Query 026139
Match_columns 243
No_of_seqs 168 out of 1176
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 06:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 1.6E-63 5.3E-68 445.6 25.6 222 2-242 46-267 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 5.3E-63 1.8E-67 442.0 27.5 222 2-242 33-255 (341)
3 3nf2_A Putative polyprenyl syn 100.0 3.8E-63 1.3E-67 444.4 22.4 222 2-242 24-259 (352)
4 3rmg_A Octaprenyl-diphosphate 100.0 1.8E-62 6E-67 437.7 24.8 221 2-242 28-248 (334)
5 1wy0_A Geranylgeranyl pyrophos 100.0 9.3E-63 3.2E-67 441.5 22.8 221 3-242 27-253 (342)
6 3aqb_B Component B of hexapren 100.0 1.5E-62 5.1E-67 437.3 23.3 221 3-242 26-246 (325)
7 3apz_A Geranyl diphosphate syn 100.0 5.1E-63 1.8E-67 444.1 19.4 241 2-242 29-269 (348)
8 3pko_A Geranylgeranyl pyrophos 100.0 2.9E-62 1E-66 436.3 23.4 223 2-242 36-259 (334)
9 3lmd_A Geranylgeranyl pyrophos 100.0 5.9E-62 2E-66 437.2 22.2 221 2-242 55-275 (360)
10 3p8l_A Geranyltranstransferase 100.0 2.1E-61 7E-66 424.6 24.6 219 5-242 34-261 (302)
11 3pde_A Farnesyl-diphosphate sy 100.0 1.4E-61 4.9E-66 426.3 22.6 218 5-242 32-260 (309)
12 4dhd_A Polyprenyl synthetase; 100.0 1.9E-61 6.5E-66 434.5 22.6 218 6-242 30-261 (358)
13 1wmw_A Geranylgeranyl diphosph 100.0 1.7E-61 5.8E-66 431.3 22.0 218 3-242 21-246 (330)
14 1rtr_A Geranyltranstransferase 100.0 1.7E-61 5.9E-66 425.7 20.6 218 5-242 26-253 (301)
15 3uca_A Geranyltranstransferase 100.0 2.5E-61 8.7E-66 427.3 21.2 219 5-242 58-286 (324)
16 1v4e_A Octoprenyl-diphosphate 100.0 2.1E-61 7E-66 424.9 20.4 209 11-242 30-238 (299)
17 2e8v_A Geranylgeranyl pyrophos 100.0 1.7E-61 5.8E-66 432.7 20.0 220 3-242 22-249 (340)
18 3ts7_A Geranyltranstransferase 100.0 4E-61 1.4E-65 426.0 21.8 218 5-242 34-264 (324)
19 4f62_A Geranyltranstransferase 100.0 1.4E-60 4.9E-65 421.3 25.1 217 6-242 30-257 (317)
20 2q80_A Geranylgeranyl pyrophos 100.0 1.4E-61 4.9E-66 426.4 17.9 218 2-242 6-224 (301)
21 2h8o_A Geranyltranstransferase 100.0 6.4E-61 2.2E-65 426.9 22.1 218 5-242 69-297 (335)
22 3lsn_A Geranyltranstransferase 100.0 4.3E-61 1.5E-65 423.1 20.4 217 6-242 29-258 (304)
23 1rqj_A Geranyltranstransferase 100.0 5.2E-61 1.8E-65 422.6 20.4 217 6-242 29-258 (299)
24 3p8r_A Geranyltranstransferase 100.0 6.9E-61 2.3E-65 421.7 19.0 218 5-242 34-264 (302)
25 3lom_A Geranyltranstransferase 100.0 2.7E-60 9.4E-65 419.4 21.3 218 5-242 34-265 (313)
26 2ftz_A Geranyltranstransferase 100.0 5.1E-60 1.7E-64 412.7 21.3 214 5-242 30-246 (284)
27 3m0g_A Farnesyl diphosphate sy 100.0 2.6E-60 9E-65 416.9 19.2 214 6-242 27-251 (297)
28 3lk5_A Geranylgeranyl pyrophos 100.0 9.5E-60 3.3E-64 426.0 22.6 222 8-242 49-292 (380)
29 3npk_A Geranyltranstransferase 100.0 8.8E-60 3E-64 412.3 21.3 218 4-242 22-248 (291)
30 3llw_A Geranyltranstransferase 100.0 1.9E-59 6.5E-64 413.7 20.1 223 4-242 31-263 (311)
31 3tc1_A Octaprenyl pyrophosphat 100.0 3.4E-59 1.2E-63 413.1 21.6 208 14-242 28-235 (315)
32 2qis_A Farnesyl pyrophosphate 100.0 2E-58 6.7E-63 417.3 21.3 223 6-242 63-298 (374)
33 1uby_A FPS, farnesyl diphospha 100.0 3.2E-58 1.1E-62 414.9 21.3 222 7-242 57-291 (367)
34 3mav_A Farnesyl pyrophosphate 100.0 4.1E-58 1.4E-62 418.4 21.2 220 8-242 67-320 (395)
35 1yhl_A Farnesyl pyrophosphate 100.0 3.3E-58 1.1E-62 414.8 19.4 226 7-242 34-284 (362)
36 3ipi_A Geranyltranstransferase 100.0 2.2E-58 7.6E-63 404.3 17.4 209 6-241 27-235 (295)
37 2ihi_A Pyrophosphate synthase; 100.0 4.4E-57 1.5E-61 410.2 21.6 221 7-242 66-320 (395)
38 2q58_A Fragment, farnesyl pyro 100.0 6.6E-58 2.3E-62 413.2 14.8 214 8-242 59-284 (368)
39 2her_A Fragment, farnesyl pyro 100.0 1.6E-57 5.6E-62 408.8 13.8 215 7-242 58-284 (368)
40 3dyh_A Farnesyl pyrophosphate 100.0 2.1E-56 7.1E-61 405.6 17.3 228 7-242 56-312 (390)
41 2azj_A Geranylgeranyl pyrophos 100.0 9.6E-56 3.3E-60 386.8 19.0 197 6-238 35-232 (289)
42 4fp4_A Polyprenyl synthetase; 100.0 1.6E-54 5.6E-59 376.7 16.8 201 2-230 25-226 (285)
43 2j1p_A Geranylgeranyl pyrophos 100.0 6.2E-54 2.1E-58 376.4 20.3 204 6-242 37-254 (293)
44 3kra_B Geranyl diphosphate syn 100.0 2.1E-49 7.2E-54 344.4 21.5 186 4-209 22-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 5.1E-49 1.7E-53 342.0 19.4 185 4-211 27-224 (273)
46 4hd1_A Squalene synthase HPNC; 96.2 0.24 8.1E-06 42.5 15.7 70 135-213 106-175 (294)
47 3vj8_A Squalene synthase; farn 95.6 0.32 1.1E-05 42.8 14.1 82 127-212 112-193 (343)
48 3kb9_A EPI-isozizaene synthase 93.9 0.78 2.7E-05 40.6 12.4 89 124-214 175-268 (382)
49 1ps1_A Pentalenene synthase; a 91.8 3.9 0.00013 35.0 13.6 95 119-214 127-226 (337)
50 3acx_A Dehydrosqualene synthas 90.9 1.2 4.3E-05 37.8 9.3 84 134-236 109-192 (293)
51 3aqb_A Component A of hexapren 87.8 0.7 2.4E-05 35.1 4.6 62 71-146 53-114 (147)
52 4f62_A Geranyltranstransferase 70.2 28 0.00097 29.9 9.6 60 64-123 206-277 (317)
53 3uca_A Geranyltranstransferase 69.9 33 0.0011 29.5 10.0 60 64-123 235-306 (324)
54 3v1v_A 2-MIB synthase, 2-methy 68.0 13 0.00045 33.4 7.3 96 118-215 247-346 (433)
55 3lsn_A Geranyltranstransferase 68.0 16 0.00056 31.2 7.5 78 64-141 207-298 (304)
56 3ts7_A Geranyltranstransferase 64.1 40 0.0014 29.0 9.3 61 64-124 213-285 (324)
57 3p8r_A Geranyltranstransferase 62.6 30 0.001 29.4 8.2 60 64-123 213-284 (302)
58 1di1_A Aristolochene synthase; 62.4 65 0.0022 26.5 10.5 64 152-215 150-213 (300)
59 3g4d_A (+)-delta-cadinene synt 61.2 74 0.0025 29.5 11.0 90 125-215 365-459 (554)
60 3p8l_A Geranyltranstransferase 60.1 46 0.0016 28.3 8.9 59 64-122 210-280 (302)
61 3lom_A Geranyltranstransferase 59.2 28 0.00096 29.8 7.4 71 64-134 214-297 (313)
62 3m00_A Aristolochene synthase; 55.8 1.3E+02 0.0044 27.9 12.0 87 125-214 361-453 (550)
63 3n0f_A Isoprene synthase; terp 55.7 82 0.0028 29.2 10.4 87 127-214 365-456 (555)
64 3bny_A Aristolochene synthase; 55.0 91 0.0031 26.0 10.0 63 152-214 164-226 (320)
65 1rtr_A Geranyltranstransferase 54.9 38 0.0013 28.7 7.5 60 64-123 202-273 (301)
66 1yyq_A Trichodiene synthase; t 54.4 86 0.003 27.4 9.9 132 71-215 91-233 (374)
67 3m0g_A Farnesyl diphosphate sy 53.6 37 0.0013 28.8 7.2 69 65-133 201-282 (297)
68 2h8o_A Geranyltranstransferase 52.8 45 0.0015 28.8 7.7 60 64-123 246-317 (335)
69 3rmg_A Octaprenyl-diphosphate 50.3 28 0.00097 30.0 6.0 31 182-212 62-92 (334)
70 2ong_A 4S-limonene synthase; m 47.0 1.7E+02 0.006 26.8 11.6 87 127-214 356-447 (543)
71 3pde_A Farnesyl-diphosphate sy 42.2 1E+02 0.0034 26.3 8.1 58 64-121 209-278 (309)
72 3ipi_A Geranyltranstransferase 41.3 1.6E+02 0.0055 24.7 9.7 61 64-124 191-265 (295)
73 1v54_K IHQ, cytochrome C oxida 38.6 29 0.00099 21.7 3.0 24 90-115 4-27 (56)
74 3mzv_A Decaprenyl diphosphate 36.0 32 0.0011 29.8 4.1 44 177-222 63-106 (341)
75 2q80_A Geranylgeranyl pyrophos 35.6 50 0.0017 28.0 5.1 41 180-222 38-78 (301)
76 4fp4_A Polyprenyl synthetase; 35.5 41 0.0014 28.4 4.5 36 185-222 66-101 (285)
77 2azj_A Geranylgeranyl pyrophos 30.7 52 0.0018 27.7 4.4 42 179-222 61-102 (289)
78 1wmw_A Geranylgeranyl diphosph 29.9 62 0.0021 27.7 4.8 44 177-222 49-92 (330)
79 2e8v_A Geranylgeranyl pyrophos 29.3 62 0.0021 27.9 4.7 41 180-222 53-93 (340)
80 3llw_A Geranyltranstransferase 28.7 2.7E+02 0.0091 23.6 10.1 58 64-121 214-281 (311)
81 3p5p_A Taxadiene synthase; cla 28.2 1.8E+02 0.006 28.1 8.1 86 127-214 567-658 (764)
82 3lmd_A Geranylgeranyl pyrophos 28.1 58 0.002 28.4 4.3 35 177-211 84-119 (360)
83 1v4e_A Octoprenyl-diphosphate 28.1 59 0.002 27.5 4.3 34 187-222 61-94 (299)
84 3nf2_A Putative polyprenyl syn 27.8 44 0.0015 29.0 3.5 45 176-222 63-107 (352)
85 3pko_A Geranylgeranyl pyrophos 27.6 60 0.002 27.9 4.3 40 181-222 69-109 (334)
86 3sdr_A Alpha-bisabolene syntha 26.8 1.1E+02 0.0039 29.7 6.5 87 127-215 626-721 (817)
87 1n1b_A (+)-bornyl diphosphate 26.6 1.2E+02 0.0042 27.9 6.5 88 127-215 362-455 (549)
88 4dhd_A Polyprenyl synthetase; 26.5 37 0.0013 29.6 2.8 36 185-222 63-98 (358)
89 2ftz_A Geranyltranstransferase 25.0 93 0.0032 26.1 5.0 40 181-222 60-101 (284)
90 2y69_K Cytochrome C oxidase po 24.3 64 0.0022 21.7 3.0 23 91-115 29-51 (80)
91 2j5c_A 1,8-cineole synthase; t 24.1 2E+02 0.0068 26.7 7.4 88 127-215 383-475 (569)
92 3aqb_B Component B of hexapren 23.3 50 0.0017 28.2 3.0 43 178-222 55-97 (325)
93 1rqj_A Geranyltranstransferase 23.0 1.1E+02 0.0036 25.8 5.0 44 177-222 54-99 (299)
94 1wy0_A Geranylgeranyl pyrophos 22.5 42 0.0014 28.9 2.4 40 181-222 60-99 (342)
95 2j1p_A Geranylgeranyl pyrophos 21.4 1.2E+02 0.0041 25.4 5.0 41 180-222 65-107 (293)
96 3lk5_A Geranylgeranyl pyrophos 21.4 1.2E+02 0.004 26.6 5.1 26 186-211 87-112 (380)
97 3s9v_A Abietadiene synthase, c 20.3 1.8E+02 0.0063 28.1 6.5 86 127-214 598-689 (785)
98 4err_A Autotransporter adhesin 20.2 1E+02 0.0035 21.3 3.4 29 187-215 9-38 (90)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=1.6e-63 Score=445.62 Aligned_cols=222 Identities=33% Similarity=0.472 Sum_probs=184.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+++.+|.+.++++|++..| |||+||.|++++++++|++.+ +++.+|+++|+||++||||||
T Consensus 46 l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHDD 106 (345)
T 3oyr_A 46 MQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND-----------------HFQKLAAAVEFIHTATLLHDD 106 (345)
T ss_dssp TCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS-----------------THHHHHHHHHHHHHHHHHTTT
T ss_pred hccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCc
Confidence 5678899999999999988 999999999999999987643 367899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|++|||+||+|.+||++.|||+||||+++|++.+++..+.++++.+++++..++.||++|+.+..+..+++++|++
T Consensus 107 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 186 (345)
T 3oyr_A 107 VVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLE 186 (345)
T ss_dssp TC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHH
T ss_pred ccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999998777899999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||+|||+|||++++++
T Consensus 187 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~ 266 (345)
T 3oyr_A 187 IIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIA 266 (345)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 267 ~ 267 (345)
T 3oyr_A 267 R 267 (345)
T ss_dssp H
T ss_pred h
Confidence 4
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=5.3e-63 Score=441.98 Aligned_cols=222 Identities=32% Similarity=0.540 Sum_probs=196.0
Q ss_pred CCCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 026139 2 VVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (243)
Q Consensus 2 ~~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhD 80 (243)
+++. +|.+.++++|++..| |||+||.+++++++++|++.+ .+..+|+++|+||+||||||
T Consensus 33 ~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHD 93 (341)
T 3mzv_A 33 MSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP-----------------FHVHLAATVEFIHTATLLHD 93 (341)
T ss_dssp SCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHc
Confidence 4566 899999999999988 999999999999999987542 46889999999999999999
Q ss_pred hccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHH
Q 026139 81 DVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 160 (243)
Q Consensus 81 DI~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 160 (243)
||||+|++|||+||+|.+||++.|||+||||+++|++.+++..+.++++.+++++..++.||++|+.+..+..+++++|+
T Consensus 94 DI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~ 173 (341)
T 3mzv_A 94 DVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYL 173 (341)
T ss_dssp HC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHH
T ss_pred CccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999877789999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHh
Q 026139 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240 (243)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al 240 (243)
+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+++++
T Consensus 174 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al 253 (341)
T 3mzv_A 174 RVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 026139 241 EI 242 (243)
Q Consensus 241 ~~ 242 (243)
++
T Consensus 254 ~~ 255 (341)
T 3mzv_A 254 AL 255 (341)
T ss_dssp HT
T ss_pred Hh
Confidence 75
No 3
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=3.8e-63 Score=444.39 Aligned_cols=222 Identities=28% Similarity=0.366 Sum_probs=210.0
Q ss_pred CCCCchhHHHHHHHHH-----------hCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHH
Q 026139 2 VVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 70 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~-----------~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiE 70 (243)
+++.+|.++++..|++ ..| |||+||+|++++++++|++.+ .++.+|+++|
T Consensus 24 v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~~-----------------~~~~~A~avE 84 (352)
T 3nf2_A 24 VDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAPE-----------------VGVPGAVAVE 84 (352)
T ss_dssp HHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCGG-----------------GGHHHHHHHH
T ss_pred HcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCHH-----------------HHHHHHHHHH
Confidence 4577899999999998 567 999999999999999987532 4678999999
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHhHHhhc
Q 026139 71 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVTLLATVVEHLVTGETMQMT 147 (243)
Q Consensus 71 liH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~---~~~~~~~~~~~~~~~Gq~~d~~ 147 (243)
|||++|||||||||+|++|||+||+|.+||++.|||+||||+++|++.+++.+++ ++++.+++++.+++.||++|+.
