Query 026140
Match_columns 243
No_of_seqs 104 out of 1685
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1064 AdhP Zn-dependent alco 100.0 2.2E-49 4.8E-54 346.4 18.5 206 14-243 1-207 (339)
2 COG1062 AdhC Zn-dependent alco 100.0 2E-46 4.4E-51 322.9 19.2 227 15-243 1-227 (366)
3 KOG0022 Alcohol dehydrogenase, 100.0 1E-45 2.2E-50 314.5 20.1 232 11-243 2-234 (375)
4 KOG0023 Alcohol dehydrogenase, 100.0 2.1E-43 4.5E-48 301.4 17.7 212 12-240 5-219 (360)
5 KOG0024 Sorbitol dehydrogenase 100.0 1.3E-41 2.8E-46 291.0 16.0 205 15-243 3-211 (354)
6 TIGR02818 adh_III_F_hyde S-(hy 100.0 3.1E-38 6.7E-43 283.9 23.7 225 17-242 2-226 (368)
7 PLN02740 Alcohol dehydrogenase 100.0 2E-38 4.2E-43 286.4 22.4 235 8-242 2-239 (381)
8 cd08301 alcohol_DH_plants Plan 100.0 1.3E-37 2.9E-42 279.5 23.7 227 15-242 1-228 (369)
9 cd08300 alcohol_DH_class_III c 100.0 3E-37 6.5E-42 277.3 23.5 226 16-242 2-227 (368)
10 cd08281 liver_ADH_like1 Zinc-d 100.0 1.7E-36 3.6E-41 272.7 21.7 224 17-242 1-232 (371)
11 cd08277 liver_alcohol_DH_like 100.0 7.1E-36 1.5E-40 268.1 23.5 225 15-242 1-225 (365)
12 PLN02827 Alcohol dehydrogenase 100.0 6.7E-36 1.5E-40 269.7 23.5 228 10-242 6-234 (378)
13 TIGR03451 mycoS_dep_FDH mycoth 100.0 3.4E-36 7.4E-41 269.4 20.9 216 16-242 1-217 (358)
14 cd08239 THR_DH_like L-threonin 100.0 4.6E-36 1E-40 266.1 21.4 203 17-242 1-204 (339)
15 PLN02586 probable cinnamyl alc 100.0 7.5E-36 1.6E-40 267.8 22.0 208 12-239 8-220 (360)
16 TIGR02819 fdhA_non_GSH formald 100.0 1.6E-35 3.5E-40 268.5 21.4 209 16-242 2-226 (393)
17 COG1063 Tdh Threonine dehydrog 100.0 1E-35 2.2E-40 266.1 18.9 206 17-243 1-210 (350)
18 PRK09880 L-idonate 5-dehydroge 100.0 1.8E-35 4E-40 263.2 20.1 206 14-242 2-210 (343)
19 cd08299 alcohol_DH_class_I_II_ 100.0 1.5E-34 3.3E-39 260.4 24.0 229 12-242 3-231 (373)
20 TIGR02822 adh_fam_2 zinc-bindi 100.0 1.2E-34 2.5E-39 257.0 20.6 199 20-242 2-205 (329)
21 cd08230 glucose_DH Glucose deh 100.0 4.4E-34 9.6E-39 255.4 20.9 202 17-242 1-215 (355)
22 cd08237 ribitol-5-phosphate_DH 100.0 4.3E-34 9.3E-39 254.5 19.7 199 15-243 1-206 (341)
23 COG0604 Qor NADPH:quinone redu 100.0 5.9E-34 1.3E-38 252.1 18.3 179 17-242 1-183 (326)
24 PLN02178 cinnamyl-alcohol dehy 100.0 1.9E-33 4.1E-38 253.6 21.7 199 20-238 10-214 (375)
25 PLN02514 cinnamyl-alcohol dehy 100.0 2.4E-33 5.1E-38 251.2 22.0 210 15-240 8-218 (357)
26 TIGR03201 dearomat_had 6-hydro 100.0 2.9E-33 6.3E-38 249.7 20.2 198 20-242 2-206 (349)
27 cd05279 Zn_ADH1 Liver alcohol 100.0 1.2E-32 2.6E-37 247.2 22.9 223 17-241 1-223 (365)
28 PRK10309 galactitol-1-phosphat 100.0 1.4E-32 3.1E-37 244.7 20.7 200 17-242 1-201 (347)
29 cd08278 benzyl_alcohol_DH Benz 100.0 5.3E-32 1.2E-36 243.0 21.8 225 15-241 1-226 (365)
30 cd08231 MDR_TM0436_like Hypoth 100.0 7.9E-32 1.7E-36 241.0 21.8 209 18-242 2-218 (361)
31 cd08296 CAD_like Cinnamyl alco 100.0 2.3E-31 5E-36 235.7 21.6 202 17-242 1-203 (333)
32 cd08283 FDH_like_1 Glutathione 100.0 2.7E-31 5.8E-36 240.2 21.9 219 17-242 1-225 (386)
33 PRK10083 putative oxidoreducta 100.0 2.2E-31 4.7E-36 235.8 20.7 201 17-242 1-202 (339)
34 cd08285 NADP_ADH NADP(H)-depen 100.0 2.9E-31 6.3E-36 236.5 21.2 205 17-242 1-207 (351)
35 cd08233 butanediol_DH_like (2R 100.0 3.3E-31 7E-36 236.2 21.0 201 17-242 1-213 (351)
36 cd05278 FDH_like Formaldehyde 100.0 1E-30 2.3E-35 231.8 20.7 204 17-241 1-207 (347)
37 PRK13771 putative alcohol dehy 100.0 1.5E-30 3.3E-35 229.8 21.4 201 17-241 1-202 (334)
38 cd05284 arabinose_DH_like D-ar 100.0 1.4E-30 3E-35 230.6 20.6 202 17-241 1-207 (340)
39 cd08259 Zn_ADH5 Alcohol dehydr 100.0 7.5E-30 1.6E-34 224.2 22.5 201 17-241 1-202 (332)
40 cd08260 Zn_ADH6 Alcohol dehydr 100.0 8.8E-30 1.9E-34 226.2 22.4 202 17-241 1-204 (345)
41 cd08279 Zn_ADH_class_III Class 100.0 6.7E-30 1.5E-34 229.0 21.3 222 17-241 1-222 (363)
42 cd08256 Zn_ADH2 Alcohol dehydr 100.0 6.1E-30 1.3E-34 227.9 20.8 202 17-241 1-214 (350)
43 cd08246 crotonyl_coA_red croto 100.0 5.3E-30 1.1E-34 232.0 20.0 207 13-242 9-234 (393)
44 TIGR01202 bchC 2-desacetyl-2-h 100.0 4.7E-30 1E-34 225.6 19.1 181 16-242 1-185 (308)
45 PRK09422 ethanol-active dehydr 100.0 1.6E-29 3.5E-34 223.6 21.2 201 17-242 1-203 (338)
46 cd08240 6_hydroxyhexanoate_dh_ 100.0 1.3E-29 2.8E-34 225.7 20.1 203 17-241 1-215 (350)
47 cd08238 sorbose_phosphate_red 100.0 1.6E-29 3.5E-34 230.4 20.5 194 15-242 1-219 (410)
48 cd05283 CAD1 Cinnamyl alcohol 100.0 3.3E-29 7.1E-34 222.3 21.0 207 18-241 1-208 (337)
49 cd08282 PFDH_like Pseudomonas 100.0 4.6E-29 9.9E-34 224.7 22.2 211 17-242 1-217 (375)
50 cd08286 FDH_like_ADH2 formalde 100.0 4.3E-29 9.3E-34 221.8 21.4 203 17-241 1-206 (345)
51 KOG1197 Predicted quinone oxid 100.0 7.4E-30 1.6E-34 212.1 15.0 181 13-243 5-188 (336)
52 cd08284 FDH_like_2 Glutathione 100.0 4.4E-29 9.6E-34 221.3 20.9 204 17-241 1-207 (344)
53 PLN02702 L-idonate 5-dehydroge 100.0 6.4E-29 1.4E-33 222.7 22.1 203 14-241 15-221 (364)
54 cd08298 CAD2 Cinnamyl alcohol 100.0 5.9E-29 1.3E-33 219.2 21.3 202 17-242 1-207 (329)
55 TIGR01751 crot-CoA-red crotony 100.0 4.5E-29 9.8E-34 226.5 20.6 207 13-242 4-230 (398)
56 cd08242 MDR_like Medium chain 100.0 1.1E-28 2.3E-33 216.8 20.5 194 17-242 1-195 (319)
57 cd08263 Zn_ADH10 Alcohol dehyd 100.0 1.4E-28 3E-33 220.7 21.5 223 17-241 1-227 (367)
58 cd08264 Zn_ADH_like2 Alcohol d 100.0 1.5E-28 3.2E-33 216.3 20.9 193 17-234 1-195 (325)
59 cd08261 Zn_ADH7 Alcohol dehydr 100.0 1.4E-28 3.1E-33 217.8 20.8 198 17-241 1-198 (337)
60 cd08266 Zn_ADH_like1 Alcohol d 100.0 2.7E-28 5.8E-33 214.3 21.4 202 17-241 1-206 (342)
61 cd08235 iditol_2_DH_like L-idi 100.0 3.1E-28 6.7E-33 215.8 21.3 200 17-241 1-205 (343)
62 PRK05396 tdh L-threonine 3-deh 100.0 1.8E-28 4E-33 217.5 19.8 200 17-241 1-203 (341)
63 cd08254 hydroxyacyl_CoA_DH 6-h 100.0 2.9E-28 6.3E-33 214.8 20.9 202 17-241 1-204 (338)
64 cd08245 CAD Cinnamyl alcohol d 100.0 3E-28 6.5E-33 214.8 20.6 200 18-241 1-201 (330)
65 cd08287 FDH_like_ADH3 formalde 100.0 5.2E-28 1.1E-32 214.7 20.9 200 17-241 1-208 (345)
66 cd08234 threonine_DH_like L-th 100.0 9E-28 2E-32 211.9 20.9 199 17-241 1-199 (334)
67 cd08265 Zn_ADH3 Alcohol dehydr 100.0 8.4E-28 1.8E-32 217.2 20.4 200 17-241 29-243 (384)
68 KOG0025 Zn2+-binding dehydroge 100.0 3.5E-28 7.6E-33 205.2 16.3 185 8-241 11-200 (354)
69 cd05285 sorbitol_DH Sorbitol d 100.0 1.6E-27 3.5E-32 211.7 20.2 199 19-241 1-202 (343)
70 cd08262 Zn_ADH8 Alcohol dehydr 100.0 1.8E-27 3.9E-32 210.9 20.2 189 17-241 1-201 (341)
71 cd08236 sugar_DH NAD(P)-depend 100.0 1.8E-27 3.9E-32 211.0 20.0 199 17-241 1-199 (343)
72 cd08297 CAD3 Cinnamyl alcohol 100.0 5.5E-27 1.2E-31 207.8 21.8 201 17-241 1-205 (341)
73 cd08232 idonate-5-DH L-idonate 100.0 3.5E-27 7.6E-32 208.9 19.8 200 21-241 2-205 (339)
74 cd05281 TDH Threonine dehydrog 100.0 3.9E-27 8.4E-32 209.2 19.8 200 17-241 1-203 (341)
75 cd08291 ETR_like_1 2-enoyl thi 100.0 3.2E-27 7E-32 208.3 17.5 175 17-242 1-184 (324)
76 cd08258 Zn_ADH4 Alcohol dehydr 100.0 1.3E-26 2.9E-31 203.3 21.2 194 17-234 1-196 (306)
77 cd08274 MDR9 Medium chain dehy 99.9 1.2E-26 2.6E-31 206.0 19.7 192 17-241 1-216 (350)
78 TIGR02817 adh_fam_1 zinc-bindi 99.9 7.6E-27 1.7E-31 206.2 18.0 177 18-241 1-189 (336)
79 cd08292 ETR_like_2 2-enoyl thi 99.9 1.1E-26 2.4E-31 203.9 18.6 174 17-241 1-179 (324)
80 TIGR03366 HpnZ_proposed putati 99.9 4E-27 8.7E-32 204.2 15.3 154 73-242 1-161 (280)
81 cd08293 PTGR2 Prostaglandin re 99.9 5.4E-26 1.2E-30 201.7 18.9 162 29-241 23-195 (345)
82 cd08290 ETR 2-enoyl thioester 99.9 4.7E-26 1E-30 201.7 17.8 171 17-236 1-181 (341)
83 cd08295 double_bond_reductase_ 99.9 1.1E-25 2.3E-30 199.9 18.6 176 14-242 5-192 (338)
84 TIGR00692 tdh L-threonine 3-de 99.9 2E-25 4.4E-30 198.1 18.8 194 23-241 5-201 (340)
85 PRK10754 quinone oxidoreductas 99.9 3.1E-25 6.7E-30 195.4 18.5 177 16-241 1-180 (327)
86 PLN03154 putative allyl alcoho 99.9 6.7E-25 1.4E-29 196.0 20.3 179 11-242 3-199 (348)
87 cd05188 MDR Medium chain reduc 99.9 2.8E-25 6.1E-30 189.0 17.0 172 43-241 1-173 (271)
88 cd08276 MDR7 Medium chain dehy 99.9 1.1E-24 2.3E-29 191.6 21.2 196 17-241 1-199 (336)
89 cd08294 leukotriene_B4_DH_like 99.9 4.6E-25 1E-29 194.1 18.8 168 16-242 2-184 (329)
90 cd05280 MDR_yhdh_yhfp Yhdh and 99.9 7.6E-25 1.7E-29 192.0 20.0 180 17-242 1-187 (325)
91 TIGR02825 B4_12hDH leukotriene 99.9 8.9E-25 1.9E-29 192.8 18.7 155 29-242 19-179 (325)
92 cd08248 RTN4I1 Human Reticulon 99.9 1.2E-24 2.7E-29 193.1 18.3 172 17-235 1-196 (350)
93 cd08249 enoyl_reductase_like e 99.9 8.8E-25 1.9E-29 194.1 17.2 181 17-241 1-193 (339)
94 cd08244 MDR_enoyl_red Possible 99.9 3.2E-24 7E-29 188.0 19.4 176 17-241 1-182 (324)
95 cd08289 MDR_yhfp_like Yhfp put 99.9 2.7E-24 5.8E-29 189.0 18.9 180 17-242 1-187 (326)
96 cd08243 quinone_oxidoreductase 99.9 4E-24 8.6E-29 186.6 19.8 179 17-241 1-182 (320)
97 cd08250 Mgc45594_like Mgc45594 99.9 3.2E-24 7E-29 188.9 19.3 173 16-241 1-179 (329)
98 PTZ00354 alcohol dehydrogenase 99.9 2.6E-24 5.6E-29 189.2 18.6 176 16-241 1-180 (334)
99 cd08270 MDR4 Medium chain dehy 99.9 3.1E-24 6.8E-29 186.7 18.7 171 17-242 1-173 (305)
100 cd08252 AL_MDR Arginate lyase 99.9 5.8E-24 1.3E-28 187.6 19.1 178 17-241 1-190 (336)
101 TIGR02823 oxido_YhdH putative 99.9 8.1E-24 1.8E-28 185.9 20.0 178 18-241 1-185 (323)
102 cd08273 MDR8 Medium chain dehy 99.9 1.4E-23 3.1E-28 184.6 19.4 174 17-241 1-178 (331)
103 cd08288 MDR_yhdh Yhdh putative 99.9 1.8E-23 3.9E-28 183.6 19.7 179 17-241 1-186 (324)
104 cd08253 zeta_crystallin Zeta-c 99.9 4.1E-23 8.9E-28 179.7 19.3 180 17-241 1-184 (325)
105 cd08247 AST1_like AST1 is a cy 99.9 4.7E-23 1E-27 183.6 19.1 175 17-235 1-187 (352)
106 cd05276 p53_inducible_oxidored 99.9 5.7E-23 1.2E-27 178.4 18.6 175 17-241 1-179 (323)
107 cd08271 MDR5 Medium chain dehy 99.9 9.4E-23 2E-27 178.3 20.0 176 17-240 1-179 (325)
108 cd08272 MDR6 Medium chain dehy 99.9 8.8E-23 1.9E-27 178.1 18.8 179 17-241 1-183 (326)
109 cd05282 ETR_like 2-enoyl thioe 99.9 8.7E-23 1.9E-27 178.9 17.8 163 29-241 14-178 (323)
110 PF08240 ADH_N: Alcohol dehydr 99.9 1.2E-23 2.6E-28 157.7 9.3 108 41-170 1-109 (109)
111 cd05286 QOR2 Quinone oxidoredu 99.9 2.8E-22 6.1E-27 173.9 19.0 173 18-241 1-176 (320)
112 cd08269 Zn_ADH9 Alcohol dehydr 99.9 2.1E-22 4.6E-27 175.6 17.5 165 23-241 2-169 (312)
113 cd08268 MDR2 Medium chain dehy 99.9 6E-22 1.3E-26 172.8 19.7 180 17-241 1-184 (328)
114 cd05289 MDR_like_2 alcohol deh 99.9 4.9E-22 1.1E-26 172.0 17.8 176 17-240 1-182 (309)
115 cd05288 PGDH Prostaglandin deh 99.9 9.3E-22 2E-26 173.1 18.4 171 17-242 2-186 (329)
116 TIGR02824 quinone_pig3 putativ 99.9 3.2E-21 7E-26 168.0 19.3 175 17-241 1-179 (325)
117 KOG1198 Zinc-binding oxidoredu 99.9 1.5E-21 3.3E-26 173.8 15.8 176 17-242 5-198 (347)
118 cd08251 polyketide_synthase po 99.9 3E-21 6.5E-26 166.8 17.2 157 36-241 2-160 (303)
119 cd08267 MDR1 Medium chain dehy 99.9 4.3E-21 9.3E-26 167.3 16.9 163 30-240 15-181 (319)
120 cd08241 QOR1 Quinone oxidoredu 99.9 1.3E-20 2.9E-25 163.8 18.6 174 17-241 1-179 (323)
121 cd05195 enoyl_red enoyl reduct 99.9 1.7E-20 3.7E-25 160.3 15.8 147 42-241 1-148 (293)
122 cd08275 MDR3 Medium chain dehy 99.8 1.1E-19 2.5E-24 159.5 19.6 158 18-224 1-162 (337)
123 smart00829 PKS_ER Enoylreducta 99.8 1.5E-19 3.2E-24 154.5 15.1 142 46-241 2-144 (288)
124 COG2130 Putative NADP-dependen 99.8 1.6E-19 3.6E-24 154.0 14.3 160 29-242 27-191 (340)
125 cd08255 2-desacetyl-2-hydroxye 99.7 3.9E-17 8.4E-22 140.6 12.5 119 69-241 19-137 (277)
126 KOG1196 Predicted NAD-dependen 99.6 1.3E-14 2.7E-19 124.0 17.3 173 16-243 3-195 (343)
127 KOG1202 Animal-type fatty acid 99.5 6E-14 1.3E-18 136.1 7.1 143 40-242 1443-1593(2376)
128 PRK09424 pntA NAD(P) transhydr 97.4 0.0002 4.4E-09 67.2 5.3 43 199-242 162-204 (509)
129 TIGR01035 hemA glutamyl-tRNA r 97.3 3.6E-06 7.9E-11 77.3 -7.2 126 73-240 89-218 (417)
130 cd00401 AdoHcyase S-adenosyl-L 97.2 0.00088 1.9E-08 61.4 6.6 52 190-242 189-241 (413)
131 PRK00517 prmA ribosomal protei 96.9 0.0027 5.9E-08 54.2 6.9 81 155-242 78-158 (250)
132 cd05213 NAD_bind_Glutamyl_tRNA 96.8 0.00073 1.6E-08 59.7 2.7 73 166-239 140-215 (311)
133 PRK05476 S-adenosyl-L-homocyst 96.6 0.0094 2E-07 54.8 8.5 51 189-240 198-249 (425)
134 PF01488 Shikimate_DH: Shikima 96.6 0.0048 1E-07 47.7 5.5 44 198-241 8-51 (135)
135 TIGR00561 pntA NAD(P) transhyd 96.3 0.0065 1.4E-07 57.1 5.4 42 200-242 162-203 (511)
136 TIGR00936 ahcY adenosylhomocys 96.3 0.011 2.4E-07 54.1 6.6 50 190-240 182-232 (406)
137 PRK00045 hemA glutamyl-tRNA re 95.9 0.0095 2E-07 54.9 4.5 127 73-240 91-220 (423)
138 PLN02494 adenosylhomocysteinas 95.9 0.021 4.6E-07 53.0 6.5 49 190-239 241-290 (477)
139 PRK08306 dipicolinate synthase 95.7 0.043 9.2E-07 48.2 7.5 40 200-240 150-189 (296)
140 PRK12771 putative glutamate sy 95.5 0.03 6.6E-07 53.4 6.1 37 198-235 133-169 (564)
141 PRK12549 shikimate 5-dehydroge 95.3 0.064 1.4E-06 46.8 7.2 41 200-240 125-165 (284)
142 TIGR00518 alaDH alanine dehydr 95.3 0.029 6.4E-07 50.8 5.2 39 201-240 166-204 (370)
143 PRK08324 short chain dehydroge 95.2 0.026 5.7E-07 55.1 4.8 74 155-240 386-460 (681)
144 PF02826 2-Hacid_dh_C: D-isome 95.1 0.056 1.2E-06 43.7 5.8 40 199-239 33-72 (178)
145 PRK12550 shikimate 5-dehydroge 95.0 0.092 2E-06 45.6 7.3 43 198-240 118-160 (272)
146 PF01262 AlaDh_PNT_C: Alanine 95.0 0.056 1.2E-06 43.3 5.5 39 201-240 19-57 (168)
147 TIGR02853 spore_dpaA dipicolin 94.9 0.11 2.4E-06 45.4 7.5 39 200-239 149-187 (287)
148 PRK11873 arsM arsenite S-adeno 94.9 0.041 8.9E-07 47.3 4.7 46 196-242 72-118 (272)
149 cd01075 NAD_bind_Leu_Phe_Val_D 94.8 0.12 2.5E-06 42.8 7.1 41 199-240 25-65 (200)
150 cd01080 NAD_bind_m-THF_DH_Cycl 94.8 0.14 3.1E-06 41.1 7.3 60 179-239 21-81 (168)
151 COG0169 AroE Shikimate 5-dehyd 94.8 0.094 2E-06 45.7 6.6 43 199-241 123-165 (283)
152 PRK14027 quinate/shikimate deh 94.6 0.11 2.3E-06 45.5 6.6 41 200-240 125-165 (283)
153 TIGR01809 Shik-DH-AROM shikima 94.6 0.063 1.4E-06 46.8 5.2 41 200-240 123-163 (282)
154 PRK00258 aroE shikimate 5-dehy 94.5 0.15 3.2E-06 44.3 7.2 42 199-240 120-161 (278)
155 PTZ00075 Adenosylhomocysteinas 94.3 0.22 4.7E-06 46.5 8.1 40 199-239 251-290 (476)
156 PRK12548 shikimate 5-dehydroge 93.9 0.19 4.2E-06 43.9 6.8 37 200-236 124-160 (289)
157 cd01078 NAD_bind_H4MPT_DH NADP 93.9 0.24 5.3E-06 40.3 7.1 40 200-240 26-66 (194)
158 PLN03209 translocon at the inn 93.7 0.15 3.2E-06 48.7 6.0 45 195-240 73-118 (576)
159 PF00070 Pyr_redox: Pyridine n 93.7 0.2 4.3E-06 34.7 5.2 33 204-237 1-33 (80)
160 PRK12749 quinate/shikimate deh 93.5 0.22 4.8E-06 43.5 6.4 38 200-237 122-159 (288)
161 cd05311 NAD_bind_2_malic_enz N 93.4 0.36 7.7E-06 40.7 7.3 37 199-235 22-60 (226)
162 PRK05866 short chain dehydroge 93.3 0.16 3.5E-06 44.2 5.3 39 201-240 39-78 (293)
163 PF00670 AdoHcyase_NAD: S-aden 93.2 0.31 6.8E-06 38.9 6.2 41 198-239 19-59 (162)
164 PRK13940 glutamyl-tRNA reducta 93.2 0.33 7.2E-06 44.7 7.3 45 196-240 175-219 (414)
165 PRK04148 hypothetical protein; 93.1 0.14 3.1E-06 39.6 4.1 43 197-241 12-54 (134)
166 PRK06196 oxidoreductase; Provi 92.8 0.2 4.4E-06 43.9 5.2 39 201-240 25-64 (315)
167 cd01065 NAD_bind_Shikimate_DH 92.7 0.63 1.4E-05 36.1 7.4 41 200-240 17-57 (155)
168 PLN02780 ketoreductase/ oxidor 92.7 0.19 4.1E-06 44.5 4.8 39 201-240 52-91 (320)
169 TIGR00507 aroE shikimate 5-deh 92.6 0.45 9.7E-06 41.0 7.0 41 199-240 114-154 (270)
170 PF13823 ADH_N_assoc: Alcohol 92.0 0.17 3.7E-06 26.7 2.2 22 17-39 1-22 (23)
171 TIGR02964 xanthine_xdhC xanthi 91.5 0.43 9.2E-06 40.8 5.4 38 199-237 97-134 (246)
172 PF13241 NAD_binding_7: Putati 91.4 0.24 5.1E-06 36.3 3.3 35 201-236 6-40 (103)
173 PRK11705 cyclopropane fatty ac 91.1 0.54 1.2E-05 42.8 6.0 56 185-242 151-206 (383)
174 PRK12769 putative oxidoreducta 90.8 0.44 9.6E-06 46.4 5.5 36 200-236 325-360 (654)
175 PLN02928 oxidoreductase family 90.8 0.52 1.1E-05 42.4 5.5 35 200-235 157-191 (347)
176 PLN00203 glutamyl-tRNA reducta 90.7 0.79 1.7E-05 43.5 6.8 41 200-240 264-304 (519)
177 PRK07424 bifunctional sterol d 90.5 0.59 1.3E-05 42.9 5.7 38 201-239 177-215 (406)
178 TIGR00406 prmA ribosomal prote 90.4 1.1 2.4E-05 39.0 7.2 41 199-241 157-197 (288)
179 PLN02520 bifunctional 3-dehydr 90.2 0.52 1.1E-05 44.8 5.3 40 200-240 377-416 (529)
180 TIGR01318 gltD_gamma_fam gluta 89.9 0.64 1.4E-05 43.4 5.6 36 200-236 139-174 (467)
181 cd05191 NAD_bind_amino_acid_DH 89.9 1.6 3.5E-05 30.6 6.5 35 200-234 21-55 (86)
182 PRK14175 bifunctional 5,10-met 89.9 1.4 3.1E-05 38.5 7.3 56 181-238 137-194 (286)
183 PRK00377 cbiT cobalt-precorrin 89.5 0.63 1.4E-05 38.1 4.7 47 195-242 34-81 (198)
184 PRK13243 glyoxylate reductase; 89.4 0.8 1.7E-05 40.9 5.6 36 201-237 149-184 (333)
185 PRK08410 2-hydroxyacid dehydro 89.4 0.77 1.7E-05 40.6 5.4 36 200-236 143-178 (311)
186 COG0111 SerA Phosphoglycerate 89.2 0.83 1.8E-05 40.7 5.5 33 201-234 141-173 (324)
187 PF02353 CMAS: Mycolic acid cy 89.2 0.4 8.8E-06 41.6 3.4 49 192-242 53-101 (273)
188 PRK06720 hypothetical protein; 88.9 1.1 2.4E-05 35.8 5.6 38 201-239 15-53 (169)
189 TIGR02356 adenyl_thiF thiazole 88.9 0.91 2E-05 37.4 5.2 36 201-236 20-55 (202)
190 PRK08328 hypothetical protein; 88.8 0.88 1.9E-05 38.4 5.1 36 201-236 26-61 (231)
191 PRK06484 short chain dehydroge 88.8 0.77 1.7E-05 43.1 5.3 40 200-240 267-307 (520)
192 PRK06932 glycerate dehydrogena 88.7 0.85 1.8E-05 40.4 5.2 35 201-236 146-180 (314)
193 PRK06487 glycerate dehydrogena 88.6 0.92 2E-05 40.2 5.3 35 200-235 146-180 (317)
194 PRK06719 precorrin-2 dehydroge 88.5 1.2 2.6E-05 35.2 5.5 35 200-235 11-45 (157)
195 PRK06436 glycerate dehydrogena 88.5 1 2.2E-05 39.7 5.5 36 200-236 120-155 (303)
196 cd05313 NAD_bind_2_Glu_DH NAD( 88.5 2.2 4.7E-05 36.7 7.3 35 199-234 35-69 (254)
197 TIGR02355 moeB molybdopterin s 88.4 0.99 2.1E-05 38.4 5.2 37 201-237 23-59 (240)
198 PRK12480 D-lactate dehydrogena 88.3 1.1 2.4E-05 40.0 5.7 37 201-238 145-181 (330)
199 COG0334 GdhA Glutamate dehydro 88.3 2.2 4.7E-05 39.1 7.5 58 177-237 183-241 (411)
200 PRK15469 ghrA bifunctional gly 88.1 1.1 2.3E-05 39.7 5.4 37 200-237 134-170 (312)
201 PRK12809 putative oxidoreducta 88.1 0.89 1.9E-05 44.2 5.3 35 201-236 309-343 (639)
202 TIGR02469 CbiT precorrin-6Y C5 88.0 1.1 2.5E-05 32.8 4.8 48 194-242 12-59 (124)
203 PF13450 NAD_binding_8: NAD(P) 88.0 1.2 2.5E-05 30.0 4.4 29 207-236 1-29 (68)
204 PRK14031 glutamate dehydrogena 87.9 2.1 4.6E-05 39.8 7.3 35 199-234 225-259 (444)
205 PRK14982 acyl-ACP reductase; P 87.9 1.1 2.3E-05 40.2 5.3 43 199-241 152-196 (340)
206 PRK12831 putative oxidoreducta 87.8 1.1 2.4E-05 41.7 5.7 37 199-236 137-173 (464)
207 cd05211 NAD_bind_Glu_Leu_Phe_V 87.8 2.1 4.6E-05 35.8 6.8 36 199-235 20-56 (217)
208 TIGR02354 thiF_fam2 thiamine b 87.7 1.2 2.7E-05 36.7 5.3 35 201-235 20-54 (200)
209 PTZ00079 NADP-specific glutama 87.5 2 4.4E-05 39.9 7.0 36 199-235 234-269 (454)
210 PRK06701 short chain dehydroge 87.4 1.3 2.8E-05 38.4 5.5 38 198-236 42-80 (290)
211 PRK09310 aroDE bifunctional 3- 87.4 1.7 3.7E-05 40.8 6.6 40 200-240 330-369 (477)
212 PRK00257 erythronate-4-phospha 87.4 2 4.3E-05 39.2 6.8 37 198-235 112-148 (381)
213 PRK07985 oxidoreductase; Provi 87.3 1.2 2.6E-05 38.6 5.3 35 200-235 47-82 (294)
214 PRK14192 bifunctional 5,10-met 87.3 3.1 6.6E-05 36.4 7.7 39 199-238 156-195 (283)
215 PRK12814 putative NADPH-depend 87.3 1.1 2.3E-05 43.8 5.3 37 200-237 191-227 (652)
216 PRK12810 gltD glutamate syntha 87.2 1.1 2.5E-05 41.7 5.3 36 200-236 141-176 (471)
217 PF03807 F420_oxidored: NADP o 87.1 1.4 3.1E-05 31.2 4.7 37 204-241 1-41 (96)
218 PLN02686 cinnamoyl-CoA reducta 87.1 1.4 2.9E-05 39.7 5.6 39 199-238 50-89 (367)
219 PRK06128 oxidoreductase; Provi 87.0 1.3 2.8E-05 38.5 5.2 35 200-235 53-88 (300)
220 PRK05690 molybdopterin biosynt 87.0 1.5 3.2E-05 37.4 5.5 36 201-236 31-66 (245)
221 PLN02657 3,8-divinyl protochlo 86.9 1.4 3.1E-05 40.1 5.6 40 198-238 56-96 (390)
222 PRK08261 fabG 3-ketoacyl-(acyl 86.6 1.4 3.1E-05 40.6 5.6 36 200-236 208-244 (450)
223 PF11017 DUF2855: Protein of u 86.5 12 0.00025 33.3 10.9 80 155-238 90-174 (314)
224 PF12847 Methyltransf_18: Meth 86.4 0.98 2.1E-05 32.7 3.6 40 201-242 1-41 (112)
225 PRK12475 thiamine/molybdopteri 86.3 1.5 3.3E-05 39.2 5.4 36 201-236 23-58 (338)
226 PRK07574 formate dehydrogenase 86.3 1.4 3.1E-05 40.1 5.3 35 201-236 191-225 (385)
227 TIGR02632 RhaD_aldol-ADH rhamn 86.2 1.4 3.1E-05 43.1 5.6 38 201-239 413-451 (676)
228 PRK08644 thiamine biosynthesis 86.2 1.6 3.4E-05 36.4 5.1 36 201-236 27-62 (212)
229 PRK11790 D-3-phosphoglycerate 86.1 1.6 3.5E-05 40.1 5.6 36 200-236 149-184 (409)
230 cd00757 ThiF_MoeB_HesA_family 86.0 1.7 3.7E-05 36.4 5.3 36 201-236 20-55 (228)
231 KOG1208 Dehydrogenases with di 85.9 1.2 2.6E-05 39.5 4.5 42 199-241 32-74 (314)
232 PRK14030 glutamate dehydrogena 85.8 3.2 6.9E-05 38.6 7.3 33 200-233 226-258 (445)
233 PRK07688 thiamine/molybdopteri 85.7 1.7 3.7E-05 38.9 5.4 36 201-236 23-58 (339)
234 PRK07201 short chain dehydroge 85.6 1.4 3.1E-05 42.5 5.3 39 201-240 370-409 (657)
235 PRK15438 erythronate-4-phospha 85.6 2.9 6.2E-05 38.1 6.8 36 199-235 113-148 (378)
236 PRK00676 hemA glutamyl-tRNA re 85.5 3.7 8.1E-05 36.8 7.4 41 197-237 169-209 (338)
237 PRK08261 fabG 3-ketoacyl-(acyl 85.5 0.87 1.9E-05 42.0 3.6 42 195-237 27-73 (450)
238 PRK12779 putative bifunctional 85.4 1.3 2.9E-05 45.1 5.1 36 200-236 304-339 (944)
239 PF00289 CPSase_L_chain: Carba 85.4 1.2 2.6E-05 33.2 3.6 36 203-239 3-38 (110)
240 PLN03139 formate dehydrogenase 85.3 1.6 3.4E-05 39.9 5.0 36 200-236 197-232 (386)
241 PRK04176 ribulose-1,5-biphosph 85.3 1.5 3.3E-05 37.5 4.7 33 203-236 26-58 (257)
242 PRK08223 hypothetical protein; 85.1 1.7 3.7E-05 38.0 5.0 36 201-236 26-61 (287)
243 PRK13984 putative oxidoreducta 84.9 1.8 4E-05 41.6 5.6 37 199-236 280-316 (604)
244 PRK05855 short chain dehydroge 84.9 1.7 3.6E-05 41.0 5.3 39 201-240 314-353 (582)
245 COG0373 HemA Glutamyl-tRNA red 84.9 3.5 7.6E-05 37.9 7.0 47 194-240 170-216 (414)
246 TIGR01316 gltA glutamate synth 84.8 1.8 3.9E-05 40.2 5.3 36 200-236 131-166 (449)
247 TIGR00292 thiazole biosynthesi 84.8 1.6 3.5E-05 37.4 4.6 32 204-236 23-54 (254)
248 TIGR01317 GOGAT_sm_gam glutama 84.6 1.9 4.2E-05 40.4 5.5 36 200-236 141-176 (485)
249 PLN02695 GDP-D-mannose-3',5'-e 84.5 1.9 4.2E-05 38.8 5.3 36 200-236 19-55 (370)
250 PLN02306 hydroxypyruvate reduc 84.4 2 4.4E-05 39.2 5.4 35 201-236 164-199 (386)
251 TIGR01381 E1_like_apg7 E1-like 84.3 1.8 3.9E-05 42.0 5.1 36 201-236 337-372 (664)
252 PRK11749 dihydropyrimidine deh 84.3 1.9 4.2E-05 39.9 5.3 36 200-236 138-173 (457)
253 PLN02477 glutamate dehydrogena 84.3 4 8.8E-05 37.6 7.2 33 200-233 204-236 (410)
254 PRK09414 glutamate dehydrogena 84.2 4.2 9.2E-05 37.8 7.4 34 199-233 229-262 (445)
255 PRK09853 putative selenate red 84.2 1.8 3.8E-05 44.3 5.2 36 200-236 537-572 (1019)
256 PRK15116 sulfur acceptor prote 84.0 2.3 4.9E-05 36.9 5.2 37 200-236 28-64 (268)
257 cd05212 NAD_bind_m-THF_DH_Cycl 84.0 6.3 0.00014 30.6 7.3 54 181-236 7-62 (140)
258 COG0686 Ald Alanine dehydrogen 83.8 1.2 2.6E-05 39.4 3.4 40 202-242 168-207 (371)
