 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhcccc--CCC-CCCCCCCc
Confidence 4567999999998887666667777776321 2111 11111222222 34578999999987652 222 23344555
Q ss_pred chHH
Q 026139 232 YLSL 235 (243)
Q Consensus 232 ~T~p 235 (243)
.|..
T Consensus 79 is~~ 82 (277)
T PRK12883 79 MSRK 82 (277)
T ss_pred cCHH
Confidence 5533
No 70
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=24.25 E-value=1.9e+02 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHhhccC-CCCCCCCCCchhhhhchHHHHHHHHHHHHHH
Q 026139 64 CIAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLSRA 115 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D-~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a 115 (243)
-++..+=+.-.+.++.+|+.| +++.|.|++|.-.++|.+.+...-..++..+
T Consensus 187 l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~ 239 (306)
T TIGR02056 187 VLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIF 239 (306)
T ss_pred HHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHH
Confidence 344444456677788899988 4556789999999999998887766554443
No 71
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=24.08 E-value=2.4e+02 Score=24.39 Aligned_cols=80 Identities=16% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH-----hHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 159 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAY-----QLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 159 y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~af-----Qi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
|++.++-|+..+...++.+|..++.... ..+-..-+..-+|... .+.||+.|..-| ...-+...+=+-.|+.|
T Consensus 3 ~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD-~~~~Rt~~Rpl~sG~is 80 (280)
T TIGR01473 3 YLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPPLLLLTLLGTTLAAASANAFNMYIDRDID-KKMKRTRNRPLVTGRIS 80 (280)
T ss_pred hHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHhhcccCcC-CCCCCCCCCCCCCCCcC
Q ss_pred HHHHHHh
Q 026139 234 SLLFIAS 240 (243)
Q Consensus 234 ~p~~~al 240 (243)
..-...+
T Consensus 81 ~~~a~~~ 87 (280)
T TIGR01473 81 PREALAF 87 (280)
T ss_pred HHHHHHH
No 72
>PLN00012 chlorophyll synthetase; Provisional
Probab=23.96 E-value=3.1e+02 Score=25.23 Aligned_cols=79 Identities=14% Similarity=-0.187 Sum_probs=45.4
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHH-HH-HHHHHH-----HHHHhHHHhhhcccCCccccCCCchhHh
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL-AF-DYGKNL-----GLAYQLIDDVLDFTGTSASLGKGSLSDI 227 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~-l~-~~g~~l-----G~afQi~DD~~D~~~~~~~~gk~~~~Dl 227 (243)
....|++..+-||-.+...++.+|...++.-.-.... +. -+..-+ -.+=++.|||.|..-|... |+ ..=+
T Consensus 84 ~~k~~l~L~RP~t~~~~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~--~~-~Rpi 160 (375)
T PLN00012 84 IWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAIN--EP-YRPI 160 (375)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccC--CC-CCCc
Confidence 3467999999999888777888887766532111110 00 011222 2234679999998766322 22 3445
Q ss_pred hcccchHHH
Q 026139 228 RHVIYLSLL 236 (243)
Q Consensus 228 ~~gk~T~p~ 236 (243)
..|+.|-..
T Consensus 161 ~sG~Is~~~ 169 (375)
T PLN00012 161 PSGAISENE 169 (375)
T ss_pred CCCccCHHH
Confidence 667665443
No 73
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=23.67 E-value=4.8e+02 Score=22.56 Aligned_cols=77 Identities=10% Similarity=-0.054 Sum_probs=45.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCC-HHHHHH--HHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 157 DYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAIL--AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 157 ~~y~~~~~~KTa~l~~~~~~~ga~la~~~-~~~~~~--l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
..|++..+-++..+...++..|..++... .+.... ..--+.-+-.+=++.||+.|..-|... -++...=+-.|+.|
T Consensus 3 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~-~Rt~~RPl~sG~is 81 (279)
T PRK12869 3 KAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVM-SRTSKRPTPVGLVN 81 (279)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCC-CCCCCCCcCCCCcC
Confidence 46899999998888889999998887422 221111 111111223334899999997666531 11112335566665
Q ss_pred H
Q 026139 234 S 234 (243)
Q Consensus 234 ~ 234 (243)
-
T Consensus 82 ~ 82 (279)
T PRK12869 82 R 82 (279)
T ss_pred H
Confidence 3
No 74
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=23.40 E-value=3.4e+02 Score=23.51 Aligned_cols=55 Identities=25% Similarity=0.184 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC-CCCCCCCCchhhhhchHHHHHHHHHHHHHHH
Q 026139 62 QQCIAEITEMIHVASLLHDDVLDD-ADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI~D~-s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~ 116 (243)
..-++...-++-...++..|+.|- ++.+.|+.|.-.++|.+.+...--.++..++
T Consensus 170 ~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~ 225 (293)
T PRK06080 170 VFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAY 225 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHH
Confidence 445666677777888888999885 4566899999999999887766655555554