T Consensus 85 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~ 164 (352)
T 3nf2_A 85 LVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDIS 164 (352)
T ss_dssp HHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776 7899999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHh
Q 026139 148 TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227 (243)
Q Consensus 148 ~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl 227 (243)
+..+..+++++|++|+++|||+||++||++|++++|++++..+.+++||+++|++|||+||++|++++++.+||+.|+||
T Consensus 165 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl 244 (352)
T 3nf2_A 165 YEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDL 244 (352)
T ss_dssp HTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCccc
Confidence 98777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchHHHHHHhhc
Q 026139 228 RHVIYLSLLFIASEI 242 (243)
Q Consensus 228 ~~gk~T~p~~~al~~ 242 (243)
++||+|||+++++++
T Consensus 245 ~egK~Tlpvi~al~~ 259 (352)
T 3nf2_A 245 RQRKKSLPVVAALAA 259 (352)
T ss_dssp HTTCCCHHHHHHHHH
T ss_pred ccCCccHHHHHHHHh
Confidence 999999999999975
No 4
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-62 Score=437.70 Aligned_cols=221 Identities=30% Similarity=0.414 Sum_probs=188.9
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.|.++++|++..| |||+||.+++++++++|++. +.++.+|+++|+||+|||||||
T Consensus 28 ~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLiHDD 88 (334)
T 3rmg_A 28 LSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------PATLHAAVSLELLHTASLVHDD 88 (334)
T ss_dssp --CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4677899999999999888 99999999999999998643 3578899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++.||++|+.+..+..+++++|++
T Consensus 89 I~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~ 168 (334)
T 3rmg_A 89 VVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFD 168 (334)
T ss_dssp HHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHH
T ss_pred ccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999998777789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++ +++.+||+.|+||++||+|||++++++
T Consensus 169 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~ 247 (334)
T 3rmg_A 169 VIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALN 247 (334)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 578999999999999999999999987
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 248 ~ 248 (334)
T 3rmg_A 248 T 248 (334)
T ss_dssp H
T ss_pred h
Confidence 4
No 5
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-63 Score=441.48 Aligned_cols=221 Identities=31% Similarity=0.409 Sum_probs=208.3
Q ss_pred CCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 3 VAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 3 ~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
.+. +|.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||+|||||||
T Consensus 27 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDD 87 (342)
T 1wy0_A 27 PEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP-----------------LRAIYPAVAIELIHNYSLVHDD 87 (342)
T ss_dssp CSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHCC
Confidence 345 789999999999988 99999999999999997642 1357899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSM 156 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~ 156 (243)
|||+|++|||+||+|.+||++.|||+||+|+++|++.+++. .+.++++.+++++..++.||++|+.+..+..+++
T Consensus 88 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~ 167 (342)
T 1wy0_A 88 IMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTI 167 (342)
T ss_dssp HHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCH
T ss_pred cccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence 99999999999999999999999999999999999999987 4568999999999999999999999987777899
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHH
Q 026139 157 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLL 236 (243)
Q Consensus 157 ~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~ 236 (243)
++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+
T Consensus 168 ~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~ 247 (342)
T 1wy0_A 168 EEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIV 247 (342)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q 026139 237 FIASEI 242 (243)
Q Consensus 237 ~~al~~ 242 (243)
++++++
T Consensus 248 i~al~~ 253 (342)
T 1wy0_A 248 AHFFEN 253 (342)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999974
No 6
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.5e-62 Score=437.30 Aligned_cols=221 Identities=31% Similarity=0.449 Sum_probs=210.5
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+.+|.+.++++|++..| |||+||.+++++++++|++. +.++.+|+++|+||+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDi 86 (325)
T 3aqb_B 26 QSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DDLIRTAVSLELVHMASLVHDDY 86 (325)
T ss_dssp CCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHhCcc
Confidence 456789999999999988 99999999999999997642 35688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~ 162 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++..+.++++.+++++.+++.||.+|+.+..+..+++++|++|
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~ 166 (325)
T 3aqb_B 87 IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRR 166 (325)
T ss_dssp HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999887777899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+++++++
T Consensus 167 i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~ 246 (325)
T 3aqb_B 167 INRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIAN 246 (325)
T ss_dssp HHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999874
No 7
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=5.1e-63 Score=444.10 Aligned_cols=241 Identities=78% Similarity=1.116 Sum_probs=184.6
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+...+.+..+....+..++++.+|+++|+||+|||||||
T Consensus 29 ~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDD 108 (348)
T 3apz_A 29 VLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDD 108 (348)
T ss_dssp CCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 46778999999999998544599999999999999998643221000000000123345678999999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|++|||+||+|.+||++.|||+||||+++|+..+++..+.++++.+++++..++.||++|+.+..+..+++++|++
T Consensus 109 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 188 (348)
T 3apz_A 109 VLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQ 188 (348)
T ss_dssp C----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHH
T ss_pred ccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999876555679999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 189 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~ 268 (348)
T 3apz_A 189 KTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAME 268 (348)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 269 ~ 269 (348)
T 3apz_A 269 E 269 (348)
T ss_dssp H
T ss_pred c
Confidence 3
No 8
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=2.9e-62 Score=436.29 Aligned_cols=223 Identities=29% Similarity=0.451 Sum_probs=209.1
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.+.++++|++..| |||+||.|++++++ +|++.+ .+.+..+|+++|+||+|||||||
T Consensus 36 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~~~~~~~A~aiEliH~asLiHDD 97 (334)
T 3pko_A 36 VQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------PAQLQAGAAAIEILHVGTLIHDD 97 (334)
T ss_dssp CCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 4678899999999999988 99999999999999 664211 24678999999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 160 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 160 (243)
|||+|++|||+||+|.+||++.|||+||+|+++|++.+++..+ +++++.+++++..++.||..|+.+..+..+++++|+
T Consensus 98 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl 177 (334)
T 3pko_A 98 VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYL 177 (334)
T ss_dssp HHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHH
T ss_pred cCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999988655 889999999999999999999998877788999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHh
Q 026139 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240 (243)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al 240 (243)
+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+++++
T Consensus 178 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al 257 (334)
T 3pko_A 178 NEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSL 257 (334)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHG
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 026139 241 EI 242 (243)
Q Consensus 241 ~~ 242 (243)
++
T Consensus 258 ~~ 259 (334)
T 3pko_A 258 SH 259 (334)
T ss_dssp GG
T ss_pred Hh
Confidence 74
No 9
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=5.9e-62 Score=437.15 Aligned_cols=221 Identities=29% Similarity=0.404 Sum_probs=188.5
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.|.++++|++..| |||+||.|++++++++|.... +.++.+|+++|+||+|||||||
T Consensus 55 ~~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~~~~~A~avEliH~asLIHDD 116 (360)
T 3lmd_A 55 LSSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------ENVIKAAVVVEITHLATLYHDD 116 (360)
T ss_dssp HTCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHHHHHHHHhCC
Confidence 3567899999999999988 999999999999999873221 3578899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~ 161 (243)
|||+|.+|||+||+|.+||++.|||+||||+++|++.+++.+ +++++.+++++.+++.||++|+.+..+. +++++|++
T Consensus 117 ImD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~t~~~y~~ 194 (360)
T 3lmd_A 117 VMDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT-DPIEHYTN 194 (360)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHHHHH
T ss_pred CcCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHH
Confidence 999999999999999999999999999999999999999875 5899999999999999999999988766 89999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||++++++
T Consensus 195 ~i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~ 274 (360)
T 3lmd_A 195 VIREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALR 274 (360)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 275 ~ 275 (360)
T 3lmd_A 275 E 275 (360)
T ss_dssp C
T ss_pred c
Confidence 4
No 10
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=2.1e-61 Score=424.61 Aligned_cols=219 Identities=32% Similarity=0.378 Sum_probs=186.8
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.|.++++|.+..| |||+||.|++++++++|++.+ +.++.+|+++|+||++|||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLIHDDIP~ 95 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDYQVAASLEMIHTYSLIHDDLPA 95 (302)
T ss_dssp CCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 4688999999999988 999999999999999987542 25688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHH--HHHHHHhHHhhcccCCCCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQRCS 155 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~~ 155 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++... .++++.+++++ ..++.||.+|+.+... .++
T Consensus 96 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~-~~t 174 (302)
T 3p8l_A 96 MDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV-SLT 174 (302)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCC
T ss_pred ccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-CCC
Confidence 999999999999999999999999999999999999988532 36778888886 6899999999998765 689
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHH
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSL 235 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p 235 (243)
+++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.++|+++||+|||
T Consensus 175 ~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p 254 (302)
T 3p8l_A 175 LEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYP 254 (302)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 026139 236 LFIASEI 242 (243)
Q Consensus 236 ~~~al~~ 242 (243)
+++++++
T Consensus 255 ~l~~l~~ 261 (302)
T 3p8l_A 255 ALLGIAG 261 (302)
T ss_dssp HHHCHHH
T ss_pred HHHHHHH
Confidence 9999975
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=1.4e-61 Score=426.34 Aligned_cols=218 Identities=26% Similarity=0.322 Sum_probs=192.1
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHH--HHHHHHHHHHHHHHHHHhhc
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ--QCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lA~aiEliH~asLIhDDI 82 (243)
.++.|.++++|.+..| |||+||.|++++++++|++.+ ++ ..+|+++|+||++|||||||
T Consensus 32 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~~~A~aiEliH~aSLIHDDi 92 (309)
T 3pde_A 32 QDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------PERHWRPVMALELLHTYSLIHDDL 92 (309)
T ss_dssp SCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------HHhHhHHHHHHHHHHHHHHHHCCc
Confidence 3688999999999988 999999999999999987543 34 78999999999999999999
Q ss_pred --cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHH--HHHHHHhHHhhcccCCCC
Q 026139 83 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (243)
Q Consensus 83 --~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (243)
||+|++|||+||+|++||++.|||+||+|+++|++.+++... .++++.+++++ ..++.||.+|+.+... .
T Consensus 93 P~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~-~ 171 (309)
T 3pde_A 93 PAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV-N 171 (309)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-C
T ss_pred hhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC-C
Confidence 999999999999999999999999999999999999988642 36788888886 6899999999998755 6
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 154 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
+++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.++|+++||+|
T Consensus 172 ~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 251 (309)
T 3pde_A 172 LPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNT 251 (309)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSS
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCcc
Confidence 89999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 026139 234 SLLFIASEI 242 (243)
Q Consensus 234 ~p~~~al~~ 242 (243)
||+++++++
T Consensus 252 ~p~l~al~~ 260 (309)
T 3pde_A 252 YPGKLGLIG 260 (309)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 12
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=1.9e-61 Score=434.48 Aligned_cols=218 Identities=28% Similarity=0.398 Sum_probs=198.5
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~ 85 (243)
+|.+.++++|++..| |||+||.|++++++++|++.+ +++.+|+++|+||+||||||||||+
T Consensus 30 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHDDI~D~ 90 (358)
T 4dhd_A 30 AEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQWR-----------------PALPAAAIVELIHNYSLIYDDIIDR 90 (358)
T ss_dssp CHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCccccC
Confidence 689999999999988 999999999999999987532 4678999999999999999999999
Q ss_pred CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHHhHHhhccc-----------CCC-
Q 026139 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTS-----------SDQ- 152 (243)
Q Consensus 86 s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~-----------~~~- 152 (243)
|++|||+||+|.+||++.|||+||+|+++|++.+.+... .++++.+++++..++.||.+|+.+. .+.
T Consensus 91 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~ 170 (358)
T 4dhd_A 91 GDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWR 170 (358)
T ss_dssp CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCS
T ss_pred CCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCC
Confidence 999999999999999999999999999999999876543 6899999999999999999999987 444
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 153 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
.+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+
T Consensus 171 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~ 250 (358)
T 4dhd_A 171 EVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKR 250 (358)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBS
T ss_pred CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCCh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -hHHHHHHhhc
Q 026139 233 -LSLLFIASEI 242 (243)
Q Consensus 233 -T~p~~~al~~ 242 (243)
|||+++++++
T Consensus 251 ~T~p~i~al~~ 261 (358)
T 4dhd_A 251 GNAVVAVALSH 261 (358)
T ss_dssp CSHHHHHHHHH
T ss_pred hhHHHHHHHHh
Confidence 9999999975
No 13
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=1.7e-61 Score=431.28 Aligned_cols=218 Identities=26% Similarity=0.257 Sum_probs=203.5
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+.+|.+.++++|++..| |||+||.+++++++++|++. +.++.+|+++|+||+||||||||
T Consensus 21 ~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLihDDi 81 (330)
T 1wmw_A 21 DHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAPL-----------------EAGLEAATALELFQNWVLVHDDI 81 (330)
T ss_dssp CCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHccc
Confidence 456789999999999988 99999999999999998531 35688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhHHhhcc-cCC-CCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGETMQMTT-SSD-QRCS 155 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~d~~~-~~~-~~~~ 155 (243)
||+|.+|||+||+|.+||++.|||+||+|+++|++.+++..+ .++++.+++++.+++.||++|+.+ ..+ ..++
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 161 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLR 161 (330)
T ss_dssp HHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred ccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999999999999999999987533 689999999999999999999998 776 6789
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 156 MDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
+++|++|+++|||+| |++||++|++++|++++.. +++||.++|++|||+||++|++++++ +||+.|+||++||+||
T Consensus 162 ~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~ 238 (330)
T 1wmw_A 162 PEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTL 238 (330)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCH
Confidence 999999999999999 9999999999999887766 99999999999999999999999999 9999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 239 p~i~al~~ 246 (330)
T 1wmw_A 239 ILLRFLEE 246 (330)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999974
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=1.7e-61 Score=425.72 Aligned_cols=218 Identities=29% Similarity=0.369 Sum_probs=190.9
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||++|||||||
T Consensus 26 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~ 86 (301)
T 1rtr_A 26 MDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAIALEMIHTYSLIHDDLPA 86 (301)
T ss_dssp SCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4678999999999888 99999999999999998642 13577999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC------CcHHHHHHHHHHH--HHHHHHhHHhhcccCCCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EHLVTGETMQMTTSSDQRC 154 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~------~~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~ 154 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++. ...++++.+++++ ..++.||++|+.+..+ ..