259 KOG1014 17 beta-hydroxysteroid 83.8 1.4 3.1E-05 38.7 3.9 41 200-242 47-89 (312)
260 PRK14967 putative methyltransf 83.7 3.5 7.7E-05 34.3 6.2 45 195-241 30-74 (223)
261 PRK06567 putative bifunctional 83.7 2 4.4E-05 43.7 5.4 35 200-235 381-415 (1028)
262 PRK08132 FAD-dependent oxidore 83.7 1.6 3.5E-05 41.4 4.6 34 203-237 24-57 (547)
263 COG1086 Predicted nucleoside-d 83.6 2.2 4.8E-05 40.6 5.3 43 199-241 247-290 (588)
264 PRK05600 thiamine biosynthesis 83.6 2.2 4.9E-05 38.7 5.2 36 201-236 40-75 (370)
265 TIGR03315 Se_ygfK putative sel 83.4 2 4.3E-05 44.0 5.3 35 201-236 536-570 (1012)
266 PRK05597 molybdopterin biosynt 83.3 2.4 5.2E-05 38.2 5.3 36 201-236 27-62 (355)
267 PLN02572 UDP-sulfoquinovose sy 83.2 2.2 4.7E-05 39.6 5.1 35 199-234 44-79 (442)
268 PF00208 ELFV_dehydrog: Glutam 83.2 3.2 7E-05 35.4 5.8 33 200-233 30-62 (244)
269 KOG1201 Hydroxysteroid 17-beta 82.7 2.6 5.7E-05 36.9 5.0 38 199-237 35-73 (300)
270 PLN02927 antheraxanthin epoxid 82.7 2.1 4.5E-05 41.9 4.9 37 199-236 78-114 (668)
271 COG2230 Cfa Cyclopropane fatty 82.6 4.1 8.9E-05 35.6 6.2 51 190-242 61-111 (283)
272 PLN02206 UDP-glucuronate decar 82.4 2.7 5.7E-05 39.1 5.4 35 200-235 117-152 (442)
273 PRK08762 molybdopterin biosynt 82.3 2.4 5.2E-05 38.4 5.0 35 201-235 134-168 (376)
274 PLN00093 geranylgeranyl diphos 82.3 2 4.4E-05 39.9 4.6 34 203-237 40-73 (450)
275 PRK15409 bifunctional glyoxyla 82.1 2.8 6.1E-05 37.3 5.2 35 201-236 144-179 (323)
276 PRK12778 putative bifunctional 82.1 2.6 5.7E-05 41.8 5.5 35 200-235 429-463 (752)
277 cd01076 NAD_bind_1_Glu_DH NAD( 82.1 6.7 0.00015 33.0 7.3 35 200-235 29-63 (227)
278 PTZ00188 adrenodoxin reductase 81.9 3.3 7.1E-05 39.1 5.7 37 200-237 37-74 (506)
279 PRK08605 D-lactate dehydrogena 81.9 2.9 6.3E-05 37.3 5.3 36 201-237 145-181 (332)
280 COG0281 SfcA Malic enzyme [Ene 81.7 5.5 0.00012 36.6 6.9 51 185-235 182-234 (432)
281 PRK08294 phenol 2-monooxygenas 81.7 1.9 4E-05 42.0 4.2 35 203-238 33-68 (634)
282 cd01492 Aos1_SUMO Ubiquitin ac 81.6 2.9 6.2E-05 34.4 4.8 36 201-236 20-55 (197)
283 PRK07340 ornithine cyclodeamin 81.6 8 0.00017 34.0 7.9 42 199-240 122-164 (304)
284 COG1052 LdhA Lactate dehydroge 81.4 3.1 6.7E-05 37.1 5.2 36 200-236 144-179 (324)
285 PRK13943 protein-L-isoaspartat 81.3 3.4 7.3E-05 36.8 5.4 48 193-241 72-120 (322)
286 PRK06141 ornithine cyclodeamin 81.1 5.9 0.00013 35.0 6.9 42 199-240 122-164 (314)
287 PLN02166 dTDP-glucose 4,6-dehy 81.0 3.3 7.2E-05 38.3 5.5 35 200-235 118-153 (436)
288 PRK06153 hypothetical protein; 80.9 2.4 5.3E-05 38.6 4.4 37 200-236 174-210 (393)
289 cd01485 E1-1_like Ubiquitin ac 80.9 3.3 7.1E-05 34.1 4.9 36 201-236 18-53 (198)
290 PLN02852 ferredoxin-NADP+ redu 80.9 3 6.6E-05 39.3 5.2 36 200-236 24-61 (491)
291 COG1179 Dinucleotide-utilizing 80.7 2.6 5.6E-05 36.0 4.2 36 201-236 29-64 (263)
292 PRK08125 bifunctional UDP-gluc 80.5 3.1 6.6E-05 40.6 5.3 38 200-238 313-352 (660)
293 PRK10669 putative cation:proto 80.5 2 4.3E-05 41.1 3.9 39 203-242 418-456 (558)
294 PRK08618 ornithine cyclodeamin 80.2 8.3 0.00018 34.2 7.6 42 199-240 124-166 (325)
295 PRK07878 molybdopterin biosynt 80.2 3.3 7.1E-05 37.9 5.1 36 201-236 41-76 (392)
296 PRK07411 hypothetical protein; 80.1 3.3 7.2E-05 37.8 5.1 36 201-236 37-72 (390)
297 PRK12831 putative oxidoreducta 80.0 3.5 7.6E-05 38.5 5.3 37 199-236 278-314 (464)
298 PF03949 Malic_M: Malic enzyme 79.8 5 0.00011 34.5 5.7 47 189-235 12-68 (255)
299 COG2518 Pcm Protein-L-isoaspar 79.7 5.4 0.00012 33.2 5.7 55 178-237 51-105 (209)
300 PRK14191 bifunctional 5,10-met 79.7 10 0.00022 33.1 7.7 55 181-237 136-192 (285)
301 PLN02463 lycopene beta cyclase 79.6 3.1 6.8E-05 38.7 4.8 32 204-236 30-61 (447)
302 PLN02948 phosphoribosylaminoim 79.6 4 8.7E-05 39.3 5.7 37 200-237 20-56 (577)
303 TIGR01316 gltA glutamate synth 79.6 3.8 8.2E-05 38.0 5.4 37 199-236 269-305 (449)
304 PF13738 Pyr_redox_3: Pyridine 79.5 3.3 7.3E-05 33.2 4.5 38 200-238 165-202 (203)
305 PF06325 PrmA: Ribosomal prote 79.4 2.3 5.1E-05 37.3 3.7 40 199-240 159-198 (295)
306 cd05312 NAD_bind_1_malic_enz N 79.1 8 0.00017 33.7 6.9 45 191-235 14-68 (279)
307 PRK12775 putative trifunctiona 79.1 3.5 7.5E-05 42.4 5.3 35 201-236 429-463 (1006)
308 PRK13581 D-3-phosphoglycerate 78.9 4.3 9.3E-05 38.6 5.6 34 201-235 139-172 (526)
309 PLN02256 arogenate dehydrogena 78.8 5.8 0.00013 34.9 6.0 44 193-237 27-70 (304)
310 PRK09496 trkA potassium transp 78.8 3.6 7.8E-05 37.8 5.0 40 200-240 229-268 (453)
311 PRK08317 hypothetical protein; 78.8 3.9 8.5E-05 33.6 4.8 48 193-241 11-59 (241)
312 PLN02735 carbamoyl-phosphate s 78.8 2.4 5.1E-05 44.0 4.1 52 185-237 6-68 (1102)
313 PRK05562 precorrin-2 dehydroge 78.6 5.5 0.00012 33.6 5.5 35 200-235 23-57 (223)
314 PRK11730 fadB multifunctional 78.1 2.9 6.4E-05 41.3 4.3 38 203-241 314-351 (715)
315 cd00762 NAD_bind_malic_enz NAD 77.9 6.3 0.00014 33.8 5.8 45 191-235 14-68 (254)
316 PF02882 THF_DHG_CYH_C: Tetrah 77.8 10 0.00022 30.2 6.6 57 180-238 14-72 (160)
317 PRK09754 phenylpropionate diox 77.6 4.4 9.5E-05 36.8 5.1 37 199-236 141-177 (396)
318 PRK08291 ectoine utilization p 77.5 12 0.00026 33.2 7.8 41 200-240 130-171 (330)
319 PRK06481 fumarate reductase fl 77.0 3.7 8E-05 38.7 4.6 32 204-236 63-94 (506)
320 PRK03562 glutathione-regulated 76.7 2.9 6.3E-05 40.6 3.8 40 202-242 400-439 (621)
321 TIGR01327 PGDH D-3-phosphoglyc 76.0 5.8 0.00013 37.7 5.6 35 200-235 136-170 (525)
322 PRK07121 hypothetical protein; 75.7 4.6 0.0001 37.8 4.8 32 204-236 22-53 (492)
323 COG1249 Lpd Pyruvate/2-oxoglut 75.7 5.3 0.00012 37.3 5.1 37 200-237 171-207 (454)
324 TIGR02992 ectoine_eutC ectoine 75.6 14 0.0003 32.8 7.6 41 200-240 127-168 (326)
325 TIGR02437 FadB fatty oxidation 75.4 3.9 8.4E-05 40.4 4.4 38 203-241 314-351 (714)
326 KOG1203 Predicted dehydrogenas 75.4 5.8 0.00013 36.5 5.2 42 198-240 75-117 (411)
327 KOG2018 Predicted dinucleotide 75.3 4.7 0.0001 35.7 4.3 39 198-236 70-108 (430)
328 KOG1210 Predicted 3-ketosphing 75.2 7.3 0.00016 34.5 5.5 44 198-242 29-73 (331)
329 TIGR02441 fa_ox_alpha_mit fatt 74.8 4.1 8.8E-05 40.5 4.3 38 203-241 336-373 (737)
330 PF12242 Eno-Rase_NADH_b: NAD( 73.8 8.1 0.00018 26.8 4.3 37 197-234 34-72 (78)
331 PF13580 SIS_2: SIS domain; PD 73.8 9.9 0.00021 29.1 5.5 40 193-233 95-137 (138)
332 PRK03659 glutathione-regulated 73.6 4 8.6E-05 39.5 3.9 39 203-242 401-439 (601)
333 PRK10792 bifunctional 5,10-met 73.0 14 0.00031 32.2 6.8 56 181-238 138-195 (285)
334 PTZ00414 10 kDa heat shock pro 72.8 8.5 0.00018 28.2 4.5 23 79-101 46-72 (100)
335 COG2242 CobL Precorrin-6B meth 72.6 8 0.00017 31.6 4.8 47 195-242 28-74 (187)
336 PRK14194 bifunctional 5,10-met 72.6 15 0.00032 32.5 6.8 55 181-237 138-194 (301)
337 COG0476 ThiF Dinucleotide-util 72.4 7 0.00015 33.2 4.8 37 201-237 29-65 (254)
338 PRK13944 protein-L-isoaspartat 72.4 14 0.0003 30.3 6.4 47 193-240 64-111 (205)
339 PLN02985 squalene monooxygenas 72.3 6.5 0.00014 37.3 4.9 33 203-236 44-76 (514)
340 PTZ00367 squalene epoxidase; P 72.2 6.3 0.00014 37.9 4.8 33 203-236 34-66 (567)
341 PRK12778 putative bifunctional 71.9 7 0.00015 38.8 5.2 38 199-236 567-604 (752)
342 PRK11749 dihydropyrimidine deh 71.5 9 0.00019 35.5 5.6 37 199-235 270-306 (457)
343 PRK15317 alkyl hydroperoxide r 71.3 5.9 0.00013 37.4 4.4 31 202-233 211-241 (517)
344 PF10294 Methyltransf_16: Puta 71.3 4.4 9.5E-05 32.5 3.1 54 181-236 20-79 (173)
345 PRK00811 spermidine synthase; 71.1 5.3 0.00012 34.7 3.8 42 200-242 75-116 (283)
346 cd01491 Ube1_repeat1 Ubiquitin 71.1 9 0.0002 33.5 5.2 36 201-236 18-53 (286)
347 PLN00016 RNA-binding protein; 71.0 5.7 0.00012 35.7 4.1 38 200-238 50-92 (378)
348 PRK13942 protein-L-isoaspartat 71.0 12 0.00025 31.0 5.7 49 193-242 68-117 (212)
349 TIGR00438 rrmJ cell division p 70.9 10 0.00022 30.5 5.2 42 196-237 27-68 (188)
350 PRK12770 putative glutamate sy 70.5 9.2 0.0002 34.0 5.3 35 201-235 171-205 (352)
351 PRK11207 tellurite resistance 70.4 6.7 0.00014 32.0 4.0 43 195-240 24-66 (197)
352 PRK07846 mycothione reductase; 70.4 8.6 0.00019 35.7 5.2 35 201-236 165-199 (451)
353 PRK07251 pyridine nucleotide-d 70.0 9.2 0.0002 35.1 5.3 35 201-236 156-190 (438)
354 PRK11154 fadJ multifunctional 69.3 6.4 0.00014 38.9 4.3 38 203-241 310-348 (708)
355 PRK06115 dihydrolipoamide dehy 69.3 10 0.00022 35.3 5.5 36 200-236 172-207 (466)
356 TIGR02440 FadJ fatty oxidation 69.2 6.9 0.00015 38.6 4.5 38 203-241 305-343 (699)
357 PRK12814 putative NADPH-depend 69.0 9.7 0.00021 37.2 5.5 39 198-236 319-357 (652)
358 PRK14189 bifunctional 5,10-met 69.0 20 0.00044 31.3 6.8 55 181-237 137-193 (285)
359 PRK13656 trans-2-enoyl-CoA red 68.8 10 0.00022 34.7 5.1 33 200-234 39-74 (398)
360 PRK12779 putative bifunctional 68.8 8.7 0.00019 39.3 5.2 35 201-236 446-480 (944)
361 TIGR03385 CoA_CoA_reduc CoA-di 68.8 11 0.00023 34.5 5.5 36 200-236 135-170 (427)
362 PRK05976 dihydrolipoamide dehy 68.7 9.2 0.0002 35.6 5.1 35 201-236 179-213 (472)
363 COG0446 HcaD Uncharacterized N 68.5 9.5 0.00021 34.0 5.0 35 202-237 136-170 (415)
364 PF01135 PCMT: Protein-L-isoas 68.4 8.9 0.00019 31.9 4.4 52 185-239 58-110 (209)
365 PRK13748 putative mercuric red 68.3 8.4 0.00018 36.6 4.8 31 204-235 100-130 (561)
366 PRK13512 coenzyme A disulfide 68.3 11 0.00024 34.7 5.5 36 200-236 146-181 (438)
367 PRK14188 bifunctional 5,10-met 68.1 24 0.00051 31.1 7.2 51 181-233 137-189 (296)
368 PRK04965 NADH:flavorubredoxin 67.9 10 0.00022 34.0 5.1 37 199-236 138-174 (377)
369 PTZ00245 ubiquitin activating 67.8 11 0.00025 32.5 4.9 36 201-236 25-60 (287)
370 PRK12810 gltD glutamate syntha 67.7 11 0.00024 35.1 5.4 35 199-233 278-312 (471)
371 PRK05249 soluble pyridine nucl 67.3 11 0.00023 34.9 5.2 35 201-236 174-208 (461)
372 PRK12775 putative trifunctiona 67.2 10 0.00022 39.1 5.4 37 199-235 568-604 (1006)
373 TIGR03140 AhpF alkyl hydropero 67.2 8.9 0.00019 36.2 4.7 33 200-233 210-242 (515)
374 PRK06467 dihydrolipoamide dehy 67.1 11 0.00024 35.2 5.2 35 201-236 173-207 (471)
375 PTZ00058 glutathione reductase 66.9 11 0.00024 36.1 5.3 35 201-236 236-270 (561)
376 TIGR01372 soxA sarcosine oxida 66.7 8.2 0.00018 39.6 4.6 33 203-236 164-196 (985)
377 PLN02464 glycerol-3-phosphate 66.7 9.4 0.0002 37.2 4.8 33 203-236 72-104 (627)
378 PRK09564 coenzyme A disulfide 66.7 18 0.00038 33.2 6.5 36 200-236 147-182 (444)
379 PLN02697 lycopene epsilon cycl 66.4 9.4 0.0002 36.4 4.6 30 204-234 110-139 (529)
380 COG1148 HdrA Heterodisulfide r 66.4 8.9 0.00019 36.2 4.3 37 199-236 121-157 (622)
381 PRK14851 hypothetical protein; 66.3 11 0.00024 37.1 5.2 36 201-236 42-77 (679)
382 TIGR03452 mycothione_red mycot 66.3 10 0.00022 35.2 4.8 35 201-236 168-202 (452)
383 PRK01747 mnmC bifunctional tRN 66.1 9.3 0.0002 37.3 4.7 32 203-235 261-292 (662)
384 PLN02852 ferredoxin-NADP+ redu 66.0 14 0.0003 34.9 5.6 38 199-236 163-220 (491)
385 PRK14533 groES co-chaperonin G 66.0 13 0.00028 26.7 4.2 23 79-101 37-63 (91)
386 COG0493 GltD NADPH-dependent g 65.8 10 0.00022 35.5 4.6 37 200-237 121-157 (457)
387 TIGR01317 GOGAT_sm_gam glutama 65.6 13 0.00028 34.9 5.4 36 200-235 281-316 (485)
388 TIGR01421 gluta_reduc_1 glutat 65.5 12 0.00025 34.7 5.0 35 201-236 165-199 (450)
389 PRK06370 mercuric reductase; V 65.2 13 0.00027 34.6 5.2 35 201-236 170-204 (463)
390 PRK06327 dihydrolipoamide dehy 65.2 13 0.00028 34.7 5.3 35 201-236 182-216 (475)
391 PRK05579 bifunctional phosphop 65.1 14 0.0003 34.0 5.3 36 200-236 186-238 (399)
392 PTZ00139 Succinate dehydrogena 65.1 9.6 0.00021 37.0 4.5 32 204-236 31-62 (617)
393 KOG0685 Flavin-containing amin 65.1 13 0.00029 34.7 5.2 34 200-233 19-52 (498)
394 PLN02602 lactate dehydrogenase 64.6 17 0.00037 32.7 5.8 37 203-239 38-75 (350)
395 PRK07818 dihydrolipoamide dehy 64.6 13 0.00028 34.5 5.2 35 201-236 171-205 (466)
396 PRK06416 dihydrolipoamide dehy 64.4 13 0.00028 34.4 5.2 35 201-236 171-205 (462)
397 cd01079 NAD_bind_m-THF_DH NAD 64.2 30 0.00065 28.5 6.6 51 181-233 32-93 (197)
398 TIGR03329 Phn_aa_oxid putative 64.2 11 0.00024 34.9 4.7 31 204-235 26-58 (460)
399 TIGR02053 MerA mercuric reduct 64.2 13 0.00028 34.4 5.1 34 202-236 166-199 (463)
400 PRK06046 alanine dehydrogenase 64.0 30 0.00065 30.7 7.2 41 200-240 127-168 (326)
401 PRK06292 dihydrolipoamide dehy 63.9 14 0.00029 34.2 5.2 35 201-236 168-202 (460)
402 COG2264 PrmA Ribosomal protein 63.8 26 0.00056 30.9 6.5 67 165-238 130-197 (300)
403 PRK07573 sdhA succinate dehydr 63.8 11 0.00023 36.9 4.6 30 204-234 37-66 (640)
404 COG1635 THI4 Ribulose 1,5-bisp 63.2 11 0.00023 32.0 3.8 31 204-235 32-62 (262)
405 KOG0069 Glyoxylate/hydroxypyru 62.8 12 0.00026 33.5 4.4 37 200-237 160-196 (336)
406 PRK14176 bifunctional 5,10-met 62.8 32 0.0007 30.1 6.9 55 181-237 143-199 (287)
407 COG2072 TrkA Predicted flavopr 62.8 12 0.00025 34.8 4.5 39 198-237 171-209 (443)
408 COG2226 UbiE Methylase involve 62.7 17 0.00036 31.0 5.0 57 185-242 34-91 (238)
409 PRK07402 precorrin-6B methylas 62.6 22 0.00049 28.7 5.7 49 193-242 32-80 (196)
410 PRK12769 putative oxidoreducta 62.5 14 0.00031 36.0 5.2 36 200-235 466-501 (654)
411 PLN02661 Putative thiazole syn 62.3 13 0.00028 33.7 4.4 34 202-236 92-126 (357)
412 cd00320 cpn10 Chaperonin 10 Kd 62.1 11 0.00024 27.1 3.3 25 78-102 35-68 (93)
413 PRK00107 gidB 16S rRNA methylt 62.1 16 0.00035 29.7 4.7 43 199-242 43-85 (187)
414 PRK08287 cobalt-precorrin-6Y C 62.0 24 0.00053 28.2 5.8 48 194-242 24-71 (187)
415 PRK01581 speE spermidine synth 62.0 15 0.00032 33.4 4.8 43 199-242 148-190 (374)
416 PF02423 OCD_Mu_crystall: Orni 61.9 33 0.00072 30.2 7.0 42 200-241 126-168 (313)
417 TIGR01350 lipoamide_DH dihydro 61.8 15 0.00033 33.9 5.1 35 201-236 169-203 (461)
418 TIGR00080 pimt protein-L-isoas 61.8 21 0.00044 29.4 5.4 49 193-242 69-118 (215)
419 PRK00216 ubiE ubiquinone/menaq 61.7 14 0.00031 30.3 4.5 44 195-240 45-90 (239)
420 PLN00128 Succinate dehydrogena 61.7 12 0.00026 36.5 4.5 31 205-236 53-83 (635)
421 KOG0399 Glutamate synthase [Am 61.6 11 0.00024 39.2 4.3 37 200-237 1783-1819(2142)
422 COG0031 CysK Cysteine synthase 61.5 17 0.00038 32.0 5.0 39 194-233 54-93 (300)
423 TIGR01424 gluta_reduc_2 glutat 61.4 15 0.00033 33.8 5.0 35 201-236 165-199 (446)
424 PRK06116 glutathione reductase 61.4 17 0.00037 33.5 5.3 35 201-236 166-200 (450)
425 KOG1610 Corticosteroid 11-beta 61.2 25 0.00054 31.2 5.9 42 198-240 25-67 (322)
426 TIGR02371 ala_DH_arch alanine 61.1 47 0.001 29.4 7.9 42 199-240 125-167 (325)
427 PRK06912 acoL dihydrolipoamide 60.6 16 0.00035 33.9 5.0 35 201-236 169-203 (458)
428 PTZ00058 glutathione reductase 60.6 14 0.00031 35.4 4.7 30 205-235 51-80 (561)
429 PLN02366 spermidine synthase 60.4 12 0.00025 33.1 3.9 40 200-240 90-129 (308)
430 PRK14727 putative mercuric red 60.4 19 0.0004 33.7 5.4 34 201-235 187-220 (479)
431 PLN02529 lysine-specific histo 60.4 15 0.00032 36.6 4.9 34 202-236 160-193 (738)
432 PRK13748 putative mercuric red 60.3 17 0.00037 34.5 5.3 34 201-235 269-302 (561)
433 PRK12862 malic enzyme; Reviewe 60.2 27 0.00059 34.9 6.7 46 190-235 181-228 (763)
434 TIGR03143 AhpF_homolog putativ 59.8 16 0.00034 34.9 4.9 36 200-236 141-176 (555)
435 PLN02328 lysine-specific histo 59.6 15 0.00033 36.9 4.9 33 202-235 238-270 (808)
436 COG0499 SAM1 S-adenosylhomocys 59.6 12 0.00027 33.8 3.8 39 199-238 206-244 (420)
437 COG0503 Apt Adenine/guanine ph 59.6 23 0.0005 28.6 5.2 35 198-233 112-150 (179)
438 TIGR01292 TRX_reduct thioredox 59.4 19 0.00042 30.5 5.0 36 200-236 139-174 (300)
439 COG4821 Uncharacterized protei 59.4 19 0.00041 29.9 4.5 44 193-237 96-142 (243)
440 PRK10262 thioredoxin reductase 59.3 19 0.00041 31.5 5.0 36 200-236 144-179 (321)
441 PRK09853 putative selenate red 59.3 19 0.0004 37.2 5.5 39 198-236 664-703 (1019)
442 KOG2015 NEDD8-activating compl 59.1 10 0.00023 33.8 3.2 33 203-235 41-73 (422)
443 PRK12861 malic enzyme; Reviewe 59.0 25 0.00054 35.1 6.2 45 190-234 177-223 (764)
444 TIGR01372 soxA sarcosine oxida 59.0 29 0.00064 35.7 6.9 40 196-235 311-350 (985)
445 PRK14172 bifunctional 5,10-met 58.9 44 0.00095 29.2 7.0 55 181-237 137-193 (278)
446 PLN02507 glutathione reductase 58.2 16 0.00034 34.5 4.5 29 205-234 28-56 (499)
447 PRK14177 bifunctional 5,10-met 58.2 45 0.00097 29.2 7.0 56 181-238 138-195 (284)
448 PF02629 CoA_binding: CoA bind 58.0 18 0.00038 25.8 3.9 38 202-239 3-41 (96)
449 PRK07232 bifunctional malic en 58.0 34 0.00073 34.2 6.9 46 190-235 173-220 (752)
450 TIGR01318 gltD_gamma_fam gluta 57.9 21 0.00046 33.3 5.3 37 200-236 280-316 (467)
451 PLN02676 polyamine oxidase 57.8 30 0.00066 32.5 6.4 36 201-236 25-60 (487)
452 PRK14180 bifunctional 5,10-met 57.5 47 0.001 29.0 7.0 54 181-236 137-192 (282)
453 PTZ00317 NADP-dependent malic 57.4 42 0.00092 32.2 7.2 43 193-235 288-340 (559)
454 PRK14694 putative mercuric red 57.4 21 0.00046 33.1 5.3 33 201-234 177-209 (468)
455 PTZ00098 phosphoethanolamine N 57.4 21 0.00046 30.5 4.9 47 193-241 44-90 (263)
456 PRK08010 pyridine nucleotide-d 57.2 23 0.0005 32.5 5.4 35 201-236 157-191 (441)
457 PLN02507 glutathione reductase 56.9 20 0.00043 33.8 5.0 34 202-236 203-236 (499)
458 KOG1429 dTDP-glucose 4-6-dehyd 56.9 28 0.00061 30.7 5.4 39 196-235 21-60 (350)
459 PRK14852 hypothetical protein; 56.8 19 0.00041 36.9 5.0 36 201-236 331-366 (989)
460 PRK14190 bifunctional 5,10-met 56.7 50 0.0011 28.9 7.0 55 181-237 137-193 (284)
461 TIGR01373 soxB sarcosine oxida 56.6 20 0.00044 32.3 4.9 36 200-235 28-64 (407)
462 PRK04457 spermidine synthase; 56.6 21 0.00046 30.6 4.7 42 200-242 65-106 (262)
463 PLN03129 NADP-dependent malic 56.3 41 0.00089 32.4 6.9 44 192-235 311-365 (581)
464 PRK14179 bifunctional 5,10-met 56.0 44 0.00095 29.2 6.6 53 181-235 137-191 (284)
465 PTZ00306 NADH-dependent fumara 55.9 17 0.00036 38.2 4.7 31 205-236 412-442 (1167)
466 TIGR03140 AhpF alkyl hydropero 55.8 21 0.00045 33.7 5.0 35 200-235 350-384 (515)
467 TIGR03315 Se_ygfK putative sel 55.6 22 0.00048 36.7 5.3 38 199-236 663-701 (1012)
468 PRK11199 tyrA bifunctional cho 55.3 44 0.00095 30.3 6.8 35 201-236 97-132 (374)
469 PTZ00052 thioredoxin reductase 55.3 23 0.0005 33.3 5.1 33 201-234 181-213 (499)
470 PRK05472 redox-sensing transcr 55.2 34 0.00074 28.2 5.7 44 194-238 76-122 (213)
471 TIGR03840 TMPT_Se_Te thiopurin 55.0 35 0.00076 28.3 5.7 39 199-240 32-70 (213)
472 PRK07845 flavoprotein disulfid 55.0 24 0.00053 32.7 5.3 34 202-236 177-210 (466)
473 PF10727 Rossmann-like: Rossma 55.0 11 0.00025 28.7 2.5 34 202-236 10-43 (127)
474 PRK00364 groES co-chaperonin G 54.6 15 0.00033 26.5 3.0 23 79-101 37-68 (95)
475 PTZ00153 lipoamide dehydrogena 54.4 22 0.00047 35.0 4.9 35 201-236 311-345 (659)
476 PTZ00153 lipoamide dehydrogena 54.2 20 0.00043 35.2 4.6 31 204-235 118-148 (659)
477 PLN02712 arogenate dehydrogena 54.0 30 0.00065 34.0 5.8 37 200-237 367-403 (667)
478 TIGR02374 nitri_red_nirB nitri 54.0 23 0.00051 35.4 5.2 36 200-236 138-173 (785)
479 PRK13529 malate dehydrogenase; 53.8 52 0.0011 31.6 7.1 44 192-235 285-338 (563)
480 TIGR01423 trypano_reduc trypan 53.6 27 0.00058 32.9 5.3 36 200-236 185-223 (486)
481 PRK05225 ketol-acid reductoiso 53.5 8.8 0.00019 35.9 1.9 31 199-230 33-63 (487)
482 PLN02712 arogenate dehydrogena 53.4 31 0.00067 33.9 5.8 36 202-238 52-87 (667)
483 PLN02612 phytoene desaturase 52.9 25 0.00055 33.7 5.1 37 199-236 90-126 (567)
484 PRK07589 ornithine cyclodeamin 52.9 67 0.0015 28.9 7.5 41 200-240 127-168 (346)
485 PLN02487 zeta-carotene desatur 52.8 27 0.00059 33.6 5.2 33 203-236 76-108 (569)
486 PLN02336 phosphoethanolamine N 52.8 21 0.00045 33.2 4.4 45 195-241 260-304 (475)
487 PRK06407 ornithine cyclodeamin 52.5 51 0.0011 28.9 6.5 41 200-240 115-156 (301)
488 PRK00312 pcm protein-L-isoaspa 52.4 47 0.001 27.1 6.1 45 193-240 70-114 (212)
489 PRK14173 bifunctional 5,10-met 52.4 62 0.0013 28.4 6.9 55 181-237 134-190 (287)
490 PRK14187 bifunctional 5,10-met 52.2 63 0.0014 28.4 7.0 55 181-237 139-195 (294)
491 PLN02516 methylenetetrahydrofo 51.6 66 0.0014 28.4 7.0 56 180-237 145-202 (299)
492 PRK15317 alkyl hydroperoxide r 51.6 26 0.00057 33.0 4.9 36 200-236 349-384 (517)
493 PRK14166 bifunctional 5,10-met 51.4 67 0.0014 28.1 7.0 55 181-237 136-192 (282)
494 TIGR00477 tehB tellurite resis 51.3 25 0.00053 28.6 4.1 45 193-240 22-66 (195)
495 PLN02546 glutathione reductase 51.3 24 0.00052 33.9 4.6 29 205-234 82-110 (558)
496 COG2263 Predicted RNA methylas 51.2 63 0.0014 26.6 6.3 43 196-242 40-84 (198)
497 cd01493 APPBP1_RUB Ubiquitin a 51.2 29 0.00063 32.2 5.0 36 201-236 19-54 (425)
498 PLN03000 amine oxidase 50.9 41 0.00089 34.2 6.2 35 201-236 183-217 (881)
499 PF05706 CDKN3: Cyclin-depende 50.8 39 0.00084 27.2 5.0 28 199-226 130-160 (168)
500 PRK14169 bifunctional 5,10-met 50.3 74 0.0016 27.8 7.1 54 181-236 135-190 (282)
No 1
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=100.00 E-value=2.2e-49 Score=346.44 Aligned_cols=206 Identities=33% Similarity=0.477 Sum_probs=194.7
Q ss_pred CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
+++|||+++.++++++++.|++.|.|+++||||||+|+|||++|++.++|.++...+|+++|||++|+|+++|++|++|+
T Consensus 1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k 80 (339)
T COG1064 1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK 80 (339)
T ss_pred CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence 46899999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred CCCEEEe-eccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 94 ~Gd~Vv~-~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
+||||.+ +...+|++|.||+++++++|+.-.. .|+..+| +|+||+++++.+++++|+
T Consensus 81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~ 138 (339)
T COG1064 81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE 138 (339)
T ss_pred CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence 9999977 9999999999999999999998664 5555665 999999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
++++++||.+.|...|.|+++. ..++++|++|+|.|+|++|++++|+|+++|+ +|++++++++|+++++
T Consensus 139 ~~d~~~aApllCaGiT~y~alk-~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~ 207 (339)
T COG1064 139 GLDLAEAAPLLCAGITTYRALK-KANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAK 207 (339)
T ss_pred CCChhhhhhhhcCeeeEeeehh-hcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHH
Confidence 9999999999999999999864 5999999999999999999999999999998 9999999999998763
No 2
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=100.00 E-value=2e-46 Score=322.93 Aligned_cols=227 Identities=46% Similarity=0.766 Sum_probs=220.5
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
|++||+++.++++||.++|+.+++|+++|||||+.++++|++|...++|..+.. +|.++|||++|+|++||++|+.+++
T Consensus 1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp 79 (366)
T COG1062 1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP 79 (366)
T ss_pred CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence 578999999999999999999999999999999999999999999999998886 9999999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||.|+.....+|++|.+|+++..++|+.++.+...|...+|+.|+. .++.+.+|+.|.++|++|.+++..++++++++.