No 75
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=23.24 E-value=45 Score=34.56 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCchhh
Q 026139 62 QQCIAEITEMIHVASLLHDDV-LDDADTRRGIGSLNF 97 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI-~D~s~~RRg~pt~~~ 97 (243)
...+.-+||.||..-.||-|| -|+--.||+.+.-+-
T Consensus 800 ~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~ 836 (974)
T KOG1166|consen 800 SCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSD 836 (974)
T ss_pred HHHHHHHHHHHHhcceecccCCcceeEeecccCCCCc
Confidence 456788999999999999999 899889887664433
No 76
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=23.15 E-value=4.8e+02 Score=23.43 Aligned_cols=82 Identities=15% Similarity=0.047 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCC----CHHH---HHHHHHHHHHHHHHH-hHHHhhhcccCCccccCCCchhH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQ----TAEV---AILAFDYGKNLGLAY-QLIDDVLDFTGTSASLGKGSLSD 226 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~----~~~~---~~~l~~~g~~lG~af-Qi~DD~~D~~~~~~~~gk~~~~D 226 (243)
+...|++.++-+|-. ...|+..|..++.. +... .-.+.-++-.++..+ ++.||+.|+.-|. ..|+. .=
T Consensus 11 ~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~--~n~rt-Rp 86 (331)
T PRK12392 11 KIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDR--VNEPT-RP 86 (331)
T ss_pred HHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccc--cCCCC-CC
Q ss_pred hhcccchHHHHHHh
Q 026139 227 IRHVIYLSLLFIAS 240 (243)
Q Consensus 227 l~~gk~T~p~~~al 240 (243)
+..|+.|-.-.+.+
T Consensus 87 l~~G~is~~~al~~ 100 (331)
T PRK12392 87 IPSGRLSEKEALWN 100 (331)
T ss_pred CCcCCcCHHHHHHH
No 77
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=22.50 E-value=5.1e+02 Score=22.36 Aligned_cols=50 Identities=14% Similarity=0.023 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCC----C-CCCCCchhhhhchHHHHHHHHHHH
Q 026139 63 QCIAEITEMIHVASLLHDDVLDDAD----T-RRGIGSLNFVMGNKLAVLAGDFLL 112 (243)
Q Consensus 63 ~~lA~aiEliH~asLIhDDI~D~s~----~-RRg~pt~~~~~G~~~Ail~Gd~ll 112 (243)
.-...+.=+++.+..+.+|+.|.+. . .+.+|-...+...+.|...+-.+.
T Consensus 39 ~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 93 (282)
T TIGR01475 39 ILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSL 93 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 3345566689999999999977533 1 245676666666777777665443
No 78
>PF05392 COX7B: Cytochrome C oxidase chain VIIB; InterPro: IPR008433 Cytochrome oxidase subunit VIIB is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport. The X-ray structure of azide-bound fully oxidized cytochrome c oxidase from bovine heart at 2.9 A resolution has been determined [].; GO: 0004129 cytochrome-c oxidase activity, 0005746 mitochondrial respiratory chain; PDB: 3AG2_X 3ASO_K 3ABL_X 1V55_K 1OCR_K 2DYS_X 1OCO_X 2EIK_X 3AG1_K 2Y69_X ....
Probab=21.77 E-value=97 Score=21.79 Aligned_cols=23 Identities=30% Similarity=0.212 Sum_probs=14.0
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHH
Q 026139 91 GIGSLNFVMGNKLAVLAGDFLLSRA 115 (243)
Q Consensus 91 g~pt~~~~~G~~~Ail~Gd~ll~~a 115 (243)
..|..|.+||+ +||+|-..+..+
T Consensus 29 ~~pdFHdKYGn--~vL~~Ga~FC~~ 51 (80)
T PF05392_consen 29 HSPDFHDKYGN--AVLASGATFCVA 51 (80)
T ss_dssp ----HHHHHHH--HHHHHHHHHHHH
T ss_pred CCCchhhhcCc--eeeecccchhhh
Confidence 35789999988 677776655544
No 79
>PLN02878 homogentisate phytyltransferase
Probab=21.35 E-value=52 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 195 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 195 ~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
|..-.....-+..|+.|+.||+ +.|..|+|+.++-++
T Consensus 164 f~~~f~~~i~i~KDi~DieGD~-----------~~Gi~Tlpv~lG~~~ 200 (280)
T PLN02878 164 FMCFFSVVIALFKDIPDVEGDR-----------IFGIRSFSVRLGQKR 200 (280)
T ss_pred HHHHHHHHHHHHhhCcCchhHH-----------HCCCceechhhChHH
No 80
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=21.30 E-value=4.5e+02 Score=22.75 Aligned_cols=57 Identities=11% Similarity=-0.053 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCC----CC-CCCCchhhhhchHHHHHHHHHHHHHHHHH
Q 026139 62 QQCIAEITEMIHVASLLHDDVLDDAD----TR-RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (243)
Q Consensus 62 ~~~lA~aiEliH~asLIhDDI~D~s~----~R-Rg~pt~~~~~G~~~Ail~Gd~ll~~a~~~ 118 (243)
..-...+.=+++.++.+..|+.|.+- .| +.||-+..+-..+.|...+-.++..++-.
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l 99 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTAL 99 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 34456677888999999999977532 33 56888877788888888887776666544
No 81
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=20.81 E-value=57 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=16.5
Q ss_pred HHHhHHHhhhcccCCccccCCCc
Q 026139 201 LAYQLIDDVLDFTGTSASLGKGS 223 (243)
Q Consensus 201 ~afQi~DD~~D~~~~~~~~gk~~ 223 (243)
-..+|.+|++|++-....-|+++
T Consensus 45 ~~~~il~dildlfEe~aadG~~V 67 (103)
T PF06304_consen 45 DMMEILSDILDLFEEAAADGKSV 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHcCCCh
Confidence 46799999999987666667763
Done!