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~-~~ 165 (301)
T 1rtr_A 87 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ-PI 165 (301)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CC
T ss_pred ccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC-CC
Confidence 9999999999999999999999999999999999999987 2456888899988 8899999999998765 78
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.++|+++||+||
T Consensus 166 ~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~ 245 (301)
T 1rtr_A 166 DLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTY 245 (301)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCH
T ss_pred CHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 246 p~l~al~~ 253 (301)
T 1rtr_A 246 VSLLGKDG 253 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 15
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.5e-61 Score=427.26 Aligned_cols=219 Identities=29% Similarity=0.388 Sum_probs=186.9
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.|.++++|.+..| |||+||.|++++++++|++.+ +++.+|+++|+||++|||||||
T Consensus 58 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~aSLIHDDIP~ 118 (324)
T 3uca_A 58 YNKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDYK-----------------KILTPAMAIEMIHTYSLIHDDLPC 118 (324)
T ss_dssp SCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCGG-----------------GGHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCCchh
Confidence 3789999999999888 999999999999999987532 4678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC--c----HHHHHHHHHHH--HHHHHHhHHhhcccCCCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVTLLATVV--EHLVTGETMQMTTSSDQRC 154 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~ 154 (243)
||+|++|||+||+|++||++.|||+||+|+++|++.+++.. + .++++.++++. ..++.||.+|+.+..+..+
T Consensus 119 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~ 198 (324)
T 3uca_A 119 MDNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEI 198 (324)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSC
T ss_pred ccCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999888742 1 46778888875 6899999999999877688
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+||
T Consensus 199 t~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~ 278 (324)
T 3uca_A 199 SLKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNY 278 (324)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CH
T ss_pred CHHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 279 p~l~al~~ 286 (324)
T 3uca_A 279 ITIFGLEE 286 (324)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 16
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=2.1e-61 Score=424.89 Aligned_cols=209 Identities=27% Similarity=0.404 Sum_probs=197.7
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 026139 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (243)
Q Consensus 11 ~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~~RR 90 (243)
++++|++..| |||+||.+++++++++|++.. +.++.+|+++|+||+||||||||||+|++||
T Consensus 30 ~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLiHDDi~D~s~~RR 91 (299)
T 1v4e_A 30 EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSLAALELVHLASLLHDDVIDGARFRR 91 (299)
T ss_dssp HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 7889999888 999999999999999986211 2468899999999999999999999999999
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHH
Q 026139 91 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL 170 (243)
Q Consensus 91 g~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l 170 (243)
|+||+|.+||++.|||+||+|+++|++.+++..+.++++.+++++..++.||++|+.+..+. +++++|++|+++|||+|
T Consensus 92 G~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~y~~~i~~KTa~L 170 (299)
T 1v4e_A 92 GKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGAL 170 (299)
T ss_dssp TEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHTHHH
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC-CCHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999988889999999999999999999999988766 89999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 171 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 171 ~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
|++||++|++++|+++ +.+++||.++|++|||+||++|++++ +.+||+.|+||++||+|||+++++++
T Consensus 171 ~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~ 238 (299)
T 1v4e_A 171 FGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEK 238 (299)
T ss_dssp HHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHh
Confidence 9999999999999876 78999999999999999999999999 99999999999999999999999975
No 17
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.7e-61 Score=432.65 Aligned_cols=220 Identities=20% Similarity=0.289 Sum_probs=195.1
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
.+.++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++|+||+||||||||
T Consensus 22 ~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHDDI 82 (340)
T 2e8v_A 22 SQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVELLHNSSLLIDDI 82 (340)
T ss_dssp HHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCcc
Confidence 345688999999999988 99999999999999997531 35688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHH-----HHHHHHHHHHHHHHHhHHhhcccCCC---CC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQMTTSSDQ---RC 154 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~-----~~~~~~~~~~~~~~Gq~~d~~~~~~~---~~ 154 (243)
||+|.+|||+||+|.+||++.|||+||||+++|++.+++..+++ +++.+++++.+++.||++|+.+..+. .+
T Consensus 83 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp HTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred ccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999999999887665 89999999999999999999886553 57
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
++++|++|+++|||+||+++|++|+++++.++ ..+.+++||.++|++|||+||++|++++++.+||+.|+||++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 99999999999999999999999999999887 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 242 p~i~al~~ 249 (340)
T 2e8v_A 242 PIVHALNF 249 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999974
No 18
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=4e-61 Score=426.01 Aligned_cols=218 Identities=28% Similarity=0.318 Sum_probs=188.4
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.|.++++|.+..| |||+||.|++++++++|++.+ .+..+|+++|+||++|||||||
T Consensus 34 ~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~avEliH~aSLIHDDip~ 94 (324)
T 3ts7_A 34 MPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAAD-----------------LLDGPACAVEFIHVYSLIHDDLPA 94 (324)
T ss_dssp SSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCGG-----------------GTHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHhhcCccc
Confidence 3679999999999988 999999999999999987532 3678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC--c------HHHHHHHHHHH--HHHHHHhHHhhcccCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++.. + .++++.+++++ ..++.||.+|+.+...
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~- 173 (324)
T 3ts7_A 95 MDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK- 173 (324)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-
T ss_pred ccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCC-
Confidence 99999999999999999999999999999999999998864 2 36778888875 7899999999998776
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 153 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
.+++++|++|+++|||+||++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||
T Consensus 174 ~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK 253 (324)
T 3ts7_A 174 KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNK 253 (324)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------C
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCC
Confidence 7899999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhc
Q 026139 232 YLSLLFIASEI 242 (243)
Q Consensus 232 ~T~p~~~al~~ 242 (243)
+|||+++++++
T Consensus 254 ~T~p~l~gle~ 264 (324)
T 3ts7_A 254 PNYPALLGLSG 264 (324)
T ss_dssp CCHHHHHCHHH
T ss_pred ccHHHHHHHHH
Confidence 99999999875
No 19
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=1.4e-60 Score=421.28 Aligned_cols=217 Identities=27% Similarity=0.365 Sum_probs=177.9
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.|.++++|.+..| |||+||.|++++++++|++. +.+..+|+++|+||++||||||| |
T Consensus 30 ~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLIHDDip~m 90 (317)
T 4f62_A 30 ANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS-----------------SLTDASAAALESIHAYSLIHDDLPAM 90 (317)
T ss_dssp GHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 689999999999888 99999999999999998653 35788999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHHH--HHHHHHhHHhhcccCCCCCC
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLATVV--EHLVTGETMQMTTSSDQRCS 155 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~~ 155 (243)
|+|++|||+||+|.+||++.|||+||+|+++|++.+++..+ .++++.+++++ ..++.||.+|+.+... .++
T Consensus 91 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~-~~t 169 (317)
T 4f62_A 91 DNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENK-NIS 169 (317)
T ss_dssp CC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSS-CCC
T ss_pred cCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCC-CCC
Confidence 99999999999999999999999999999999999988632 35777788776 4799999999998754 589
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 156 MDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
+++|++|+++|||+||++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+||
T Consensus 170 ~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~ 249 (317)
T 4f62_A 170 LAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATY 249 (317)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 250 p~l~gle~ 257 (317)
T 4f62_A 250 PKLLGLDG 257 (317)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 20
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=1.4e-61 Score=426.41 Aligned_cols=218 Identities=21% Similarity=0.231 Sum_probs=197.0
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 026139 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (243)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDD 81 (243)
+.+.+|.|.++++|++..| |||+||.+++++++++|.+. +.+..+|+++|+||+|||||||
T Consensus 6 ~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHDD 66 (301)
T 2q80_A 6 QETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASLLIDD 66 (301)
T ss_dssp -CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcc
Confidence 5677899999999999988 99999999999999997531 3568899999999999999999
Q ss_pred ccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHH
Q 026139 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYM 160 (243)
Q Consensus 82 I~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~ 160 (243)
|||+|.+|||+||+|.+||++.|||+||+|+++|++.+++.+++++++.+++.+.+++.||++|+.+..+. .+++++|+
T Consensus 67 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~ 146 (301)
T 2q80_A 67 IEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYK 146 (301)
T ss_dssp HHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999998778899999999999999999999886543 67999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHh
Q 026139 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIAS 240 (243)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al 240 (243)
+|+++|||+||+++|++|+++++.++ .+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+++++
T Consensus 147 ~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~al 222 (301)
T 2q80_A 147 AMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAI 222 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHHH
Confidence 99999999999999999999999773 48999999999999999999999999999999999999999999999998
Q ss_pred hc
Q 026139 241 EI 242 (243)
Q Consensus 241 ~~ 242 (243)
++
T Consensus 223 ~~ 224 (301)
T 2q80_A 223 WS 224 (301)
T ss_dssp HH
T ss_pred Hc
Confidence 73
No 21
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=6.4e-61 Score=426.93 Aligned_cols=218 Identities=27% Similarity=0.360 Sum_probs=187.2
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||++|||||||
T Consensus 69 ~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDiPa 129 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA-----------------EAGLHVGAALECLHCYSLVHDDLPA 129 (335)
T ss_dssp CCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 4689999999999888 99999999999999998641 34688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC-------CcHHHHHHHHHHH--HHHHHHhHHhhcccCCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-------KNTEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~-------~~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++. ...++++.+++++ ..++.||++|+.+..+ .
T Consensus 130 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~ 208 (335)
T 2h8o_A 130 MDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK-A 208 (335)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS-C
T ss_pred ccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-C
Confidence 9999999999999999999999999999999999999986 1346888899988 8899999999998766 7
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 154 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
.++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+|
T Consensus 209 ~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 288 (335)
T 2h8o_A 209 PDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGT 288 (335)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCC
T ss_pred CCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 026139 234 SLLFIASEI 242 (243)
Q Consensus 234 ~p~~~al~~ 242 (243)
||+++++++
T Consensus 289 ~p~l~~le~ 297 (335)
T 2h8o_A 289 LVALRGEAW 297 (335)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 22
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=4.3e-61 Score=423.15 Aligned_cols=217 Identities=30% Similarity=0.354 Sum_probs=189.7
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.+.++++|.+..| |||+||.|++++++++|++.+ .+..+|+++|+||++||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLIHDDip~m 89 (304)
T 3lsn_A 29 LARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKPE-----------------QANGAACAVELIHAYSLVHDDLPAM 89 (304)
T ss_dssp GHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCCcccc
Confidence 578999999999888 999999999999999986532 3678999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC----c----HHHHHHHHHHH--HHHHHHhHHhhcccCCCC
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----N----TEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~----~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (243)
|+|++|||+||+|++||++.|||+||+|+++|++.+++.. + .++++.+++++ ..++.||.+|+.+... .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~-~ 168 (304)
T 3lsn_A 90 DDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGL-K 168 (304)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-C
T ss_pred cCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCC-C
Confidence 9999999999999999999999999999999999999864 2 35778888887 4599999999998765 5
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 154 ~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~-~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
+++++|++|+++|||+||++||++|++++|+ +++..+.+++||.++|++|||+||++|++++++.+||+.++|+++||+
T Consensus 169 ~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~ 248 (304)
T 3lsn_A 169 LDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKP 248 (304)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCc
Confidence 8999999999999999999999999999999 888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 026139 233 LSLLFIASEI 242 (243)
Q Consensus 233 T~p~~~al~~ 242 (243)
|||+++++++
T Consensus 249 T~p~l~~l~~ 258 (304)
T 3lsn_A 249 TYPALLGLAA 258 (304)
T ss_dssp CHHHHHCHHH
T ss_pred cHHHHHHHHH
Confidence 9999999975
No 23
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=5.2e-61 Score=422.65 Aligned_cols=217 Identities=27% Similarity=0.387 Sum_probs=201.6
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||++||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~~ 89 (299)
T 1rqj_A 29 NTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_dssp TSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHhHHHhCCChhh
Confidence 678999999999888 99999999999999998642 35688999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC-----C---cHHHHHHHHHHH--HHHHHHhHHhhcccCCCC
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----K---NTEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~-----~---~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (243)
|+|++|||+||+|.+||++.|||+||+|+++|++.+++. + ..++++.+++++ ..++.||.+|+.+..+ .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~-~ 168 (299)
T 1rqj_A 90 DDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK-H 168 (299)
T ss_dssp TCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT-C
T ss_pred cCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC-C
Confidence 999999999999999999999999999999999999884 1 236778888886 7999999999998766 7
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 154 CSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 154 ~~~~~y~~~~~~KTa~l~~~~~~~ga~l-a~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
.++++|++|+++|||+||++||++|+++ +|++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++||+
T Consensus 169 ~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~ 248 (299)
T 1rqj_A 169 VPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCC
Confidence 8999999999999999999999999999 998888999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhc
Q 026139 233 LSLLFIASEI 242 (243)
Q Consensus 233 T~p~~~al~~ 242 (243)
|||+++++++
T Consensus 249 T~p~l~~l~~ 258 (299)
T 1rqj_A 249 TYPALLGLEQ 258 (299)
T ss_dssp CHHHHHCHHH
T ss_pred cHHHHHHHHH
Confidence 9999999864
No 24
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=6.9e-61 Score=421.73 Aligned_cols=218 Identities=27% Similarity=0.353 Sum_probs=172.8
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.|.++++|++..| |||+||.|++++++++|++.+ .+..+|+++|+||++|||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLIHDDIp~ 94 (302)
T 3p8r_A 34 QTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCELS-----------------DLDTPASAVECIHAYSLIHDDLPA 94 (302)
T ss_dssp TTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCGG-----------------GTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCCccc
Confidence 3678999999999988 999999999999999987532 3678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC--c------HHHHHHHHHHH--HHHHHHhHHhhcccCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++.. + .++++.+++++ ..++.||.+|+.+.. .