T Consensus 80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~ 158 (366)
T COG1062 80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA 158 (366)
T ss_pred CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence 9999999999999999999999999999999999999999999999 888999999999999999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
+++.++++.|...|.+.++.+.+++++|++|.|+|-|++|++++|-|+..|+.++|+++.+++|+++++
T Consensus 159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~ 227 (366)
T COG1062 159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK 227 (366)
T ss_pred CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 3
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1e-45 Score=314.49 Aligned_cols=232 Identities=56% Similarity=0.945 Sum_probs=221.6
Q ss_pred CCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140 11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 11 ~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
..++.++||++..++++||.++|+..++|+.+||+||++++++|++|...++|..+...+|.++|||.+|+|+++|.+|+
T Consensus 2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~ 81 (375)
T KOG0022|consen 2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT 81 (375)
T ss_pred CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence 45678999999999999999999999999999999999999999999999999887788999999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCC-CCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~-g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 169 (243)
+|++||+|+......|++|.+|+++..|+|++++.+... ++..||+.|+. .+|.+.|||.+..+|+||.+++...+++
T Consensus 82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k 160 (375)
T KOG0022|consen 82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK 160 (375)
T ss_pred ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence 999999999999999999999999999999999988544 44569999999 8999999999999999999999999999
Q ss_pred cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
|++..+.+.++++.|.+.|+|.|+++.+++++|+++.|+|-|.+|+++++-||+.|+.++|++|.+++|.+.+|
T Consensus 161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak 234 (375)
T KOG0022|consen 161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK 234 (375)
T ss_pred cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764
No 4
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-43 Score=301.44 Aligned_cols=212 Identities=29% Similarity=0.428 Sum_probs=192.9
Q ss_pred CCCceeeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140 12 GKPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89 (243)
Q Consensus 12 ~~~~~~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v 89 (243)
..|.+.++|.+..++. ++++++++.|+|+++||+|+|+|+|||++|++.+.++++...+|.|+|||++|+|+++|++|
T Consensus 5 ~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~V 84 (360)
T KOG0023|consen 5 SIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSNV 84 (360)
T ss_pred cCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCCc
Confidence 3467899999999998 46669999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCEE-EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140 90 DGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (243)
Q Consensus 90 ~~~~~Gd~V-v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 168 (243)
++|++||+| +-....+|..|.+|.++.++||+....+ +.|...|| ....|+|++|+++++.+++
T Consensus 85 ~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t-~~g~~~DG--------------t~~~ggf~~~~~v~~~~a~ 149 (360)
T KOG0023|consen 85 TGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFT-YNGVYHDG--------------TITQGGFQEYAVVDEVFAI 149 (360)
T ss_pred ccccccCeeeeeEEeccccCccccccCCcccCCceeEe-ccccccCC--------------CCccCccceeEEEeeeeEE
Confidence 999999999 7788899999999999999999975443 57777777 3334589999999999999
Q ss_pred EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+||++++.+.||.+.|+..|.|++| ...++.||+++.|.|+|++|++++|+|++||. +|+++++++.+.+
T Consensus 150 kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kke 219 (360)
T KOG0023|consen 150 KIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKE 219 (360)
T ss_pred ECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHH
Confidence 9999999999999999999999975 56788899999999997799999999999999 9999999985444
No 5
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.3e-41 Score=291.00 Aligned_cols=205 Identities=29% Similarity=0.479 Sum_probs=188.6
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
..|+|+++..+++ +++.+.|.|++ .|+||+|++.+++||++|++++...+.. .+.|+++|||.+|+|+++|+.|+
T Consensus 3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk 81 (354)
T KOG0024|consen 3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK 81 (354)
T ss_pred cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence 4689999999998 99999999987 9999999999999999999999765422 46899999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
++++||||++-|..+|+.|..|++|.+|+|+.+.+- -....+| ++++|++.++++++++
T Consensus 82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~--atpp~~G-------------------~la~y~~~~~dfc~KL 140 (354)
T KOG0024|consen 82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFC--ATPPVDG-------------------TLAEYYVHPADFCYKL 140 (354)
T ss_pred ccccCCeEEecCCCccccchhhhCcccccCCccccc--cCCCcCC-------------------ceEEEEEechHheeeC
Confidence 999999999999999999999999999999999873 1223344 9999999999999999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
||+++++++|++. +++++++|. +++++++|.+|||+|+|++|+++...|+++|+.+|+.++-.+.|+++||
T Consensus 141 Pd~vs~eeGAl~e-PLsV~~HAc-r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak 211 (354)
T KOG0024|consen 141 PDNVSFEEGALIE-PLSVGVHAC-RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAK 211 (354)
T ss_pred CCCCchhhccccc-chhhhhhhh-hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHH
Confidence 9999999999998 899999975 7899999999999999999999999999999999999999999999874
No 6
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=100.00 E-value=3.1e-38 Score=283.85 Aligned_cols=225 Identities=48% Similarity=0.784 Sum_probs=190.2
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++..+++++++++++.|.|.++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus 2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd 81 (368)
T TIGR02818 2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81 (368)
T ss_pred ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence 89999999887799999999999999999999999999999999988765556799999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|++.+..+|++|.+|+.+..++|.......+.|...+|..++. ..|...++..+.|+|+||++++.++++++|+++++
T Consensus 82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~ 160 (368)
T TIGR02818 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL 160 (368)
T ss_pred EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence 99999999999999999999999987542112232222221111 01111122223469999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++.+++++.|+|+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|++++
T Consensus 161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a 226 (368)
T TIGR02818 161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELA 226 (368)
T ss_pred HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 999999999999999877788899999999999999999999999999997799999999887764
No 7
>PLN02740 Alcohol dehydrogenase-like
Probab=100.00 E-value=2e-38 Score=286.37 Aligned_cols=235 Identities=54% Similarity=0.950 Sum_probs=192.9
Q ss_pred CCCCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeC
Q 026140 8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG 86 (243)
Q Consensus 8 ~~~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG 86 (243)
+++.+++++|||+++.++++++.+++++.|.|.++||+|||++++||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus 2 ~~~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG 81 (381)
T PLN02740 2 SETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVG 81 (381)
T ss_pred ccccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeC
Confidence 345677889999999999877889999999999999999999999999999999886532 3578999999999999999
Q ss_pred CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCcccccc-CCceeecccccceeeeeEEecc
Q 026140 87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDI 164 (243)
Q Consensus 87 ~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~-~~~~~~~~~~~g~~~~~~~v~~ 164 (243)
+++++|++||+|++.+..+|+.|.+|..+.+++|++.......+.. .+|..+++.. .+....++...|+|+||++++.
T Consensus 82 ~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~ 161 (381)
T PLN02740 82 EGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDS 161 (381)
T ss_pred CCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEeh
Confidence 9999999999999999999999999999999999886532110000 0010000000 0000011122369999999999
Q ss_pred CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++++|+++++++++.+.+.+.|+|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a 239 (381)
T PLN02740 162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG 239 (381)
T ss_pred HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHH
Confidence 999999999999999999999999999877788999999999999999999999999999996699999999888765
No 8
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=100.00 E-value=1.3e-37 Score=279.46 Aligned_cols=227 Identities=55% Similarity=0.970 Sum_probs=191.1
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
++|||+++.++++++++++++.|.|+++||+|||.+++||++|+++++|..+...+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~ 80 (369)
T cd08301 1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP 80 (369)
T ss_pred CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence 47999999998888999999999999999999999999999999999887655567899999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
||+|++.+..+|++|.+|..+.+++|.........|... ++..++. ..|...+++...|+|+||++++...++++|++
T Consensus 81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~ 159 (369)
T cd08301 81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE 159 (369)
T ss_pred CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence 999999999999999999999999998764321122211 0000000 11222223333469999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++++++.+.+.|+|.++....++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~ 228 (369)
T cd08301 160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQA 228 (369)
T ss_pred CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 999999999999999999887788899999999999999999999999999996799999999887764
No 9
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=100.00 E-value=3e-37 Score=277.28 Aligned_cols=226 Identities=49% Similarity=0.846 Sum_probs=191.1
Q ss_pred eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
+|||+++.+.++++++++++.|.|.++||+|||++++||++|+.++.+.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG 81 (368)
T cd08300 2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG 81 (368)
T ss_pred cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence 68999998888779999999999999999999999999999999998876555689999999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|++.+..+|++|.+|+.+.+++|.......+.|...+|..++. .+|...+++.+.|+|+||+.++.+.++++|++++
T Consensus 82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~ 160 (368)
T cd08300 82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP 160 (368)
T ss_pred CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence 999999999999999999999999987542212233333322211 1121112222346999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++.+.+.+.|+|+++.+...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~ 227 (368)
T cd08300 161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELA 227 (368)
T ss_pred hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 9999999999999999877778899999999999999999999999999996799999999888764
No 10
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=100.00 E-value=1.7e-36 Score=272.71 Aligned_cols=224 Identities=38% Similarity=0.616 Sum_probs=185.6
Q ss_pred eeeEEeccCCC--------CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140 17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88 (243)
Q Consensus 17 ~ka~~~~~~~~--------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~ 88 (243)
|||+++.+++. .+++++++.|.|+++||+|||.+++||++|++++.|.++. .+|.++|||++|+|+++|++
T Consensus 1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~GhE~~G~V~~vG~~ 79 (371)
T cd08281 1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR-PLPMALGHEAAGVVVEVGEG 79 (371)
T ss_pred CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC-CCCccCCccceeEEEEeCCC
Confidence 78999998763 3889999999999999999999999999999999886543 57899999999999999999
Q ss_pred CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140 89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (243)
Q Consensus 89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 168 (243)
+++|++||+|++.+..+|+.|.+|+.+.+++|.........|....|..++....+.. .+..+.|+|+||+.++.++++
T Consensus 80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~g~G~~aey~~v~~~~~~ 158 (371)
T cd08281 80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEI-NHHLGVSAFAEYAVVSRRSVV 158 (371)
T ss_pred CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccc-ccccCcccceeeEEecccceE
Confidence 9999999999988888999999999999999987653322232222211111000000 111123599999999999999
Q ss_pred EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++|+++++++|+++.+...|+|+++.+..++++|++|||.|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a 232 (371)
T cd08281 159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALA 232 (371)
T ss_pred ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH
Confidence 99999999999999999999999877788899999999999999999999999999996699999999988764
No 11
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=100.00 E-value=7.1e-36 Score=268.08 Aligned_cols=225 Identities=50% Similarity=0.905 Sum_probs=189.5
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
+++||+++.+.+++++++++|.|.|.++||+|||+++++|++|++.+.|..+ ..+|.++|||++|+|+++|+++++|++
T Consensus 1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08277 1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP 79 (365)
T ss_pred CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence 4689999998887799999999999999999999999999999999988654 457899999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|++.+..+|++|.+|..+.+++|+...+- ..|...++..++. ..|...+++.+.|+|+||++++.+.++++|+++
T Consensus 80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~-~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l 157 (365)
T cd08277 80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA 157 (365)
T ss_pred CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCccccc-cCCcccccccccccceeeEEEchhheEECCCCC
Confidence 99999999999999999999999999876532 1233222211111 011111122234699999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++++.+.+++.|+|+++.+..++++|++|+|+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~ 225 (365)
T cd08277 158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA 225 (365)
T ss_pred CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 99999999999999999877788899999999999999999999999999997799999998887754
No 12
>PLN02827 Alcohol dehydrogenase-like
Probab=100.00 E-value=6.7e-36 Score=269.73 Aligned_cols=228 Identities=49% Similarity=0.893 Sum_probs=184.6
Q ss_pred CCCCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140 10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89 (243)
Q Consensus 10 ~~~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v 89 (243)
..|....|||+++.++++.+.+++++.|.|+++||+|||++++||++|++++.+.. .+|.++|||++|+|+++|+++
T Consensus 6 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v 82 (378)
T PLN02827 6 SQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGV 82 (378)
T ss_pred cCcccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCC
Confidence 34445679999999888768999999999999999999999999999999887642 468899999999999999999
Q ss_pred CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccCcEE
Q 026140 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV 168 (243)
Q Consensus 90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~ 168 (243)
++|++||+|+..+..+|++|.+|+.+.+++|+..... ..|... ++..++. ..|....++...|+|+||+.++.+.++
T Consensus 83 ~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~ 160 (378)
T PLN02827 83 TEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAV 160 (378)
T ss_pred cccCCCCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheE
Confidence 9999999999999899999999999999999875321 001000 0000000 000000001113699999999999999
Q ss_pred EcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 169 ~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++|+++++++++.+.+.+.++|+++....++++|++|||+|+|++|++++|+|+++|+..|++++++++|++++
T Consensus 161 ~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a 234 (378)
T PLN02827 161 KVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA 234 (378)
T ss_pred ECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 99999999999999889899998777778899999999999999999999999999996688888888887764
No 13
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=100.00 E-value=3.4e-36 Score=269.40 Aligned_cols=216 Identities=35% Similarity=0.598 Sum_probs=184.2
Q ss_pred eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
+|||+++.+++.++++++++.|.|+++||+|||.++++|++|++++.|.++. .+|.++|||++|+|+++|+++++|++|
T Consensus 1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (358)
T TIGR03451 1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND-EFPFLLGHEAAGVVEAVGEGVTDVAPG 79 (358)
T ss_pred CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc-cCCcccccceEEEEEEeCCCCcccCCC
Confidence 5899999999988999999999999999999999999999999998886542 578999999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
|+|++.+..+|+.|.+|..+..++|....... ..+. .+| .......+.|+|+||+.++.+.++++|+++
T Consensus 80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~ 149 (358)
T TIGR03451 80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA 149 (358)
T ss_pred CEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cccccccccccccceEEEehhheEECCCCC
Confidence 99999999999999999999999997532210 0000 001 000000123699999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++|+++.+.+.++|.++.+...+++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 99999999999999998877778899999999999999999999999999996699999999888764
No 14
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=100.00 E-value=4.6e-36 Score=266.07 Aligned_cols=203 Identities=30% Similarity=0.454 Sum_probs=180.1
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.+++. +++++++.|.|.++||+||+.+++||++|.+.+.+.+. ...+|.++|||++|+|+++|+++++|++|
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 79 (339)
T cd08239 1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG 79 (339)
T ss_pred CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence 78999998776 99999999999999999999999999999998876532 22357899999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|++.+..+|+.|.+|+.+++++|..... ..|...+| +|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~ 138 (339)
T cd08239 80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS 138 (339)
T ss_pred CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence 999999999999999999999999976543 13333334 999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++|+.+.+++.|+|+++ ...++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++++
T Consensus 139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 999999999999999976 567889999999999999999999999999994499999998887654
No 15
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=100.00 E-value=7.5e-36 Score=267.76 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=178.4
Q ss_pred CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140 12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
..||+++++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~ 87 (360)
T PLN02586 8 EHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKK 87 (360)
T ss_pred hchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCCc
Confidence 34788999999888777999999999999999999999999999999999876544467899999999999999999999
Q ss_pred cCCCCEEEeecc-CCCCCCccccCCCCCCCCCCCCCC-C---CCCCCCCCccccccCCceeecccccceeeeeEEeccCc
Q 026140 92 VVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI-S---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH 166 (243)
Q Consensus 92 ~~~Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~-~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~ 166 (243)
|++||+|++.+. .+|++|.+|+.+.+++|++..... . .|...+ |+|+||++++.+.
T Consensus 88 ~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~ 148 (360)
T PLN02586 88 FKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMIVVDQHF 148 (360)
T ss_pred cCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEEEEchHH
Confidence 999999986543 579999999999999998754310 0 011112 4999999999999
Q ss_pred EEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 167 ~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
++++|+++++++++.+.+...|+|+++......++|++|+|.|+|++|++++|+|+.+|+ +|++++.++++.
T Consensus 149 ~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~ 220 (360)
T PLN02586 149 VLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKE 220 (360)
T ss_pred eeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchh
Confidence 999999999999999999999999977555667899999999999999999999999999 788887776553
No 16
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=100.00 E-value=1.6e-35 Score=268.53 Aligned_cols=209 Identities=27% Similarity=0.362 Sum_probs=172.6
Q ss_pred eeeeEEeccCCCCeEEEEEecCCCC-------CCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCC
Q 026140 16 QCRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88 (243)
Q Consensus 16 ~~ka~~~~~~~~~~~~~e~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~ 88 (243)
-|||+++.++++ +++++++.|.|+ +|||||||++++||++|++++.|..+ ..+|.++|||++|+|+++|++
T Consensus 2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~ 79 (393)
T TIGR02819 2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD 79 (393)
T ss_pred CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence 389999999887 999999999874 68999999999999999999988653 357899999999999999999
Q ss_pred CCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140 89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA 165 (243)
Q Consensus 89 v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 165 (243)
|++|++||||++.+..+|++|.+|+++.+++|+...... ..|+...| .-.|+|+||+.++..
T Consensus 80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~ 144 (393)
T TIGR02819 80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYA 144 (393)
T ss_pred cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechh
Confidence 999999999999999999999999999999998743210 11210000 001499999999964
Q ss_pred --cEEEcCCCCCh----hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 166 --HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 166 --~~~~ip~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
+++++|++++. .+++.+.+++.++|+++ ...++++|++|+|.|+|++|++++|+|+.+|+..+++++++++|+
T Consensus 145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~ 223 (393)
T TIGR02819 145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL 223 (393)
T ss_pred hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence 79999988653 34667777899999975 567899999999998999999999999999995566677778787
Q ss_pred hcC
Q 026140 240 EIG 242 (243)
Q Consensus 240 ~~~ 242 (243)
+++
T Consensus 224 ~~a 226 (393)
T TIGR02819 224 AQA 226 (393)
T ss_pred HHH
Confidence 765
No 17
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=1e-35 Score=266.06 Aligned_cols=206 Identities=29% Similarity=0.388 Sum_probs=168.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCe-eeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|+++++..++...++++.+.|.+.++||+|||.+++||++|++++.+..+....|. ++|||++|+|+++| .++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G 79 (350)
T COG1063 1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG 79 (350)
T ss_pred CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence 56777777775344677767778999999999999999999999999877766666 99999999999999 77889999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCC--CCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc-CC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DP 172 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~--g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i-p~ 172 (243)
|||++.+..+|++|.+|+.+.+++|++.++-... +...+ |+|+||+.+|.++++.+ |+
T Consensus 80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~-------------------G~~aEyv~vp~~~~~~~~pd 140 (350)
T COG1063 80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGID-------------------GGFAEYVRVPADFNLAKLPD 140 (350)
T ss_pred CEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCC-------------------CceEEEEEeccccCeecCCC
Confidence 9999999999999999999999999955431111 11123 49999999997655554 78
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
+++.+.|++.. +++++|++........++++|+|+|+|++|++++++++.+|+.+||+++++++|+++++
T Consensus 141 ~~~~~~aal~e-pla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~ 210 (350)
T COG1063 141 GIDEEAAALTE-PLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAK 210 (350)
T ss_pred CCChhhhhhcC-hhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH
Confidence 87545555544 99999886445555666779999999999999999999999999999999999999874
No 18
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=100.00 E-value=1.8e-35 Score=263.24 Aligned_cols=206 Identities=22% Similarity=0.357 Sum_probs=173.1
Q ss_pred CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhh-CCCC--CCCCCeeeecceeEEEEEeCCCCC
Q 026140 14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
..++|+++++++++ +++++++.| +.++||||||.+++||++|++++. +... ...+|.++|||++|+|+++ +++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~ 77 (343)
T PRK09880 2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS 77 (343)
T ss_pred cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence 35789999999988 999999987 689999999999999999999875 3322 2357899999999999999 788
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
+|++||+|++.+..+|++|.+|+.+.+++|+.... .|.... +....|+|+||++++.+.++++
T Consensus 78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~ 140 (343)
T PRK09880 78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPY 140 (343)
T ss_pred cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEEC
Confidence 99999999999999999999999999999987553 221000 0000149999999999999999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
|++++++++++. .+++++|+++ ......+|++|+|+|+|++|++++|+|+++|+.+|++++++++|++++
T Consensus 141 P~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a 210 (343)
T PRK09880 141 PEKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA 210 (343)
T ss_pred CCCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH
Confidence 999999876644 4788999976 455667899999999999999999999999997799999999998865
No 19
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=100.00 E-value=1.5e-34 Score=260.35 Aligned_cols=229 Identities=46% Similarity=0.803 Sum_probs=194.1
Q ss_pred CCCceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140 12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 12 ~~~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
.+..+|||+++..++++++++++|.|.|.++||+||++++++|++|.+.+.|... ..+|.++|||++|+|+++|++++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~ 81 (373)
T cd08299 3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTT 81 (373)
T ss_pred cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCcc
Confidence 4557799999999888899999999999999999999999999999999988753 357889999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
|++||+|++.+..+|++|.+|+.+..++|+........|...++..+++ .+|...+++...|+|++|++++.+.++++|
T Consensus 82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP 160 (373)
T cd08299 82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKID 160 (373)
T ss_pred CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeCC
Confidence 9999999998899999999999999999987654222233323222222 123333344345799999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++++++.+.+++.++|+++....++++|++|+|+|+|++|++++++|+.+|+.+|++++++++|++.+
T Consensus 161 ~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a 231 (373)
T cd08299 161 AAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA 231 (373)
T ss_pred CCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 99999999999999999999877888999999999998899999999999999996799999888887654
No 20
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=100.00 E-value=1.2e-34 Score=257.02 Aligned_cols=199 Identities=24% Similarity=0.314 Sum_probs=175.0
Q ss_pred EEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 20 AIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 20 ~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
+.+.+++. .++++++|.|.|+++||+|||++++||++|.+++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G 81 (329)
T TIGR02822 2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG 81 (329)
T ss_pred eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence 45555553 38889999999999999999999999999999998876544457899999999999999999999999
Q ss_pred CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
|+|++.+. .+|+.|.+|..+.+++|+...+ .|...+| +|+||+.++.+.++++|+++
T Consensus 82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~ 139 (329)
T TIGR02822 82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTGY 139 (329)
T ss_pred CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCCC
Confidence 99976653 5799999999999999987654 3433334 99999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++++.+++.+.|+|+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|++++
T Consensus 140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a 205 (329)
T TIGR02822 140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLA 205 (329)
T ss_pred CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence 9999999999999999976 46889999999999999999999999999999 799999999988765
No 21
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=100.00 E-value=4.4e-34 Score=255.39 Aligned_cols=202 Identities=25% Similarity=0.321 Sum_probs=164.3
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++..++.+++++++|.|+|.++||||||++++||++|.++++|.++. ..+|.++|||++|+|+++|++ ++|+
T Consensus 1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~ 79 (355)
T cd08230 1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS 79 (355)
T ss_pred CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence 688998865434899999999999999999999999999999999886532 246899999999999999999 9999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
+||+|+..+..+|+.|.+|+.+.+++|+...+. ..|.. .+ |+|+||++++.+.++++|+
T Consensus 80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~ 139 (355)
T cd08230 80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP 139 (355)
T ss_pred CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence 999999998889999999999999999865421 01211 12 4999999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHH------HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC---CchhhhcC
Q 026140 173 TVPPNRACLLSCGVSTGVGAAW------RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIG 242 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~------~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~---~~~~~~~~ 242 (243)
+++ +.+ .+..++.+++.++. ...+.++|++|+|+|+|++|++++|+|+++|+ +|+++++ +++|++++
T Consensus 140 ~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~ 215 (355)
T cd08230 140 SLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIV 215 (355)
T ss_pred CCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHH
Confidence 999 443 33445555444322 12235789999999999999999999999999 8999987 56776654
No 22
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=100.00 E-value=4.3e-34 Score=254.53 Aligned_cols=199 Identities=21% Similarity=0.197 Sum_probs=165.1
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC----CCCCeeeecceeEEEEEeCCCCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
|..|+++++++++ ++++|++.|. +++||||||++++||++|+++++|.+.. ..+|.++|||++|+|+++|.+
T Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-- 76 (341)
T cd08237 1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-- 76 (341)
T ss_pred CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence 4678999999997 9999999994 9999999999999999999999886532 357999999999999998764
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
+|++||+|++.+..+|+ |..| ...++|....+ .|...+ |+|+||++++.++++++
T Consensus 77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~-------------------G~~aey~~v~~~~~~~v 131 (341)
T cd08237 77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYD-------------------GFMQDYVFLPPDRLVKL 131 (341)
T ss_pred ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCC-------------------CceEEEEEEchHHeEEC
Confidence 69999999998887777 4455 35678876543 222223 49999999999999999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHH--hcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcCC
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~~ 243 (243)
|+++++++|+++. +++++|+++.. ....++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++
T Consensus 132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~ 206 (341)
T cd08237 132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFS 206 (341)
T ss_pred CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHh
Confidence 9999999887665 88888887643 3456889999999999999999999986 66558999999999988753
No 23
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=100.00 E-value=5.9e-34 Score=252.14 Aligned_cols=179 Identities=30% Similarity=0.344 Sum_probs=159.5
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++.+.+.+ ++++|++.|.|.+|||||||++++||+.|..+++|. .+...+|.++|.|++|+|+++|+++++|+
T Consensus 1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~ 80 (326)
T COG0604 1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK 80 (326)
T ss_pred CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence 688999998876 778999999999999999999999999999999987 34457999999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+... .. + .+ |+|+||+.+|++.++++|++
T Consensus 81 ~GdrV~~~~-~~------------------------~--~~-------------------G~~AEy~~v~a~~~~~~P~~ 114 (326)
T COG0604 81 VGDRVAALG-GV------------------------G--RD-------------------GGYAEYVVVPADWLVPLPDG 114 (326)
T ss_pred CCCEEEEcc-CC------------------------C--CC-------------------CcceeEEEecHHHceeCCCC
Confidence 999998653 00 0 12 49999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++||++++.+.|||+++....++++|++|||+|+ |++|++++|+|+++|+ .++++.+++++.+++
T Consensus 115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~ 183 (326)
T COG0604 115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELL 183 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHH
Confidence 9999999999999999999988899999999999997 9999999999999998 677777777766543
No 24
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=1.9e-33 Score=253.56 Aligned_cols=199 Identities=25% Similarity=0.349 Sum_probs=166.4
Q ss_pred EEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140 20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99 (243)
Q Consensus 20 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv 99 (243)
+++.+..+.+++.+++.|.|+++||+|||.+++||++|++++.|.+....+|.++|||++|+|+++|+++++|++||+|+
T Consensus 10 ~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~ 89 (375)
T PLN02178 10 WAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVG 89 (375)
T ss_pred EEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEEE
Confidence 44444444588889999999999999999999999999999988654345689999999999999999999999999998
Q ss_pred eeccC-CCCCCccccCCCCCCCCCCCCCCC----CCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 100 PHFLA-DCTECVGCRSKKGNLCSAFPFKIS----PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 100 ~~~~~-~~~~c~~c~~~~~~~~~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
+.+.. +|++|.+|+.+.+++|+...+... .|...+ |+|+||++++.+.++++|+++
T Consensus 90 ~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP~~l 150 (375)
T PLN02178 90 VGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIPDGL 150 (375)
T ss_pred EcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECCCCC
Confidence 66544 699999999999999987653100 111112 499999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
++++++.+.+...|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|+++++++++
T Consensus 151 s~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~ 214 (375)
T PLN02178 151 PSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEK 214 (375)
T ss_pred CHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHH
Confidence 999999999999999987644332 3689999999999999999999999999 78888877554
No 25
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=100.00 E-value=2.4e-33 Score=251.20 Aligned_cols=210 Identities=23% Similarity=0.321 Sum_probs=177.4
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
..++|+++.+++.++.+++++.|.|+++||+|||.+++||++|++++.+.+....+|.++|||++|+|+++|+++++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~ 87 (357)
T PLN02514 8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV 87 (357)
T ss_pred ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence 45899999999999999999999999999999999999999999998886544457889999999999999999999999
Q ss_pred CCEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 95 GDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 95 Gd~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
||+|++.+. ..|++|.+|+.+.+++|+...... .+....| ....|+|+||++++.+.++++|++
T Consensus 88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~iP~~ 152 (357)
T PLN02514 88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSY-NDVYTDG--------------KPTQGGFASAMVVDQKFVVKIPEG 152 (357)
T ss_pred CCEEEEcCccccCCCChhHhCCCcccCCCccccc-cccccCC--------------ccCCCccccEEEEchHHeEECCCC
Confidence 999986543 469999999999999998753210 0000001 001249999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+++++++.+++.+.|+|+++......++|++|+|+|+|++|++++|+|+.+|+ ++++++++++++.
T Consensus 153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~ 218 (357)
T PLN02514 153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKRE 218 (357)
T ss_pred CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence 99999999999999999987655556899999999889999999999999999 7888887776653
No 26
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=100.00 E-value=2.9e-33 Score=249.66 Aligned_cols=198 Identities=27% Similarity=0.474 Sum_probs=173.4
Q ss_pred EEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CCCCCCCeeeecceeEEEEEeCCCCCccCCCCEE
Q 026140 20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98 (243)
Q Consensus 20 ~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~V 98 (243)
+++.+++++++++++|.|.|+++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|+++..+ +||+|
T Consensus 2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV 80 (349)
T TIGR03201 2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV 80 (349)
T ss_pred ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence 567778877899999999999999999999999999999887443 3234568999999999999999999887 99999
Q ss_pred EeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC------
Q 026140 99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------ 172 (243)
Q Consensus 99 v~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~------ 172 (243)
++.+..+|++|.+|+.+.+++|..... .|...+ |+|+||+.++.+.++++|+
T Consensus 81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~-------------------G~~ae~~~v~~~~~~~ip~~~~~~~ 138 (349)
T TIGR03201 81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQ-------------------GGFASHIVVPAKGLCVVDEARLAAA 138 (349)
T ss_pred EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCC-------------------CcccceEEechHHeEECCccccccc
Confidence 999999999999999999999976443 232223 3999999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++++++.+.+.+.++|+++ ...++++|++|+|+|+|++|++++|+|+++|+ +|++++++++|++++
T Consensus 139 ~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 139 GLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 899999998888999999976 45788999999999999999999999999999 899999999887764
No 27
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=100.00 E-value=1.2e-32 Score=247.17 Aligned_cols=223 Identities=44% Similarity=0.772 Sum_probs=193.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
+||+++.+.++++++++++.|.|.++||+|++.++++|+.|++.+.+... ..+|.++|||++|+|+++|++++.+++||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd 79 (365)
T cd05279 1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD 79 (365)
T ss_pred CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence 47899998887799999999999999999999999999999999887654 35678999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|++.+..+|+.|.+|..+.+++|....+....|...+|..++.- +|.+.+|+.+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~ 158 (365)
T cd05279 80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL 158 (365)
T ss_pred EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence 999998899999999999999999887765445555555444432 3444556666689999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+.+.+.++|.++.+..++++|++|||+|+|++|++++++|+.+|+..|++++++++|.+.
