RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 026139
(243 letters)
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 78.5 bits (192), Expect = 7e-18
Identities = 58/235 (24%), Positives = 96/235 (40%), Gaps = 33/235 (14%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+ +Y +G GKR RP ++ V A
Sbjct: 30 TPVVETMQYGALLG--GKRLRPFLVYATGHMFGVS-----------------TNTLDAPA 70
Query: 67 EITEMIHVASLLHDDVLDDADTRR--GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
E IH SL+HDD+ D G+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADM 130
Query: 125 TEV----------VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 174
EV A+ + + G+ + + + + +D + +KT +LI +
Sbjct: 131 PEVSDRDRISMISELASASGIAGMCGGQALDL-DAEGKHVPLDALERIHRHKTGALIRAA 189
Query: 175 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
+ AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D +
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQ 244
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 67.4 bits (163), Expect = 6e-14
Identities = 43/222 (19%), Positives = 79/222 (35%), Gaps = 24/222 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 129 TLLA-TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
L ++E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
+ LGL +Q+ DD + S K D+
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTE 205
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 62.4 bits (150), Expect = 3e-12
Identities = 64/244 (26%), Positives = 99/244 (40%), Gaps = 32/244 (13%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 67 EITEMIHVASLLHDDVLDDADTRRG--IGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
EMIH SL+HDD+ + + + V G A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 125 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 176
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDM-QSEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH--VIYLS 234
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + Y+S
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 235 LLFI 238
LL
Sbjct: 247 LLGK 250
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 61.2 bits (147), Expect = 9e-12
Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ GK R + +L V + E
Sbjct: 20 FPEQIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAIS----------------SLAA 61
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N ++
Sbjct: 62 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 121
Query: 129 TLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 188
V+ + E + S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 122 RAFLNVIGKMSEAE-LIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 180
Query: 189 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLF 237
++ G +G YQ+ DD++DF G G L V L+
Sbjct: 181 ---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVT 226
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 58.5 bits (140), Expect = 1e-10
Identities = 44/228 (19%), Positives = 75/228 (32%), Gaps = 23/228 (10%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK R ++ L+ + + + ALA + E+ L+ DD+
Sbjct: 51 GKCNRGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDI 100
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-----------CVALASLKNTEVVTLL 131
+D + TRRG G L + FLL + L + T
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160
Query: 132 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEVA 189
T + ++ T ++ S + Y YKTA A+ ++ + E
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220
Query: 190 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHVIYLSLLF 237
A +G +Q+ DD LD G A GK + ++
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQ 268
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 27.4 bits (60), Expect = 1.7
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 47 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.3 bits (57), Expect = 3.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 37 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 25.7 bits (56), Expect = 5.8
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 56 TELRTRQQCIAEITEMIHVASLLHDDV 82
T L++ Q +T I + H +
Sbjct: 406 TSLQSVAQACHFVTMCIFTCTGQHSSI 432
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain
{Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Length = 690
Score = 25.7 bits (56), Expect = 6.1
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 57 ELRTRQQCIAEITEMIHVASLLH 79
+L+T + + +I +AS LH
Sbjct: 519 KLQTLEDLVEVCLIIIWIASALH 541
>d1ki1b1 a.87.1.1 (B:1229-1438) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 210
Score = 25.5 bits (55), Expect = 6.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 52 DALATELRTRQQCIAEI--TEMIHVASL 77
D L R RQ I E+ TE +V L
Sbjct: 1 DMLTPTERKRQGYIHELIVTEENYVNDL 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.370
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 808,033
Number of extensions: 34082
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 13
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)