T Consensus 95 mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~-~ 173 (302)
T 3p8r_A 95 MDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAEN-R 173 (302)
T ss_dssp HHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-S
T ss_pred ccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC-C
Confidence 99999999999999999999999999999999999999864 1 35778888876 689999999999874 4
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 153 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
.+++++|++|+++|||+||++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+||+.++|+++||
T Consensus 174 ~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK 253 (302)
T 3p8r_A 174 LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNK 253 (302)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------C
T ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCC
Confidence 7899999999999999999999999999999 788888999999999999999999999999999999999999999999
Q ss_pred chHHHHHHhhc
Q 026139 232 YLSLLFIASEI 242 (243)
Q Consensus 232 ~T~p~~~al~~ 242 (243)
+|||+++++++
T Consensus 254 ~T~p~l~~l~~ 264 (302)
T 3p8r_A 254 STYPALLGLEG 264 (302)
T ss_dssp CCHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 99999999975
No 25
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.7e-60 Score=419.35 Aligned_cols=218 Identities=27% Similarity=0.386 Sum_probs=187.0
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.|.++++|.+..| |||+||.|++++++++|++. +.+..+|+++|+||++|||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDip~ 94 (313)
T 3lom_A 34 PAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVDQ-----------------GVLDIIAAALELTHCYSLIHDDLPA 94 (313)
T ss_dssp CCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCccc
Confidence 3689999999999988 99999999999999998642 45789999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC--C------cHHHHHHHHHHH--HHHHHHhHHhhcccCCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K------NTEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~--~------~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (243)
||+|++|||+||+|++||++.|||+||+|+++|++.+++. + ..++++.+++++ ..++.||.+|+.+..+.
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 174 (313)
T 3lom_A 95 MDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKS 174 (313)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSS
T ss_pred ccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCC
Confidence 9999999999999999999999999999999999988864 1 134677778776 68999999999998776
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcc
Q 026139 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHV 230 (243)
Q Consensus 153 ~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~g 230 (243)
.+++++|++|+++|||+||++||++ ++++| ++++..+.+++||.++|++|||+||++|++++++.+||+.|+|+++|
T Consensus 175 ~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~g 253 (313)
T 3lom_A 175 SVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQ 253 (313)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcC
Confidence 8899999999999999999999999 99999 89999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHhhc
Q 026139 231 IYLSLLFIASEI 242 (243)
Q Consensus 231 k~T~p~~~al~~ 242 (243)
|+|||+++++++
T Consensus 254 K~T~p~l~~l~~ 265 (313)
T 3lom_A 254 KTTFATLFNKQQ 265 (313)
T ss_dssp CCCHHHHSCHHH
T ss_pred CccHHHHHHHHH
Confidence 999999999875
No 26
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-60 Score=412.71 Aligned_cols=214 Identities=26% Similarity=0.362 Sum_probs=190.5
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--
Q 026139 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (243)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI-- 82 (243)
.++.+.++++|++..| |||+||.+++++++++|++. +.++.+|+++|+||+||||||||
T Consensus 30 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDIP~ 90 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAVELFHTASLIHDDLPP 90 (284)
T ss_dssp SCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4578999999999988 99999999999999998641 34688999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHHH
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQ 161 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~ 161 (243)
||+|++|||+||+|.+||++.|||+||+|+++|++.+++.++.++++.+++++..++.||.+|+.+..+. .+++++|++
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~ 170 (284)
T 2ftz_A 91 IDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVER 170 (284)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred cCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998767899999999999999999999987665 789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|+++|||+||++||++|++++|++++ .+++||.++|++|||+||++|++++++.+||+.|+|++ |+|||++++++
T Consensus 171 i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~~l~ 245 (284)
T 2ftz_A 171 MYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXVGIQ 245 (284)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHCHH
T ss_pred HHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHHHHH
Confidence 99999999999999999999998876 89999999999999999999999999999999999999 99999999987
Q ss_pred c
Q 026139 242 I 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 246 ~ 246 (284)
T 2ftz_A 246 X 246 (284)
T ss_dssp H
T ss_pred H
Confidence 4
No 27
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=2.6e-60 Score=416.92 Aligned_cols=214 Identities=29% Similarity=0.356 Sum_probs=177.3
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.|.++++|. ..| |||+||.|++++++++|++. +.+..+|+++|+||++||||||| |
T Consensus 27 ~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDip~m 86 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGISM-----------------AQAMPAALAVEALHAYSLVHDDMPCM 86 (297)
T ss_dssp CSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 57899999999 878 99999999999999998642 35789999999999999999999 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc------HHHHHHHHHHH--HHHHHHhHHhhcccC-CCCC
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLATVV--EHLVTGETMQMTTSS-DQRC 154 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~-~~~~ 154 (243)
|+|++|||+||+|++||++.|||+||+|+++|++.+++... .++++.+++++ ..++.||.+|+.+.. ...+
T Consensus 87 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~ 166 (297)
T 3m0g_A 87 DNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPL 166 (297)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCC
T ss_pred CCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCC
Confidence 99999999999999999999999999999999999987631 36888899988 889999999999872 3378
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
++++|++|+++|||+||++||++|+++++++++ .+++||.++|++|||+||++|++++++.+||+.++|+++||+||
T Consensus 167 ~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~ 243 (297)
T 3m0g_A 167 TLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATF 243 (297)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCH
T ss_pred CHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccH
Confidence 999999999999999999999999999998876 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 244 p~l~~l~~ 251 (297)
T 3m0g_A 244 VSLLGLAG 251 (297)
T ss_dssp HHHHCSSH
T ss_pred HHHHHHHH
Confidence 99999875
No 28
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=9.5e-60 Score=426.02 Aligned_cols=222 Identities=27% Similarity=0.325 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 026139 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (243)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~ 87 (243)
.+.+++.|++..| |||+||+|++++++++|+..+.. +..+.++++|+++||||++|||||||||+|+
T Consensus 49 ~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~~~~~~~~~AaaiEliH~asLIHDDImD~s~ 115 (380)
T 3lk5_A 49 DAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------EKLESVLDAAASLEFIQACALIHDDIIDSSD 115 (380)
T ss_dssp HHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------SCHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------CCHHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence 3677777888888 99999999999999998742110 1135688999999999999999999999999
Q ss_pred CCCCCCchhhh----------------hchHHHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHHhHHhh
Q 026139 88 TRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGETMQM 146 (243)
Q Consensus 88 ~RRg~pt~~~~----------------~G~~~Ail~Gd~ll~~a~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~d~ 146 (243)
+|||+||+|++ ||++.|||+||+|+++|++.+++... .++++.++.+..+++.||++|+
T Consensus 116 ~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl 195 (380)
T 3lk5_A 116 TRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDI 195 (380)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 59999999999999999999998542 3677788888899999999999
Q ss_pred cccCCCCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchh
Q 026139 147 TTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 225 (243)
Q Consensus 147 ~~~~~~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~ 225 (243)
.+..+...++++|++|+++|||+| |++||++|++++|++++..+.+++||+++|++|||+||++|++++++.+||+.|+
T Consensus 196 ~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~ 275 (380)
T 3lk5_A 196 YLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGD 275 (380)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTH
T ss_pred HhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchh
Confidence 988777789999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccchHHHHHHhhc
Q 026139 226 DIRHVIYLSLLFIASEI 242 (243)
Q Consensus 226 Dl~~gk~T~p~~~al~~ 242 (243)
||++||+|||+++++++
T Consensus 276 Dl~egK~T~p~i~al~~ 292 (380)
T 3lk5_A 276 DIREGKRTVLLALALQR 292 (380)
T ss_dssp HHHTTCCCHHHHHHHHH
T ss_pred hHhcCCchHHHHHHHHh
Confidence 99999999999999974
No 29
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=8.8e-60 Score=412.28 Aligned_cols=218 Identities=28% Similarity=0.358 Sum_probs=185.8
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Q 026139 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (243)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI- 82 (243)
+.+|.+.++++|++..| |||+||.|++++++++|++. .+++..+|+++|+||++|||||||
T Consensus 22 ~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~~----------------~~~~~~~A~aiEliH~aSLIHDDIp 83 (291)
T 3npk_A 22 SFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPEL----------------LNQALDVALALEFIHTYSLIHDDLP 83 (291)
T ss_dssp SSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGGG----------------HHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCc----------------HHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999888 99999999999999997531 246789999999999999999999
Q ss_pred -cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC--c---HHHHHHHHHH--HHHHHHHhHHhhcccCCCCC
Q 026139 83 -LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N---TEVVTLLATV--VEHLVTGETMQMTTSSDQRC 154 (243)
Q Consensus 83 -~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~--~---~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~ 154 (243)
||+|++|||+||+|++||++.|||+||+|+++|++.+++.. . .++++.++++ +..++.||.+|+.+... .+
T Consensus 84 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~-~~ 162 (291)
T 3npk_A 84 AMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-RL 162 (291)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CC
T ss_pred cccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC-CC
Confidence 99999999999999999999999999999999999998753 1 3577888888 88999999999988653 67
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
+.++|.+|+++|||+||++||++|+++++++++..+.+++||.++|++|||+||++|++++++.+||+.+.| +||+||
T Consensus 163 ~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~ 240 (291)
T 3npk_A 163 SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSF 240 (291)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCH
T ss_pred CHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchH
Confidence 999999999999999999999999999999999899999999999999999999999999999999998776 999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 241 p~l~~l~~ 248 (291)
T 3npk_A 241 VNLLGLEQ 248 (291)
T ss_dssp HHHHCHHH
T ss_pred HHHHHHHH
Confidence 99999975
No 30
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=1.9e-59 Score=413.67 Aligned_cols=223 Identities=26% Similarity=0.319 Sum_probs=189.7
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc-
Q 026139 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (243)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI- 82 (243)
+.+|.|.++++|.+..| |||+||.|++++++++|++.. ..+..+.+..+|+++|+||++|||||||
T Consensus 31 ~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiEliH~aSLIHDDIp 97 (311)
T 3llw_A 31 SFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIECLHTYSLIHDDLP 97 (311)
T ss_dssp SSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999988 999999999999999986421 1123357889999999999999999999
Q ss_pred -cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHc--CCc---HHHHHHHHHH--HHHHHHHhHHhhcccCCCCC
Q 026139 83 -LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTGETMQMTTSSDQRC 154 (243)
Q Consensus 83 -~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~--~~~---~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~ 154 (243)
||+|++|||+||+|++||++.|||+||+|+++|++.+++ .+. .++++.++++ +..++.||.+|+.+.. ..+
T Consensus 98 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~-~~~ 176 (311)
T 3llw_A 98 CMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFEN-TPL 176 (311)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-SCC
T ss_pred ccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-CCC
Confidence 999999999999999999999999999999999999987 333 2577788887 5799999999999863 468
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~-~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
++++|.+|+++|||+||++||++|+++++++++.. +.+++||.++|++|||+||++|++++++.+||+.++ ++||+|
T Consensus 177 t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T 254 (311)
T 3llw_A 177 NLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNS 254 (311)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSC
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcch
Confidence 99999999999999999999999999999998888 999999999999999999999999999999999766 999999
Q ss_pred HHHHHHhhc
Q 026139 234 SLLFIASEI 242 (243)
Q Consensus 234 ~p~~~al~~ 242 (243)
||+++++++
T Consensus 255 ~p~l~~l~~ 263 (311)
T 3llw_A 255 FVNLLGLER 263 (311)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHH
Confidence 999999975
No 31
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=3.4e-59 Score=413.12 Aligned_cols=208 Identities=31% Similarity=0.407 Sum_probs=176.0
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 026139 14 EYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIG 93 (243)
Q Consensus 14 ~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~~RRg~p 93 (243)
.|.+..| |||+||.|++++++..+ . ....+++..+|+++|+||+||||||||||+|++|||+|
T Consensus 28 ~y~~~~g--GKrlRp~l~l~~~~~~~----~-----------~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~p 90 (315)
T 3tc1_A 28 LFSKIGP--SKMLRSKLMLALLNEKT----D-----------AILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLP 90 (315)
T ss_dssp HHTTCCC--CCCHHHHHHHTTCCTTC----C-----------HHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhcCC--cccHHHHHHHHHhccCc----c-----------ccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCc
Confidence 5666678 99999999998877211 1 11235678999999999999999999999999999999
Q ss_pred chhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHH
Q 026139 94 SLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 173 (243)
Q Consensus 94 t~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~ 173 (243)
|+|.+||++.|||+||+|+++|++.+++.+ +++++.+++++..++.||++|+.+..+..+++++|++|+++|||+||++
T Consensus 91 t~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 169 (315)
T 3tc1_A 91 SINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEA 169 (315)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999999886 8999999999999999999999998777889999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 174 ~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
||++|++++|++ .+.+++||.++|++|||+||++|++++++.+||+.|+||++||+|||+++++++
T Consensus 170 ~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~ 235 (315)
T 3tc1_A 170 SLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTT
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHh
Confidence 999999999988 678999999999999999999999999999999999999999999999999975
No 32
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=2e-58 Score=417.27 Aligned_cols=223 Identities=21% Similarity=0.206 Sum_probs=201.8
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~ 85 (243)
++.|.++++|.+ .| |||+||++++++++++|++.... .+..+.+..+|+++|+||++|||||||||+
T Consensus 63 ~~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~----------~~~~~~a~~~A~avEliH~asLIHDDImD~ 129 (374)
T 2qis_A 63 IARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQD----------ADSLQRAWTVGWCVELLQAFFLVADDIMDS 129 (374)
T ss_dssp HHHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCccc----------hHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 468899999987 58 99999999999999998632100 122346788999999999999999999999
Q ss_pred CCCCCCCCchhhhhchH-HHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHhHHhhcccCCC-----CC
Q 026139 86 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RC 154 (243)
Q Consensus 86 s~~RRg~pt~~~~~G~~-~Ail~Gd~ll~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~ 154 (243)
|++|||+||+|++||++ .||+.||++++.++..+++. .+.++++.+++++..++.||++|+.+.... .+
T Consensus 130 s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~ 209 (374)
T 2qis_A 130 SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 209 (374)
T ss_dssp CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGC
T ss_pred CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 99999999999999999 99999999999999888753 357899999999999999999999886541 37
Q ss_pred CHHHHHHHHhhhhHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccc
Q 026139 155 SMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIY 232 (243)
Q Consensus 155 ~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~ 232 (243)
++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+|| .|+||++||+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~ 288 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKC 288 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCC
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCc
Confidence 9999999999999999 9999999999999 99999999999999999999999999999999999999 8999999999
Q ss_pred hHHHHHHhhc
Q 026139 233 LSLLFIASEI 242 (243)
Q Consensus 233 T~p~~~al~~ 242 (243)
|||+++++++
T Consensus 289 T~p~l~al~~ 298 (374)
T 2qis_A 289 SWLVVQCLQR 298 (374)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHh
Confidence 9999999975
No 33
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=3.2e-58 Score=414.94 Aligned_cols=222 Identities=22% Similarity=0.180 Sum_probs=201.0
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026139 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (243)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s 86 (243)
+.+.++++|.+ .| |||+||.+++++++++|++.+.. .+..+.+..+|+++|+||++|||||||||+|
T Consensus 57 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNA-PG--GKCNRGLTVVAAYRELSGPGQKD----------AESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHCCGGGCS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhc-CC--CcchhHHHHHHHHHHhCCCccCC----------hhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 58899999988 48 99999999999999998631100 1223467899999999999999999999999
Q ss_pred CCCCCCCchhhhhchH-HHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHhHHhhcccCCC-----CCC
Q 026139 87 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 155 (243)
Q Consensus 87 ~~RRg~pt~~~~~G~~-~Ail~Gd~ll~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~~ 155 (243)
.+|||+||+|.+||++ .+|+.||++++.++..+++. .+.++++.+++++..++.||++|+.+.... ..+
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 89999999999999888864 357899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccch
Q 026139 156 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYL 233 (243)
Q Consensus 156 ~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T 233 (243)
+++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHhhc
Q 026139 234 SLLFIASEI 242 (243)
Q Consensus 234 ~p~~~al~~ 242 (243)
||+++++++
T Consensus 283 ~p~l~al~~ 291 (367)
T 1uby_A 283 WLVVQCLQR 291 (367)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999975
No 34
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.1e-58 Score=418.35 Aligned_cols=220 Identities=22% Similarity=0.220 Sum_probs=183.5
Q ss_pred hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 026139 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (243)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~ 87 (243)
.+..+.+|.+. | |||+||+|++++++++++.... .+..++++.+|+||||||+||||||||||+|.