T Consensus 159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~ 223 (365)
T cd05279 159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEK 223 (365)
T ss_pred HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 99999998999999988888899999999999889999999999999999668888878877664
No 28
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-32 Score=244.68 Aligned_cols=200 Identities=27% Similarity=0.445 Sum_probs=171.3
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++++++. +++++.+.|.| .++||+|||.++++|++|...+..... ..+|.++|||++|+|+++|+++++|++|
T Consensus 1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~vG 78 (347)
T PRK10309 1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-HYYPITLGHEFSGYVEAVGSGVDDLHPG 78 (347)
T ss_pred CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-CCCCcccccceEEEEEEeCCCCCCCCCC
Confidence 68999998886 99999999997 589999999999999999875432111 1357899999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|++.+..+|+.|.+|..+.+++|+.... .|...+| +|++|+.++.+.++++|++++
T Consensus 79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s 136 (347)
T PRK10309 79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP 136 (347)
T ss_pred CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence 999999999999999999999999976443 3333333 999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++++. .+.+++.+ .+....++|++|+|+|+|++|++++|+|+.+|++.|++++++++|++++
T Consensus 137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 99998774 55667776 4667889999999999999999999999999995588999998887754
No 29
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=100.00 E-value=5.3e-32 Score=243.00 Aligned_cols=225 Identities=36% Similarity=0.627 Sum_probs=184.8
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
|+|||+++.+++.++++++.+.|.+.++||+|||.++++|++|..++.+.++ ...|.++|+|++|+|+++|+++.+|++
T Consensus 1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~ 79 (365)
T cd08278 1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP 79 (365)
T ss_pred CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence 5799999999877789999999999999999999999999999999888654 346889999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCce-eecccccceeeeeEEeccCcEEEcCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
||+|++.+. .|++|.+|+.+..++|.........|...+|.-.+.+.+|-+ ..+++..|+|++|++++.+.++++|++
T Consensus 80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~ 158 (365)
T cd08278 80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD 158 (365)
T ss_pred CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence 999998764 899999999999999986653222222222100000000000 001223469999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+++.+.||+.++.+...+++|++|+|+|+|++|++++++|+++|+..+++++++++|.++
T Consensus 159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~ 226 (365)
T cd08278 159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLEL 226 (365)
T ss_pred CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 99999999999999999987788889999999999889999999999999999779999988887764
No 30
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=100.00 E-value=7.9e-32 Score=241.01 Aligned_cols=209 Identities=31% Similarity=0.428 Sum_probs=179.9
Q ss_pred eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc------
Q 026140 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------ 91 (243)
Q Consensus 18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~------ 91 (243)
||+++.++++.+++++++.|.|+++||+|||.++++|+.|...+.|.++...+|.++|||++|+|+++|+++++
T Consensus 2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~ 81 (361)
T cd08231 2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP 81 (361)
T ss_pred eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence 78999999867999999999999999999999999999999998887653467889999999999999999986
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceeecccccceeeeeEEeccC-cEEE
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVK 169 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~-~~~~ 169 (243)
|++||+|++.+..+|+.|.+|+.+.+++|+..+.. |... .+.. ...|+|++|++++.+ .+++
T Consensus 82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~---~~~~~~~~~-------------~~~g~~a~~~~v~~~~~~~~ 145 (361)
T cd08231 82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKY---GHEASCDDP-------------HLSGGYAEHIYLPPGTAIVR 145 (361)
T ss_pred cCCCCEEEEcccCCCCCChhHhCcCccccccchhc---cccccccCC-------------CCCcccceEEEecCCCceEE
Confidence 99999999999999999999999999999887642 2111 0000 002599999999986 7999
Q ss_pred cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+|+++++.+++++++.+.|||.++.+.....+|++|||+|+|++|++++++|+.+|+++|+++++++++.+++
T Consensus 146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 9999999999998889999999876656566999999999899999999999999997799999888876653
No 31
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=100.00 E-value=2.3e-31 Score=235.69 Aligned_cols=202 Identities=26% Similarity=0.402 Sum_probs=178.3
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.+++.++++++++.|.+.++||+||+.++++|++|...+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd 80 (333)
T cd08296 1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD 80 (333)
T ss_pred CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence 69999999965699999999999999999999999999999999888654445688999999999999999999999999
Q ss_pred EEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 97 ~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
+|++.+ ...|+.|.+|..++++.|+..+. .|...+ |+|++|+.++...++++|++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~-------------------g~~a~~~~v~~~~~~~lp~~~~ 138 (333)
T cd08296 81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRD-------------------GGYAEYMLAPAEALARIPDDLD 138 (333)
T ss_pred EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccC-------------------CcceeEEEEchhheEeCCCCCC
Confidence 998744 57899999999999999987764 233223 3899999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++.+.+.+.++|+++. ...+.++++|+|+|+|++|++++++|+++|+ +|+++++++++++.+
T Consensus 139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~ 203 (333)
T cd08296 139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLA 203 (333)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence 9999999999999999764 4589999999999999999999999999999 899999988777653
No 32
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=100.00 E-value=2.7e-31 Score=240.24 Aligned_cols=219 Identities=29% Similarity=0.428 Sum_probs=182.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.++++ +++++++.|.| .+++|+||+.+++||++|..++.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 79 (386)
T cd08283 1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG 79 (386)
T ss_pred CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence 68999998865 99999999988 49999999999999999999998877656678999999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCC-CCCCCCCCCCccccccCCceeeccc--ccceeeeeEEeccC--cEEEc
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTSRFKDLRGETIHHFV--SVSSFSEYTVLDIA--HVVKV 170 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~--~~g~~~~~~~v~~~--~~~~i 170 (243)
|+|++.+..+|++|.+|..+.+++|+.+... .+++.. |....+ ..| +.++. ..|+|++|++++.+ .++++
T Consensus 80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~--~~~~~~~~~g~~~~~~~v~~~~~~~~~l 154 (386)
T cd08283 80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLY--GHAGAG-IFG--YSHLTGGYAGGQAEYVRVPFADVGPFKI 154 (386)
T ss_pred CEEEEcCcCCCCCChhhcCCCcccCCCccccccccccc--cccccc-ccc--cccccCCCCCeeEEEEEcccccCeEEEC
Confidence 9999998889999999999999999987643 111110 000000 000 00000 13699999999987 89999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
|+++++++++.+++...|+|+++ ....+.+|++|+|+|+|++|++++++|+++|+.+++++++++++.+++
T Consensus 155 p~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~ 225 (386)
T cd08283 155 PDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMA 225 (386)
T ss_pred CCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHH
Confidence 99999999999998999999987 778899999999998899999999999999985699999998887764
No 33
>PRK10083 putative oxidoreductase; Provisional
Probab=100.00 E-value=2.2e-31 Score=235.80 Aligned_cols=201 Identities=25% Similarity=0.472 Sum_probs=175.1
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.+++. +++++++.|.|.++||+||+.++++|++|+..+.+..+...+|.++|||++|+|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd 79 (339)
T PRK10083 1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE 79 (339)
T ss_pred CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence 68999998886 99999999999999999999999999999999888765445689999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|+..+..+|+.|.+|..+.+++|..+.. .+...+ |+|++|+.++...++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~ 137 (339)
T PRK10083 80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAIAD 137 (339)
T ss_pred EEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCCCH
Confidence 99999999999999999999999965442 121112 49999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcC
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~ 242 (243)
++++. ...+.++|. +....++++|++|+|+|+|++|++++|+|+. +|+..+++++++++|.+++
T Consensus 138 ~~a~~-~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~ 202 (339)
T PRK10083 138 QYAVM-VEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA 202 (339)
T ss_pred HHHhh-hchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 88764 457788885 5677889999999999999999999999996 6996688898888887654
No 34
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.98 E-value=2.9e-31 Score=236.52 Aligned_cols=205 Identities=28% Similarity=0.325 Sum_probs=177.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.+++. +++++.+.|.+.++||+|||+++++|++|.+.+.+.+.....|.++|||++|+|+++|+++++|++||
T Consensus 1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd 79 (351)
T cd08285 1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD 79 (351)
T ss_pred CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence 78999999886 88999999999999999999999999999998877655456789999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCCC
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV 174 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~~ 174 (243)
+|++.+..+|+.|..|..+..++|.........+...+ |+|++|++++.+ .++++|+++
T Consensus 80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~~~ 140 (351)
T cd08285 80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPDGL 140 (351)
T ss_pred EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCCCC
Confidence 99998888999999999999999976431000011112 499999999874 899999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++++.++..+.|+|++ .+...+++|++|||+|+|++|++++|+|+.+|+..+++++++++|.+++
T Consensus 141 ~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 207 (351)
T cd08285 141 TDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA 207 (351)
T ss_pred CHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 999999998899999997 4778899999999998899999999999999997799999888877653
No 35
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.98 E-value=3.3e-31 Score=236.18 Aligned_cols=201 Identities=28% Similarity=0.446 Sum_probs=174.0
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-C----------CCCCeeeecceeEEEEEe
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-P----------AVFPRILGHEAIGVVESV 85 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~----------~~~p~vlG~e~~G~Vv~v 85 (243)
|||+++.+++. +++++++.|.|.++||+||+.++++|++|...+.+... . ..+|.++|||++|+|+++
T Consensus 1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v 79 (351)
T cd08233 1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV 79 (351)
T ss_pred CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence 68999998876 99999999999999999999999999999887653211 0 136889999999999999
Q ss_pred CCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEecc
Q 026140 86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (243)
Q Consensus 86 G~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 164 (243)
|+++++|++||+|+..+..+|+.|.+|..+..++|....+ .|.. .+ |+|++|+.++.
T Consensus 80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~a~~~~~~~ 137 (351)
T cd08233 80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG-------------------GGFAEYVVVPA 137 (351)
T ss_pred CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC-------------------CceeeEEEech
Confidence 9999999999999999999999999999999999975542 2221 12 49999999999
Q ss_pred CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++++|+++++++++.+ .+..++|.++ ...++++|++|+|+|+|++|++++|+|+.+|+++|+++++++++.+++
T Consensus 138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 999999999999998876 5778999976 778899999999999999999999999999997799999888887653
No 36
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.97 E-value=1e-30 Score=231.81 Aligned_cols=204 Identities=32% Similarity=0.462 Sum_probs=179.2
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.++++ +.+.+.+.|.| .++||+||+.++++|+.|...+.+.++...+|.++|+|++|+|+++|+++++|++|
T Consensus 1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (347)
T cd05278 1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG 79 (347)
T ss_pred CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence 58999998887 89999999999 89999999999999999999988876656778999999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~ 173 (243)
|+|++.+..+|+.|.+|..+.+.+|+......+.+...+ |+|++|++++.+ .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~lP~~ 140 (347)
T cd05278 80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID-------------------GGQAEYVRVPYADMNLAKIPDG 140 (347)
T ss_pred CEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC-------------------CeeeEEEEecchhCeEEECCCC
Confidence 999999999999999999999999977654322222222 499999999987 89999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+++.+.|||+++ ...++++|++|||.|+|.+|++++|+|+.+|+.+++++++++++.++
T Consensus 141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~ 207 (347)
T cd05278 141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL 207 (347)
T ss_pred CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 99999999999999999976 67889999999998889999999999999997578888877776554
No 37
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.97 E-value=1.5e-30 Score=229.79 Aligned_cols=201 Identities=30% Similarity=0.429 Sum_probs=180.2
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.++++++++++.+.|.+.++|++|+++++++|+.|+..+.+..+...+|.++|+|++|+|+++|+++..+++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~ 80 (334)
T PRK13771 1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD 80 (334)
T ss_pred CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence 68999999998899999999999999999999999999999998887665556788999999999999999998999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|++.+..+|+.|.+|..+.+++|..... .|.... |+|++|+.++.+.++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~ 138 (334)
T PRK13771 81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELD-------------------GFFAEYAKVKVTSLVKVPPNVSD 138 (334)
T ss_pred EEEECCCCCCcCChhhcCCCcccCccccc---cccccC-------------------ceeeeeeecchhceEECCCCCCH
Confidence 99998888999999999999999988653 332223 39999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.+++.+.+.+.++|.++... .+.++++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.
T Consensus 139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~ 202 (334)
T PRK13771 139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKI 202 (334)
T ss_pred HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 99999999999999976554 8899999999998 9999999999999999 89999988877654
No 38
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.97 E-value=1.4e-30 Score=230.58 Aligned_cols=202 Identities=33% Similarity=0.482 Sum_probs=179.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++++++.++.+++.+.|.+.++||+||+.++++|+.|...+.+.+. ...+|.++|+|++|+|+++|+++.+|+
T Consensus 1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~ 80 (340)
T cd05284 1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK 80 (340)
T ss_pred CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence 68999998877799999999999999999999999999999998877553 345688999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|++.+...|+.|.+|+.+.+++|+.... .|...+| +|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~ 138 (340)
T cd05284 81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG 138 (340)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence 99999999989999999999999999998875 3433344 9999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+++.+.|||.++... ..+.++++|||+|+|++|++++++|+.+| . +|+++++++++.+.
T Consensus 139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~ 207 (340)
T cd05284 139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKL 207 (340)
T ss_pred CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHH
Confidence 99999999999999999987655 46788999999999889999999999999 6 89999888877654
No 39
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.97 E-value=7.5e-30 Score=224.25 Aligned_cols=201 Identities=36% Similarity=0.555 Sum_probs=178.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++..+++++.+++++.|.+.++||+|+++++++|+.|...+.+.++....|.++|+|++|+|+++|++++.|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd 80 (332)
T cd08259 1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD 80 (332)
T ss_pred CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence 68999987566699999999999999999999999999999999888766556788999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|++....+|+.|.+|..+.+++|+... ..|.... |+|++|++++...++++|+++++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~ 138 (332)
T cd08259 81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVD-------------------GGFAEYVKVPERSLVKLPDNVSD 138 (332)
T ss_pred EEEECCCCCCcCChhhhCCCcccCCCcc---ccccccC-------------------CeeeeEEEechhheEECCCCCCH
Confidence 9999999999999999999999998642 2332223 49999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+++.+.++|+++.. ..+.++++++|+|+ |++|++++++++.+|+ +|+++.+++++.+.
T Consensus 139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~ 202 (332)
T cd08259 139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKI 202 (332)
T ss_pred HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 9999999999999998765 88899999999998 9999999999999999 89998888776543
No 40
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.97 E-value=8.8e-30 Score=226.17 Aligned_cols=202 Identities=34% Similarity=0.504 Sum_probs=180.5
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
||||++.+++.++++++.+.|.+.++||+|++.++++|+.|...+.+..+...+|.++|+|++|.|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd 80 (345)
T cd08260 1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD 80 (345)
T ss_pred CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence 79999998887899999999999999999999999999999999888766556788999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCCC
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV 174 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~~ 174 (243)
+|+..+..+|++|.+|..+..++|+.... .+...+ |+|++|+.++.. .++++|+++
T Consensus 81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~~iP~~~ 138 (345)
T cd08260 81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHP-------------------GSFAEYVAVPRADVNLVRLPDDV 138 (345)
T ss_pred EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCC-------------------CcceeEEEcccccCceEECCCCC
Confidence 99987778999999999999999987643 222223 399999999975 899999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++++.+.+...+||+++....++.++++|+|+|+|++|++++++|+.+|+ +|+++++++++.+.
T Consensus 139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~ 204 (345)
T cd08260 139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLEL 204 (345)
T ss_pred CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 9999999998999999987777889999999999999999999999999999 89999888877654
No 41
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.97 E-value=6.7e-30 Score=229.03 Aligned_cols=222 Identities=44% Similarity=0.686 Sum_probs=182.9
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.+++.++++++++.|.+.++||+||+.++++|+.|..++.+.++ ..+|.++|+|++|+|+++|+++..|++||
T Consensus 1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd 79 (363)
T cd08279 1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD 79 (363)
T ss_pred CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence 69999999988899999999999999999999999999999998888655 35678899999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|+..+..+|++|.+|..+..++|+..... -.|..+++..++. ..|.+.+...+.|+|++|+.++.+.++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~ 157 (363)
T cd08279 80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQLPDGTRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL 157 (363)
T ss_pred EEEECCCCCCCCChhhcCCCcccCcccccc-cccccCCCccccc-ccCccccccccCccceeeEEeccccEEECCCCCCh
Confidence 999999999999999999999999865321 0000111100000 00111111122369999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++++.+.+.++|.++.+..++.+|++|+|+|+|++|++++++++.+|+.+|+++++++++.++
T Consensus 158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~ 222 (363)
T cd08279 158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLEL 222 (363)
T ss_pred HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHH
Confidence 99999999999999988888889999999999889999999999999999559999888877654
No 42
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.97 E-value=6.1e-30 Score=227.89 Aligned_cols=202 Identities=27% Similarity=0.447 Sum_probs=174.2
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC---------CCCCeeeecceeEEEEEeCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE 87 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---------~~~p~vlG~e~~G~Vv~vG~ 87 (243)
|||+++++++. +++++.+.|+|.+++|+||++++++|+.|..++.|.... ..+|.++|+|++|+|+++|+
T Consensus 1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~ 79 (350)
T cd08256 1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE 79 (350)
T ss_pred CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence 68999998886 999999999999999999999999999999988775311 14677899999999999999
Q ss_pred CCC--ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140 88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA 165 (243)
Q Consensus 88 ~v~--~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 165 (243)
.++ .|++||+|+..+..+|++|..|..+.+++|..... .|... ...|+|++|+.++.+
T Consensus 80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-----------------~~~g~~~~~~~~~~~ 139 (350)
T cd08256 80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQN-----------------NVNGGMAEYMRFPKE 139 (350)
T ss_pred CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeecc-----------------CCCCcceeeEEcccc
Confidence 999 89999999999999999999999999999975432 22210 012499999999987
Q ss_pred -cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 166 -HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 166 -~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.++++|+++++++++.+ ..+.++|.++ +..++++|++|+|.|+|.+|++++++|+++|+..+++++++++|.++
T Consensus 140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 214 (350)
T cd08256 140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLAL 214 (350)
T ss_pred cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHH
Confidence 57899999999999988 7899999976 78889999999997789999999999999999678888888877654
No 43
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.97 E-value=5.3e-30 Score=232.01 Aligned_cols=207 Identities=20% Similarity=0.158 Sum_probs=175.5
Q ss_pred CCceeeeEEecc--CCC---CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC----------CCCCCeeeecc
Q 026140 13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFPRILGHE 77 (243)
Q Consensus 13 ~~~~~ka~~~~~--~~~---~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p~vlG~e 77 (243)
.|.+|||+++.. .+. .+++++++.|.++++||+||+.+++||++|+..+.+... ....+.++|||
T Consensus 9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e 88 (393)
T cd08246 9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD 88 (393)
T ss_pred CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence 577899999863 222 278889999999999999999999999999988766421 01123589999
Q ss_pred eeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeeccccccee
Q 026140 78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSF 156 (243)
Q Consensus 78 ~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~ 156 (243)
++|+|+++|+++++|++||+|++.+...|+.|..|..+..++|....+ .|.. .+ |+|
T Consensus 89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~~-------------------g~~ 146 (393)
T cd08246 89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYETNY-------------------GSF 146 (393)
T ss_pred eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccCCC-------------------Ccc
Confidence 999999999999999999999999999999999999999999976543 3322 12 499
Q ss_pred eeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHh--cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 157 ~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
++|++++...++++|+++++++++.+.+.+.|||+++... +++++|++|+|+|+ |++|++++++|+++|+ ++++++
T Consensus 147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~ 225 (393)
T cd08246 147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV 225 (393)
T ss_pred eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999999999999999999999999987544 67899999999998 9999999999999999 788888
Q ss_pred CCchhhhcC
Q 026140 234 VISEKFEIG 242 (243)
Q Consensus 234 ~~~~~~~~~ 242 (243)
++++|.+++
T Consensus 226 ~s~~~~~~~ 234 (393)
T cd08246 226 SSEEKAEYC 234 (393)
T ss_pred CCHHHHHHH
Confidence 888887654
No 44
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.97 E-value=4.7e-30 Score=225.58 Aligned_cols=181 Identities=22% Similarity=0.304 Sum_probs=147.8
Q ss_pred eeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecC-hhhhhhhhCCCCC---CCCCeeeecceeEEEEEeCCCCCc
Q 026140 16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 16 ~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
++||+++.+++. +++++.+.|.|+++||||||++++|| ++|++++.|.++. ..+|.++|||++|+|+++|+++ +
T Consensus 1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~ 78 (308)
T TIGR01202 1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G 78 (308)
T ss_pred CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence 478999998876 99999999999999999999999996 7999988886543 3579999999999999999998 6
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
|++||+|+.. +..|..|.. | .. |+|+||+.++.+.++++|
T Consensus 79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~-------------------G~~aey~~v~~~~~~~ip 118 (308)
T TIGR01202 79 FRPGDRVFVP----GSNCYEDVR---------------G--LF-------------------GGASKRLVTPASRVCRLD 118 (308)
T ss_pred CCCCCEEEEe----Ccccccccc---------------c--cC-------------------CcccceEEcCHHHceeCC
Confidence 9999999863 222322210 0 01 499999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++++. +++. ...|+|+++.. . ..++++++|+|+|++|++++|+|+++|+..|++++.+++|++.+
T Consensus 119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 9999754 4444 57899997643 3 34689999999999999999999999996677888888887654
No 45
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.97 E-value=1.6e-29 Score=223.57 Aligned_cols=201 Identities=25% Similarity=0.411 Sum_probs=175.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||++++++++...+++.+.|.|.++||+|||+++++|++|...+.+..+. ..|.++|||++|+|+++|+++.+|++||
T Consensus 1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (338)
T PRK09422 1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD 79 (338)
T ss_pred CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence 789999998874448999999999999999999999999999988776543 3467899999999999999999999999
Q ss_pred EEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 97 ~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
+|++.+ ..+|+.|.+|..+.+++|..... .|...+| +|++|+.++.+.++++|++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~ 137 (338)
T PRK09422 80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD 137 (338)
T ss_pred EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence 998654 56899999999999999976542 2333334 999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~~ 242 (243)
+.+++.+.+.+.|+|+++ ..+++++|++|||+|+|++|++++++|+. +|+ +|+++++++++.+.+
T Consensus 138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~ 203 (338)
T PRK09422 138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALA 203 (338)
T ss_pred HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHH
Confidence 999999999999999976 77889999999999999999999999998 599 899999988887654
No 46
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.97 E-value=1.3e-29 Score=225.67 Aligned_cols=203 Identities=29% Similarity=0.441 Sum_probs=177.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC------------CCCCCeeeecceeEEEEE
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES 84 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~vlG~e~~G~Vv~ 84 (243)
|||+++..++.++++++++.|++.++||+|++.++++|++|+..+.+.++ ...+|.++|+|++|+|++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~ 80 (350)
T cd08240 1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA 80 (350)
T ss_pred CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence 78999998888789999999999999999999999999999998877543 123567899999999999
Q ss_pred eCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140 85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (243)
Q Consensus 85 vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 164 (243)
+|++++++++||+|++.+...|+.|.+|..+.+++|....+. |.... |+|++|+.++.
T Consensus 81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------g~~~~~~~~~~ 138 (350)
T cd08240 81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRAL---GIFQD-------------------GGYAEYVIVPH 138 (350)
T ss_pred eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCce---eeecc-------------------CcceeeEEecH
Confidence 999999999999999999999999999999999999765432 22122 48999999999
Q ss_pred CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+.++++|+++++.+++.+.+.+.|||+++.......++++|+|+|+|++|++++|+|+.+|+++|++++++++|.+.
T Consensus 139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~ 215 (350)
T cd08240 139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEA 215 (350)
T ss_pred HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 99999999999999999999999999987666656689999999889999999999999999778888888877654
No 47
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.97 E-value=1.6e-29 Score=230.41 Aligned_cols=194 Identities=20% Similarity=0.239 Sum_probs=157.0
Q ss_pred ceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhh-hCCCCC------CCCCeeeecceeEEEEEeCC
Q 026140 15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP------AVFPRILGHEAIGVVESVGE 87 (243)
Q Consensus 15 ~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~------~~~p~vlG~e~~G~Vv~vG~ 87 (243)
|+|||+++.++++ ++++++|.|.|.++||+|||.+++||++|++++ .+.... ..+|.++|||++|+|+++|+
T Consensus 1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~ 79 (410)
T cd08238 1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK 79 (410)
T ss_pred CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence 5689999999986 999999999999999999999999999999976 453211 24688999999999999999
Q ss_pred CCC-ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC-
Q 026140 88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA- 165 (243)
Q Consensus 88 ~v~-~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~- 165 (243)
+++ +|++||+|++.+...|+.|..|.. .|...+ |+|+||++++.+
T Consensus 80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~-------------------G~~aey~~v~~~~ 126 (410)
T cd08238 80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYP-------------------GGLATYHIIPNEV 126 (410)
T ss_pred CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCC-------------------CcceEEEEecHHh
Confidence 998 699999999988888988887731 122223 399999999986
Q ss_pred ---cEEEcCCCCChhhhccc-chhh-HhHHHHH--------HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcC--CCeE
Q 026140 166 ---HVVKVDPTVPPNRACLL-SCGV-STGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG--ATRI 229 (243)
Q Consensus 166 ---~~~~ip~~~~~~~aa~~-~~~~-~ta~~~l--------~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g--~~~v 229 (243)
.++++|+++++++++++ ++.. .+++.++ .+..++++|++|+|+|+ |++|++++|+|+++| +.+|
T Consensus 127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V 206 (410)
T cd08238 127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL 206 (410)
T ss_pred ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence 68999999999998865 2111 1233322 24567899999999985 999999999999975 4579
Q ss_pred EEEcCCchhhhcC
Q 026140 230 IGVDVISEKFEIG 242 (243)
Q Consensus 230 i~~~~~~~~~~~~ 242 (243)
++++++++|++++
T Consensus 207 i~~~~~~~r~~~a 219 (410)
T cd08238 207 VVTDVNDERLARA 219 (410)
T ss_pred EEEcCCHHHHHHH
Confidence 9999999988765
No 48
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.97 E-value=3.3e-29 Score=222.25 Aligned_cols=207 Identities=23% Similarity=0.318 Sum_probs=177.1
Q ss_pred eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (243)
Q Consensus 18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~ 97 (243)
|+|++++.+..+++++++.|.|.++||+||++++++|+.|...+.+......+|.++|||++|+|+++|+++.+|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~ 80 (337)
T cd05283 1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR 80 (337)
T ss_pred CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence 57888988888999999999999999999999999999999998886655567889999999999999999999999999
Q ss_pred EE-eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 98 Vv-~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
|+ .....+|++|.+|.++..++|...... +.|....+ ....|+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~ 145 (337)
T cd05283 81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVT-YNGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS 145 (337)
T ss_pred EEEecCCCCCCCCccccCCchhcCcchhhc-ccccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence 97 545668999999999999999876532 11111000 111259999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+.+.+.+||.++ ....+.+|++++|.|+|++|++++++++.+|+ +++++++++++.+.
T Consensus 146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~ 208 (337)
T cd05283 146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKED 208 (337)
T ss_pred HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence 99999999999999975 45568999999998889999999999999999 89999988877654
No 49
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.97 E-value=4.6e-29 Score=224.75 Aligned_cols=211 Identities=27% Similarity=0.398 Sum_probs=174.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
||++++.+++. ++++++|.|.| +++||+|||+++++|+.|+.++.|.++ ..+|.++|||++|+|+++|++++.|++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G 78 (375)
T cd08282 1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG 78 (375)
T ss_pred CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence 58899988875 99999999996 799999999999999999999988665 3468899999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~ 173 (243)
|+|+..+..+|+.|..|+.+..++|...... +.+. ..|.... ....|+|++|+.++.+ .++++|++
T Consensus 79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~-~~~~-~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~~ 146 (375)
T cd08282 79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPG-RAGG-AYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPDR 146 (375)
T ss_pred CEEEEeCCCCCCCCHHHHCcCcccCCCCCcc-cccc-ccccccc----------CCCCCeeeeEEEeecccCcEEECCCC
Confidence 9999999999999999999999999753221 0000 0000000 0001599999999976 89999999
Q ss_pred CChh---hhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 174 VPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 174 ~~~~---~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++ +++.+...+.++|+++ ...++.+|++|+|.|+|++|++++|+|+++|+.+|++++++++|.+++
T Consensus 147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~ 217 (375)
T cd08282 147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA 217 (375)
T ss_pred CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 9998 5677787899999986 788899999999998899999999999999986788898888877653
No 50
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.97 E-value=4.3e-29 Score=221.78 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=176.8
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.+++. +++++.+.|+| .++||+|+++++++|+.|..++.|.++...+|.++|||++|+|+++|+++.++++|
T Consensus 1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G 79 (345)
T cd08286 1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG 79 (345)
T ss_pred CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence 68999998887 99999999986 79999999999999999999998876555568899999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~ 173 (243)
|+|++.+..+|+.|.+|..+..+.|...... .|...+ |+|++|+.++.. .++++|++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp~~ 138 (345)
T cd08286 80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLPEG 138 (345)
T ss_pred CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECCCC
Confidence 9999998889999999999988888654321 121122 499999999987 89999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++..+++.+.+.+.++|.++....++.+|++|+|.|+|.+|.+++|+|+.+|+.+|++++++++|.++
T Consensus 139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~ 206 (345)
T cd08286 139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEV 206 (345)
T ss_pred CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH
Confidence 99999999998999999877777889999999999889999999999999994489998888777654
No 51
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=7.4e-30 Score=212.07 Aligned_cols=181 Identities=28% Similarity=0.319 Sum_probs=166.1
Q ss_pred CCceeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCC
Q 026140 13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 13 ~~~~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
.|+..|.+++++.|.. +++++.|.|+|+++|++||-.|+|+|..|..+++|.+.+...|+++|.|.+|+|+++|++++
T Consensus 5 ~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt 84 (336)
T KOG1197|consen 5 SPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT 84 (336)
T ss_pred CCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCCcc
Confidence 4677889999998875 77889999999999999999999999999999999987778999999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
++++||||+... .. |.|+|+..+|...++++
T Consensus 85 drkvGDrVayl~------------------------------~~-------------------g~yaee~~vP~~kv~~v 115 (336)
T KOG1197|consen 85 DRKVGDRVAYLN------------------------------PF-------------------GAYAEEVTVPSVKVFKV 115 (336)
T ss_pred ccccccEEEEec------------------------------cc-------------------hhhheeccccceeeccC
Confidence 999999996321 11 49999999999999999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcCC
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGE 243 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~~ 243 (243)
|+.+++++||++.+...|||..+.+..++++|++|||+.| |++|++++|++++.|+ .+|++.+.++|.+.+|
T Consensus 116 pe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~ak 188 (336)
T KOG1197|consen 116 PEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAK 188 (336)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHH
Confidence 9999999999999999999998889999999999999976 9999999999999999 8999999999988764
No 52
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.97 E-value=4.4e-29 Score=221.28 Aligned_cols=204 Identities=27% Similarity=0.429 Sum_probs=173.4
Q ss_pred eeeEEeccCCCCeEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.+++. +++++++.|.|. ++||+||+.++++|+.|..++.+.++ ..+|.++|+|++|+|+++|++++++++|
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (344)
T cd08284 1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG 78 (344)
T ss_pred CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence 68999988765 999999999984 99999999999999999988877654 3457889999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~ 173 (243)
|+|++.+..+|+.|.+|..+.+++|+.....++.+.. ...|+|++|++++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g~~~~~~~v~~~~~~~~~~p~~ 140 (344)
T cd08284 79 DRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSP------------------NLDGAQAEYVRVPFADGTLLKLPDG 140 (344)
T ss_pred CEEEEcccCCCCCChHHhCcCcccCCCCccccccccC------------------CCCCceeEEEEcccccCceEECCCC
Confidence 9999988899999999999999999764321000100 012499999999865 99999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+++.+.|||+++. ..+..+|++|+|+|+|.+|++++++|+.+|+.++++++++++|.++
T Consensus 141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~ 207 (344)
T cd08284 141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLER 207 (344)
T ss_pred CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHH
Confidence 999999999999999999764 5788999999999889999999999999997578888877777654
No 53
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.97 E-value=6.4e-29 Score=222.67 Aligned_cols=203 Identities=31% Similarity=0.464 Sum_probs=168.7
Q ss_pred CceeeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCC
Q 026140 14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 14 ~~~~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
..+++++++..+.. +++++.+.|.|.++||+||++++++|++|..++.+... ....|.++|||++|+|+++|++++
T Consensus 15 ~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~ 93 (364)
T PLN02702 15 EEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVK 93 (364)
T ss_pred ccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCC
Confidence 34566666666665 88889988889999999999999999999998876321 123577899999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 169 (243)
+|++||+|++.+..+|++|..|+.+.+++|++..+ .+.. .+ |+|++|+.++.+.+++
T Consensus 94 ~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~-------------------g~~~~y~~v~~~~~~~ 151 (364)
T PLN02702 94 HLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH-------------------GSLANQVVHPADLCFK 151 (364)
T ss_pred CCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC-------------------CcccceEEcchHHeEE
Confidence 99999999999999999999999999999987432 2211 12 3999999999999999
Q ss_pred cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+|++++++++++.. .+.++|.++ ...++.+|++|+|+|+|++|++++++|+.+|+..+++++++++|.++
T Consensus 152 ~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 221 (364)
T PLN02702 152 LPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSV 221 (364)
T ss_pred CCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 99999999887532 455577765 67888999999999889999999999999999668888888777654
No 54
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.97 E-value=5.9e-29 Score=219.20 Aligned_cols=202 Identities=29% Similarity=0.451 Sum_probs=178.4
Q ss_pred eeeEEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCcc
Q 026140 17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV 92 (243)
Q Consensus 17 ~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~ 92 (243)
|||+++.+++. ++++++.+.|.+.++||+||+.++++|++|...+.|..+....|.++|||++|+|+++|+++.+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (329)
T cd08298 1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF 80 (329)
T ss_pred CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence 68999998883 48888888888999999999999999999999988866545568899999999999999999999
Q ss_pred CCCCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 93 VEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 93 ~~Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
++||+|++.+ ..+|+.|.+|..+.+++|+...+ .|...+| +|++|++++...++++|
T Consensus 81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp 138 (329)
T cd08298 81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP 138 (329)
T ss_pred cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence 9999997643 46899999999999999987764 3433333 89999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++.+++.+.+.+.++|+++ ..++++++++++|+|+|++|++++++++..|+ +|+++++++++.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~ 207 (329)
T cd08298 139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELA 207 (329)
T ss_pred CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHH
Confidence 9999999999999999999986 88999999999999989999999999999999 899999888776653
No 55
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.97 E-value=4.5e-29 Score=226.51 Aligned_cols=207 Identities=23% Similarity=0.203 Sum_probs=174.1
Q ss_pred CCceeeeEEecc--CCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC----------CCCCC-eeeec
Q 026140 13 KPIQCRAAIATA--PGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILGH 76 (243)
Q Consensus 13 ~~~~~ka~~~~~--~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~vlG~ 76 (243)
.|.+||||++.. ++++ +++++++.|.|.++||+||++++++|+.|.+...+.+. ....| .++||
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~ 83 (398)
T TIGR01751 4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS 83 (398)
T ss_pred cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence 457799999965 5543 88899999999999999999999999999876654321 11223 37999
Q ss_pred ceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccce
Q 026140 77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSS 155 (243)
Q Consensus 77 e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~ 155 (243)
|++|+|+++|+++++|++||+|++.....|++|.+|+.+++++|..... .|.. .+ |+
T Consensus 84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~-------------------g~ 141 (398)
T TIGR01751 84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYETNF-------------------GS 141 (398)
T ss_pred ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccCCC-------------------cc
Confidence 9999999999999999999999999999999999999999999965432 2211 12 49
Q ss_pred eeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHH--hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232 (243)
Q Consensus 156 ~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~ 232 (243)
|++|++++...++++|+++++++++.+.+...++|+++.. ..++.+|++|+|+|+ |++|++++++++++|+ +++++
T Consensus 142 ~ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~ 220 (398)
T TIGR01751 142 FAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAV 220 (398)
T ss_pred ceEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEE
Confidence 9999999999999999999999999999999999998654 467899999999998 9999999999999999 78888
Q ss_pred cCCchhhhcC
Q 026140 233 DVISEKFEIG 242 (243)
Q Consensus 233 ~~~~~~~~~~ 242 (243)
++++++.+.+
T Consensus 221 ~~~~~~~~~~ 230 (398)
T TIGR01751 221 VSSPEKAEYC 230 (398)
T ss_pred cCCHHHHHHH
Confidence 8887776543
No 56
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.96 E-value=1.1e-28 Score=216.85 Aligned_cols=194 Identities=25% Similarity=0.422 Sum_probs=167.8
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.++++ +++++.+.|+|.++||+||+.++++|+.|..++.+.++ .|.++|+|++|+|+++|++ +++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~ 73 (319)
T cd08242 1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK 73 (319)
T ss_pred CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence 68999998764 99999999999999999999999999999998887643 5778999999999999988 67999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCC-CCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
+|...+..+|+.|.+|..+..++|...+. .+. ..+ |+|++|++++.+.++++|++++
T Consensus 74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~ 131 (319)
T cd08242 74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRD-------------------GAFAEYLTLPLENLHVVPDLVP 131 (319)
T ss_pred eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCC-------------------CceEEEEEechHHeEECcCCCC
Confidence 99999999999999999999988877553 222 123 3999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++.+ ....++|. +....++++|++|+|+|+|.+|++++|+|+.+|+ +|+++++++++.+.+
T Consensus 132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~ 195 (319)
T cd08242 132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALA 195 (319)
T ss_pred HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 9888764 35556665 4577889999999999889999999999999999 799999888887654
No 57
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.96 E-value=1.4e-28 Score=220.74 Aligned_cols=223 Identities=32% Similarity=0.494 Sum_probs=180.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc---cC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~---~~ 93 (243)
||||++.+++.++.+++.+.|.+.++||+||+.++++|+.|..++.+.++. .+|.++|||++|+|+.+|+++.+ |+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~ 79 (367)
T cd08263 1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS 79 (367)
T ss_pred CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence 689999998777899999999999999999999999999999988876643 67889999999999999999988 99
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g-~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
+||+|++.+..+|+.|.+|..+.+++|+...+-..++ ...+|..++....+...+ ....|+|++|+.++.+.++++|+
T Consensus 80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~P~ 158 (367)
T cd08263 80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVY-MYSMGGLAEYAVVPATALAPLPE 158 (367)
T ss_pred CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccc-cccCCcceeEEEechhhEEECCC
Confidence 9999999888899999999999999998754110011 111111110000000000 01136999999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+++.+.+.+.|||.++.+...+.++++|+|+|+|++|++++++|+.+|+..++++++++++.+.