T Consensus 67 ~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s~ 132 (395)
T 3mav_A 67 YYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKGE 132 (395)
T ss_dssp HHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 45566778775 8 9999999999999999875432 24457789999999999999999999999999
Q ss_pred CCCCCCchhhhhchHHHHHHHHHHHH--HHHHHHHc-----CCcHHHHHHHHHHHHHHHHHhHHhhcccCC---------
Q 026139 88 TRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALAS-----LKNTEVVTLLATVVEHLVTGETMQMTTSSD--------- 151 (243)
Q Consensus 88 ~RRg~pt~~~~~G~~~Ail~Gd~ll~--~a~~~l~~-----~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~--------- 151 (243)
+|||+||+|++||++.||++||+++. .++.++.. ....++++.+++++..++.||.+|+.+...
T Consensus 133 ~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~ 212 (395)
T 3mav_A 133 MRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREI 212 (395)
T ss_dssp EETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCC
T ss_pred CCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHh
Confidence 99999999999999999999998774 44555543 124689999999999999999999865321
Q ss_pred ---------------CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHhHHHhhhccc
Q 026139 152 ---------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDFT 213 (243)
Q Consensus 152 ---------------~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~--~~~~~~l~~~g~~lG~afQi~DD~~D~~ 213 (243)
...++++|++|+++|||+| |.+||.+|++++|.+ +...+.+++||.++|+||||+||++|++
T Consensus 213 ~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 213 DVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp CSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2358999999999999999 999999999999864 4467899999999999999999999999
Q ss_pred CCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 214 GTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 214 ~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
++++.+|| +|+||++||+|||+++|+++
T Consensus 293 gd~~~~GK-~g~Dl~egK~T~p~i~al~~ 320 (395)
T 3mav_A 293 GDSTKTGK-VGSDIQNNKLTWPLIKTFEL 320 (395)
T ss_dssp ---------CCCTTTTTCCCHHHHHHHHH
T ss_pred CCHhhhcc-cccHHhcCCchHHHHHHHHh
Confidence 99999999 59999999999999999975
No 35
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=3.3e-58 Score=414.83 Aligned_cols=226 Identities=19% Similarity=0.153 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026139 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (243)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s 86 (243)
+.+.++++|.+ .| |||+||.+++++++++|++.+.. .+ ..+...+.+..+|+++|+||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~~-----~~-~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTC-LG--GKYFRGMTVVNVAEGFLAVTQHD-----EA-TKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHHTTSCCC-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhc-CC--cccHHHHHHHHHHHHhCCCcCCC-----hh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 57888889987 48 99999999999999997642110 00 001123344458899999999999999999999
Q ss_pred CCCCCCCchhhhhch--HHHHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHhHHhhccc----------
Q 026139 87 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 149 (243)
Q Consensus 87 ~~RRg~pt~~~~~G~--~~Ail~Gd~ll~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~---------- 149 (243)
++|||+||+|.+||+ +.||++||+|+++++..+++. .+.++++.+++++.+++.||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999998874 457899999999999999999999886
Q ss_pred -C--CC---CCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCC
Q 026139 150 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 221 (243)
Q Consensus 150 -~--~~---~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk 221 (243)
. +. ..++++|++|+++|||+| |++||++|++++| ++++..+.+++||.++|++|||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 2 22 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred CchhHhhcccchHHHHHHhhc
Q 026139 222 GSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 222 ~~~~Dl~~gk~T~p~~~al~~ 242 (243)
.|+||++||+|||+++++++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~ 284 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGK 284 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTT
T ss_pred -ChhhHhcCCchHHHHHHHHh
Confidence 89999999999999999975
No 36
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.2e-58 Score=404.33 Aligned_cols=209 Identities=29% Similarity=0.417 Sum_probs=182.9
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~ 85 (243)
+|.+.++++|++..| |||+||.|++++++++|++.+ ++..+|+++|+||+||||||||||+
T Consensus 27 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~avEliH~asLIHDDi~D~ 87 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAVEMMHSASLIHDDLLDQ 87 (295)
T ss_dssp SHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCcCcCC
Confidence 378999999999988 999999999999999987542 3578999999999999999999999
Q ss_pred CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhh
Q 026139 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYY 165 (243)
Q Consensus 86 s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~ 165 (243)
|++|||+||+|.+||++.|||+||+|+++|++.+++. +.++++.+++++..++.||.+|+.+... .+++++|++++++
T Consensus 88 s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~t~~~y~~~i~~ 165 (295)
T 3ipi_A 88 GLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLEDE-SFGENDYFKCIYK 165 (295)
T ss_dssp HTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHH
T ss_pred CCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHccCC-CCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999876 4689999999999999999999998765 3788999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHHHhh
Q 026139 166 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFIASE 241 (243)
Q Consensus 166 KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~al~ 241 (243)
|||+||++||++|++++|++++..+.+++||+++|++|||+||++|+++++. | .|+.+||+|||++++++
T Consensus 166 KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--g----kd~~~gk~Tlp~l~al~ 235 (295)
T 3ipi_A 166 KTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--G----KESKFTSETLPHIYMKS 235 (295)
T ss_dssp HTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--C----CCcccCcccHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998752 4 46789999999999954
No 37
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=4.4e-57 Score=410.21 Aligned_cols=221 Identities=21% Similarity=0.210 Sum_probs=188.1
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026139 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (243)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s 86 (243)
+.+.++++|.. .| |||+||+|++++++++|++... .+..+++..+|+|+||||++|||||||||+|
T Consensus 66 ~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~~-----------~~~~~~a~~lA~aiEliH~asLIHDDImD~s 131 (395)
T 2ihi_A 66 KYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCCC-----------hhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 46778899988 68 9999999999999999864221 2335678899999999999999999999999
Q ss_pred CCCCCCCchhhhhchHH--HHHHHHHHHHHHHHHHHcC-----CcHHHHHHHHHHHHHHHHHhHHhhc-c----------
Q 026139 87 DTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMT-T---------- 148 (243)
Q Consensus 87 ~~RRg~pt~~~~~G~~~--Ail~Gd~ll~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~-~---------- 148 (243)
.+|||+||||++||++. ||+.||+|++.++..+++. ...++++.+++++..++.||.+|+. |
T Consensus 132 ~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 2ihi_A 132 EMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp SEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSC
T ss_pred CCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccc
Confidence 99999999999999998 9999999999999888753 1368999999999999999999992 2
Q ss_pred ----------cCC---CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHhHHHhhhcc
Q 026139 149 ----------SSD---QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDF 212 (243)
Q Consensus 149 ----------~~~---~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~~D~ 212 (243)
... ..+++++|++|+++|||+| |.+||++|++++|++++. .+.+++||.++|++|||+||++|+
T Consensus 212 ~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~ 291 (395)
T 2ihi_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1578999999999999999 999999999999998887 899999999999999999999999
Q ss_pred cCCccccCCCchhHhhcccchHHHHHHhhc
Q 026139 213 TGTSASLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 213 ~~~~~~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
+++++.+|| .|+||++||+|||+++++++
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~l~al~~ 320 (395)
T 2ihi_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFEL 320 (395)
T ss_dssp CC----------CTTTTTCCCHHHHHHHHH
T ss_pred cCCHHHhCC-CcchhhcCCchHHHHHHHHh
Confidence 999999999 99999999999999999975
No 38
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=6.6e-58 Score=413.19 Aligned_cols=214 Identities=20% Similarity=0.178 Sum_probs=191.1
Q ss_pred hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 026139 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (243)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s~ 87 (243)
.+.++++|.+. | |||+||++++++++++++.... ..+.++.+|||||+||+||||||||||+|.
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 47889999985 8 9999999999999999875432 134678899999999999999999999999
Q ss_pred CCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHHhHHhhcccC--CCCCCHHH
Q 026139 88 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 158 (243)
Q Consensus 88 ~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-------~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~~~~~ 158 (243)
+|||+||+|++||++.|||+||+|++.|++.+.+... .++++.+++++..++.||.+|+.+.. ....+.++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999998877643 36889999999999999999997654 33557889
Q ss_pred HHHHHhhhhHHH-HHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHH
Q 026139 159 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSL 235 (243)
Q Consensus 159 y~~~~~~KTa~l-~~~~~~~ga~la~--~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p 235 (243)
|++|+++|||+| |.+|+.+|++++| ++++..+.+++||.++|+||||+||++|+++ ||+.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 8999999999998 5667778899999999999999999999975 8899999999999999
Q ss_pred HHHHhhc
Q 026139 236 LFIASEI 242 (243)
Q Consensus 236 ~~~al~~ 242 (243)
+++|+++
T Consensus 278 ~i~al~~ 284 (368)
T 2q58_A 278 LQKSFEI 284 (368)
T ss_dssp HHSSTTT
T ss_pred HHHHHHh
Confidence 9999985
No 39
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1.6e-57 Score=408.80 Aligned_cols=215 Identities=20% Similarity=0.167 Sum_probs=191.9
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCCC
Q 026139 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (243)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~s 86 (243)
+.+.++.+|.. .| |||+||++++++++++|+..++ ..+++..+|+++|+||++|||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~~-------------~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCcc-------------cHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 66778888887 68 9999999999999999754321 23568899999999999999999999999
Q ss_pred CCCCCCCchhhhhchHHHHHHHHHHH---HHHHHHHHcC-C---cHHHHHHHHHHHHHHHHHhHHhhcccCCC-CCCH-H
Q 026139 87 DTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-D 157 (243)
Q Consensus 87 ~~RRg~pt~~~~~G~~~Ail~Gd~ll---~~a~~~l~~~-~---~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~-~ 157 (243)
++|||+||+|.+||+..|||+||+|+ +++++.+++. . ..++++.+++++..++.||.+|+.+.... .++. +
T Consensus 122 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 201 (368)
T 2her_A 122 KFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp CEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHH
Confidence 99999999999999999999999999 8888777653 2 34789999999999999999999987643 3444 8
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchH
Q 026139 158 YYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLS 234 (243)
Q Consensus 158 ~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~--~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~ 234 (243)
+|++|+++|||+| |++||++|++++|++++. .+.+++||.++|++|||+||++|++ .+|| .|+||++||+||
T Consensus 202 ~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~ 276 (368)
T 2her_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccH
Confidence 9999999999999 999999999999998887 8899999999999999999999999 6899 899999999999
Q ss_pred HHHHHhhc
Q 026139 235 LLFIASEI 242 (243)
Q Consensus 235 p~~~al~~ 242 (243)
|+++++++
T Consensus 277 pvi~al~~ 284 (368)
T 2her_A 277 PLQKSFEI 284 (368)
T ss_dssp HHHSSTTT
T ss_pred HHHHHHHh
Confidence 99999975
No 40
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=2.1e-56 Score=405.62 Aligned_cols=228 Identities=20% Similarity=0.195 Sum_probs=191.1
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHH----HHHHHHHHHHHHHhhc
Q 026139 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA----EITEMIHVASLLHDDV 82 (243)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA----~aiEliH~asLIhDDI 82 (243)
+.|.++++|.+ .| |||+||+|++++++++|+..+.. +..+.+ ....+.++++| ||+||||++|||||||
T Consensus 56 ~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~~~~~---~~~~~~~~~~A~~~g~avEliH~asLIHDDI 128 (390)
T 3dyh_A 56 RYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NGEEDD---GARRKRVLHDACVCGWMIEFLQAHYLVEDDI 128 (390)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------C---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-cccccc---cCCHHHHHHHHHhhhhHHHHHHHHHHHHcCC
Confidence 47899999999 79 99999999999999997511000 000000 00112344444 4899999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHH--HHHHHcC-Cc----HHHHHHHHHHHHHHHHHhHHhhccc------
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-KN----TEVVTLLATVVEHLVTGETMQMTTS------ 149 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a--~~~l~~~-~~----~~~~~~~~~~~~~~~~Gq~~d~~~~------ 149 (243)
||+|.+|||+||+|..||++.||++||+++..+ ++.+++. .+ .++++.+++++..++.||++|+.+.