T Consensus 159 ~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~ 227 (367)
T cd08263 159 SLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAK 227 (367)
T ss_pred CCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH
Confidence 999999999999999999988777778899999999889999999999999999548888888777654
No 58
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.96 E-value=1.5e-28 Score=216.32 Aligned_cols=193 Identities=28% Similarity=0.375 Sum_probs=168.1
Q ss_pred eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
||++++..++ +.+++.+.+.|+++++||+||+.++++|++|...+.+. ....+|.++|||++|+|+.+|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (325)
T cd08264 1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG 79 (325)
T ss_pred CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence 6899998776 34888888888899999999999999999999887642 222357789999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|++.+...|+.|.+|..+.+++|+...+ .+.... |+|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~~~ 137 (325)
T cd08264 80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSN-------------------GGYAEYIVVPEKNLFKIPDSIS 137 (325)
T ss_pred CEEEECCCcCCCCChhhcCCCccccCccce---eeccCC-------------------CceeeEEEcCHHHceeCCCCCC
Confidence 999999989999999999999999986542 333223 3999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
+++++.+.+.+.++|+++. ..++++|++|+|+|+ |++|++++++|+++|+ +|+++++
T Consensus 138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~ 195 (325)
T cd08264 138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR 195 (325)
T ss_pred HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH
Confidence 9999999999999999764 588999999999998 9999999999999999 7888764
No 59
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.96 E-value=1.4e-28 Score=217.78 Aligned_cols=198 Identities=35% Similarity=0.574 Sum_probs=172.5
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++++++. +++.+++.|.+.++||+|+|.++++|+.|..++.+..+...+|.++|+|++|+|+.+|+++++|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd 79 (337)
T cd08261 1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD 79 (337)
T ss_pred CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence 68999998875 89999999999999999999999999999998887665555678999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|+..+..+|+.|..|+.+..++|++.+. .+.... |+|++|+.++.+ ++++|+++++
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~~~ 136 (337)
T cd08261 80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGLSL 136 (337)
T ss_pred EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCCCH
Confidence 99998888999999999999999964432 111112 499999999999 9999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+ ..+.+++.++ +..++.+|++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.++
T Consensus 137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~ 198 (337)
T cd08261 137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEF 198 (337)
T ss_pred HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHH
Confidence 998877 4778888865 77889999999999889999999999999999 89999888777654
No 60
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.96 E-value=2.7e-28 Score=214.32 Aligned_cols=202 Identities=25% Similarity=0.363 Sum_probs=175.3
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++...+.+ +++.+.+.|.+.+++|+|+++++++|++|..++.|.+.. ..+|.++|||++|+|+.+|+++..|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (342)
T cd08266 1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK 80 (342)
T ss_pred CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence 689998844332 777788888889999999999999999999988876532 35678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|++.+..+|+.|.+|..+.+++|+.... .|.... |+|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~-------------------g~~~~~~~~~~~~~~~~p~~ 138 (342)
T cd08266 81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVD-------------------GGYAEYVAVPARNLLPIPDN 138 (342)
T ss_pred CCCEEEEccccccccchhhccccccccccccc---cccccC-------------------cceeEEEEechHHceeCCCC
Confidence 99999999999999999999999999986432 333333 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+++.+.++|.++.+..++.++++++|+|+ +.+|++++++++.+|+ +++.+++++++.+.
T Consensus 139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~ 206 (342)
T cd08266 139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLER 206 (342)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 9999999999899999998777888999999999998 7999999999999999 89999888777654
No 61
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.96 E-value=3.1e-28 Score=215.80 Aligned_cols=200 Identities=31% Similarity=0.453 Sum_probs=173.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++++++. +++++.+.|.+.+++|+|+++++++|+.|..++.+.+.....|.++|+|++|+|+++|++++.|++||
T Consensus 1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd 79 (343)
T cd08235 1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD 79 (343)
T ss_pred CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence 58999998875 99999999999999999999999999999998877653334577899999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCc-----EEEcC
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD 171 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~-----~~~ip 171 (243)
+|++.++.+|+.|..|..++.++|+.... .|...+ |+|++|++++.+. ++++|
T Consensus 80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~lP 137 (343)
T cd08235 80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLKLP 137 (343)
T ss_pred EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEECC
Confidence 99999999999999999999999977543 232223 3999999999998 99999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++.+++.+ +.+.++|+++ ...++.+|++|+|+|+|.+|++++++|+.+|++.++++.+++++.+.
T Consensus 138 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~ 205 (343)
T cd08235 138 DNVSFEEAALV-EPLACCINAQ-RKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEF 205 (343)
T ss_pred CCCCHHHHHhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 99999998876 6889999976 45589999999999889999999999999999438888888777654
No 62
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.96 E-value=1.8e-28 Score=217.51 Aligned_cols=200 Identities=28% Similarity=0.437 Sum_probs=168.3
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
||++++.++++.+++.+.|.|.|.++||+||++++++|++|..++.+.. ....+|.++|||++|+|+++|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~ 80 (341)
T PRK05396 1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK 80 (341)
T ss_pred CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence 6899999998779999999999999999999999999999998776532 1224677899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+..+..+|+.|.+|..+.++||+.... .+...+ |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~iP~~ 138 (341)
T PRK05396 81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRP-------------------GAFAEYLVIPAFNVWKIPDD 138 (341)
T ss_pred CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCC-------------------CcceeeEEechHHeEECcCC
Confidence 99999999999999999999999999976432 222223 39999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+ ..+.+++.++.. ...+|++|+|.|+|++|++++++|+.+|+..|+++++++++.++
T Consensus 139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~ 203 (341)
T PRK05396 139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLEL 203 (341)
T ss_pred CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 999888754 466666665432 34689999999889999999999999999668888877777654
No 63
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.96 E-value=2.9e-28 Score=214.84 Aligned_cols=202 Identities=34% Similarity=0.495 Sum_probs=178.6
Q ss_pred eeeEEeccCCCC-eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 17 ~ka~~~~~~~~~-~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
||++++..++++ +.+++.+.|.+.+++|+|++.++++|+.|...+.+.++ ...+|.++|+|++|+|+.+|+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~ 80 (338)
T cd08254 1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV 80 (338)
T ss_pred CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence 689999999987 57778888888999999999999999999998887654 3456789999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|+..+..+|+.|.+|..+..++|..... .|.... |+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~ 138 (338)
T cd08254 81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGID-------------------GGFAEYIVVPARALVPVPDGV 138 (338)
T ss_pred CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccC-------------------CcceeeEEechHHeEECCCCC
Confidence 9999999999999999999999999955443 232223 399999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++.+++.+...+.+||.++....++.++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.
T Consensus 139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~ 204 (338)
T cd08254 139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLEL 204 (338)
T ss_pred CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 9999999999999999988777889999999998889999999999999999 79999988877654
No 64
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.96 E-value=3e-28 Score=214.79 Aligned_cols=200 Identities=30% Similarity=0.435 Sum_probs=175.5
Q ss_pred eeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (243)
Q Consensus 18 ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~ 97 (243)
||+++.+++..+++++.+.|.+.+++|+|++.++++|+.|...+.+......+|.++|+|++|+|+.+|+++++|++||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~ 80 (330)
T cd08245 1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR 80 (330)
T ss_pred CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence 68899999656999999999999999999999999999999998876544456889999999999999999999999999
Q ss_pred EEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 98 Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
|++.+. .+|++|.+|..+..++|+...+ .+.... |+|++|+.++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~~~~ 138 (330)
T cd08245 81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQ-------------------GGYAEYMVADAEYTVLLPDGLPL 138 (330)
T ss_pred EEEccccCCCCCChhhhCcCcccCcCccc---cCcccC-------------------CccccEEEEcHHHeEECCCCCCH
Confidence 987554 6799999999999999988653 232222 38999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.+++.+.+...++|.++. ...+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.
T Consensus 139 ~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~ 201 (330)
T cd08245 139 AQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKREL 201 (330)
T ss_pred HHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 999998889999999764 4789999999999888899999999999999 89999988877654
No 65
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=5.2e-28 Score=214.67 Aligned_cols=200 Identities=32% Similarity=0.425 Sum_probs=168.2
Q ss_pred eeeEEeccCCCCeEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++.+++. +++++.+.|.| +++||+||+.++++|++|...+.|.++. ..|.++|||++|+|+++|+++.++++|
T Consensus 1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G 78 (345)
T cd08287 1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG 78 (345)
T ss_pred CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence 68999998876 99999999996 8999999999999999999888776543 457899999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC--cEEEcCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT 173 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~--~~~~ip~~ 173 (243)
|+|++....+|+.|..|..+..++|....+ .+...+| +|++|++++.+ .++++|++
T Consensus 79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~ 136 (345)
T cd08287 79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS 136 (345)
T ss_pred CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence 999886677899999999999999986543 3333334 99999999875 99999999
Q ss_pred CChhhhc-----ccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++..+. .+...+.++|+++ ...+.++|++|+|.|+|++|++++++|+++|+..++++++++++.++
T Consensus 137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~ 208 (345)
T cd08287 137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQAL 208 (345)
T ss_pred CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 9872221 2225688898875 57789999999999889999999999999999668888888766654
No 66
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.96 E-value=9e-28 Score=211.93 Aligned_cols=199 Identities=31% Similarity=0.504 Sum_probs=174.3
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++.+++. +++.+.+.|.+.++||+||++++++|+.|...+.|.++. .+|.++|+|++|+|+.+|+++++|++||
T Consensus 1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd 78 (334)
T cd08234 1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD 78 (334)
T ss_pred CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence 68999998885 999999999999999999999999999999988887543 3778999999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|++.+...|+.|.+|..+++++|+.... .|...+ |+|++|++++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~~ 136 (334)
T cd08234 79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRN-------------------GGFAEYVVVPAKQVYKIPDNLSF 136 (334)
T ss_pred EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCC-------------------CcceeEEEecHHHcEECcCCCCH
Confidence 99999999999999999999988876531 222223 39999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.+++.+ +.+.+++.++ +..++.+|++|+|+|+|.+|.+++++|+++|++.|+++++++++.+.
T Consensus 137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~ 199 (334)
T cd08234 137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLEL 199 (334)
T ss_pred HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 998766 6788888876 78889999999999889999999999999999448888888877654
No 67
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.96 E-value=8.4e-28 Score=217.22 Aligned_cols=200 Identities=26% Similarity=0.442 Sum_probs=166.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC------C-CCCCCeeeecceeEEEEEeCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGENV 89 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~vlG~e~~G~Vv~vG~~v 89 (243)
+.+.++..+ .+++++++.|.++++||+||++++++|++|+.++.+.. + ...+|.++|||++|+|+++|+++
T Consensus 29 ~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v 106 (384)
T cd08265 29 LGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNV 106 (384)
T ss_pred ceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCC
Confidence 444444433 39999999999999999999999999999998876321 1 13467899999999999999999
Q ss_pred CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (243)
Q Consensus 90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 169 (243)
+.|++||+|++.+..+|+.|..|..++.++|+.+.. .|...+ |+|++|+.++.+.+++
T Consensus 107 ~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~-------------------g~~~~~v~v~~~~~~~ 164 (384)
T cd08265 107 KNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSAD-------------------GAFAEYIAVNARYAWE 164 (384)
T ss_pred CCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCC-------------------CcceeeEEechHHeEE
Confidence 999999999999999999999999999999986553 333223 3999999999999999
Q ss_pred cCCC-------CChhhhcccchhhHhHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 170 VDPT-------VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 170 ip~~-------~~~~~aa~~~~~~~ta~~~l~~~-~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+|++ +++. ++.+...+.++|+++... .++++|++|+|+|+|++|++++++|+.+|+.+|++++++++|.++
T Consensus 165 lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~ 243 (384)
T cd08265 165 INELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNL 243 (384)
T ss_pred CCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 9986 3445 455556889999987655 689999999999889999999999999999779999988877654
No 68
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=99.96 E-value=3.5e-28 Score=205.21 Aligned_cols=185 Identities=24% Similarity=0.338 Sum_probs=165.5
Q ss_pred CCCCCCCceeeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEE
Q 026140 8 NKTAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVE 83 (243)
Q Consensus 8 ~~~~~~~~~~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv 83 (243)
+.+..++...|++++.+.++| +.+++++.|....++|+||.+|+.|||+|+..++|.++. ..+|.|-|.|++|+|+
T Consensus 11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv 90 (354)
T KOG0025|consen 11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV 90 (354)
T ss_pred ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence 445566788999999999998 667888888887888999999999999999999999866 4689999999999999
Q ss_pred EeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEec
Q 026140 84 SVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163 (243)
Q Consensus 84 ~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~ 163 (243)
++|+++.+|++||.|+..... .|+|++|.+.+
T Consensus 91 ~vGs~vkgfk~Gd~VIp~~a~------------------------------------------------lGtW~t~~v~~ 122 (354)
T KOG0025|consen 91 AVGSNVKGFKPGDWVIPLSAN------------------------------------------------LGTWRTEAVFS 122 (354)
T ss_pred EecCCcCccCCCCeEeecCCC------------------------------------------------CccceeeEeec
Confidence 999999999999999865431 25999999999
Q ss_pred cCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 164 IAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 164 ~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.+.+++++++++.++||.+..+.+|||+.+.+..++.+|++|+-.|+ +.+|.+++|+|+++|+ +.|-+.|+....+.
T Consensus 123 e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gi-ktinvVRdR~~iee 200 (354)
T KOG0025|consen 123 ESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGI-KTINVVRDRPNIEE 200 (354)
T ss_pred ccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCc-ceEEEeecCccHHH
Confidence 99999999999999999999999999999989999999999999999 9999999999999999 78888877655544
No 69
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.96 E-value=1.6e-27 Score=211.73 Aligned_cols=199 Identities=33% Similarity=0.510 Sum_probs=167.8
Q ss_pred eEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCC-CC--CCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DF--PAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 19 a~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|++|+++.. +.+++.+.|.|.++||+|||.++++|+.|...+.+. .. ...+|.++|+|++|+|+++|+++.+|++|
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G 79 (343)
T cd05285 1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG 79 (343)
T ss_pred CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence 467788865 999999999999999999999999999998876422 11 12357789999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|++.+..+|++|.+|+.+.+++|+...+. ...... |+|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~ 138 (343)
T cd05285 80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS 138 (343)
T ss_pred CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence 9999999999999999999999999765321 111112 4999999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++.+ ..+.++++++ ...++++|++|+|.|+|.+|++++++|+.+|+..|+++.+++++.++
T Consensus 139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~ 202 (343)
T cd05285 139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEF 202 (343)
T ss_pred HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 9998876 4788898875 78899999999999889999999999999999448888888777654
No 70
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.96 E-value=1.8e-27 Score=210.89 Aligned_cols=189 Identities=25% Similarity=0.365 Sum_probs=160.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-----------CCCCCeeeecceeEEEEEe
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV 85 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~vlG~e~~G~Vv~v 85 (243)
|||+++..+ .+.+++++.|.|.++||+|++.++++|+.|..++.+... ...+|.++|+|++|+|+++
T Consensus 1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v 78 (341)
T cd08262 1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY 78 (341)
T ss_pred CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence 689999876 599999999999999999999999999999998877211 2235788999999999999
Q ss_pred CCCCCc-cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc
Q 026140 86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI 164 (243)
Q Consensus 86 G~~v~~-~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~ 164 (243)
|+++++ |++||+|+..+...|+.|.+|..+.. + ..+ |+|++|++++.
T Consensus 79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~------------~-~~~-------------------g~~~~~~~v~~ 126 (341)
T cd08262 79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS------------P-EAP-------------------GGYAEYMLLSE 126 (341)
T ss_pred CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC------------c-CCC-------------------CceeeeEEech
Confidence 999987 99999999999999999999932210 0 012 49999999999
Q ss_pred CcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+.++++|+++++++++ +.+.++++|++ ....++++|++|||+|+|++|.+++|+|+.+|+..++++++++++.++
T Consensus 127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~ 201 (341)
T cd08262 127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRAL 201 (341)
T ss_pred HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 9999999999998887 55688899987 578889999999999889999999999999999667888877777654
No 71
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.96 E-value=1.8e-27 Score=211.03 Aligned_cols=199 Identities=31% Similarity=0.534 Sum_probs=172.7
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd 96 (243)
|||+++++.+. +.+++.+.|++.++||+||+.++++|+.|...+.+.+. ...|.++|+|++|+|+++|+++..|++||
T Consensus 1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd 78 (343)
T cd08236 1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD 78 (343)
T ss_pred CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence 68999999876 88999999999999999999999999999988877652 24578899999999999999999999999
Q ss_pred EEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 97 ~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
+|+..+...|+.|.+|..+++..|+.... +|.... |+|++|++++.+.++++|+++++
T Consensus 79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lP~~~~~ 136 (343)
T cd08236 79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRD-------------------GAFAEYVSVPARNLIKIPDHVDY 136 (343)
T ss_pred EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccC-------------------CcccceEEechHHeEECcCCCCH
Confidence 99999888999999999999988876432 332223 39999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+ ....++|.++ ......++++|+|+|+|.+|++++++|+++|+..++++++++++.++
T Consensus 137 ~~aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~ 199 (343)
T cd08236 137 EEAAMI-EPAAVALHAV-RLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAV 199 (343)
T ss_pred HHHHhc-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 998887 5788999976 47788999999999889999999999999999449999888776554
No 72
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.95 E-value=5.5e-27 Score=207.79 Aligned_cols=201 Identities=31% Similarity=0.445 Sum_probs=174.8
Q ss_pred eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
|||+++.+++ ..+++++++.|.|.++||+||+.++++|+.|..++.+..+. ...|.++|+|++|+|+++|+++++|++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~ 80 (341)
T cd08297 1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV 80 (341)
T ss_pred CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence 6899998877 33899999999999999999999999999999888776532 345668999999999999999999999
Q ss_pred CCEEEeec-cCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 95 Gd~Vv~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
||+|+..+ ..+|+.|.+|..+++++|..... .|.... |+|++|+.++.+.++++|++
T Consensus 81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~s~~~~~~~~~~~lp~~ 138 (341)
T cd08297 81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVD-------------------GTFAEYAIADARYVTPIPDG 138 (341)
T ss_pred CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccC-------------------CcceeEEEeccccEEECCCC
Confidence 99998765 57899999999999999987654 233223 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.....|||.++.. .+++++++|||+|+ +.+|++++++|+++|+ +|+++.+++++.+.
T Consensus 139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~ 205 (341)
T cd08297 139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLEL 205 (341)
T ss_pred CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 9999999989899999997644 58999999999998 6799999999999999 89999998877654
No 73
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.95 E-value=3.5e-27 Score=208.89 Aligned_cols=200 Identities=31% Similarity=0.484 Sum_probs=164.6
Q ss_pred EeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhh-CCCC--CCCCCeeeecceeEEEEEeCCCCCccCCCCE
Q 026140 21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDGVVEGDV 97 (243)
Q Consensus 21 ~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~ 97 (243)
++++.+. +++++.+.|.+.++||+||+.++++|+.|...+. +... ...+|.++|+|++|+|+++|+++++|++||+
T Consensus 2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~ 80 (339)
T cd08232 2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR 80 (339)
T ss_pred eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence 4666766 9999999999999999999999999999988764 3221 1245778999999999999999999999999
Q ss_pred EEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCCh
Q 026140 98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176 (243)
Q Consensus 98 Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~ 176 (243)
|++.+..+|++|.+|..+..++|....+ .+.. .+ ....|+|++|++++.+.++++|+++++
T Consensus 81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~---------------~~~~g~~~~~v~v~~~~~~~iP~~~~~ 142 (339)
T cd08232 81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF---------------PHVQGGFREYLVVDASQCVPLPDGLSL 142 (339)
T ss_pred EEEccCCcCCCChHHhCcCcccCccccc---eeecccc---------------CCCCCceeeEEEechHHeEECcCCCCH
Confidence 9999999999999999999999987542 1110 00 001249999999999999999999999
Q ss_pred hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++|+. ...+.++|.++...... ++++|||.|+|.+|++++++|+.+|+.+++++++++++.++
T Consensus 143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~ 205 (339)
T cd08232 143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV 205 (339)
T ss_pred HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 99876 46888999876554445 89999998889999999999999999678898887776554
No 74
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.95 E-value=3.9e-27 Score=209.16 Aligned_cols=200 Identities=30% Similarity=0.450 Sum_probs=167.4
Q ss_pred eeeEEeccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++.+++..+.+.+.+.|.|.++|++||++++++|+.|..++.+.. .....|.++|+|++|+|+.+|++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~ 80 (341)
T cd05281 1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK 80 (341)
T ss_pred CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence 6899999888669999999999999999999999999999988765421 1223567899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+..+..+|+.|.+|..+++++|+... +.|.... |+|++|++++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~ 138 (341)
T cd05281 81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVDTD-------------------GCFAEYVVVPEENLWKNDKD 138 (341)
T ss_pred CCCEEEECCccCCCCChHHHCcCcccCcccc---eEeccCC-------------------CcceEEEEechHHcEECcCC
Confidence 9999999888999999999999999997543 2343223 49999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++.+.+ ++...+.++++++. ....+|++|+|.|+|.+|++++++++++|+.+|++++++++|.++
T Consensus 139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~ 203 (341)
T cd05281 139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLEL 203 (341)
T ss_pred CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 998555 45557788887654 455789999999889999999999999998668888777777654
No 75
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.95 E-value=3.2e-27 Score=208.28 Aligned_cols=175 Identities=21% Similarity=0.251 Sum_probs=148.2
Q ss_pred eeeEEeccCCCC-----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC
Q 026140 17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 17 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
|||+++++++.+ +++++++.|.|+++||+||+.++++|++|+.++.|.++. ..+|.++|||++|+|+++|++++
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~ 80 (324)
T cd08291 1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL 80 (324)
T ss_pred CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence 689999988853 777888999999999999999999999999998886532 35688999999999999999999
Q ss_pred c-cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEE
Q 026140 91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK 169 (243)
Q Consensus 91 ~-~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ 169 (243)
+ |++||+|+..+. .+ |+|++|++++.+.+++
T Consensus 81 ~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~~ 112 (324)
T cd08291 81 AQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCLP 112 (324)
T ss_pred ccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeEE
Confidence 6 999999975321 01 3899999999999999
Q ss_pred cCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEE-C-CCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 170 ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~-G-aG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+|+++++++++.+++...|+|. +.+.... ++++++|+ | +|++|++++|+|+++|+ +|++++++++|++++
T Consensus 113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~ 184 (324)
T cd08291 113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLL 184 (324)
T ss_pred CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 9999999999988888889975 4555554 56667665 5 49999999999999999 899999888887654
No 76
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.95 E-value=1.3e-26 Score=203.26 Aligned_cols=194 Identities=30% Similarity=0.477 Sum_probs=165.7
Q ss_pred eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
||||++.+.+ ..+.+++++.|.+.++||+|++.++++|+.|...+.+.+.....|.++|+|++|+|+.+|++++.|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G 80 (306)
T cd08258 1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG 80 (306)
T ss_pred CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence 5788988755 248999999999999999999999999999998887765333457899999999999999999999999
Q ss_pred CEEEeecc-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 96 d~Vv~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
|+|+..+. .+|+.|.+|..+....|..-+. .|.... |+|++|++++.+.++++|+++
T Consensus 81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~~ 138 (306)
T cd08258 81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQAD-------------------GGFAEYVLVPEESLHELPENL 138 (306)
T ss_pred CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCC-------------------CceEEEEEcchHHeEECcCCC
Confidence 99988774 7899999999999888876321 222222 499999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
++++++ +.....++|+++.....++++++|+|.|+|.+|++++++|+++|+ +|+++.+
T Consensus 139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~ 196 (306)
T cd08258 139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGT 196 (306)
T ss_pred CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECC
Confidence 999887 566888999988888889999999998879999999999999999 7877743
No 77
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.95 E-value=1.2e-26 Score=205.96 Aligned_cols=192 Identities=28% Similarity=0.340 Sum_probs=157.3
Q ss_pred eeeEEeccCCCC--eEEEE-EecCCCCCCeEEEEEeeeecChhhhhhhhCCCC--------------------CCCCCee
Q 026140 17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI 73 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~v 73 (243)
|||+++.+++.+ +.+.+ .+.|.|.+++|+|||.++++|++|+.++.|.++ ...+|.+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 80 (350)
T cd08274 1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI 80 (350)
T ss_pred CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence 688888877653 44544 467778999999999999999999998876532 2346889
Q ss_pred eecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeeccccc
Q 026140 74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV 153 (243)
Q Consensus 74 lG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~ 153 (243)
+|||++|+|+++|+++++|++||+|++.+..+|+.|..|.. | .. .|...+
T Consensus 81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~---~~---~~~~~~------------------- 130 (350)
T cd08274 81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----I---DY---IGSERD------------------- 130 (350)
T ss_pred cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----c---cc---cCCCCC-------------------
Confidence 99999999999999999999999999988888877665421 1 10 111112
Q ss_pred ceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140 154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232 (243)
Q Consensus 154 g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~ 232 (243)
|+|++|++++...++++|+++++.+++.+.+.+.|+|.++ ...++.+|++|+|+|+ |++|++++++|+++|+ +++++
T Consensus 131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~ 208 (350)
T cd08274 131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV 208 (350)
T ss_pred ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence 3999999999999999999999999999999999999975 7788999999999998 9999999999999999 78888
Q ss_pred cCCchhhhc
Q 026140 233 DVISEKFEI 241 (243)
Q Consensus 233 ~~~~~~~~~ 241 (243)
++++ +.+.
T Consensus 209 ~~~~-~~~~ 216 (350)
T cd08274 209 AGAA-KEEA 216 (350)
T ss_pred eCch-hhHH
Confidence 7655 5443
No 78
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.95 E-value=7.6e-27 Score=206.17 Aligned_cols=177 Identities=24% Similarity=0.239 Sum_probs=152.8
Q ss_pred eeEEeccC---CCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCcc
Q 026140 18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV 92 (243)
Q Consensus 18 ka~~~~~~---~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~ 92 (243)
||+++.++ +.+ ++.+++|.|.|+++||+|||+++++|+.|..++.+..+...+|.++|+|++|+|+++|+++++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (336)
T TIGR02817 1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF 80 (336)
T ss_pred CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 57888886 433 7778889999999999999999999999999887765544568899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
++||+|+.... .... |+|++|++++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip~ 114 (336)
T TIGR02817 81 KPGDEVWYAGD---------------------------IDRP-------------------GSNAEFHLVDERIVGHKPK 114 (336)
T ss_pred CCCCEEEEcCC---------------------------CCCC-------------------CcccceEEEcHHHcccCCC
Confidence 99999975310 0011 4899999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchhhhc
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEI 241 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~~~~ 241 (243)
++++++++.+++...|||.++....++.+ |++|||+|+ |++|++++|+|+.+ |+ +|+++++++++.+.
T Consensus 115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~ 189 (336)
T TIGR02817 115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEW 189 (336)
T ss_pred CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHH
Confidence 99999999999999999998877788776 999999997 99999999999998 99 89999988877654
No 79
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.95 E-value=1.1e-26 Score=203.87 Aligned_cols=174 Identities=26% Similarity=0.283 Sum_probs=151.7
Q ss_pred eeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCcc
Q 026140 17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV 92 (243)
Q Consensus 17 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~ 92 (243)
|||+++.+++.+ +++++++.|.+.++||+|||.++++|+.|+..+.|.++ ....|.++|||++|+|+++|+++++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~ 80 (324)
T cd08292 1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL 80 (324)
T ss_pred CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence 689999887753 77899999999999999999999999999998877654 23468899999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
++||+|++.+. . |+|++|+.++...++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip~ 111 (324)
T cd08292 81 QVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLPD 111 (324)
T ss_pred CCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECCC
Confidence 99999975421 1 3899999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++++++.+++...++|.++ ...++.+|++|||+|+ |.+|++++++|+++|+ +++++.+++++.+.
T Consensus 112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~ 179 (324)
T cd08292 112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAE 179 (324)
T ss_pred CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHH
Confidence 999999999888889999875 5688999999999987 9999999999999999 78888777765543
No 80
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.95 E-value=4e-27 Score=204.18 Aligned_cols=154 Identities=23% Similarity=0.368 Sum_probs=129.9
Q ss_pred eeecceeEEEEEeCCCCC------ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCce
Q 026140 73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET 146 (243)
Q Consensus 73 vlG~e~~G~Vv~vG~~v~------~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 146 (243)
++|||++|+|+++|++|+ +|++||||++.+..+|++|.+|+.+.+++|+.... .|....+
T Consensus 1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~----------- 66 (280)
T TIGR03366 1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD----------- 66 (280)
T ss_pred CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence 589999999999999999 89999999999999999999999999999987553 2221100
Q ss_pred eecccccceeeeeEEeccC-cEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC
Q 026140 147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG 225 (243)
Q Consensus 147 ~~~~~~~g~~~~~~~v~~~-~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g 225 (243)
..+...|+|+||++++.. .++++|+++++++++.+.+.+.|+|+++ +.....+|++|||+|+|++|++++|+|+++|
T Consensus 67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G 144 (280)
T TIGR03366 67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG 144 (280)
T ss_pred -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence 000011499999999987 7999999999999999999999999975 4556679999999999999999999999999
Q ss_pred CCeEEEEcCCchhhhcC
Q 026140 226 ATRIIGVDVISEKFEIG 242 (243)
Q Consensus 226 ~~~vi~~~~~~~~~~~~ 242 (243)
+.+|++++++++|++++
T Consensus 145 ~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 145 AARVVAADPSPDRRELA 161 (280)
T ss_pred CCEEEEECCCHHHHHHH
Confidence 95599999888888764
No 81
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.94 E-value=5.4e-26 Score=201.75 Aligned_cols=162 Identities=21% Similarity=0.223 Sum_probs=134.2
Q ss_pred eEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhh---CCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccC
Q 026140 29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104 (243)
Q Consensus 29 ~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~ 104 (243)
+++.+.+.|.|. +|||||||.+++||+.|..... +......+|.++|||++|+|+++|+++++|++||+|+...
T Consensus 23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~-- 100 (345)
T cd08293 23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN-- 100 (345)
T ss_pred eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence 888899999874 9999999999999999863322 1111234678999999999999999999999999996420
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhh----hc
Q 026140 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC 180 (243)
Q Consensus 105 ~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~----aa 180 (243)
++|+||++++.+.++++|+++++.+ ++
T Consensus 101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a 131 (345)
T cd08293 101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG 131 (345)
T ss_pred -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence 2799999999999999999864332 44
Q ss_pred ccchhhHhHHHHHHHhcCCCCC--CEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~~~g--~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.+.+++.|||+++.+..++++| ++|||+|+ |++|++++|+|+++|+.+|++++++++|.++
T Consensus 132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~ 195 (345)
T cd08293 132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQL 195 (345)
T ss_pred hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHH
Confidence 5667899999987777778877 99999998 9999999999999998669999988887664
No 82
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.94 E-value=4.7e-26 Score=201.69 Aligned_cols=171 Identities=26% Similarity=0.338 Sum_probs=150.8
Q ss_pred eeeEEeccCCCC---eEEEEEecCCCCC-CeEEEEEeeeecChhhhhhhhCCCCCC-C----CCeeeecceeEEEEEeCC
Q 026140 17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE 87 (243)
Q Consensus 17 ~ka~~~~~~~~~---~~~~e~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~vlG~e~~G~Vv~vG~ 87 (243)
|||+++.+++.+ +.+++.+.|.|.+ +||+||+.++++|+.|...+.+..+.. . .|.++|||++|+|+++|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~ 80 (341)
T cd08290 1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS 80 (341)
T ss_pred CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence 789999999875 7889999998887 999999999999999999887765321 2 577899999999999999
Q ss_pred CCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcE
Q 026140 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV 167 (243)
Q Consensus 88 ~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 167 (243)
+++.|++||+|++... .. |+|++|+.++.+.+
T Consensus 81 ~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~~ 112 (341)
T cd08290 81 GVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADDL 112 (341)
T ss_pred CCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHHe
Confidence 9999999999975421 01 48999999999999
Q ss_pred EEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++|+++++++++.+++.+.|+|+++.+...+.+|++|||+|+ |++|++++++|+++|+ +++++.+++
T Consensus 113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~ 181 (341)
T cd08290 113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDR 181 (341)
T ss_pred EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 9999999999999999999999998777778899999999997 9999999999999999 788877665
No 83
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.94 E-value=1.1e-25 Score=199.85 Aligned_cols=176 Identities=23% Similarity=0.251 Sum_probs=146.2
Q ss_pred CceeeeEEeccCCC-CeEEEEEec----CCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecce--eEEEEEe
Q 026140 14 PIQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESV 85 (243)
Q Consensus 14 ~~~~ka~~~~~~~~-~~~~~e~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~--~G~Vv~v 85 (243)
...+|+|+...+.. .|++++.++ |+|++|||||||++++||+.|...+.|.+.. ...|.++|+++ .|.+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v 84 (338)
T cd08295 5 QVILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVV 84 (338)
T ss_pred EEEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEE
Confidence 34578887655543 388898887 8899999999999999999999988875432 24577888754 4455557
Q ss_pred CCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc-
Q 026140 86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI- 164 (243)
Q Consensus 86 G~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~- 164 (243)
|+.++.|++||+|+.. |+|+||++++.
T Consensus 85 ~~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~ 112 (338)
T cd08295 85 DSGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRG 112 (338)
T ss_pred ecCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecch
Confidence 8888899999999632 28999999999
Q ss_pred CcEEEcC-CCCChh-hhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 165 AHVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 165 ~~~~~ip-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+.++++| +++++. +++.+.+++.|+|+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++
T Consensus 113 ~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~ 191 (338)
T cd08295 113 QDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDL 191 (338)
T ss_pred hceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 7999995 678886 788899999999998777789999999999998 9999999999999999 89999988888765
Q ss_pred C
Q 026140 242 G 242 (243)
Q Consensus 242 ~ 242 (243)
+
T Consensus 192 ~ 192 (338)
T cd08295 192 L 192 (338)
T ss_pred H
Confidence 4
No 84
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.94 E-value=2e-25 Score=198.07 Aligned_cols=194 Identities=28% Similarity=0.478 Sum_probs=162.1
Q ss_pred ccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC---CCCCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140 23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99 (243)
Q Consensus 23 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv 99 (243)
+++++++.+++.+.|.|.++||+||+.++++|+.|..++++.. ....+|.++|+|++|+|+++|+++++|++||+|+
T Consensus 5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 84 (340)
T TIGR00692 5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS 84 (340)
T ss_pred ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence 6678889999999999999999999999999999998765532 1223567899999999999999999999999999
Q ss_pred eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhh
Q 026140 100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 179 (243)
Q Consensus 100 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a 179 (243)
..+...|+.|..|..+...+|...+. .+.... |+|++|++++.+.++++|++++++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~a 142 (340)
T TIGR00692 85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTD-------------------GCFAEYAVVPAQNIWKNPKSIPPEYA 142 (340)
T ss_pred ECCcCCCCCChhhhCcChhhCcCcce---EeecCC-------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence 99999999999999999999987543 222222 49999999999999999999998655
Q ss_pred cccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+ +...+.+++.++ .....+|++|+|.|+|++|++++++|+.+|+..|+++++++++.++
T Consensus 143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~ 201 (340)
T TIGR00692 143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLEL 201 (340)
T ss_pred h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 4 556888888865 3456899999998889999999999999999448888777766553
No 85
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.94 E-value=3.1e-25 Score=195.37 Aligned_cols=177 Identities=21% Similarity=0.194 Sum_probs=155.5
Q ss_pred eeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 16 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
+||++++.+++.+ +++++++.|.|.++||+||+.++++|++|+.+..+.++...+|.++|+|++|+|+.+|++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (327)
T PRK10754 1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK 80 (327)
T ss_pred CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence 4899999988764 88889999999999999999999999999988877665445678899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+.... .. |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp~~ 112 (327)
T PRK10754 81 VGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILPDA 112 (327)
T ss_pred CCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCCCC
Confidence 9999974210 01 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+.+...++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ +++++++++++.+.
T Consensus 113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~ 180 (327)
T PRK10754 113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQR 180 (327)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 9999999888899999998777788999999999986 9999999999999999 89999888877654
No 86
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.93 E-value=6.7e-25 Score=196.05 Aligned_cols=179 Identities=17% Similarity=0.219 Sum_probs=144.3
Q ss_pred CCCCceeeeEEeccCCC------CeEEEEE---ecCC-CCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeec--ce
Q 026140 11 AGKPIQCRAAIATAPGE------PLVIDEV---IVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--EA 78 (243)
Q Consensus 11 ~~~~~~~ka~~~~~~~~------~~~~~e~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~--e~ 78 (243)
...+.++|.|++.+.-+ .|++.+. +.|. +++||||||+.+++||+.|...+.+.......|.++|+ |+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~ 82 (348)
T PLN03154 3 EGQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEG 82 (348)
T ss_pred CCccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEe
Confidence 34456788888854432 2888763 5553 47999999999999999987654432222235788998 88
Q ss_pred eEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeee
Q 026140 79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE 158 (243)
Q Consensus 79 ~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~ 158 (243)
+|+|..+|+++++|++||+|+.. |+|+|
T Consensus 83 ~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~ae 110 (348)
T PLN03154 83 FGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEE 110 (348)
T ss_pred eEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEE
Confidence 99999999999999999999632 27999
Q ss_pred eEEeccCc--EEE--cCCCCChh-hhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140 159 YTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232 (243)
Q Consensus 159 ~~~v~~~~--~~~--ip~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~ 232 (243)
|..++... +++ +|++++++ +++.++++..|||+++.+..++++|++|||+|+ |++|++++|+|+++|+ +|+++
T Consensus 111 y~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~ 189 (348)
T PLN03154 111 YSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGS 189 (348)
T ss_pred EEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence 99998753 544 58999986 688889999999998877788999999999998 9999999999999999 89999
Q ss_pred cCCchhhhcC
Q 026140 233 DVISEKFEIG 242 (243)
Q Consensus 233 ~~~~~~~~~~ 242 (243)
+++++|.+++
T Consensus 190 ~~~~~k~~~~ 199 (348)
T PLN03154 190 AGSSQKVDLL 199 (348)
T ss_pred cCCHHHHHHH
Confidence 9888887653
No 87
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.93 E-value=2.8e-25 Score=189.02 Aligned_cols=172 Identities=35% Similarity=0.511 Sum_probs=150.3
Q ss_pred eEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCC
Q 026140 43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS 121 (243)
Q Consensus 43 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~ 121 (243)
||+|+++++++|+.|...+.+..+ ...+|.++|+|++|+|+++|++++.|++||+|+..+..+|+.|.+|+. +|+
T Consensus 1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~ 76 (271)
T cd05188 1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP 76 (271)
T ss_pred CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence 689999999999999999888654 345678999999999999999999999999999999999999999996 676
Q ss_pred CCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCC
Q 026140 122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 201 (243)
Q Consensus 122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~ 201 (243)
.... .+.... |+|++|+.++.+.++++|+++++++++.+++.+.++|.++.....+.+
T Consensus 77 ~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~ 134 (271)
T cd05188 77 GGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP 134 (271)
T ss_pred CCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence 5553 222223 499999999999999999999999999998999999998766666689
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++|+|+|+|++|++++++++.+|. +|+++++++++.+.
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~ 173 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLEL 173 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHH
Confidence 9999999996699999999999998 89999988777654
No 88
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.93 E-value=1.1e-24 Score=191.59 Aligned_cols=196 Identities=27% Similarity=0.316 Sum_probs=161.7
Q ss_pred eeeEEeccCC--CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||++++..+ +.+++.+.+.|.+.++|++|++.++++|++|..+..+.++. ...|.++|||++|+|+++|+++.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (336)
T cd08276 1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK 80 (336)
T ss_pred CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence 7899999765 23777888888889999999999999999999988776432 24678899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|++.....|+.+.+ .+|.... +.|.... |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~~~~~~~------~~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~ 132 (336)
T cd08276 81 VGDRVVPTFFPNWLDGPP------TAEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPDH 132 (336)
T ss_pred CCCEEEEecccccccccc------ccccccc---ccccccC-------------------ceeeeEEEecHHHeEECCCC
Confidence 999999877665554333 2332211 1222122 48999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.+.+.++|.++.....+++|++|+|+|+|++|++++++++++|+ +|+++++++++.+.
T Consensus 133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~ 199 (336)
T cd08276 133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLER 199 (336)
T ss_pred CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 99999999999999999987777889999999999889999999999999999 79999988877654
No 89
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.93 E-value=4.6e-25 Score=194.08 Aligned_cols=168 Identities=20% Similarity=0.222 Sum_probs=140.2
Q ss_pred eeeeEEeccC--CCC----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCC
Q 026140 16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89 (243)
Q Consensus 16 ~~ka~~~~~~--~~~----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v 89 (243)
+||+|++.++ +++ +++++.+.|.|++|||||||++++||+.|...... ....|.++|+|++|+|++ .+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~ 75 (329)
T cd08294 2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN 75 (329)
T ss_pred CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence 6899999994 333 78889999999999999999999999887553221 124688999999999985 44
Q ss_pred CccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC---c
Q 026140 90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H 166 (243)
Q Consensus 90 ~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~---~ 166 (243)
++|++||+|+.. ++|++|++++.. .
T Consensus 76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~ 103 (329)
T cd08294 76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD 103 (329)
T ss_pred CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence 579999999632 268999999999 9
Q ss_pred EEEcCCCCC--h---hhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 167 VVKVDPTVP--P---NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 167 ~~~ip~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
++++|++++ + ..++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus 104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~ 182 (329)
T cd08294 104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA 182 (329)
T ss_pred eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence 999999987 2 2234577899999998878888999999999997 9999999999999999 8999998888876
Q ss_pred cC
Q 026140 241 IG 242 (243)
Q Consensus 241 ~~ 242 (243)
++
T Consensus 183 ~l 184 (329)
T cd08294 183 WL 184 (329)
T ss_pred HH
Confidence 54
No 90
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.93 E-value=7.6e-25 Score=192.04 Aligned_cols=180 Identities=19% Similarity=0.191 Sum_probs=150.2
Q ss_pred eeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||++++++++ ++++++++.|.|+++||+||+.++++|++|...+.|..+. ..+|.++|||++|+|+++ +++.|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~ 78 (325)
T cd05280 1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR 78 (325)
T ss_pred CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence 68999999985 5999999999999999999999999999999988776432 235778999999999998 456799
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|++.+. ..|+..+ |+|++|++++.+.++++|++
T Consensus 79 ~Gd~V~~~~~------------------------~~g~~~~-------------------g~~~~~~~v~~~~~~~lp~~ 115 (325)
T cd05280 79 EGDEVLVTGY------------------------DLGMNTD-------------------GGFAEYVRVPADWVVPLPEG 115 (325)
T ss_pred CCCEEEEccc------------------------ccCCCCC-------------------ceeEEEEEEchhhEEECCCC
Confidence 9999986421 0122122 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhc--CCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~--~~~-~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++++.+++.+.++|.++.... ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.+
T Consensus 116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~ 187 (325)
T cd05280 116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYL 187 (325)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 999999999999999998765443 234 3579999998 9999999999999999 799999888877653
No 91
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.93 E-value=8.9e-25 Score=192.80 Aligned_cols=155 Identities=21% Similarity=0.222 Sum_probs=133.7
Q ss_pred eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCC
Q 026140 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE 108 (243)
Q Consensus 29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~ 108 (243)
+++.+.+.|.|++|||||||.+++||+.|. ++.+.....|.++|.|++|+|+++|+ +|++||+|+..
T Consensus 19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~---~g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~------- 85 (325)
T TIGR02825 19 FELKTVELPPLNNGEVLLEALFLSVDPYMR---VAAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS------- 85 (325)
T ss_pred eEEEeccCCCCCCCcEEEEEEEEecCHHHh---cccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence 888899999999999999999999999654 34333334578999999999999874 59999999742
Q ss_pred CccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc----CCCCChhhh-cccc
Q 026140 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS 183 (243)
Q Consensus 109 c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i----p~~~~~~~a-a~~~ 183 (243)
++|++|++++.+.+.++ |++++++++ +.++
T Consensus 86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~ 120 (325)
T TIGR02825 86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG 120 (325)
T ss_pred ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence 16899999999888877 899999987 6788
Q ss_pred hhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 184 ~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|.+++
T Consensus 121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~ 179 (325)
T TIGR02825 121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL 179 (325)
T ss_pred cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 899999998878899999999999997 9999999999999999 899999888887654
No 92
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=1.2e-24 Score=193.08 Aligned_cols=172 Identities=21% Similarity=0.238 Sum_probs=147.7
Q ss_pred eeeEEeccCCCC---eEEEEEecCCC-CCCeEEEEEeeeecChhhhhhhhCCCC---------------CCCCCeeeecc
Q 026140 17 CRAAIATAPGEP---LVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE 77 (243)
Q Consensus 17 ~ka~~~~~~~~~---~~~~e~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~vlG~e 77 (243)
|||+++.+++++ +.+++.+.|.| .++||+|+++++++|++|..++.+... ....|.++|||
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e 80 (350)
T cd08248 1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD 80 (350)
T ss_pred CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence 689999888875 78889999999 499999999999999999998876421 23568899999
Q ss_pred eeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceee
Q 026140 78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157 (243)
Q Consensus 78 ~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~ 157 (243)
++|+|+++|+++++|++||+|++.+.. ..+ |+|+
T Consensus 81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~ 114 (350)
T cd08248 81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA 114 (350)
T ss_pred eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence 999999999999999999999864321 011 4899
Q ss_pred eeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCC----CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEE
Q 026140 158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE----VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV 232 (243)
Q Consensus 158 ~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~----~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~ 232 (243)
+|+.++.+.++++|+++++++++.+++.+.++|.++.+...+. +|++|+|+|+ |++|++++++++.+|+ +|+++
T Consensus 115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~ 193 (350)
T cd08248 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT 193 (350)
T ss_pred eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence 9999999999999999999999999999999999876666664 4999999997 9999999999999999 78887
Q ss_pred cCC
Q 026140 233 DVI 235 (243)
Q Consensus 233 ~~~ 235 (243)
.++
T Consensus 194 ~~~ 196 (350)
T cd08248 194 CST 196 (350)
T ss_pred eCc
Confidence 754
No 93
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.93 E-value=8.8e-25 Score=194.11 Aligned_cols=181 Identities=28% Similarity=0.402 Sum_probs=150.8
Q ss_pred eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
|||+++..++ ..+++++++.|.|+++||+|+++++++|++|...+.+.. ....|.++|+|++|+|+.+|++++.|++|
T Consensus 1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G 79 (339)
T cd08249 1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG 79 (339)
T ss_pred CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence 6899999884 238889999999999999999999999999988775543 22356789999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|+......|+ +...+ |+|++|++++.+.++++|++++
T Consensus 80 d~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~ 118 (339)
T cd08249 80 DRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDNIS 118 (339)
T ss_pred CEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCCCC
Confidence 999876543221 00012 4899999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+.+++.+++.+.++|.++.+..+. .++++|+|+|+ |++|++++++|+++|+ +|+++. +++|.+.
T Consensus 119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~ 193 (339)
T cd08249 119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDL 193 (339)
T ss_pred HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHH
Confidence 999999999999999987655544 78999999998 8999999999999999 788877 4556544
No 94
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.93 E-value=3.2e-24 Score=188.01 Aligned_cols=176 Identities=24% Similarity=0.322 Sum_probs=150.1
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCc
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
|||+++++++.+ +.+.+.+.|.+.++||+|++.++++|+.|...+.+..+ ...+|.++|+|++|+|+++|+++..
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~ 80 (324)
T cd08244 1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP 80 (324)
T ss_pred CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence 689999876653 56667777778899999999999999999988877542 2356788999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
+++||+|++... ... |+|++|++++...++++|
T Consensus 81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp 113 (324)
T cd08244 81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP 113 (324)
T ss_pred CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence 999999976421 011 489999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++++.+++.+.|+|. +....+++++++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.
T Consensus 114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~ 182 (324)
T cd08244 114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTAL 182 (324)
T ss_pred CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 99999999999999999964 677888999999999996 9999999999999999 89999988877654
No 95
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.93 E-value=2.7e-24 Score=189.00 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=146.4
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCC-CCCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++.+++++ +.+++.+.|.|.++||+||+.++++|+.|.....+.. ....+|.++|||++|+|++.| +.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~ 78 (326)
T cd08289 1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK 78 (326)
T ss_pred CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence 789999988874 7788999999999999999999999999987664321 123458899999999999954 56799
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|++.+.. .|...+ |+|++|+.++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~ 115 (326)
T cd08289 79 PGDEVIVTSYD------------------------LGVSHH-------------------GGYSEYARVPAEWVVPLPKG 115 (326)
T ss_pred CCCEEEEcccc------------------------cCCCCC-------------------CcceeEEEEcHHHeEECCCC
Confidence 99999864320 111112 49999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHh--cC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRT--AN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~--~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++++.+++...|+|.++... .. ...+++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.+
T Consensus 116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~ 187 (326)
T cd08289 116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYL 187 (326)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHH
Confidence 99999999999999998876432 22 334789999998 9999999999999999 899999888877653
No 96
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.93 E-value=4e-24 Score=186.56 Aligned_cols=179 Identities=26% Similarity=0.350 Sum_probs=151.7
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
||++++.+.+.+ +.+.+.+.|.+.++||+||++++++|+.|...+.+..+....|.++|+|++|+|+++|. ..+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~ 78 (320)
T cd08243 1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP 78 (320)
T ss_pred CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence 688998877642 66677777778999999999999999999998887654456678999999999999995 57999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|+..... .+.... |+|++|+.++...++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~ 115 (320)
T cd08243 79 GQRVATAMGG------------------------MGRTFD-------------------GSYAEYTLVPNEQVYAIDSDL 115 (320)
T ss_pred CCEEEEecCC------------------------CCCCCC-------------------cccceEEEcCHHHcEeCCCCC
Confidence 9999865320 111111 389999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++++.+.+.+.++|.++.....+.+|++|+|+|+ |++|++++++|+.+|+ +|+++++++++.+.
T Consensus 116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 182 (320)
T cd08243 116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAAL 182 (320)
T ss_pred CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 999999999999999998877778999999999998 9999999999999999 79999988877654
No 97
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.93 E-value=3.2e-24 Score=188.88 Aligned_cols=173 Identities=27% Similarity=0.290 Sum_probs=150.8
Q ss_pred eeeeEEeccCCC----CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC
Q 026140 16 QCRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD 90 (243)
Q Consensus 16 ~~ka~~~~~~~~----~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~ 90 (243)
.|||+++.+++. ++++++++.|.|.++||+|||.++++|+.|..++.+.+.. ..+|.++|+|++|+|+.+|+++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~ 80 (329)
T cd08250 1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT 80 (329)
T ss_pred CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence 489999998776 4888999999999999999999999999999988776532 46788999999999999999999
Q ss_pred ccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 91 ~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
+|++||+|+... .|+|++|++++.+.++++
T Consensus 81 ~~~~Gd~V~~~~--------------------------------------------------~g~~~s~~~v~~~~~~~i 110 (329)
T cd08250 81 DFKVGDAVATMS--------------------------------------------------FGAFAEYQVVPARHAVPV 110 (329)
T ss_pred CCCCCCEEEEec--------------------------------------------------CcceeEEEEechHHeEEC
Confidence 999999997531 148999999999999999
Q ss_pred CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 171 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
|++ ..+++.+.+.+.++|+++.+...+.+|++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.
T Consensus 111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~ 179 (329)
T cd08250 111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEF 179 (329)
T ss_pred CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHH
Confidence 987 34667788899999998877788999999999997 9999999999999999 79998888776543
No 98
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.93 E-value=2.6e-24 Score=189.20 Aligned_cols=176 Identities=26% Similarity=0.303 Sum_probs=152.0
Q ss_pred eeeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCcc
Q 026140 16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV 92 (243)
Q Consensus 16 ~~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~ 92 (243)
+|||+++.++++. +.+.+.+.|.+.++||+|||.++++|+.|...+.+..+ ....|.++|+|++|+|+++|++++++
T Consensus 1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~ 80 (334)
T PTZ00354 1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF 80 (334)
T ss_pred CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence 5899999988863 66677777888999999999999999999988877543 23345689999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
++||+|+.... + |+|++|++++.+.++++|+
T Consensus 81 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~ 111 (334)
T PTZ00354 81 KEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIPQ 111 (334)
T ss_pred CCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCCC
Confidence 99999975311 1 3899999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++.+++.+.+.+.++|.++.+.....+|++|+|+|+ |.+|++++++|+++|+ +++.+.+++++.+.
T Consensus 112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 180 (334)
T PTZ00354 112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDF 180 (334)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 99999999999999999998777788999999999997 9999999999999999 77778878777654
No 99
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=3.1e-24 Score=186.72 Aligned_cols=171 Identities=23% Similarity=0.253 Sum_probs=146.2
Q ss_pred eeeEEeccCC-CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 17 ~ka~~~~~~~-~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
||++++.+.+ ..+++++.+.|.+.++||+||+.++++|+.|..+.... ..|.++|+|++|+|+++|+++..|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~G 76 (305)
T cd08270 1 MRALVVDPDAPLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAVG 76 (305)
T ss_pred CeEEEEccCCCceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCCC
Confidence 5889998754 12666788888899999999999999999999876522 235789999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|+.... . |+|++|+.++.+.++++|++++
T Consensus 77 d~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip~~~~ 107 (305)
T cd08270 77 ARVVGLGA------------------------------M-------------------GAWAELVAVPTGWLAVLPDGVS 107 (305)
T ss_pred CEEEEecC------------------------------C-------------------cceeeEEEEchHHeEECCCCCC
Confidence 99975310 1 4899999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+++++.+++.+.++|+++..... .+|++|+|+|+ |++|++++++++.+|+ +|+++++++++.+.+
T Consensus 108 ~~~a~~~~~~~~ta~~~~~~~~~-~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~ 173 (305)
T cd08270 108 FAQAATLPVAGVTALRALRRGGP-LLGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGL 173 (305)
T ss_pred HHHHHHhHhHHHHHHHHHHHhCC-CCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 99999999999999998655444 46999999998 9999999999999999 899999888877654
No 100
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.92 E-value=5.8e-24 Score=187.63 Aligned_cols=178 Identities=25% Similarity=0.214 Sum_probs=151.8
Q ss_pred eeeEEeccCCCC-----eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCc
Q 026140 17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 17 ~ka~~~~~~~~~-----~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
|||+++++++++ +..++++.|.|.+++|+|++.++++|+.|...+.+.++....|.++|||++|+|+.+|+++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~ 80 (336)
T cd08252 1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL 80 (336)
T ss_pred CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence 579999998873 444567777888999999999999999999888776554456778999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
|++||+|+..... ..+ |+|++|+.++.+.++++|
T Consensus 81 ~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~~~~~v~~~~~~~ip 114 (336)
T cd08252 81 FKVGDEVYYAGDI---------------------------TRP-------------------GSNAEYQLVDERIVGHKP 114 (336)
T ss_pred CCCCCEEEEcCCC---------------------------CCC-------------------ccceEEEEEchHHeeeCC
Confidence 9999999753210 011 389999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCC-----CCEEEEECC-CHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEI 241 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----g~~VlI~Ga-G~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~ 241 (243)
+++++++++.+++.+.++|.++.+.....+ |++|+|+|+ |++|++++++++.+| + +|+++++++++.++
T Consensus 115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~ 190 (336)
T cd08252 115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAW 190 (336)
T ss_pred CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHH
Confidence 999999999999999999998777777777 999999996 999999999999999 7 89999988877654
No 101
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.92 E-value=8.1e-24 Score=185.87 Aligned_cols=178 Identities=17% Similarity=0.171 Sum_probs=146.8
Q ss_pred eeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 18 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
||+++...+.+ ++++++|.|.|.++||+||++++++|+.|...+.+.++. ...|.++|||++|+|+. .++++|++
T Consensus 1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~ 78 (323)
T TIGR02823 1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE 78 (323)
T ss_pred CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence 67888887774 678999999999999999999999999999988876532 34588899999999988 56678999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|++.... .|...+ |+|++|+.++.+.++++|+++
T Consensus 79 Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~~ 115 (323)
T TIGR02823 79 GDEVIVTGYG------------------------LGVSHD-------------------GGYSQYARVPADWLVPLPEGL 115 (323)
T ss_pred CCEEEEccCC------------------------CCCCCC-------------------ccceEEEEEchhheEECCCCC
Confidence 9999864310 111112 489999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHh--cCCCCCC-EEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 175 PPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~--~~~~~g~-~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++++++.+++.+.+++.++... ..+.+|+ +|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.
T Consensus 116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~ 185 (323)
T TIGR02823 116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDY 185 (323)
T ss_pred CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 9999999998999998765332 3478898 9999998 9999999999999999 78887777766554
No 102
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.92 E-value=1.4e-23 Score=184.57 Aligned_cols=174 Identities=28% Similarity=0.340 Sum_probs=152.5
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
+|||++...+.+ +++++.+.|.|.++||+|++.++++|+.|..++.+.... ..+|.++|+|++|+|+.+|+++..|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~ 80 (331)
T cd08273 1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE 80 (331)
T ss_pred CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence 488999988764 778888999999999999999999999999988776532 34678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+.... . |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (331)
T cd08273 81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG 111 (331)
T ss_pred CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence 9999975421 1 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.+.+.++|.++.+...+.+|++|+|+|+ |++|++++++++.+|+ +|+++++ +++.++
T Consensus 112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~ 178 (331)
T cd08273 112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAA 178 (331)
T ss_pred CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHH
Confidence 9999999999999999998777788999999999998 9999999999999999 8888886 665543
No 103
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.92 E-value=1.8e-23 Score=183.57 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=147.3
Q ss_pred eeeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++.+++. .+++++.+.|.|.++||+|++.++++|+.|...+.+.... ..+|.++|||++|+|++ +++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~ 78 (324)
T cd08288 1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK 78 (324)
T ss_pred CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence 78999998885 3888999999999999999999999999999888776432 24578899999999999 6777899
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+..... .+.... |+|++|++++.+.++++|++
T Consensus 79 ~Gd~V~~~~~~------------------------~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~ 115 (324)
T cd08288 79 PGDRVVLTGWG------------------------VGERHW-------------------GGYAQRARVKADWLVPLPEG 115 (324)
T ss_pred CCCEEEECCcc------------------------CCCCCC-------------------CcceeEEEEchHHeeeCCCC
Confidence 99999864210 110012 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHH--HhcCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++++++.+++.+.+++.++. ...+.. ++++|+|+|+ |++|++++|+|+.+|+ +|++++.+++|.++
T Consensus 116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~ 186 (324)
T cd08288 116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADY 186 (324)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence 999999999989999887543 123444 5789999998 9999999999999999 89998888877654
No 104
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.91 E-value=4.1e-23 Score=179.69 Aligned_cols=180 Identities=29% Similarity=0.368 Sum_probs=154.0
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
||++++..++.+ +++.+++.|.+.+++|+|++.++++|+.|...+.+... ...+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~ 80 (325)
T cd08253 1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK 80 (325)
T ss_pred CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence 578888876543 77788888889999999999999999999988877543 235788999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+...... .... |++++|+.++.+.++++|++
T Consensus 81 ~Gd~v~~~~~~~-------------------------~~~~-------------------g~~~~~~~~~~~~~~~ip~~ 116 (325)
T cd08253 81 VGDRVWLTNLGW-------------------------GRRQ-------------------GTAAEYVVVPADQLVPLPDG 116 (325)
T ss_pred CCCEEEEecccc-------------------------CCCC-------------------cceeeEEEecHHHcEeCCCC
Confidence 999998654200 0011 48999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.+...++|.++....++.+|++++|+|+ |++|++++++++.+|+ +|+++++++++.++
T Consensus 117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 184 (325)
T cd08253 117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAEL 184 (325)
T ss_pred CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 9999999999999999998777788999999999997 9999999999999999 89999988877654
No 105
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.91 E-value=4.7e-23 Score=183.61 Aligned_cols=175 Identities=19% Similarity=0.244 Sum_probs=144.1
Q ss_pred eeeEEeccCCCCeEEEEEecCCC---CCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCC-c
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD-G 91 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~-~ 91 (243)
+|++++.+++.++++++++.|.| .++||+||+.++++|++|+..+.+.... ...|.++|+|++|+|+++|++++ +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~ 80 (352)
T cd08247 1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASE 80 (352)
T ss_pred CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccC
Confidence 47899999998888888877766 8999999999999999999877543221 12477899999999999999998 8
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC----cE
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HV 167 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~----~~ 167 (243)
|++||+|+......|+ .. |+|++|++++.. .+
T Consensus 81 ~~~Gd~V~~~~~~~~~-------------------------~~-------------------g~~~~~~~v~~~~~~~~~ 116 (352)
T cd08247 81 WKVGDEVCGIYPHPYG-------------------------GQ-------------------GTLSQYLLVDPKKDKKSI 116 (352)
T ss_pred CCCCCEEEEeecCCCC-------------------------CC-------------------ceeeEEEEEcccccccee
Confidence 9999999865321110 11 499999999987 78
Q ss_pred EEcCCCCChhhhcccchhhHhHHHHHHHhc-CCCCCCEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEcCC
Q 026140 168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVI 235 (243)
Q Consensus 168 ~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~-~~vi~~~~~ 235 (243)
+++|+++++.+++.+++.+.|+|.++.+.. .+++|++|+|+|+ |.+|++++++|+++|. ..++++.+.
T Consensus 117 ~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~~ 187 (352)
T cd08247 117 TRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSS 187 (352)
T ss_pred EECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeCh
Confidence 999999999999999999999999876666 7899999999998 7999999999999854 356666543
No 106
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.91 E-value=5.7e-23 Score=178.43 Aligned_cols=175 Identities=28% Similarity=0.368 Sum_probs=151.2
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++.+++.+ +.+.+.+.|.+.++||+||++++++|+.|...+.+.++ ...+|.++|||++|+|+++|+++.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (323)
T cd05276 1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK 80 (323)
T ss_pred CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence 689999886653 66777777778899999999999999999988876543 234678999999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+.... + |+|++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~ 111 (323)
T cd05276 81 VGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPEG 111 (323)
T ss_pred CCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCCC
Confidence 9999975321 1 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+...+.++|.++.+...+.++++++|+|+ |++|++++++++++|+ +++++++++++.+.
T Consensus 112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~ 179 (323)
T cd05276 112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEA 179 (323)
T ss_pred CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 9999999999999999998777788999999999998 8999999999999999 89999888776554
No 107
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=9.4e-23 Score=178.26 Aligned_cols=176 Identities=29% Similarity=0.418 Sum_probs=151.0
Q ss_pred eeeEEeccCC--CCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 17 ~ka~~~~~~~--~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
|||+++.+++ ..+++++++.|.+.+++|+||+.++++|+.|+..+.+.......|.++|||++|+|+.+|++++.+++
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~ 80 (325)
T cd08271 1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV 80 (325)
T ss_pred CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence 6999999999 34999999999999999999999999999999887665433234678999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|++.... ..+ |+|++|+.++.+.++++|+++
T Consensus 81 Gd~V~~~~~~---------------------------~~~-------------------~~~~s~~~~~~~~~~~ip~~~ 114 (325)
T cd08271 81 GDRVAYHASL---------------------------ARG-------------------GSFAEYTVVDARAVLPLPDSL 114 (325)
T ss_pred CCEEEeccCC---------------------------CCC-------------------ccceeEEEeCHHHeEECCCCC
Confidence 9999864210 011 389999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
++.+++.+.+.+.+++.++.+..++.+|++++|+|+ |.+|++++++++.+|+ .++++. ++++.+
T Consensus 115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~ 179 (325)
T cd08271 115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFE 179 (325)
T ss_pred CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHH
Confidence 999999999999999998777788999999999998 8999999999999999 777765 444433
No 108
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.91 E-value=8.8e-23 Score=178.11 Aligned_cols=179 Identities=27% Similarity=0.307 Sum_probs=151.5
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC-CCCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++..++++ +++++.+.|.+.+++|+|++.++++|+.|..+..+... ....|.++|+|++|+|+.+|+++.+|+
T Consensus 1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (326)
T cd08272 1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR 80 (326)
T ss_pred CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence 689999988865 77778888888999999999999999999988776543 123477899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+.... +... ..|+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~--------------------------~~~~------------------~~g~~~~~~~v~~~~~~~~p~~ 116 (326)
T cd08272 81 VGDEVYGCAG--------------------------GLGG------------------LQGSLAEYAVVDARLLALKPAN 116 (326)
T ss_pred CCCEEEEccC--------------------------CcCC------------------CCCceeEEEEecHHHcccCCCC
Confidence 9999975421 0000 0148999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++..++.+++.+.++|.++.+..++.+|++++|+|+ |.+|++++++++.+|+ +|++++++ ++.+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~ 183 (326)
T cd08272 117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAF 183 (326)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHH
Confidence 9999999999999999998778889999999999996 9999999999999999 88888876 66543
No 109
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.90 E-value=8.7e-23 Score=178.85 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=142.8
Q ss_pred eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCC
Q 026140 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT 107 (243)
Q Consensus 29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~ 107 (243)
+++++.+.|.+.+++|+||++++++|+.|..++.+.... ...|.++|+|++|+|+++|++++++++||+|++.+.