T Consensus 129 mD~s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~ 208 (390)
T 3dyh_A 129 MDNSVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKL 208 (390)
T ss_dssp HHTCCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGC
T ss_pred cCCCCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999999999999999999999755 5666652 11 4789999999999999999999872
Q ss_pred ----CC------CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHHHHhHHHhhhcccCCcc
Q 026139 150 ----SD------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSA 217 (243)
Q Consensus 150 ----~~------~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~~~~~~-~~~l~~~g~~lG~afQi~DD~~D~~~~~~ 217 (243)
.. ...++++|++|+++|||+| |++||++|++++|++++. .+.+++||.++|++|||+||++|++++++
T Consensus 209 d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~ 288 (390)
T 3dyh_A 209 DPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPE 288 (390)
T ss_dssp CTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred ccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 11 2579999999999999999 999999999999988775 78899999999999999999999999999
Q ss_pred ccCCCchhHhhcccchHHHHHHhhc
Q 026139 218 SLGKGSLSDIRHVIYLSLLFIASEI 242 (243)
Q Consensus 218 ~~gk~~~~Dl~~gk~T~p~~~al~~ 242 (243)
.+|| .|+||++||+|||+++++++
T Consensus 289 ~~GK-~g~Dl~egK~T~pvi~al~~ 312 (390)
T 3dyh_A 289 RLGK-VGTDIQDAKCSWLAVTFLAK 312 (390)
T ss_dssp HHSS-CCCTTTTTCCCHHHHHHHHH
T ss_pred HhCC-CcchhhcCCccHHHHHHHHh
Confidence 9999 99999999999999999975
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=9.6e-56 Score=386.79 Aligned_cols=197 Identities=25% Similarity=0.319 Sum_probs=183.2
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI~D~ 85 (243)
++.+.++++|++. | |||+||.+++++++++|++. +.+..+|+++|+||++|||||||||+
T Consensus 35 ~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDi~D~ 94 (289)
T 2azj_A 35 DWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI-----------------KDSYGGALAIEILHSASLALCDIVDL 94 (289)
T ss_dssp CTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5679999999998 9 99999999999999998642 13578999999999999999999999
Q ss_pred CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHh
Q 026139 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTY 164 (243)
Q Consensus 86 s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l-~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~ 164 (243)
|++|||+||+|.+||++.|||+||+|+++|++.+ ++.+ +++++.+++++..++.||++|+.+ +++|+++++
T Consensus 95 s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-------~~~y~~~i~ 166 (289)
T 2azj_A 95 DATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-------NSDYIRTIE 166 (289)
T ss_dssp CCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT-------TSCHHHHHH
T ss_pred CCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHHH
Confidence 9999999999999999999999999999999999 8765 479999999999999999999975 567999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcccchHHHHH
Q 026139 165 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLFI 238 (243)
Q Consensus 165 ~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk~T~p~~~ 238 (243)
+|||+||++||++|++++ ++++..+.+++||.++|++|||+||++|++++ ||+ |+++||.|||+++
T Consensus 167 ~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~ 232 (289)
T 2azj_A 167 LKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY 232 (289)
T ss_dssp HHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH
Confidence 999999999999999999 89888999999999999999999999999986 454 8999999999999
No 42
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.6e-54 Score=376.74 Aligned_cols=201 Identities=30% Similarity=0.415 Sum_probs=174.7
Q ss_pred CCCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 026139 2 VVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (243)
Q Consensus 2 ~~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhD 80 (243)
+.+. +|.+.++++|++..| |||+||.+++++++++|+... ..+++..+|+++|+||+||||||
T Consensus 25 l~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~~--------------~~~~~~~~A~aiEliH~aSLIHD 88 (285)
T 4fp4_A 25 GEELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRSI--------------MDPRILEAAAIVELLHVVSLLQD 88 (285)
T ss_dssp TTTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGGG--------------GCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCCC--------------ChHHHHHHHHHHHHHHHHHHHHC
Confidence 3445 789999999999988 999999999999999986211 12467899999999999999999
Q ss_pred hccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHH
Q 026139 81 DVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 160 (243)
Q Consensus 81 DI~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~ 160 (243)
||||+|++|||+||+|.+||++.|||+||+|+++|++.+++.++ ++++.+++++..++.||.+|+.+..+
T Consensus 89 DImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~--------- 158 (285)
T 4fp4_A 89 DVMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERD--------- 158 (285)
T ss_dssp HHHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHH---------
T ss_pred CCCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhcccc---------
Confidence 99999999999999999999999999999999999999998865 99999999999999999999987532
Q ss_pred HHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhcc
Q 026139 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHV 230 (243)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~g 230 (243)
.|+++|||+||++||++|+++++++ +..+.+++||.++|++|||+||++|++++++ .||+.++||+++
T Consensus 159 ~~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 159 KAAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred chhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 1999999999999999999999998 8889999999999999999999999999864 688899999998
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=6.2e-54 Score=376.44 Aligned_cols=204 Identities=31% Similarity=0.403 Sum_probs=178.3
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc--c
Q 026139 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (243)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI--~ 83 (243)
++.+.++++|++..| |||+||.|++++++++|++. +.++.+|+++|+||++||||||| |
T Consensus 37 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDip~m 97 (293)
T 2j1p_A 37 PLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE-----------------SLAMPAACAVEMIHTMSLIHDDLPCM 97 (293)
T ss_dssp SHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 467999999999888 99999999999999997531 35688999999999999999998 9
Q ss_pred CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC-----cHHHHH---HHHHHH--HHHHHHhHHhhcccCC--
Q 026139 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVT---LLATVV--EHLVTGETMQMTTSSD-- 151 (243)
Q Consensus 84 D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~-----~~~~~~---~~~~~~--~~~~~Gq~~d~~~~~~-- 151 (243)
|+|++|||+||+|.+||++.|||+||+|+++|++.+++.. +..+++ .+++++ ..++.||.+|+.+...
T Consensus 98 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~ 177 (293)
T 2j1p_A 98 DNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL 177 (293)
T ss_dssp TCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCH
T ss_pred cCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999988642 334444 445554 5799999999988654
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCCchhHhhccc
Q 026139 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVI 231 (243)
Q Consensus 152 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~~~~Dl~~gk 231 (243)
...++++|.+|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||++|+++++ |
T Consensus 178 ~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K 243 (293)
T 2j1p_A 178 NNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------K 243 (293)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------c
Confidence 35678899999999999999999999999999999999999999999999999999999999874 9
Q ss_pred chHHHHHHhhc
Q 026139 232 YLSLLFIASEI 242 (243)
Q Consensus 232 ~T~p~~~al~~ 242 (243)
.|+|+++++++
T Consensus 244 ~T~p~l~gle~ 254 (293)
T 2j1p_A 244 LTYPKLMGLEK 254 (293)
T ss_dssp CCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 99999999874
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=2.1e-49 Score=344.41 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=165.4
Q ss_pred CCch-hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 4 ~~~~-~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
+..| .|.++++|++..| |||+||.|++++++++|++.+ ++..+|+++|+||++|||||||
T Consensus 22 ~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~aSLIHDDI 82 (274)
T 3kra_B 22 IRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDRS-----------------QAMAAAAAIHLVHAAAYVHEHL 82 (274)
T ss_dssp CCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GGHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHcCC
Confidence 3445 4999999999888 999999999999999987532 4678999999999999999999
Q ss_pred c-CCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcH-------HHHHHH---HHHH--HHHHHHhHHhhccc
Q 026139 83 L-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTLL---ATVV--EHLVTGETMQMTTS 149 (243)
Q Consensus 83 ~-D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~-------~~~~~~---~~~~--~~~~~Gq~~d~~~~ 149 (243)
+ |+++.|||+||+|.+||++.|||+||+|+++|++.+++..++ .+++.+ ++++ ..++.||.+|+.+.
T Consensus 83 ~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~ 162 (274)
T 3kra_B 83 PLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIV 162 (274)
T ss_dssp CCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCC
T ss_pred cccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhcc
Confidence 8 666689999999999999999999999999999999886542 344444 4444 67899999999987
Q ss_pred CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhh
Q 026139 150 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 209 (243)
Q Consensus 150 ~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~ 209 (243)
.+ .+++++|++|+++|||+||++||++|++++|++++..+.+++||.++|++|||+||.
T Consensus 163 ~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 163 DG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 689999999999999999999999999999999999999999999999999999998
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=5.1e-49 Score=341.96 Aligned_cols=185 Identities=12% Similarity=0.150 Sum_probs=160.7
Q ss_pred CCch-hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhHhhHhHHHHHHHHHHHHHHHHHHHHHhhc
Q 026139 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (243)
Q Consensus 4 ~~~~-~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~aiEliH~asLIhDDI 82 (243)
+..| .|.++++|++..| |||+||.|++++++++|++.+ +++.+|+++|+||++|||||||
T Consensus 27 ~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~aSLIHDDI 87 (273)
T 3qkc_B 27 IRAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDRS-----------------DAMAAAAAVHLMHVAAYTHENL 87 (273)
T ss_dssp CCCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCGG-----------------GTHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHcCc
Confidence 3444 5999999999888 999999999999999987532 4678999999999999999999
Q ss_pred cCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc------HHHHHHHH---HHH--HHHHHHhHHhhcccCC
Q 026139 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLA---TVV--EHLVTGETMQMTTSSD 151 (243)
Q Consensus 83 ~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~------~~~~~~~~---~~~--~~~~~Gq~~d~~~~~~ 151 (243)
+|+|. |||+||+|.+||++.|||+||+|+++|++.+++..+ ..+++.+. +++ ..++.||.+|+.+..
T Consensus 88 ~D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~- 165 (273)
T 3qkc_B 88 PLTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ- 165 (273)
T ss_dssp CBTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS-
T ss_pred ccCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-
Confidence 99998 999999999999999999999999999999987542 34555544 444 678999999998843
Q ss_pred CCCCHHHHHH-HHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 026139 152 QRCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (243)
Q Consensus 152 ~~~~~~~y~~-~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D 211 (243)
..+. +|++ |+++|||+||++||++|++++|++++..+.+++||.++|++|||+||+.+
T Consensus 166 -~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~~ 224 (273)
T 3qkc_B 166 -LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNRS 224 (273)
T ss_dssp -SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred -CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455 5554 66999999999999999999999999999999999999999999999985
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.18 E-value=0.24 Score=42.52 Aligned_cols=70 Identities=9% Similarity=0.029 Sum_probs=47.5
Q ss_pred HHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhccc
Q 026139 135 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 213 (243)
Q Consensus 135 ~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~ 213 (243)
+.++..|..+|+... ...|.+++..-+++-.|....+.+. +++..+++ ...++.++|.++|+.|=+.|+-
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv~ 175 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDID 175 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhch
Confidence 467788888888654 2457887777666655555544443 34444544 3456789999999999888863
No 47
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=95.58 E-value=0.32 Score=42.77 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLI 206 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~ 206 (243)
+.+.+.+.+..+..|-..|+. ....|.+++..-+++-.|....+.+.+-..-...++. .......+.++|.++|+.
T Consensus 112 ~~~~i~~~~~~m~~gm~~dl~---~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQlt 187 (343)
T 3vj8_A 112 YQTVIADICRRMGIGMAEFLD---KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKT 187 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG---CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHH
Confidence 334455666677788777775 2356888888888887777777777665443222332 334567899999999999
Q ss_pred Hhhhcc
Q 026139 207 DDVLDF 212 (243)
Q Consensus 207 DD~~D~ 212 (243)
|=+.|+
T Consensus 188 NilRDv 193 (343)
T 3vj8_A 188 NIIRDY 193 (343)
T ss_dssp HHHHTH
T ss_pred HHHHHh
Confidence 887776
No 48
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=93.94 E-value=0.78 Score=40.65 Aligned_cols=89 Identities=7% Similarity=-0.061 Sum_probs=60.7
Q ss_pred cHHHHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHH-HHHHHHc-CCCHHHH--HHHHHHHHH
Q 026139 124 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSC-KAIALLA-GQTAEVA--ILAFDYGKN 198 (243)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~-~~ga~la-~~~~~~~--~~l~~~g~~ 198 (243)
.+.....+.+.+.+++.+-..+..+.. ...++.++|+++-+.-+|..+.+.. ..+ ++ ..+++.. ..+.++-+.
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~--~g~~l~~~~~~~p~~~~l~~~ 252 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPS--SGCELPDAVRKHPAYRRAALL 252 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHH--HTCCCCHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHH--cCCCCCHHHHhChHHHHHHHH
Confidence 456778888889999999888877653 3368999999995555554433222 121 22 2344432 246667888
Q ss_pred HHHHHhHHHhhhcccC
Q 026139 199 LGLAYQLIDDVLDFTG 214 (243)
Q Consensus 199 lG~afQi~DD~~D~~~ 214 (243)
.+...-+.||+..|..
T Consensus 253 ~~~i~rL~NDi~S~~k 268 (382)
T 3kb9_A 253 SQEFAAWYNDLCSLPK 268 (382)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999853
No 49
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=91.84 E-value=3.9 Score=35.04 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=59.4
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHHhHHhhcccCC-CCC-CHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHH--HHH
Q 026139 119 LASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRC-SMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAI--LAF 193 (243)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~-~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~--~l~ 193 (243)
+.....+.....+.+.+.+++.+-..+..+... ..+ +.++|+++-+.-.|..+.+....- .++. .+++..+ .+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~-~~g~~l~~~~~~~p~~~ 205 (337)
T 1ps1_A 127 TCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAER-AGRFEVPHRVFDSAVMS 205 (337)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHH-HHTCCCCHHHHTSHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHH-HcCCCCCHHHHhChHHH
Confidence 333335667788888899999998888776543 357 899999885555544433222211 1122 3343322 456
Q ss_pred HHHHHHHHHHhHHHhhhcccC
Q 026139 194 DYGKNLGLAYQLIDDVLDFTG 214 (243)
Q Consensus 194 ~~g~~lG~afQi~DD~~D~~~ 214 (243)
++-+..+...-+.||+..|..
T Consensus 206 ~l~~~~~~i~rL~NDl~S~~k 226 (337)
T 1ps1_A 206 AMLQIAVDVNLLLNDIASLEK 226 (337)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHH
Confidence 777888999999999999853
No 50
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=90.87 E-value=1.2 Score=37.84 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=56.7
Q ss_pred HHHHHHHHhHHhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhccc
Q 026139 134 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 213 (243)
Q Consensus 134 ~~~~~~~Gq~~d~~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~ 213 (243)
.+.++..|..+|+... ...|.+++..-+++-.|....+.+.+- +..+. +.....+.++|.++|+.|=+.|+
T Consensus 109 ~~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~---~~~~~~A~~lG~AlQltNilRDv- 179 (293)
T 3acx_A 109 SFYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPIL---SDHET---HQTYDVARRLGESLQLINILRDV- 179 (293)
T ss_dssp HHHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCC---HHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCc---HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3567788888887642 345888888777777777666655542 33331 23567889999999999977776
Q ss_pred CCccccCCCchhHhhcccchHHH
Q 026139 214 GTSASLGKGSLSDIRHVIYLSLL 236 (243)
Q Consensus 214 ~~~~~~gk~~~~Dl~~gk~T~p~ 236 (243)
+.|+..|++-+|.
T Consensus 180 ----------~eD~~~gR~YLP~ 192 (293)
T 3acx_A 180 ----------GEDFENERIYFSK 192 (293)
T ss_dssp ----------HHHHHTTCCCSCH
T ss_pred ----------HHHHhCCcEEeCH
Confidence 4555666665554
No 51
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=87.79 E-value=0.7 Score=35.06 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 026139 71 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 146 (243)
Q Consensus 71 liH~asLIhDDI~D~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~ 146 (243)
.|-++--+.|||-++- ...-||+|||+-+..+.+|+.......+..+++++.++.+....-.
T Consensus 53 aIDTsmrv~d~i~~n~--------------K~riVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 53 AIDTSMRMQDFINEDN--------------KDSFVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHGGGCCTTT--------------HHHHHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccHHHhhcccccCC--------------ccceEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3667777777772221 1225699999999999999998889999999999998887665443
No 52
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=70.24 E-value=28 Score=29.89 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.|+-|.|||.| .++.|.|++|+=..+|...|--...-+..+|...|..++
T Consensus 206 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 206 KLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455566777889999999977 356788999999999999888888888889988888765
No 53
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=69.91 E-value=33 Score=29.52 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.|+-|.|||.| .++.|.|++|+=..+|...|--...-+..+|...|..++
T Consensus 235 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 306 (324)
T 3uca_A 235 KLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIK 306 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455556677889999999976 246788889998889998888888888888988888775
No 54
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=68.05 E-value=13 Score=33.40 Aligned_cols=96 Identities=8% Similarity=-0.069 Sum_probs=61.5
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHH--HHH
Q 026139 118 ALASLKNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAI--LAF 193 (243)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~--~l~ 193 (243)
.+.+.......+.+.+.+.+++.+-+.+..|.. ...++.++|+++ +..||....+.+ +...++. .+++..+ .+.
T Consensus 247 ~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l-~e~~~g~~lp~~v~~~p~~~ 324 (433)
T 3v1v_A 247 YFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI-TDTVGGYELPADLHARPDMQ 324 (433)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG-HHHHHTCCCCHHHHTSHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH-HHHHcCCCCCHHHHhCchHH
Confidence 333333556677788888888888888877643 346899999997 445654322211 1111222 3344332 566
Q ss_pred HHHHHHHHHHhHHHhhhcccCC
Q 026139 194 DYGKNLGLAYQLIDDVLDFTGT 215 (243)
Q Consensus 194 ~~g~~lG~afQi~DD~~D~~~~ 215 (243)
++-+..+...-+.||+..|..+
T Consensus 325 ~L~~~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 325 RVIALAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHH
Confidence 7788889999999999999643
No 55
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=68.01 E-value=16 Score=31.15 Aligned_cols=78 Identities=27% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHH
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 130 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~ 130 (243)
.+...-+.|=.|+-|.|||.| .++.|.|++|+=..+|...|--...-+..+|...|..++. .+.+..
T Consensus 207 ~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 286 (304)
T 3lsn_A 207 ALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPLRE 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 355556677788999999977 4688999999999999999988888899999988888763 333333
Q ss_pred HHHH-HHHHHHH
Q 026139 131 LATV-VEHLVTG 141 (243)
Q Consensus 131 ~~~~-~~~~~~G 141 (243)
+++. +.+..+|
T Consensus 287 l~~~~~~R~~~~ 298 (304)
T 3lsn_A 287 LARYIVERRSEG 298 (304)
T ss_dssp HHHHHHC-----
T ss_pred HHHHHHHhcccc
Confidence 3333 3344444
No 56
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=64.07 E-value=40 Score=29.00 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~ 124 (243)
.+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++.
T Consensus 213 ~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 213 RLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 455556677788999999976 2467889999999999999988888888899888887764
No 57
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=62.60 E-value=30 Score=29.44 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.++-|.||+.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 213 ~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 213 HLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455667788999999976 245678889998889998888888888899988888775
No 58
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=62.39 E-value=65 Score=26.53 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCC
Q 026139 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (243)
Q Consensus 152 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~ 215 (243)
..++.++|+++-+.-+|..+.+....-+.=-..+++..+.+.++-+..+...-+.||+..|..+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3689999999855555544333222211212256677777888999999999999999999655
No 59
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=61.16 E-value=74 Score=29.54 Aligned_cols=90 Identities=10% Similarity=0.010 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHH
Q 026139 125 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNL 199 (243)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l---~~~g~~l 199 (243)
..++..+.+.+.+++.+-..+..|.. ...||.++|++...--+|..+...... ..++. .+.+..+.+ .++-+..
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~-~~mg~~lt~e~~e~~~~~p~i~~~~ 443 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF-VGMGDIVTPETFKWAASDPKIIQAS 443 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHH-HTSCTTSCHHHHHHHHTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHH-HhcCCCCCHHHHHhccccHHHHHHH
Confidence 35777888888999999888888754 347899999999666555543222211 11122 455555443 3677889
Q ss_pred HHHHhHHHhhhcccCC
Q 026139 200 GLAYQLIDDVLDFTGT 215 (243)
Q Consensus 200 G~afQi~DD~~D~~~~ 215 (243)
+...-+.||+..+..+
T Consensus 444 ~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 444 TIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHhcccchhhhh
Confidence 9999999999998654
No 60
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=60.06 E-value=46 Score=28.31 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhccCC------------CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcC
Q 026139 64 CIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 122 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~ 122 (243)
.+...-+.+=.++-|.|||.|- ++.+.|++|+=..+|...|--.-.-+...|...|..+
T Consensus 210 ~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 210 LLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555566777889999999773 4567788888888888877777777777777666654
No 61
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=59.25 E-value=28 Score=29.82 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHH
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 130 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~ 130 (243)
.+...-+.|=.|+-|.|||.| .++.|.|++|+=..+|...|--...-+...|...|..++. .+.+..
T Consensus 214 ~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 293 (313)
T 3lom_A 214 ALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAALIE 293 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 355556677788999999976 2467889999999999999988888888888888877653 334444
Q ss_pred HHHH
Q 026139 131 LATV 134 (243)
Q Consensus 131 ~~~~ 134 (243)
+++.
T Consensus 294 la~~ 297 (313)
T 3lom_A 294 LTKQ 297 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 62
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=55.82 E-value=1.3e+02 Score=27.88 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHc-C-CCHHHHHH---HHHHHHH
Q 026139 125 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAIL---AFDYGKN 198 (243)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la-~-~~~~~~~~---l~~~g~~ 198 (243)
..++..+.+.+.+++.+-..+..|.. ...||.++|++...--+|.....+.. .++ . .+.+..+- .-++-+.
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 35677778888889999888888754 34789999999976666554322222 232 2 45554443 2357788
Q ss_pred HHHHHhHHHhhhcccC
Q 026139 199 LGLAYQLIDDVLDFTG 214 (243)
Q Consensus 199 lG~afQi~DD~~D~~~ 214 (243)
.+...-+.||+..+..
T Consensus 438 ~~~I~RL~NDI~S~k~ 453 (550)
T 3m00_A 438 SVIICRVIDDTATYEV 453 (550)
T ss_dssp HHHHHHHHHHHHSHHH
T ss_pred HhhhheeeccchhHHH
Confidence 8999999999999853
No 63
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=55.67 E-value=82 Score=29.23 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILA---FDYGKNLGL 201 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG~ 201 (243)
++..+.+++.+++.+-+.+..|.. ...||.++|+++..--+|..+.+.... ..++. .+.+..+-+ -++-+..+.
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~-~~mg~~lt~e~~e~~~~~p~i~~~~~~ 443 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAY-FAVVQNIKKEEIENLQKYHDIISRPSH 443 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHH-HHHCSSCCHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHH-HhcCCCCCHHHHHhcccchHHHHHHHH
Confidence 456667778888888888887754 347899999999666555443222211 11233 455544432 356788889
Q ss_pred HHhHHHhhhcccC
Q 026139 202 AYQLIDDVLDFTG 214 (243)
Q Consensus 202 afQi~DD~~D~~~ 214 (243)
..-+.||+..+..
T Consensus 444 i~RL~NDi~S~~~ 456 (555)
T 3n0f_A 444 IFRLCNDLASASA 456 (555)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHhccchhhhh
Confidence 9999999999853
No 64
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=54.95 E-value=91 Score=25.95 Aligned_cols=63 Identities=5% Similarity=0.056 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccC
Q 026139 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 214 (243)
Q Consensus 152 ~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~ 214 (243)
..++.++|+++-+.-+|..+.+....-+.=-..+++..+...++-+..+...-+.||+..|..
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~k 226 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEK 226 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence 368999999886666554433322221111125667667788899999999999999999954
No 65
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=54.93 E-value=38 Score=28.72 Aligned_cols=60 Identities=15% Similarity=0.160 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.++-|.|||.| .++.+.|++|+=..+|...|--...-+..+|...|..++
T Consensus 202 ~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 202 HLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344556667788899999977 467888999998888888887777888888888887764
No 66
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=54.39 E-value=86 Score=27.44 Aligned_cols=132 Identities=13% Similarity=0.002 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCchhhhh--chH--HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhHHhh
Q 026139 71 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNK--LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 146 (243)
Q Consensus 71 liH~asLIhDDI~D~s~~RRg~pt~~~~~--G~~--~Ail~Gd~ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~ 146 (243)
...++..+.||+.|++.. ....++..+ |.. ..++. .+......+.+.-.+.....|.+.+.+...|..++.
T Consensus 91 d~~~~~F~lDD~~d~~~~--~l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYP--TMVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHH--HHTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHH--HHHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788889999987531 112222222 110 01111 122222334444466777788888888888988886
Q ss_pred cccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CC------HHHHHHHHHHHHHHHHHHhHHHhhhcccCC
Q 026139 147 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (243)
Q Consensus 147 ~~~~~~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~------~~~~~~l~~~g~~lG~afQi~DD~~D~~~~ 215 (243)
.. ....++.+.|..+.+.+||..- ++ .+.++.. .. +.....+..+.. ..=..||++.|..+
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~E--~~-~~~~~P~~~~~e~~~~~~~~~~i~am~~----~i~~~NDIlSf~KE 233 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLGH--CV-GASLWPKEQFNERSLFLEITSAIAQMEN----WMVWVNDLMSFYKE 233 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCHH--HH-HHTTCCTTTCCTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hc-cCCCCCHHHHHHHHHhhccHHH--HH-HHhhccccccchhhcchhHHHHHHHHHH----HHHhhhhhhccchh
Confidence 54 3345677889998899998631 11 1111211 11 223344444443 44557899888643
No 67
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=53.61 E-value=37 Score=28.80 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhhccCC------------CCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCCc-HHHHHHH
Q 026139 65 IAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLL 131 (243)
Q Consensus 65 lA~aiEliH~asLIhDDI~D~------------s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~~-~~~~~~~ 131 (243)
+...-+.|=.++-|.|||.|- ++.|.|++|+=..+|...|--...-++..|...|..++. .+.+..+
T Consensus 201 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~L~~l 280 (297)
T 3m0g_A 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEAASTLRAC 280 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 344455667788899999873 467888999999999988888888888888888877653 3334333
Q ss_pred HH
Q 026139 132 AT 133 (243)
Q Consensus 132 ~~ 133 (243)
++
T Consensus 281 ~~ 282 (297)
T 3m0g_A 281 AR 282 (297)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 68
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=52.83 E-value=45 Score=28.82 Aligned_cols=60 Identities=28% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHcCC
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~~~ 123 (243)
.+...-+.+=.++-|.|||.| .++.+.|++|+=..+|...+--..+-+..+|...|..++
T Consensus 246 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 246 RLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455556667788899999977 245778888988888888777777777888877776654
No 69
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=50.26 E-value=28 Score=30.02 Aligned_cols=31 Identities=26% Similarity=0.112 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHHhhhcc
Q 026139 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212 (243)
Q Consensus 182 a~~~~~~~~~l~~~g~~lG~afQi~DD~~D~ 212 (243)
.|.+++....+...-+.+=.++-|.||+.|=
T Consensus 62 ~g~~~~~~~~~A~aiEliH~asLiHDDI~D~ 92 (334)
T 3rmg_A 62 YGAVTPATLHAAVSLELLHTASLVHDDVVDE 92 (334)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHcCccCC
Confidence 3444444555666778888999999999773
No 70
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=46.96 E-value=1.7e+02 Score=26.82 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLGL 201 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~ 201 (243)
++..+.+.+..++.+-..+..|.... .||.++|+++...-+|...-+.... ..++. .+.+..+- -.++-+..++
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~-~~~g~~~t~e~~e~~~~~p~i~~~~~~ 434 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIF-FRVTDSFTKETVDSLYKYHDLVRWSSF 434 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHH-HHHSSCCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHH-HHcCCCCCHHHHHHhcccHHHHHHHHH
Confidence 55667777788888888887765543 6899999988654444432222211 22233 44444332 2356677788
Q ss_pred HHhHHHhhhcccC
Q 026139 202 AYQLIDDVLDFTG 214 (243)
Q Consensus 202 afQi~DD~~D~~~ 214 (243)
..-+.||+..+..
T Consensus 435 i~RL~NDi~S~~~ 447 (543)
T 2ong_A 435 VLRLADDLGTSVE 447 (543)
T ss_dssp HHHHHHHHHSSHH
T ss_pred HHHHhcccchhhh
Confidence 8889999998853
No 71
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=42.19 E-value=1e+02 Score=26.27 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC------------CCCCCCCCCchhhhhchHHHHHHHHHHHHHHHHHHHc
Q 026139 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------------~s~~RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~ 121 (243)
.+...-+.|=.|+-|.|||.| .++.+.|++|+=..+|...|--.-.-++..|...+..
T Consensus 209 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 209 AYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345556667788999999976 3577888999988888887777777777777777766
No 72
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=41.27 E-value=1.6e+02 Score=24.75 Aligned_cols=61 Identities=13% Similarity=0.177 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC------CCCCCCCCCchhhhhc--------hHHHHHHHHHHHHHHHHHHHcCCc
Q 026139 64 CIAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKLAVLAGDFLLSRACVALASLKN 124 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D------~s~~RRg~pt~~~~~G--------~~~Ail~Gd~ll~~a~~~l~~~~~ 124 (243)
.+...-+.+=.++-|.|||.| +.+.+.|++|+=..|+ ...|--...-+..+|...|..+++
T Consensus 191 ~l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 191 RFSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555667788999999977 3456788888877776 555666666667777777776654
No 73
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=38.61 E-value=29 Score=21.69 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCCCchhhhhchHHHHHHHHHHHHHH
Q 026139 90 RGIGSLNFVMGNKLAVLAGDFLLSRA 115 (243)
Q Consensus 90 Rg~pt~~~~~G~~~Ail~Gd~ll~~a 115 (243)
...|..|.+||+ +||+|-..+..+
T Consensus 4 k~~p~FHdKYGn--~~L~~Ga~FC~a 27 (56)
T 1v54_K 4 KRAPDFHDKYGN--AVLASGATFCVA 27 (56)
T ss_dssp --CCCHHHHHHH--HHHHHHHHHHHH
T ss_pred ccCcchhhhcCc--eeeecchhhhHh
Confidence 345889999988 567766555444
No 74
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=35.99 E-value=32 Score=29.76 Aligned_cols=44 Identities=25% Similarity=0.168 Sum_probs=25.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 177 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+++.+.+.+.+....+...-+.+=.+.-|.||+.|= ++.+.|||
T Consensus 63 ~~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D~--s~~RRG~p 106 (341)
T 3mzv_A 63 AAARLVGYGGPFHVHLAATVEFIHTATLLHDDVVDE--SRQRRGRP 106 (341)
T ss_dssp HHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC--------CTTSC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccCC--CCCcCCCc
Confidence 334444544444555666778888899999999763 33445555
No 75
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=35.58 E-value=50 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=26.9
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 180 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
.+.+.+++....+...-+.+=.+.-|.||+.|= ++.+.|+|
T Consensus 38 ~~~~~~~~~~~~~A~avEliH~asLiHDDi~D~--s~~RRG~p 78 (301)
T 2q80_A 38 HWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDN--SKLRRGFP 78 (301)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT--CSEETTEE
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCCCCc
Confidence 334555555556667777888889999999773 33444554
No 76
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=35.45 E-value=41 Score=28.42 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.+....+...-+.+=.+.-|.||+.| +++.+.|||
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD--~s~~RRG~P 101 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD--QHDQRRGIK 101 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT--TCSBSSSSB
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCCCC
Confidence 334445566677888889999999976 344455665
No 77
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=30.70 E-value=52 Score=27.72 Aligned_cols=42 Identities=14% Similarity=-0.013 Sum_probs=25.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 179 a~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.+.+.+++....+...-+.+=.+.=|.||+.| +++.+.|||
T Consensus 61 ~~~~g~~~~~~~~~A~avEliH~asLIHDDi~D--~s~~RRG~p 102 (289)
T 2azj_A 61 TVALGGDIKDSYGGALAIEILHSASLALCDIVD--LDATRRGDK 102 (289)
T ss_dssp HHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHT--TCCBSSSSB
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--CCCCCCCCc
Confidence 334444444344455666777788889999966 333444555
No 78
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=29.89 E-value=62 Score=27.71 Aligned_cols=44 Identities=23% Similarity=0.160 Sum_probs=28.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 177 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+++.+.+.+++....+...-+.+=.+.-|.||+.| +++.+.|||
T Consensus 49 ~~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D--~s~~RRG~p 92 (330)
T 1wmw_A 49 YSALAHGAPLEAGLEAATALELFQNWVLVHDDIED--GSEERRGRP 92 (330)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TCCEETTEE
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc--CCCCCCCCC
Confidence 33444455655555666677778888999999977 344455555
No 79
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.28 E-value=62 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=26.3
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 180 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
.+.+.+++....+...-+.+=.+.-|.||+.|= ++.+.|+|
T Consensus 53 ~~~~~~~~~~~~~A~avEliH~asLiHDDI~D~--s~~RRG~p 93 (340)
T 2e8v_A 53 RVMNLPKDQLAIVSQIVELLHNSSLLIDDIEDN--APLRRGQT 93 (340)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSEETTEE
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHhCccccC--CCCCCCCc
Confidence 334555555555666677778888999999763 33444555
No 80
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=28.74 E-value=2.7e+02 Score=23.56 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCC--CCC--------CCCCCchhhhhchHHHHHHHHHHHHHHHHHHHc
Q 026139 64 CIAEITEMIHVASLLHDDVLDD--ADT--------RRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121 (243)
Q Consensus 64 ~lA~aiEliH~asLIhDDI~D~--s~~--------RRg~pt~~~~~G~~~Ail~Gd~ll~~a~~~l~~ 121 (243)
.+...-+.|=.++-|.|||.|- ++. +.|++|+=..+|...|--.-.-++..|...|..