T Consensus 14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---- 89 (323)
T cd05282 14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---- 89 (323)
T ss_pred EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence 566777888889999999999999999999888765432 346779999999999999999999999999986431
Q ss_pred CCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhH
Q 026140 108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187 (243)
Q Consensus 108 ~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ 187 (243)
. |+|++|+.++.+.++++|+++++.+++.+.+...
T Consensus 90 --------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ 124 (323)
T cd05282 90 --------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL 124 (323)
T ss_pred --------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence 1 3899999999999999999999999999888999
Q ss_pred hHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 188 ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.++.....+.+|++|+|+|+ |.+|++++++|+++|+ +++++.+++++.+.
T Consensus 125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~ 178 (323)
T cd05282 125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEE 178 (323)
T ss_pred HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHH
Confidence 99998877778899999999998 8999999999999999 88888888777654
No 110
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=99.90 E-value=1.2e-23 Score=157.74 Aligned_cols=108 Identities=35% Similarity=0.542 Sum_probs=94.7
Q ss_pred CCeEEEEEeeeecChhhhhhhhC-CCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCC
Q 026140 41 SHEVRVRIICTSLCHSDVTFWKM-KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119 (243)
Q Consensus 41 ~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~ 119 (243)
|+||||||++++||++|++++.+ .......|.++|||++|+|+++|+++++|++||+|+..+...|+.|.+|+.+..++
T Consensus 1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~ 80 (109)
T PF08240_consen 1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL 80 (109)
T ss_dssp TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence 68999999999999999999998 45567899999999999999999999999999999999988899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEc
Q 026140 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170 (243)
Q Consensus 120 ~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 170 (243)
|+.... .|...+| +|+||++++.++++|+
T Consensus 81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v 109 (109)
T PF08240_consen 81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV 109 (109)
T ss_dssp TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence 976654 5555555 9999999999999985
No 111
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.90 E-value=2.8e-22 Score=173.85 Aligned_cols=173 Identities=30% Similarity=0.353 Sum_probs=148.3
Q ss_pred eeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCC
Q 026140 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG 95 (243)
Q Consensus 18 ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~G 95 (243)
||+.+..++.+ +.+.+.+.+.+.++||+|+|.++++|+.|+.+..+.++. .+|.++|||++|+|+.+|+++.+|++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G 79 (320)
T cd05286 1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG 79 (320)
T ss_pred CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence 46666666553 556677777788999999999999999999888776543 457789999999999999999999999
Q ss_pred CEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCC
Q 026140 96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP 175 (243)
Q Consensus 96 d~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~ 175 (243)
|+|+... .. |+|++|+.++.+.++++|++++
T Consensus 80 ~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~ 110 (320)
T cd05286 80 DRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDGIS 110 (320)
T ss_pred CEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCCCC
Confidence 9997531 01 3899999999999999999999
Q ss_pred hhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 176 ~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+.+++.+.+...++|.++....++.+|++|+|+|+ |++|++++++++.+|+ +|+++++++++.++
T Consensus 111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 176 (320)
T cd05286 111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAEL 176 (320)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 99999888899999998777788999999999997 9999999999999999 89999988877654
No 112
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.90 E-value=2.1e-22 Score=175.57 Aligned_cols=165 Identities=26% Similarity=0.403 Sum_probs=137.0
Q ss_pred ccCCCCeEEEEEecCCCCCCeEEEEEeeeecChhhhhhh-hCCCCC--CCCCeeeecceeEEEEEeCCCCCccCCCCEEE
Q 026140 23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVI 99 (243)
Q Consensus 23 ~~~~~~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv 99 (243)
++++. +++++++.|.+.++||+|++.++++|+.|...+ .+.... ..+|.++|+|++|+|+.+|++++++++||+|+
T Consensus 2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~ 80 (312)
T cd08269 2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA 80 (312)
T ss_pred CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence 34554 899999999999999999999999999999887 665322 12478899999999999999999999999998
Q ss_pred eeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhh
Q 026140 100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA 179 (243)
Q Consensus 100 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a 179 (243)
..+. |+|++|+.++.+.++++|+++ ..+
T Consensus 81 ~~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~ 108 (312)
T cd08269 81 GLSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQ 108 (312)
T ss_pred EecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhh
Confidence 6421 389999999999999999988 223
Q ss_pred cccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 180 a~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+....++.++++++. ..++++|++|+|+|+|.+|.+++++|+.+|+..|+++.+.+++.++
T Consensus 109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~ 169 (312)
T cd08269 109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLAL 169 (312)
T ss_pred HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 332367788888754 7889999999999889999999999999999439999888777654
No 113
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.89 E-value=6e-22 Score=172.79 Aligned_cols=180 Identities=33% Similarity=0.391 Sum_probs=151.5
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+++...+.+ +.+.+.+.|.+.+++++|++.++++|+.|..+..+.... ..+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~ 80 (328)
T cd08268 1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA 80 (328)
T ss_pred CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence 578888876643 666777778889999999999999999999887665432 24477899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+..+... +..+ |++++|+.++.+.++++|++
T Consensus 81 ~Gd~V~~~~~~~-------------------------~~~~-------------------g~~~~~~~~~~~~~~~~p~~ 116 (328)
T cd08268 81 VGDRVSVIPAAD-------------------------LGQY-------------------GTYAEYALVPAAAVVKLPDG 116 (328)
T ss_pred CCCEEEeccccc-------------------------cCCC-------------------ccceEEEEechHhcEeCCCC
Confidence 999998653211 1111 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.+.+.++|.++.....+.++++++|+|+ |.+|++++++++..|+ +++++++++.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~ 184 (328)
T cd08268 117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDA 184 (328)
T ss_pred CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 9999999999999999998777788999999999998 9999999999999999 89998888766543
No 114
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.89 E-value=4.9e-22 Score=171.96 Aligned_cols=176 Identities=26% Similarity=0.348 Sum_probs=147.8
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCc
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG 91 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~ 91 (243)
|||++++.++.. +.+.+.+.|.+.++||+|++.++++|+.|...+.+... ....|.++|||++|+|+.+|+++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~ 80 (309)
T cd05289 1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG 80 (309)
T ss_pred CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence 678998887763 45567777778999999999999999999998877542 2345789999999999999999999
Q ss_pred cCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcC
Q 026140 92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171 (243)
Q Consensus 92 ~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 171 (243)
+++||+|+..+.. ... |+|++|+.++...++++|
T Consensus 81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p 114 (309)
T cd05289 81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP 114 (309)
T ss_pred CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence 9999999865310 001 389999999999999999
Q ss_pred CCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+++++..++.+.+.+.++|.++.....+.+|++|+|+|+ |.+|++++++++.+|+ +|+++.+++ +.+
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~ 182 (309)
T cd05289 115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NAD 182 (309)
T ss_pred CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHH
Confidence 999999999999899999998766666899999999997 9999999999999999 788887665 443
No 115
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.89 E-value=9.3e-22 Score=173.06 Aligned_cols=171 Identities=23% Similarity=0.219 Sum_probs=141.0
Q ss_pred eeeEEeccCCC------CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCC
Q 026140 17 CRAAIATAPGE------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGE 87 (243)
Q Consensus 17 ~ka~~~~~~~~------~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~ 87 (243)
+|||++.+.+. .+++++++.|.+.+++|+||+.++++|+.|.....+... +...+.++|+|++|+|+++|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~ 81 (329)
T cd05288 2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS 81 (329)
T ss_pred CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence 67888876652 288899999999999999999999999988765554321 112345789999999999996
Q ss_pred CCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEecc-Cc
Q 026140 88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH 166 (243)
Q Consensus 88 ~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~-~~ 166 (243)
+ +|++||+|+.. ++|++|+.++. +.
T Consensus 82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~ 107 (329)
T cd05288 82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG 107 (329)
T ss_pred C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence 4 79999999632 27999999999 99
Q ss_pred EEEcCCCCC--hhhhcc-cchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 167 ~~~ip~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++++|++++ +.+++. +.+.+.++|+++.....+.++++|+|+|+ |++|++++++++++|+ +|+++++++++.+.+
T Consensus 108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~ 186 (329)
T cd05288 108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL 186 (329)
T ss_pred cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence 999999985 545555 88899999998777778899999999996 9999999999999999 899999888776543
No 116
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.88 E-value=3.2e-21 Score=167.95 Aligned_cols=175 Identities=28% Similarity=0.334 Sum_probs=149.3
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccC
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV 93 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~ 93 (243)
|||+.+..++.+ +++.+.+.|.+.+++++|++.++++|+.|.....+.+.. ..+|.++|||++|+|+.+|+++.+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~ 80 (325)
T TIGR02824 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK 80 (325)
T ss_pred CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence 578888776654 566676666788999999999999999999887665422 34578899999999999999999999
Q ss_pred CCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCC
Q 026140 94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173 (243)
Q Consensus 94 ~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~ 173 (243)
+||+|+.... + |+|++|+.++...++++|++
T Consensus 81 ~Gd~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~ 111 (325)
T TIGR02824 81 VGDRVCALVA------------------------------G-------------------GGYAEYVAVPAGQVLPVPEG 111 (325)
T ss_pred CCCEEEEccC------------------------------C-------------------CcceeEEEecHHHcEeCCCC
Confidence 9999975311 1 38999999999999999999
Q ss_pred CChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++.+++.+.+...++|.++.+...+.++++++|+|+ |++|++++++++.+|+ +|+++.+++++.++
T Consensus 112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 179 (325)
T TIGR02824 112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAA 179 (325)
T ss_pred CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 9999999999999999998778889999999999997 9999999999999999 89999888776543
No 117
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=173.79 Aligned_cols=176 Identities=28% Similarity=0.425 Sum_probs=135.2
Q ss_pred eeeEEeccCCCC---eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCC----CCCeeeecceeEEEEE---eC
Q 026140 17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA----VFPRILGHEAIGVVES---VG 86 (243)
Q Consensus 17 ~ka~~~~~~~~~---~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~vlG~e~~G~Vv~---vG 86 (243)
++.+.+..+.+. ....+.++|.|+++|++|++.++++|+.|..++.+.+... .+|.+++.++.|.+.. +|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g 84 (347)
T KOG1198|consen 5 IRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVG 84 (347)
T ss_pred cceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccc
Confidence 444444444433 3346788999999999999999999999999999877443 4676666666555333 33
Q ss_pred -CCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccC
Q 026140 87 -ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA 165 (243)
Q Consensus 87 -~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~ 165 (243)
..+..+..||.+... ...|+|+||+++|..
T Consensus 85 ~~~~~~~~~g~~~~~~-------------------------------------------------~~~g~~aey~v~p~~ 115 (347)
T KOG1198|consen 85 DDVVGGWVHGDAVVAF-------------------------------------------------LSSGGLAEYVVVPEK 115 (347)
T ss_pred cccccceEeeeEEeec-------------------------------------------------cCCCceeeEEEcchh
Confidence 222334555544321 112599999999999
Q ss_pred cEEEcCCCCChhhhcccchhhHhHHHHHHHhc------CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
.++++|+++++.+||+++.++.|||.++.... +.++|+.|||+|+ |++|++++|+|+..++ ..+++.+++++
T Consensus 116 ~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~ 194 (347)
T KOG1198|consen 116 LLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEK 194 (347)
T ss_pred hccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccch
Confidence 99999999999999999999999999999999 8999999999987 8999999999999996 55555567777
Q ss_pred hhcC
Q 026140 239 FEIG 242 (243)
Q Consensus 239 ~~~~ 242 (243)
++++
T Consensus 195 ~~l~ 198 (347)
T KOG1198|consen 195 LELV 198 (347)
T ss_pred HHHH
Confidence 7664
No 118
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.87 E-value=3e-21 Score=166.78 Aligned_cols=157 Identities=28% Similarity=0.341 Sum_probs=137.1
Q ss_pred cCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccC
Q 026140 36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS 114 (243)
Q Consensus 36 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~ 114 (243)
.|.+.+++|+|++.++++|+.|...+.+.++. ..+|.++|+|++|+|+++|+++.+|++||+|+.....
T Consensus 2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~---------- 71 (303)
T cd08251 2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGE---------- 71 (303)
T ss_pred CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCC----------
Confidence 57788999999999999999999988776532 3568899999999999999999999999999865321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHH
Q 026140 115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194 (243)
Q Consensus 115 ~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~ 194 (243)
.+ |+|++|+.++.+.++++|+++++++++.+++.+.++|.++
T Consensus 72 ------------------~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l- 113 (303)
T cd08251 72 ------------------SM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF- 113 (303)
T ss_pred ------------------CC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence 01 3899999999999999999999999999999999999975
Q ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 195 ~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+...+++|++++|+|+ |.+|++++++++.+|+ +++++.+++++.+.
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 160 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEY 160 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence 6788999999999976 9999999999999999 89999888766554
No 119
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.87 E-value=4.3e-21 Score=167.32 Aligned_cols=163 Identities=26% Similarity=0.294 Sum_probs=139.6
Q ss_pred EEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCC---CCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCC
Q 026140 30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC 106 (243)
Q Consensus 30 ~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~ 106 (243)
++++.+.|.|.++||+|+++++++|+.|...+.+..+ ....|.++|+|++|+|.++|+++.++.+||+|+......
T Consensus 15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~- 93 (319)
T cd08267 15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPK- 93 (319)
T ss_pred ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCC-
Confidence 6678888889999999999999999999998877542 123567899999999999999999999999997653210
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhh
Q 026140 107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186 (243)
Q Consensus 107 ~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~ 186 (243)
.. |+|++|+.++.+.++++|++++..+++.+.+.+
T Consensus 94 --------------------------~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~ 128 (319)
T cd08267 94 --------------------------GG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG 128 (319)
T ss_pred --------------------------CC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence 01 389999999999999999999999999999999
Q ss_pred HhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 187 ~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.++|+++.....+.+|++|+|+|+ |++|++++++|+.+|+ +|++++++ ++.+
T Consensus 129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~ 181 (319)
T cd08267 129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAE 181 (319)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHH
Confidence 999998777777899999999998 9999999999999999 88888754 4443
No 120
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.87 E-value=1.3e-20 Score=163.76 Aligned_cols=174 Identities=32% Similarity=0.446 Sum_probs=146.4
Q ss_pred eeeEEeccCCCC--eEEEEEecCCCC-CCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCcc
Q 026140 17 CRAAIATAPGEP--LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV 92 (243)
Q Consensus 17 ~ka~~~~~~~~~--~~~~e~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~ 92 (243)
|||+++..++.+ +++.+.+ |.+. +++++|++.++++|+.|..++.+.+.. ...|.++|+|++|+|+.+|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~ 79 (323)
T cd08241 1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF 79 (323)
T ss_pred CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence 578888755443 6666766 6666 499999999999999999887765432 2346689999999999999999999
Q ss_pred CCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCC
Q 026140 93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP 172 (243)
Q Consensus 93 ~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~ 172 (243)
++||+|+.... . |++++|+.++.+.++++|+
T Consensus 80 ~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~ 110 (323)
T cd08241 80 KVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLPD 110 (323)
T ss_pred CCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCCC
Confidence 99999986420 1 3899999999999999999
Q ss_pred CCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+++..+++.+.+...++|.++....++.++++|+|+|+ |++|++++++++..|+ .|+++++++++.+.
T Consensus 111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 179 (323)
T cd08241 111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLAL 179 (323)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHH
Confidence 99998888888899999998766788999999999998 9999999999999999 79999888776554
No 121
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.85 E-value=1.7e-20 Score=160.28 Aligned_cols=147 Identities=27% Similarity=0.267 Sum_probs=130.7
Q ss_pred CeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCC
Q 026140 42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS 121 (243)
Q Consensus 42 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~ 121 (243)
+||+||+.++++|+.|.....+.. ..+|.++|+|++|+|+++|+++..|++||+|+...
T Consensus 1 ~~v~i~v~~~~~~~~d~~~~~g~~--~~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~------------------- 59 (293)
T cd05195 1 DEVEVEVKAAGLNFRDVLVALGLL--PGDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA------------------- 59 (293)
T ss_pred CceEEEEEEEecCHHHHHHHhCCC--CCCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence 589999999999999999887754 24578899999999999999999999999997542
Q ss_pred CCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCC
Q 026140 122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV 201 (243)
Q Consensus 122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~ 201 (243)
.|+|++|+.++.+.++++|+++++.+++.+.+...++|.++.+...+++
T Consensus 60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 108 (293)
T cd05195 60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK 108 (293)
T ss_pred -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence 1389999999999999999999999999998999999998777788999
Q ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 202 g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
|++|+|+|+ |.+|++++++++.+|+ +++++++++++.++
T Consensus 109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 148 (293)
T cd05195 109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREF 148 (293)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 999999986 9999999999999999 89999887766544
No 122
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.85 E-value=1.1e-19 Score=159.49 Aligned_cols=158 Identities=25% Similarity=0.304 Sum_probs=136.1
Q ss_pred eeEEeccCCC--CeEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCC-CCCCeeeecceeEEEEEeCCCCCccCC
Q 026140 18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE 94 (243)
Q Consensus 18 ka~~~~~~~~--~~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~vlG~e~~G~Vv~vG~~v~~~~~ 94 (243)
||+++...+. .+.+++.+.|.|.+++|+||+.++++|+.|..++.+.+.. ...|.++|+|++|+|+.+|+++.+|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~ 80 (337)
T cd08275 1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV 80 (337)
T ss_pred CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence 4666665554 2677777778889999999999999999999988775432 245778999999999999999999999
Q ss_pred CCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC
Q 026140 95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV 174 (243)
Q Consensus 95 Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 174 (243)
||+|+.... + |+|++|+.++.+.++++|+++
T Consensus 81 G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~~ 111 (337)
T cd08275 81 GDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDGM 111 (337)
T ss_pred CCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCCC
Confidence 999976421 1 389999999999999999999
Q ss_pred ChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHc
Q 026140 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC 224 (243)
Q Consensus 175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~ 224 (243)
++.+++.+.+.+.++|.++....+.++|++|+|+|+ |.+|++++++++.+
T Consensus 112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~ 162 (337)
T cd08275 112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV 162 (337)
T ss_pred CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc
Confidence 999999999999999998877888999999999998 99999999999998
No 123
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.83 E-value=1.5e-19 Score=154.53 Aligned_cols=142 Identities=27% Similarity=0.267 Sum_probs=127.0
Q ss_pred EEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCC
Q 026140 46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125 (243)
Q Consensus 46 Vkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~ 125 (243)
||+.++++|+.|...+.+.++ .|.++|+|++|+|+++|+.+++|++||+|+....
T Consensus 2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~---------------------- 56 (288)
T smart00829 2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP---------------------- 56 (288)
T ss_pred eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC----------------------
Confidence 789999999999998877543 3578999999999999999999999999975421
Q ss_pred CCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEE
Q 026140 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205 (243)
Q Consensus 126 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~V 205 (243)
|+|++|+.++.+.++++|+++++.+++.+.+.+.++|.++.+...+.+|++|
T Consensus 57 ----------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v 108 (288)
T smart00829 57 ----------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV 108 (288)
T ss_pred ----------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence 3899999999999999999999999999999999999987677889999999
Q ss_pred EEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 206 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 206 lI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+|+|+ |.+|++++++++.+|+ +|+++++++++.++
T Consensus 109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~ 144 (288)
T smart00829 109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDF 144 (288)
T ss_pred EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence 99996 9999999999999999 89999988877654
No 124
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.82 E-value=1.6e-19 Score=154.02 Aligned_cols=160 Identities=26% Similarity=0.288 Sum_probs=127.8
Q ss_pred eEEEEEecCCCCCCeEEEEEeeeecChhhhhhhhCCCCCCCCCeeeecceeEEEEEe--CCCCCccCCCCEEEeeccCCC
Q 026140 29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLADC 106 (243)
Q Consensus 29 ~~~~e~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~vlG~e~~G~Vv~v--G~~v~~~~~Gd~Vv~~~~~~~ 106 (243)
|++++.++|+|++||||||++|.+++|....-++.... =-.|+-+|....|.++.. -|+...|++||.|+..
T Consensus 27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~S-Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~----- 100 (340)
T COG2130 27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAPS-YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV----- 100 (340)
T ss_pred ceeEeccCCCCCcCceEEEEEEeccCHHHeecccCCcc-cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence 99999999999999999999999999954433332221 134555665555554442 2667789999999643
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCC-Chh-hhcccch
Q 026140 107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV-PPN-RACLLSC 184 (243)
Q Consensus 107 ~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~-~~~-~aa~~~~ 184 (243)
.+|++|.+++.+.+.+++... ++. ....+.+
T Consensus 101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm 133 (340)
T COG2130 101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133 (340)
T ss_pred -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence 289999999999999997543 222 2234677
Q ss_pred hhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 185 GVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 185 ~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+..|||.+|++.+..++|++|+|.+| |++|..+.|+||..|+ +||.+..+++|.+.+
T Consensus 134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l 191 (340)
T COG2130 134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFL 191 (340)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHH
Confidence 99999999999999999999999998 9999999999999999 999999999998765
No 125
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.73 E-value=3.9e-17 Score=140.55 Aligned_cols=119 Identities=31% Similarity=0.477 Sum_probs=107.3
Q ss_pred CCCeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceee
Q 026140 69 VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148 (243)
Q Consensus 69 ~~p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 148 (243)
.+|.++|+|++|+|+++|+++++|++||+|+..
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----------------------------------------------- 51 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----------------------------------------------- 51 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence 588999999999999999999999999999753
Q ss_pred cccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 026140 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR 228 (243)
Q Consensus 149 ~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~ 228 (243)
+.|++|++++.+.++++|+++++.+++.+ +.+.++|+++ ...++++|++++|+|+|++|++++++|+.+|+++
T Consensus 52 -----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~ 124 (277)
T cd08255 52 -----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE 124 (277)
T ss_pred -----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 16899999999999999999999998888 7899999975 5788999999999988999999999999999944
Q ss_pred EEEEcCCchhhhc
Q 026140 229 IIGVDVISEKFEI 241 (243)
Q Consensus 229 vi~~~~~~~~~~~ 241 (243)
|+++++++++.++
T Consensus 125 vi~~~~~~~~~~~ 137 (277)
T cd08255 125 VVGVDPDAARREL 137 (277)
T ss_pred EEEECCCHHHHHH
Confidence 9999998888764
No 126
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=99.65 E-value=1.3e-14 Score=123.96 Aligned_cols=173 Identities=21% Similarity=0.193 Sum_probs=125.7
Q ss_pred eeeeEEeccCCC--C----eEE--EEEecC-CCCCCeEEEEEeeeecChhhhhhhhC-CCCCCCCCeeee----cceeEE
Q 026140 16 QCRAAIATAPGE--P----LVI--DEVIVD-PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVFPRILG----HEAIGV 81 (243)
Q Consensus 16 ~~ka~~~~~~~~--~----~~~--~e~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~p~vlG----~e~~G~ 81 (243)
++|.|++..... | |.+ .+.+++ .+++++||||.+|-++.|....-++. +...--.|+.+| ..++|+
T Consensus 3 ~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k 82 (343)
T KOG1196|consen 3 TNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK 82 (343)
T ss_pred cccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence 345566655322 1 333 444544 45899999999999998876544432 111111222222 378999
Q ss_pred EEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEE
Q 026140 82 VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161 (243)
Q Consensus 82 Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~ 161 (243)
|++. +-+++++||.|+... +|.+|.+
T Consensus 83 Vi~S--~~~~~~~GD~v~g~~----------------------------------------------------gWeeysi 108 (343)
T KOG1196|consen 83 VIDS--GHPNYKKGDLVWGIV----------------------------------------------------GWEEYSV 108 (343)
T ss_pred EEec--CCCCCCcCceEEEec----------------------------------------------------cceEEEE
Confidence 9995 556799999996431 7999999
Q ss_pred eccC--cEEEcC--CCCChhhhc-ccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 162 LDIA--HVVKVD--PTVPPNRAC-LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 162 v~~~--~~~~ip--~~~~~~~aa-~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
++.. ..++++ .+.++.... .+.++..|||...++....+.|++|+|.|| |.+|+++.|+|+.+|+ +||+...+
T Consensus 109 i~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS 187 (343)
T KOG1196|consen 109 ITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGS 187 (343)
T ss_pred ecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCC
Confidence 9664 344544 456665544 567799999999889999999999999998 9999999999999999 99999999
Q ss_pred chhhhcCC
Q 026140 236 SEKFEIGE 243 (243)
Q Consensus 236 ~~~~~~~~ 243 (243)
++|.++++
T Consensus 188 ~EKv~ll~ 195 (343)
T KOG1196|consen 188 KEKVDLLK 195 (343)
T ss_pred hhhhhhhH
Confidence 99988763
No 127
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=99.47 E-value=6e-14 Score=136.10 Aligned_cols=143 Identities=19% Similarity=0.107 Sum_probs=125.5
Q ss_pred CCCeEEEEEeeeecChhhhhhhhCCCCCCCC-------CeeeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccc
Q 026140 40 NSHEVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGC 112 (243)
Q Consensus 40 ~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~-------p~vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c 112 (243)
.++.=+--|-|+.||..|+.+.+|+.++... .+++|-||+|+ ..-|.||
T Consensus 1443 ~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv-------------- 1498 (2376)
T KOG1202|consen 1443 CPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV-------------- 1498 (2376)
T ss_pred CCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE--------------
Confidence 5666688999999999999999998766433 37899999998 3568898
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccccceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHH
Q 026140 113 RSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192 (243)
Q Consensus 113 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~ 192 (243)
+|+.... ++++-+.++.+++|.+|++-..++|+..+|.+.|+|+|
T Consensus 1499 ----------------M~mvpAk-------------------sLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYA 1543 (2376)
T KOG1202|consen 1499 ----------------MGMVPAK-------------------SLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYA 1543 (2376)
T ss_pred ----------------EEeeehh-------------------hhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhh
Confidence 4444433 78899999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
++.+...++|++|||+++ |++|++++.+|.+.|+ +|+-+..+.+|++.+
T Consensus 1544 LVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL 1593 (2376)
T KOG1202|consen 1544 LVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFL 1593 (2376)
T ss_pred hhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHH
Confidence 999999999999999955 9999999999999999 999999999998865
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.43 E-value=0.0002 Score=67.16 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=40.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
..++++|+|+|+|++|+++++.|+.+|+ +|++++++++|++.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~a 204 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQV 204 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 4689999999999999999999999999 899999999998875
No 129
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.35 E-value=3.6e-06 Score=77.27 Aligned_cols=126 Identities=18% Similarity=0.158 Sum_probs=81.3
Q ss_pred eeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccc
Q 026140 73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS 152 (243)
Q Consensus 73 vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 152 (243)
.-|.|+++.+.+|+++++..-+|+ +.. ||.|.+| ++.|..... .|...+
T Consensus 89 ~~~~~a~~hl~~Va~GldS~V~GE-----~qI-~gQvk~a----~~~a~~~~~---~g~~l~------------------ 137 (417)
T TIGR01035 89 LTGESAVEHLFRVASGLDSMVVGE-----TQI-LGQVKNA----YKVAQEEKT---VGKVLE------------------ 137 (417)
T ss_pred cCchHHHHHHHHHHhhhhhhhcCC-----hHH-HHHHHHH----HHHHHHcCC---chHHHH------------------
Confidence 468999999999999987744444 444 8888888 333333222 122222
Q ss_pred cceeeeeEEeccCcEEE---c-CCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCe
Q 026140 153 VSSFSEYTVLDIAHVVK---V-DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATR 228 (243)
Q Consensus 153 ~g~~~~~~~v~~~~~~~---i-p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~ 228 (243)
+.|++++.++. .+.. + +..++...+| ...+....+..++++|+|+|+|.+|..+++.++..|+.+
T Consensus 138 -~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~ 206 (417)
T TIGR01035 138 -RLFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK 206 (417)
T ss_pred -HHHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence 37888887764 3322 2 1122222111 111223334578899999999999999999999999768
Q ss_pred EEEEcCCchhhh
Q 026140 229 IIGVDVISEKFE 240 (243)
Q Consensus 229 vi~~~~~~~~~~ 240 (243)
|++++++.++..
T Consensus 207 V~v~~rs~~ra~ 218 (417)
T TIGR01035 207 ILIANRTYERAE 218 (417)
T ss_pred EEEEeCCHHHHH
Confidence 999999887643
No 130
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.19 E-value=0.00088 Score=61.36 Aligned_cols=52 Identities=25% Similarity=0.314 Sum_probs=43.5
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 190 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++.+..+ ..+|++|+|+|.|++|+.+++.++.+|+ +|+++++++.|++.+
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A 241 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQA 241 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHH
Confidence 444555444 4789999999999999999999999999 899999998887654
No 131
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.92 E-value=0.0027 Score=54.21 Aligned_cols=81 Identities=22% Similarity=0.231 Sum_probs=52.7
Q ss_pred eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
+|.+|.. +...++.+++.++|..+. .+.... ....+. ....++++||-+|.|. |.+++.++ ..|+.+|++++.
T Consensus 78 ~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~-~~g~~~v~giDi 150 (250)
T PRK00517 78 SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAA-KLGAKKVLAVDI 150 (250)
T ss_pred CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHH-HcCCCeEEEEEC
Confidence 4555543 667788888888877654 221111 122121 1256899999999986 87777554 467767999999
Q ss_pred CchhhhcC
Q 026140 235 ISEKFEIG 242 (243)
Q Consensus 235 ~~~~~~~~ 242 (243)
++..++.+
T Consensus 151 s~~~l~~A 158 (250)
T PRK00517 151 DPQAVEAA 158 (250)
T ss_pred CHHHHHHH
Confidence 98776644
No 132
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.84 E-value=0.00073 Score=59.71 Aligned_cols=73 Identities=21% Similarity=0.196 Sum_probs=56.0
Q ss_pred cEEEcCCCCChhhhcccchhhHhHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 166 ~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
..+++|+.++.+.++... +..+++.++.... +..++.+|+|+|+|.+|..+++.++..|+.+|++++++.+|.
T Consensus 140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra 215 (311)
T cd05213 140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERA 215 (311)
T ss_pred HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 556778888888777665 5566665532222 224799999999999999999999998877899999988764
No 133
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.64 E-value=0.0094 Score=54.85 Aligned_cols=51 Identities=31% Similarity=0.332 Sum_probs=41.6
Q ss_pred HHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 189 GVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 189 a~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.|.++.+..+. ..|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|..
T Consensus 198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~ 249 (425)
T PRK05476 198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICAL 249 (425)
T ss_pred hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhH
Confidence 35544444344 489999999999999999999999999 8999998887643
No 134
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.61 E-value=0.0048 Score=47.70 Aligned_cols=44 Identities=30% Similarity=0.316 Sum_probs=38.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.--.+++++|+|+|++|.+++..+...|+++++++.|+.+|.+.
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEA 51 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 34578999999999999999999999999889999999887653
No 135
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.31 E-value=0.0065 Score=57.08 Aligned_cols=42 Identities=29% Similarity=0.272 Sum_probs=38.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.++.+|+|+|+|.+|++++++++.+|+ .|+++++++++++.+
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a 203 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV 203 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 467899999999999999999999999 799999999887764
No 136
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.29 E-value=0.011 Score=54.10 Aligned_cols=50 Identities=34% Similarity=0.409 Sum_probs=40.6
Q ss_pred HHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 190 ~~~l~~~~~-~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+.++.+..+ ...|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|..
T Consensus 182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~ 232 (406)
T TIGR00936 182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRAL 232 (406)
T ss_pred HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHH
Confidence 333444434 4789999999999999999999999999 8999988876643
No 137
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.93 E-value=0.0095 Score=54.92 Aligned_cols=127 Identities=20% Similarity=0.148 Sum_probs=75.0
Q ss_pred eeecceeEEEEEeCCCCCccCCCCEEEeeccCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeecccc
Q 026140 73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS 152 (243)
Q Consensus 73 vlG~e~~G~Vv~vG~~v~~~~~Gd~Vv~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~ 152 (243)
.-|+|+++.+.+|+++++..-+|+.-+ ||.|... + +.|..... .|...+
T Consensus 91 ~~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk~a---~-~~a~~~g~---~g~~l~------------------ 139 (423)
T PRK00045 91 HEGEEAVRHLFRVASGLDSMVLGEPQI------LGQVKDA---Y-ALAQEAGT---VGTILN------------------ 139 (423)
T ss_pred cCCHHHHHHHHHHHhhhhhhhcCChHH------HHHHHHH---H-HHHHHcCC---chHHHH------------------
Confidence 469999999999999988766666433 3333311 1 11111110 010001
Q ss_pred cceeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhc---CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeE
Q 026140 153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRI 229 (243)
Q Consensus 153 ~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~v 229 (243)
+.|++.+.+ |+.+..+.+.. ..+.+.++.++.... ...++++|+|+|+|.+|.++++.++..|+.+|
T Consensus 140 -~lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V 209 (423)
T PRK00045 140 -RLFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI 209 (423)
T ss_pred -HHHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence 244443333 34333322222 224444455432221 23678999999999999999999999998789
Q ss_pred EEEcCCchhhh
Q 026140 230 IGVDVISEKFE 240 (243)
Q Consensus 230 i~~~~~~~~~~ 240 (243)
++++++.++..