T Consensus 214 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 214 WLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555666777889999999762 211 778889888899888888888888888888887
No 81
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=28.24 E-value=1.8e+02 Score=28.14 Aligned_cols=86 Identities=7% Similarity=0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l-~~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG 200 (243)
++..+.+++.+++.+-..+..|.. ...||.++|++...--+|.. +...+..+ ++. .+.+..+.. .++-+..+
T Consensus 567 ~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 644 (764)
T 3p5p_A 567 MLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELVS 644 (764)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHHH
Confidence 456677777888888887777643 33689999999865555543 22222222 222 344444443 45778888
Q ss_pred HHHhHHHhhhcccC
Q 026139 201 LAYQLIDDVLDFTG 214 (243)
Q Consensus 201 ~afQi~DD~~D~~~ 214 (243)
...-+.||+..+..
T Consensus 645 ~I~RL~NDi~S~k~ 658 (764)
T 3p5p_A 645 LSWRLTNDTKTYQA 658 (764)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhhhcccchHH
Confidence 99999999999853
No 82
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=28.08 E-value=58 Score=28.44 Aligned_cols=35 Identities=26% Similarity=0.102 Sum_probs=23.5
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhc
Q 026139 177 AIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (243)
Q Consensus 177 ~ga~la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D 211 (243)
+++.+.+ .+.+....+...-+.+=.+.-|.||+.|
T Consensus 84 l~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD 119 (360)
T 3lmd_A 84 LASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD 119 (360)
T ss_dssp HHHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3344444 4444445566667788889999999977
No 83
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=28.06 E-value=59 Score=27.48 Aligned_cols=34 Identities=38% Similarity=0.355 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 187 ~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+....+...-+.+=.+.-|.||+.| +++.+.|+|
T Consensus 61 ~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 94 (299)
T 1v4e_A 61 EDAISSLAALELVHLASLLHDDVID--GARFRRGKE 94 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TCSEETTEE
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCC--CCCCCCCCC
Confidence 3344456666777788889999977 333444554
No 84
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=27.77 E-value=44 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=29.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 176 ~~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
.+++.+.|.+++....+...-+.+=.+.-|.||+.|- ++.+.|||
T Consensus 63 ll~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~--s~~RRG~p 107 (352)
T 3nf2_A 63 VLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG--DEQRRHRD 107 (352)
T ss_dssp HHHHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT--CCEETTEE
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC--CCCCCCCc
Confidence 3344444555555555666778888899999999873 33445555
No 85
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=27.58 E-value=60 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=27.2
Q ss_pred HcC-CCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 181 LAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 181 la~-~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+++ .+.+....+...-+.+=.+.-|.||+.| +++.+.|||
T Consensus 69 ~g~~~~~~~~~~~A~aiEliH~asLiHDDi~D--~s~~RRG~p 109 (334)
T 3pko_A 69 FGNAATPAQLQAGAAAIEILHVGTLIHDDVID--DSPTRRGVR 109 (334)
T ss_dssp TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--TCSEETTEE
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHhCccCC--CCCCcCCCc
Confidence 444 4666666677777888899999999977 333444544
No 86
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=26.84 E-value=1.1e+02 Score=29.69 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHcC-CCHHHHHHHH-----HHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 197 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~--~~~~~~ga~la~-~~~~~~~~l~-----~~g~ 197 (243)
++..+.+++.+++.+-..+..|.. ...||.++|++...--+|... .+.+..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 455667777888888887777643 336899999998655444422 2222221 222 3555555444 6778
Q ss_pred HHHHHHhHHHhhhcccCC
Q 026139 198 NLGLAYQLIDDVLDFTGT 215 (243)
Q Consensus 198 ~lG~afQi~DD~~D~~~~ 215 (243)
..+...-+.||+..+..+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 888999999999998654
No 87
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=26.64 E-value=1.2e+02 Score=27.94 Aligned_cols=88 Identities=18% Similarity=0.008 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHH-HHH---HHHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEV-AIL---AFDYGKNLG 200 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~-~~~---l~~~g~~lG 200 (243)
++..+.+++..++.+-..+..|... ..||.++|++....-+|....+.. .-..++. .+.+. .+. ..++-+..+
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~-~~~~~g~~lt~e~~~e~~~~~p~i~~~~~ 440 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISP-TYFTFANASHDTAVIDSLYQYHDILCLAG 440 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHH-HHTTSTTCCCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHH-HHHHcCCCCcHHHHHhhhcccHHHHHHHH
Confidence 4555667777777777777766433 368999999985544443322111 1111222 23343 222 245777888
Q ss_pred HHHhHHHhhhcccCC
Q 026139 201 LAYQLIDDVLDFTGT 215 (243)
Q Consensus 201 ~afQi~DD~~D~~~~ 215 (243)
+..-+.||+..+..+
T Consensus 441 ~i~RL~NDi~S~~~E 455 (549)
T 1n1b_A 441 IILRLPDDLGTSYFE 455 (549)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHhcccchhhhh
Confidence 999999999998654
No 88
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=26.45 E-value=37 Score=29.60 Aligned_cols=36 Identities=17% Similarity=0.035 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.+....+...-+.+=.+.-|.||+.|= ++.+.|||
T Consensus 63 ~~~~~~~~A~aiEliH~asLiHDDI~D~--s~~RRG~p 98 (358)
T 4dhd_A 63 QWRPALPAAAIVELIHNYSLIYDDIIDR--GDVRRGLP 98 (358)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHHHHTT--CCEETTEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCccccC--CCCcCCCc
Confidence 3343445566668888899999999773 33444554
No 89
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=25.02 E-value=93 Score=26.08 Aligned_cols=40 Identities=18% Similarity=0.035 Sum_probs=25.7
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHhHHHhh--hcccCCccccCCC
Q 026139 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKG 222 (243)
Q Consensus 181 la~~~~~~~~~l~~~g~~lG~afQi~DD~--~D~~~~~~~~gk~ 222 (243)
+.+.+++....+...-+.+=.+.-|.||+ .|= ++.+.|||
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D~--s~~RRG~p 101 (284)
T 2ftz_A 60 DLGVEEEXLLDVAVAVELFHTASLIHDDLPPIDN--ADFRRGXP 101 (284)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTTC--CSEETTEE
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcCC--CCCCCCCc
Confidence 33555554455666667778888999999 773 33444544
No 90
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=24.29 E-value=64 Score=21.66 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=16.1
Q ss_pred CCCchhhhhchHHHHHHHHHHHHHH
Q 026139 91 GIGSLNFVMGNKLAVLAGDFLLSRA 115 (243)
Q Consensus 91 g~pt~~~~~G~~~Ail~Gd~ll~~a 115 (243)
..|..|.+||+ +||+|-..+..+
T Consensus 29 ~~pdFHdKYGn--~~L~~Ga~FC~a 51 (80)
T 2y69_K 29 RAPDFHDKYGN--AVLASGATFCVA 51 (80)
T ss_dssp -CCCHHHHHHH--HHHHHHHHHHHH
T ss_pred CCCchhhhcCc--eeeecchhHHHh
Confidence 35889999998 567776555444
No 91
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=24.07 E-value=2e+02 Score=26.65 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccCCC-CCCHHHHHHHHhhhhHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAIL---AFDYGKNLGL 201 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~~~~~y~~~~~~KTa~l~~~~~~~ga~la~-~~~~~~~~---l~~~g~~lG~ 201 (243)
++..+.+++..++.+-..+..|.... .||.++|+++...-+|...-+. ..-..++. .+.+..+- --++-+..++
T Consensus 383 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~-~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~ 461 (569)
T 2j5c_A 383 STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS-HLFFRLTDSIEEEAAESMHKYHDIVRASCT 461 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHH-HHHHHSCSSCCHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHH-HHHHHcCCCCCHHHHHHhhccHHHHHHHHH
Confidence 45667777788888888777665433 6899999988544444332111 11112222 34443332 2346677788
Q ss_pred HHhHHHhhhcccCC
Q 026139 202 AYQLIDDVLDFTGT 215 (243)
Q Consensus 202 afQi~DD~~D~~~~ 215 (243)
..-+.||+..+..+
T Consensus 462 i~RL~NDI~S~~~E 475 (569)
T 2j5c_A 462 ILRLADDMGTSLDE 475 (569)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHhcccchhhhh
Confidence 88899999998654
No 92
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=23.28 E-value=50 Score=28.21 Aligned_cols=43 Identities=16% Similarity=0.118 Sum_probs=26.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 178 ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
++.+.+.+++....+...-+.+=.+.-|.||+.| +++.+.|+|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 97 (325)
T 3aqb_B 55 SGFLNDTQKDDLIRTAVSLELVHMASLVHDDYID--NSDMRRGNT 97 (325)
T ss_dssp HHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCCEETTEE
T ss_pred HHHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc--CCCCCCCCC
Confidence 3344444434444566666777788899999977 344455554
No 93
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=23.04 E-value=1.1e+02 Score=25.83 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=27.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHhh--hcccCCccccCCC
Q 026139 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKG 222 (243)
Q Consensus 177 ~ga~la~~~~~~~~~l~~~g~~lG~afQi~DD~--~D~~~~~~~~gk~ 222 (243)
+++.+.+.+++....+...-+.+=.+.=|.||+ .| +++.+.|||
T Consensus 54 ~~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D--~s~~RRG~p 99 (299)
T 1rqj_A 54 ATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMD--DDDLRRGLP 99 (299)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--CCCEETTEE
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhc--CCCCCCCCC
Confidence 334444556555555666667777888899999 77 333445554
No 94
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=22.52 E-value=42 Score=28.90 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=25.7
Q ss_pred HcCCCHHHHHHHHHHHHHHHHHHhHHHhhhcccCCccccCCC
Q 026139 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKG 222 (243)
Q Consensus 181 la~~~~~~~~~l~~~g~~lG~afQi~DD~~D~~~~~~~~gk~ 222 (243)
+.+.+++....+...-+.+=.+.-|.||+.| +++.+.|||
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLiHDDi~D--~s~~RRG~p 99 (342)
T 1wy0_A 60 AVGGDPLRAIYPAVAIELIHNYSLVHDDIMD--MDETRRGKP 99 (342)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHHHHHHHHH--TCCCSTTSC
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHCCccc--CCCCCCCCC
Confidence 3344444344566666777888999999987 344455665
No 95
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=21.42 E-value=1.2e+02 Score=25.40 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhHHHhh--hcccCCccccCCC
Q 026139 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKG 222 (243)
Q Consensus 180 ~la~~~~~~~~~l~~~g~~lG~afQi~DD~--~D~~~~~~~~gk~ 222 (243)
.+.+.+++....+...-+.+=.+.-|.||+ .| +++.+.|||
T Consensus 65 ~~~g~~~~~~~~~A~avEliH~asLiHDDip~mD--~s~~RRG~p 107 (293)
T 2j1p_A 65 ELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD--NDDLRRGKP 107 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT--CCSEETTEE
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc--CCCCCCCCC
Confidence 334555554445566666777788899998 56 343444554
No 96
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=21.38 E-value=1.2e+02 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhc
Q 026139 186 AEVAILAFDYGKNLGLAYQLIDDVLD 211 (243)
Q Consensus 186 ~~~~~~l~~~g~~lG~afQi~DD~~D 211 (243)
.+....+...-+.+=.+.=|.||+.|
T Consensus 87 ~~~~~~~AaaiEliH~asLIHDDImD 112 (380)
T 3lk5_A 87 LESVLDAAASLEFIQACALIHDDIID 112 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcC
Confidence 45555566666778888999999977
No 97
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=20.27 E-value=1.8e+02 Score=28.10 Aligned_cols=86 Identities=16% Similarity=0.107 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHhHHhhcccC-CCCCCHHHHHHHHhhhhHHHH-HHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Q 026139 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI-SNSCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (243)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~~~~~y~~~~~~KTa~l~-~~~~~~ga~la~-~~~~~~~~l---~~~g~~lG 200 (243)
++..+.+++.+++.+-..+..|.. ...||.++|++...--+|... ...+..+ ++. .+.+..+.. .++-+..+
T Consensus 598 ~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~~ 675 (785)
T 3s9v_A 598 VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALF--TGEVLTDEVLSKIDRESRFLQLMG 675 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTC--SSSCCCHHHHTTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHH--cCCCCCHHHHhcccccHHHHHHHH
Confidence 455666777788888777777643 336899999998655444432 1112111 122 344443332 45667888
Q ss_pred HHHhHHHhhhcccC
Q 026139 201 LAYQLIDDVLDFTG 214 (243)
Q Consensus 201 ~afQi~DD~~D~~~ 214 (243)
...-+.||+..+..
T Consensus 676 ~I~RL~NDi~S~k~ 689 (785)
T 3s9v_A 676 LTGRLVNDTKTYQA 689 (785)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhH
Confidence 88899999998853
No 98
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=20.21 E-value=1e+02 Score=21.32 Aligned_cols=29 Identities=24% Similarity=0.328 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHh-HHHhhhcccCC
Q 026139 187 EVAILAFDYGKNLGLAYQ-LIDDVLDFTGT 215 (243)
Q Consensus 187 ~~~~~l~~~g~~lG~afQ-i~DD~~D~~~~ 215 (243)
+..++...+|..+|-.|| |.|++-+|...
T Consensus 9 EL~~aA~V~gK~~G~SYq~iid~l~eyh~~ 38 (90)
T 4err_A 9 ELKERAKVFAKPIGASYQGILDQLDLVHQA 38 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 556778889999999986 78888887643
Done!