T Consensus 210 ~v~~r~~~ra~ 220 (423)
T PRK00045 210 TVANRTLERAE 220 (423)
T ss_pred EEEeCCHHHHH
Confidence 99999887743
No 138
>PLN02494 adenosylhomocysteinase
Probab=95.87 E-value=0.021 Score=53.03 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=40.7
Q ss_pred HHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 190 ~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
+.++.+..+. ..|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~ 290 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICA 290 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhh
Confidence 4445555443 679999999999999999999999999 899999887653
No 139
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.70 E-value=0.043 Score=48.20 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
-.+++++|+|.|.+|+.+++.++.+|+ +|++++++.++.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~ 189 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLA 189 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 368999999999999999999999999 9999999977643
No 140
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.46 E-value=0.03 Score=53.42 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=33.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
....|++|+|+|+|+.|+.+++.++.+|+ +|++++..
T Consensus 133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~ 169 (564)
T PRK12771 133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAG 169 (564)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 36789999999999999999999999999 79988854
No 141
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.32 E-value=0.064 Score=46.80 Aligned_cols=41 Identities=29% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++|+|+|+|+.|.+++..+..+|+.+|++++++.+|.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~ 165 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAA 165 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 45689999999999999999999999989999999987754
No 142
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.31 E-value=0.029 Score=50.78 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=34.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~ 204 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLR 204 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHH
Confidence 45679999999999999999999999 8999999877654
No 143
>PRK08324 short chain dehydrogenase; Validated
Probab=95.18 E-value=0.026 Score=55.10 Aligned_cols=74 Identities=22% Similarity=0.233 Sum_probs=53.4
Q ss_pred eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
++++|..++...++.+ +..+.+++..... ......+|+++||.|+ |++|..+++.+...|+ +|++++
T Consensus 386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~ 453 (681)
T PRK08324 386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD 453 (681)
T ss_pred hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence 5677777777666666 5555555532110 0122347899999997 9999999999999999 899999
Q ss_pred CCchhhh
Q 026140 234 VISEKFE 240 (243)
Q Consensus 234 ~~~~~~~ 240 (243)
++.++++
T Consensus 454 r~~~~~~ 460 (681)
T PRK08324 454 LDEEAAE 460 (681)
T ss_pred CCHHHHH
Confidence 9887654
No 144
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.10 E-value=0.056 Score=43.68 Aligned_cols=40 Identities=40% Similarity=0.478 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
.-.|++|.|+|.|.+|..+++.++.+|+ +|++.++.....
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~ 72 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPE 72 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChh
Confidence 3568999999999999999999999999 999999987653
No 145
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.04 E-value=0.092 Score=45.56 Aligned_cols=43 Identities=26% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+...+++++|+|+|+.+.+++..+..+|+.+++++.|+.+|.+
T Consensus 118 ~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~ 160 (272)
T PRK12550 118 QVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGK 160 (272)
T ss_pred CCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHH
Confidence 4445679999999999999999999999988999999987754
No 146
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.01 E-value=0.056 Score=43.27 Aligned_cols=39 Identities=31% Similarity=0.400 Sum_probs=32.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+..+|+|+|+|.+|+.++.+++.+|+ +++..+...++++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~ 57 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLR 57 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHH
Confidence 44789999999999999999999999 8999998877654
No 147
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.90 E-value=0.11 Score=45.37 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=35.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
-.|++++|+|.|.+|.+++..++.+|+ +|++.+++.++.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~ 187 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADL 187 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 368999999999999999999999999 999999988764
No 148
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=94.89 E-value=0.041 Score=47.33 Aligned_cols=46 Identities=35% Similarity=0.536 Sum_probs=37.6
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCchhhhcC
Q 026140 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIG 242 (243)
Q Consensus 196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~-~vi~~~~~~~~~~~~ 242 (243)
.+.+++|++||.+|.|. |..+.++++..+.. +|++++.+++.++.+
T Consensus 72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A 118 (272)
T PRK11873 72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKA 118 (272)
T ss_pred hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHH
Confidence 35678999999999877 88888888887753 699999999877654
No 149
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=94.83 E-value=0.12 Score=42.75 Aligned_cols=41 Identities=34% Similarity=0.449 Sum_probs=36.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.-.|++++|+|.|.+|..+++.+...|+ +|++.+++.++.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~ 65 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVA 65 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 3568899999999999999999999999 9999998887654
No 150
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.80 E-value=0.14 Score=41.11 Aligned_cols=60 Identities=15% Similarity=0.134 Sum_probs=43.8
Q ss_pred hcccchhhHhHHHHHHHhcCCCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 179 aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
....+|....+...+........|++|+|+|+|. +|..++.+++..|+ +|+++.++.+++
T Consensus 21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l 81 (168)
T cd01080 21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNL 81 (168)
T ss_pred CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhH
Confidence 3445555555555444444457899999999986 69999999999999 888888876544
No 151
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=94.78 E-value=0.094 Score=45.75 Aligned_cols=43 Identities=35% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
...|++++|+|+|+.+.+++..++..|+.+++++.|+.+|.+.
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~ 165 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEE 165 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 3458999999999999999999999998899999999988654
No 152
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=94.64 E-value=0.11 Score=45.46 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++++|+|+|+.+.+++..+...|+.+++++.|+.+|.+
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~ 165 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQ 165 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence 45789999999999999998888899989999999887754
No 153
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.61 E-value=0.063 Score=46.76 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++++|+|+|+.+.+++..+..+|+.+++++.|+.+|.+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~ 163 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLS 163 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 35789999999999999999999999989999999987754
No 154
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.50 E-value=0.15 Score=44.31 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=36.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
...+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~ 161 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAE 161 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 356789999999999999999999999669999999987754
No 155
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=94.27 E-value=0.22 Score=46.51 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
.-.|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a 290 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICA 290 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence 4689999999999999999999999999 899998776554
No 156
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=93.94 E-value=0.19 Score=43.87 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++++|+|+|++|.+++..+...|+.+|+++.|+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4578999999999999988888889996799999886
No 157
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.93 E-value=0.24 Score=40.32 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=34.0
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+.+++|+|+ |.+|..++..+...|+ +|+++.++.++.+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~ 66 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQ 66 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 46789999997 9999998888888898 8999998877643
No 158
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.70 E-value=0.15 Score=48.71 Aligned_cols=45 Identities=13% Similarity=0.151 Sum_probs=38.7
Q ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 195 ~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
...+.+.|++|||.|+ |.+|..+++.+...|+ +|++++|+.++++
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~ 118 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAE 118 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHH
Confidence 3456788999999998 9999999999989999 8999999887653
No 159
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.65 E-value=0.2 Score=34.66 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=29.8
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+|+|+|+|.+|+-++..++.+|. +|+.+.+++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch
Confidence 58999999999999999999999 8999988764
No 160
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.46 E-value=0.22 Score=43.52 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..+++++|+|+|+.+.+++..+...|+.+++++.|+++
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 46789999999999988777777789989999999853
No 161
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=93.39 E-value=0.36 Score=40.68 Aligned_cols=37 Identities=32% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~ 235 (243)
.-.+.+++|+|+|+.|..++..+...|++ +++.++++
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 35678999999999999999998899997 89999998
No 162
>PRK05866 short chain dehydrogenase; Provisional
Probab=93.30 E-value=0.16 Score=44.16 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=33.8
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.+++++|.|+ |++|...++.+...|+ +|++++++.++++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~ 78 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLD 78 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 4678999998 9999999999888999 9999999876643
No 163
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.17 E-value=0.31 Score=38.89 Aligned_cols=41 Identities=27% Similarity=0.421 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
..-.|++++|.|-|.+|...++.++.+|+ +|++++.++-+.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~a 59 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRA 59 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHH
Confidence 35689999999999999999999999999 999999988664
No 164
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=93.16 E-value=0.33 Score=44.70 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=38.1
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
......+++++|+|+|.+|.+++..+...|+.+++++.|+.+|.+
T Consensus 175 ~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~ 219 (414)
T PRK13940 175 QLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQ 219 (414)
T ss_pred HhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence 334467899999999999999999999999878999999877643
No 165
>PRK04148 hypothetical protein; Provisional
Probab=93.12 E-value=0.14 Score=39.56 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=33.5
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
....++.+++++|.| .|..++..+..+|. +|+++|.+++..+.
T Consensus 12 ~~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~ 54 (134)
T PRK04148 12 YEKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEK 54 (134)
T ss_pred cccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence 334567899999998 88755666668899 99999999987654
No 166
>PRK06196 oxidoreductase; Provisional
Probab=92.83 E-value=0.2 Score=43.86 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=34.0
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.+++++|.|+ |++|..++..+...|+ +|++++++.++.+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~ 64 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAR 64 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 5789999998 8999999998888999 8999999877653
No 167
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.71 E-value=0.63 Score=36.06 Aligned_cols=41 Identities=34% Similarity=0.366 Sum_probs=34.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++++|+|.|.+|..+++.+...|..+|++++++.++.+
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~ 57 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAK 57 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHH
Confidence 56789999999999999998888887448999998876654
No 168
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.68 E-value=0.19 Score=44.47 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=34.4
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.|++++|.|+ +++|...+......|+ +|+++++++++++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~ 91 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLK 91 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHH
Confidence 5889999998 8999998888888899 8999999988764
No 169
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.62 E-value=0.45 Score=41.03 Aligned_cols=41 Identities=24% Similarity=0.218 Sum_probs=34.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
...+++++|+|+|++|.+++..+...|+ +|++++++.++.+
T Consensus 114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~ 154 (270)
T TIGR00507 114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAE 154 (270)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 3567899999999999999988888898 8999999877653
No 170
>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B.
Probab=91.97 E-value=0.17 Score=26.73 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=15.6
Q ss_pred eeeEEeccCCCCeEEEEEecCCC
Q 026140 17 CRAAIATAPGEPLVIDEVIVDPP 39 (243)
Q Consensus 17 ~ka~~~~~~~~~~~~~e~~~p~~ 39 (243)
|||+++.++++ .++++++.|.+
T Consensus 1 MkAv~y~G~~~-v~ve~VpdP~I 22 (23)
T PF13823_consen 1 MKAVVYHGPKD-VRVEEVPDPKI 22 (23)
T ss_dssp -EEEEEEETTE-EEEEEE----S
T ss_pred CcceEEeCCCc-eEEEECCCccc
Confidence 79999999998 99999988864
No 171
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.49 E-value=0.43 Score=40.80 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..+-.+++|+|+|.++..++++|+.+|+ +|+++|..++
T Consensus 97 ~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~ 134 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA 134 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence 4677899999999999999999999999 8999886654
No 172
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.39 E-value=0.24 Score=36.29 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|++|||+|+|.+|..-++.+...|+ +|++++...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence 67899999999999999999999999 899998773
No 173
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=91.07 E-value=0.54 Score=42.84 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=42.8
Q ss_pred hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.-...+..+....++++|++||-+|.| .|..+..+++..|+ +|++++.+++.++.+
T Consensus 151 Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A 206 (383)
T PRK11705 151 AQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLA 206 (383)
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence 333444556677888999999999874 56667788888898 999999998877654
No 174
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.84 E-value=0.44 Score=46.41 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..++.+|. +|+++++.+
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~ 360 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP 360 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 358899999999999999999999999 899998654
No 175
>PLN02928 oxidoreductase family protein
Probab=90.75 E-value=0.52 Score=42.35 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-.|+++.|+|.|.+|..+++.++.+|+ +|++.+++
T Consensus 157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~ 191 (347)
T PLN02928 157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRS 191 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 458899999999999999999999999 99999876
No 176
>PLN00203 glutamyl-tRNA reductase
Probab=90.65 E-value=0.79 Score=43.47 Aligned_cols=41 Identities=20% Similarity=0.372 Sum_probs=36.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~ 304 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVA 304 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHH
Confidence 34789999999999999999999999878999999987754
No 177
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.45 E-value=0.59 Score=42.95 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=33.2
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
.+++++|.|+ |++|.+.+......|+ +|++++++++++
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l 215 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKI 215 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence 5789999998 9999999988888999 899999877654
No 178
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=90.44 E-value=1.1 Score=38.99 Aligned_cols=41 Identities=24% Similarity=0.393 Sum_probs=31.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
..++++||-+|.|. |.+++.+++ .|+.+|++++.++..++.
T Consensus 157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~ 197 (288)
T TIGR00406 157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVES 197 (288)
T ss_pred cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHH
Confidence 46789999999877 777766665 577699999999876543
No 179
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=90.24 E-value=0.52 Score=44.81 Aligned_cols=40 Identities=33% Similarity=0.458 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++++|+|+|++|.+++..+...|+ +|+++.++.++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~ 416 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAK 416 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHH
Confidence 346899999999999999999999999 9999998877654
No 180
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=89.89 E-value=0.64 Score=43.39 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..++..|. .|++++..+
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~ 174 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHP 174 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 367899999999999999999999999 788887654
No 181
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=89.89 E-value=1.6 Score=30.57 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
..+++++|+|.|.+|..+++.+...+..++.+.++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 56789999999999999999999886547777654
No 182
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.88 E-value=1.4 Score=38.46 Aligned_cols=56 Identities=16% Similarity=0.171 Sum_probs=41.0
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
+++|+....+.. +...+ --.|++++|+|.|. +|.-++.++...|+ +|+++.+....
T Consensus 137 ~~PcTp~ai~~l-l~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~~ 194 (286)
T PRK14175 137 FVPCTPLGIMEI-LKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSKD 194 (286)
T ss_pred CCCCcHHHHHHH-HHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchh
Confidence 456555555553 34433 46899999999965 99999999999999 88888775543
No 183
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=89.55 E-value=0.63 Score=38.06 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=38.2
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhcC
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIG 242 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~~ 242 (243)
....+.++++|+-+|+|. |.+++.+++.++ ..+|++++.+++.++.+
T Consensus 34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a 81 (198)
T PRK00377 34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLT 81 (198)
T ss_pred HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHH
Confidence 456788999999999987 888888888764 23899999998877654
No 184
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.43 E-value=0.8 Score=40.86 Aligned_cols=36 Identities=39% Similarity=0.516 Sum_probs=32.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.|++|.|+|.|.+|..+++.++.+|. +|++.++...
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~ 184 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRK 184 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCC
Confidence 57899999999999999999999999 8999997653
No 185
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.39 E-value=0.77 Score=40.56 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|++|.|+|-|.+|..+++.++.+|. +|++.++..
T Consensus 143 L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~ 178 (311)
T PRK08410 143 IKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG 178 (311)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence 368999999999999999999999999 999998753
No 186
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=89.20 E-value=0.83 Score=40.68 Aligned_cols=33 Identities=48% Similarity=0.725 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
.|+||-|+|.|.+|..+++.++.+|. +|++.++
T Consensus 141 ~gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~ 173 (324)
T COG0111 141 AGKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP 173 (324)
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence 38899999999999999999999999 9999998
No 187
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=89.17 E-value=0.4 Score=41.58 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=33.2
Q ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.+.+.+++++|++||-+|.| -|..+..+++..|+ +|++++.+++..+.+
T Consensus 53 ~~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a 101 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYA 101 (273)
T ss_dssp HHHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHH
T ss_pred HHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHH
Confidence 35678899999999999875 45666678888899 999999998776643
No 188
>PRK06720 hypothetical protein; Provisional
Probab=88.91 E-value=1.1 Score=35.85 Aligned_cols=38 Identities=26% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
.+++++|.|+ +++|...+......|+ +|++++++.++.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~ 53 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESG 53 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHH
Confidence 5789999998 7999999888888899 899999876543
No 189
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=88.91 E-value=0.91 Score=37.44 Aligned_cols=36 Identities=31% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|..++..+..+|+.+++.+|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 557899999999999999999999999999999763
No 190
>PRK08328 hypothetical protein; Provisional
Probab=88.80 E-value=0.88 Score=38.40 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+.+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999999999998554
No 191
>PRK06484 short chain dehydrogenase; Validated
Probab=88.79 E-value=0.77 Score=43.06 Aligned_cols=40 Identities=33% Similarity=0.326 Sum_probs=34.8
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..|+++||.|+ +++|...++.+...|+ +|++++++.++++
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~ 307 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAK 307 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 46789999998 8999999999999999 9999999876654
No 192
>PRK06932 glycerate dehydrogenase; Provisional
Probab=88.71 E-value=0.85 Score=40.38 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|++|.|+|-|.+|..+++.++.+|+ +|+..++..
T Consensus 146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~ 180 (314)
T PRK06932 146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKG 180 (314)
T ss_pred CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCc
Confidence 57899999999999999999999999 899988653
No 193
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.57 E-value=0.92 Score=40.20 Aligned_cols=35 Identities=31% Similarity=0.364 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-.|++|.|+|-|.+|..+++.++.+|. +|++.++.
T Consensus 146 l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~~ 180 (317)
T PRK06487 146 LEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQLP 180 (317)
T ss_pred cCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCC
Confidence 357899999999999999999999999 99998865
No 194
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=88.51 E-value=1.2 Score=35.24 Aligned_cols=35 Identities=31% Similarity=0.280 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-.|++|+|+|+|.+|.--++.+...|+ +|++++..
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCc
Confidence 468999999999999998988888999 88877543
No 195
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.50 E-value=1 Score=39.70 Aligned_cols=36 Identities=28% Similarity=0.269 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|++|.|+|-|.+|..+++.++.+|+ +|++.+++.
T Consensus 120 L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~ 155 (303)
T PRK06436 120 LYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY 155 (303)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 468999999999999999999999999 999999763
No 196
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=88.46 E-value=2.2 Score=36.71 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
-.+|.+|+|.|-|.+|+.+++++..+|+ +|+++..
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVsD 69 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLSD 69 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3568999999999999999999999999 8886654
No 197
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=88.36 E-value=0.99 Score=38.37 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=32.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.+.+|+|+|+|++|..++..+..+|.++++.+|...-
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 3478999999999999999999999999999886653
No 198
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=88.34 E-value=1.1 Score=39.95 Aligned_cols=37 Identities=38% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
.|.+|.|+|.|.+|..++..++.+|. +|++.+++.++
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~ 181 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK 181 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence 67899999999999999999999999 99999987643
No 199
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.28 E-value=2.2 Score=39.09 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=42.0
Q ss_pred hhhcccchhhHhHHHHHHHhcCC-CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 177 NRACLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 177 ~~aa~~~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.+|-...+.+.+- .+....+. -.|.+|.|.|.|.+|+.+++.+..+|+ +||+++.+..
T Consensus 183 ~~aTg~Gv~~~~~--~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g 241 (411)
T COG0334 183 SEATGYGVFYAIR--EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG 241 (411)
T ss_pred CcccceehHHHHH--HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence 3444444333333 23344444 599999999999999999999999999 8998887654
No 200
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=88.09 E-value=1.1 Score=39.69 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..|++|.|+|-|.+|..+++.++.+|+ +|++.++..+
T Consensus 134 l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~ 170 (312)
T PRK15469 134 REDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRK 170 (312)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 367899999999999999999999999 8999987654
No 201
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.05 E-value=0.89 Score=44.21 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=31.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~ 343 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP 343 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence 48999999999999999999999999 899988765
No 202
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.99 E-value=1.1 Score=32.78 Aligned_cols=48 Identities=23% Similarity=0.310 Sum_probs=36.8
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.......++++|+-+|.|. |..+..+++..+..+|++++.++...+.+
T Consensus 12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a 59 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLI 59 (124)
T ss_pred HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHH
Confidence 3455677788999998866 88888888887545899999988766543
No 203
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=87.96 E-value=1.2 Score=29.99 Aligned_cols=29 Identities=31% Similarity=0.299 Sum_probs=25.2
Q ss_pred EECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 207 IFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 207 I~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
|+|+|..|+.++..++..|. +|.++.+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence 68999999999999998999 999998775
No 204
>PRK14031 glutamate dehydrogenase; Provisional
Probab=87.90 E-value=2.1 Score=39.76 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
-..|.+|+|.|.|.+|..+++++..+|+ +|+++.-
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GA-kVVaVSD 259 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGG-KVVTMSD 259 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 3578999999999999999999999999 8888654
No 205
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.90 E-value=1.1 Score=40.23 Aligned_cols=43 Identities=26% Similarity=0.301 Sum_probs=34.8
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHH-cCCCeEEEEcCCchhhhc
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEI 241 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~-~g~~~vi~~~~~~~~~~~ 241 (243)
...+++|+|.|+ |.+|..+++.+.. .|..+++.+.++.+++..
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~ 196 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE 196 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH
Confidence 357799999999 8999998888864 577789999998776643
No 206
>PRK12831 putative oxidoreductase; Provisional
Probab=87.84 E-value=1.1 Score=41.74 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~~ 173 (464)
T PRK12831 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEALH 173 (464)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 3568899999999999999999999999 898887543
No 207
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=87.82 E-value=2.1 Score=35.82 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=29.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEE-EcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG-VDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~-~~~~ 235 (243)
...|.+|+|.|-|.+|+.+++++..+|+ ++++ .+++
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~-~vV~vsD~~ 56 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGG-KVLAVSDPD 56 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEcCC
Confidence 4578999999999999999999999999 5555 4443
No 208
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.71 E-value=1.2 Score=36.67 Aligned_cols=35 Identities=37% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
...+|+|+|+|++|..+++.+...|.++++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999889999977
No 209
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=87.55 E-value=2 Score=39.94 Aligned_cols=36 Identities=25% Similarity=0.302 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-..|.+|+|.|.|.+|..+++.+..+|+ +|+++.-+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~ 269 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDS 269 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 3578999999999999999999999999 88855433
No 210
>PRK06701 short chain dehydrogenase; Provisional
Probab=87.44 E-value=1.3 Score=38.36 Aligned_cols=38 Identities=32% Similarity=0.143 Sum_probs=32.2
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+++++||.|+ |.+|..++..+...|+ +|++++++.
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~ 80 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDE 80 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 3456789999998 8999999988888999 888888765
No 211
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=87.44 E-value=1.7 Score=40.81 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..+++++|+|+|++|.+++..+...|+ ++++.+++.++.+
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~ 369 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAE 369 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 357899999999999999999999999 8999888876654
No 212
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=87.37 E-value=2 Score=39.15 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=33.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..-.|++|.|+|.|.+|..+++.++.+|. +|++.++.
T Consensus 112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp~ 148 (381)
T PRK00257 112 VDLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDPP 148 (381)
T ss_pred CCcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCc
Confidence 34578999999999999999999999999 99999864
No 213
>PRK07985 oxidoreductase; Provisional
Probab=87.35 E-value=1.2 Score=38.62 Aligned_cols=35 Identities=20% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..++++||.|+ |++|..+++.+...|+ +|+++.++
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~ 82 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP 82 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence 46789999998 8999999999999999 88887654
No 214
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.29 E-value=3.1 Score=36.35 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=33.2
Q ss_pred CCCCCEEEEECCCH-HHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 199 VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 199 ~~~g~~VlI~GaG~-vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
.-.|++++|+|.|. +|..++.++...|+ +|+++.+....
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~ 195 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQN 195 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchh
Confidence 46899999999976 99999999999999 88888775443
No 215
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.28 E-value=1.1 Score=43.79 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..+++|+|+|+|+.|+.++..+..+|. +|++++..+.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~ 227 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQ 227 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence 457899999999999999999999999 8999886643
No 216
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.23 E-value=1.1 Score=41.73 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+.+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 457899999999999999999999999 898888654
No 217
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=87.12 E-value=1.4 Score=31.15 Aligned_cols=37 Identities=32% Similarity=0.407 Sum_probs=30.5
Q ss_pred EEEEECCCHHHHHHHHHHHHcC---CCeEEEE-cCCchhhhc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCG---ATRIIGV-DVISEKFEI 241 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g---~~~vi~~-~~~~~~~~~ 241 (243)
+|.|+|+|.+|.+.+.-....| . +|+.+ .+++++.+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~ 41 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAE 41 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHH
Confidence 5778899999999999988888 6 77744 889887654
No 218
>PLN02686 cinnamoyl-CoA reductase
Probab=87.09 E-value=1.4 Score=39.74 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=32.4
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
...+++|||.|+ |.+|..++..+...|+ +|+++.++.++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~ 89 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQED 89 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence 356789999998 9999999999999999 88887666443
No 219
>PRK06128 oxidoreductase; Provisional
Probab=87.03 E-value=1.3 Score=38.50 Aligned_cols=35 Identities=29% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..++++||.|+ |++|..++..+...|+ +|+.+.++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~ 88 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLP 88 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 35789999998 9999999999888999 88877654
No 220
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.02 E-value=1.5 Score=37.39 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+...|.++++.+|...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 457899999999999999999999999999988654
No 221
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=86.88 E-value=1.4 Score=40.07 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
+...+.+|||.|+ |.+|..++..+...|. +|++++++..+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~ 96 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSG 96 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhh
Confidence 3456789999998 9999999999888999 89999987643
No 222
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.65 E-value=1.4 Score=40.62 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=31.3
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++||.|+ |++|..+++.+...|+ +|+++++..
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~ 244 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPA 244 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 35789999998 9999999999999999 899888743
No 223
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=86.55 E-value=12 Score=33.25 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=48.2
Q ss_pred eeeeeEEeccCcEEEcCCCCChhhhcccchhhHhHHHHHHHhcC---CCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeE
Q 026140 155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI 229 (243)
Q Consensus 155 ~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~g~~VlI~Ga-G~vG~~~v~la~-~~g~~~v 229 (243)
.|-+|.++..+..+. .+....++++-+ -+.|.|. +.+... .-..+.|+|..| +-+++..+..++ ..+..++
T Consensus 90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~ 165 (314)
T PF11017_consen 90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV 165 (314)
T ss_pred hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence 566777776544331 122223344444 5667765 333332 233467777788 788888888887 5555589
Q ss_pred EEEcCCchh
Q 026140 230 IGVDVISEK 238 (243)
Q Consensus 230 i~~~~~~~~ 238 (243)
|.+.+..++
T Consensus 166 vglTS~~N~ 174 (314)
T PF11017_consen 166 VGLTSARNV 174 (314)
T ss_pred EEEecCcch
Confidence 999977655
No 224
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=86.36 E-value=0.98 Score=32.71 Aligned_cols=40 Identities=40% Similarity=0.610 Sum_probs=30.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhhcC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~~~ 242 (243)
|+++||-+|.|. |..+..+++ ..++ +|++++.+++-++.+
T Consensus 1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a 41 (112)
T PF12847_consen 1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIA 41 (112)
T ss_dssp TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHH
T ss_pred CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHH
Confidence 678999998643 666667777 4677 899999998776654
No 225
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.28 E-value=1.5 Score=39.24 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=32.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 457899999999999999999999998999998764
No 226
>PRK07574 formate dehydrogenase; Provisional
Probab=86.27 E-value=1.4 Score=40.12 Aligned_cols=35 Identities=34% Similarity=0.369 Sum_probs=32.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|++|.|+|.|.+|..+++.++.+|. +|++.++..
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCC
Confidence 57899999999999999999999999 999999875
No 227
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=86.24 E-value=1.4 Score=43.12 Aligned_cols=38 Identities=24% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
.++++||.|+ |++|..+++.+...|+ +|++++++.++.
T Consensus 413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~ 451 (676)
T TIGR02632 413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAA 451 (676)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHH
Confidence 4789999998 9999999998888999 999999887654
No 228
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.17 E-value=1.6 Score=36.36 Aligned_cols=36 Identities=25% Similarity=0.237 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..+++.+..+|..+++.+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 456899999999999999999999998899998763
No 229
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.06 E-value=1.6 Score=40.08 Aligned_cols=36 Identities=31% Similarity=0.354 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|+++.|+|-|.+|..+++.++.+|. +|++.++..
T Consensus 149 L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~~~ 184 (409)
T PRK11790 149 VRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDIED 184 (409)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCc
Confidence 367899999999999999999999999 999999754
No 230
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=86.04 E-value=1.7 Score=36.44 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 357899999999999999999999999999987654
No 231
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=85.95 E-value=1.2 Score=39.50 Aligned_cols=42 Identities=24% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
...|.+++|.|+ +++|...+.-....|+ +||...|+.++.+.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~ 74 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEE 74 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHH
Confidence 345688899999 9999999999999998 99999999876554
No 232
>PRK14030 glutamate dehydrogenase; Provisional
Probab=85.78 E-value=3.2 Score=38.62 Aligned_cols=33 Identities=30% Similarity=0.492 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
..|.+|+|.|.|.+|+.+++++..+|+ +|+++.
T Consensus 226 l~g~~vaIQGfGnVG~~aA~~L~e~Ga-kvVavS 258 (445)
T PRK14030 226 IKGKTVAISGFGNVAWGAATKATELGA-KVVTIS 258 (445)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 568999999999999999999999999 888854
No 233
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.65 E-value=1.7 Score=38.92 Aligned_cols=36 Identities=31% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+...|.++++.+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 457899999999999999999999999999999764
No 234
>PRK07201 short chain dehydrogenase; Provisional
Probab=85.63 E-value=1.4 Score=42.52 Aligned_cols=39 Identities=33% Similarity=0.386 Sum_probs=33.7
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.+++++|.|+ |++|..++..+...|+ +|+++++++++++
T Consensus 370 ~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~ 409 (657)
T PRK07201 370 VGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALD 409 (657)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 3678999998 8999999988888999 9999999887643
No 235
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=85.56 E-value=2.9 Score=38.10 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.-.|++|.|+|.|.+|..+++.++.+|. +|++.++.
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp~ 148 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDPP 148 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCc
Confidence 3578999999999999999999999999 99999854
No 236
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=85.47 E-value=3.7 Score=36.77 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=35.3
Q ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 197 ~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.+...+++|||+|+|-+|.+++..+...|+.+++++.|+..
T Consensus 169 ~~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 169 RQKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred hCCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 34467899999999999999999999999878888888753
No 237
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.45 E-value=0.87 Score=42.00 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=34.3
Q ss_pred HhcCCCCCCEEE----EECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 195 RTANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 195 ~~~~~~~g~~Vl----I~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
...+.++|+++| |+|+ |++|.+++|+++..|+ +|+++.+.+.
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~ 73 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGL 73 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCcccc
Confidence 345677888877 7766 9999999999999999 8988776554
No 238
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=85.43 E-value=1.3 Score=45.06 Aligned_cols=36 Identities=19% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..|++|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~ 339 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH 339 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC
Confidence 358999999999999999999999999 899998654
No 239
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=85.40 E-value=1.2 Score=33.16 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=30.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhh
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~ 239 (243)
++|||.|.|.++.-+++-++.+|+ +++++.+++++.
T Consensus 3 kkvLIanrGeia~r~~ra~r~~Gi-~tv~v~s~~d~~ 38 (110)
T PF00289_consen 3 KKVLIANRGEIAVRIIRALRELGI-ETVAVNSNPDTV 38 (110)
T ss_dssp SEEEESS-HHHHHHHHHHHHHTTS-EEEEEEEGGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC-cceeccCchhcc
Confidence 689999999999999999999999 888887777654
No 240
>PLN03139 formate dehydrogenase; Provisional
Probab=85.32 E-value=1.6 Score=39.90 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|++|.|+|.|.+|..+++.++.+|. +|++.+++.
T Consensus 197 L~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~ 232 (386)
T PLN03139 197 LEGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLK 232 (386)
T ss_pred CCCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 368899999999999999999999999 899998764
No 241
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=85.26 E-value=1.5 Score=37.55 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=28.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
--|+|+|+|+.|++++..+...|. +|++++++.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~ 58 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL 58 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 358899999999998888888999 899998664
No 242
>PRK08223 hypothetical protein; Validated
Probab=85.07 E-value=1.7 Score=37.98 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=32.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+..+|.+++..+|...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 457899999999999999999999999999988654
No 243
>PRK13984 putative oxidoreductase; Provisional
Probab=84.94 E-value=1.8 Score=41.63 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=32.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+.+++|+|+|+|+.|+.++..++..|. +|+++++.+
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~ 316 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLS 316 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 4678899999999999999999999999 888887654
No 244
>PRK05855 short chain dehydrogenase; Validated
Probab=84.93 E-value=1.7 Score=40.95 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=33.3
Q ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 201 ~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.+.++||.|+ |++|..+++-+...|+ +|++++++.++++
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~ 353 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAE 353 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence 4578999998 9999999988888999 8999999876654
No 245
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=84.85 E-value=3.5 Score=37.94 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=39.5
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
....+--.++++||+|+|-+|.+++......|..+|++..|+-+|..
T Consensus 170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~ 216 (414)
T COG0373 170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAE 216 (414)
T ss_pred HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 34444458899999999999999999999999889999999887754
No 246
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.82 E-value=1.8 Score=40.17 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 457899999999999999999999999 899888653
No 247
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=84.79 E-value=1.6 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=28.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|+|+|+|+.|++++..+...|. +|+++.++.
T Consensus 23 DVvIVGgGpAGL~aA~~la~~G~-~V~vlEk~~ 54 (254)
T TIGR00292 23 DVIIVGAGPSGLTAAYYLAKNGL-KVCVLERSL 54 (254)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence 48999999999999998888999 899998764
No 248
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=84.59 E-value=1.9 Score=40.44 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~~ 176 (485)
T TIGR01317 141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERED 176 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 456899999999999999999999999 888887554
No 249
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=84.53 E-value=1.9 Score=38.77 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|||.|+ |.+|..++..+...|. +|+++++..
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r~~ 55 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGH-YIIASDWKK 55 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEecc
Confidence 36689999998 9999999999999998 899998753
No 250
>PLN02306 hydroxypyruvate reductase
Probab=84.41 E-value=2 Score=39.15 Aligned_cols=35 Identities=31% Similarity=0.297 Sum_probs=31.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~ 236 (243)
.|++|.|+|.|.+|..+++.++ .+|. +|++.++..
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~~~ 199 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ 199 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 5789999999999999999985 8999 999998764
No 251
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=84.33 E-value=1.8 Score=41.95 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|||+|+|++|..+++.+..+|.++++.+|...
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~ 372 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGK 372 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 467899999999999999999999999999998653
No 252
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=84.32 E-value=1.9 Score=39.92 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccCC
Confidence 457899999999999999998888998 899988664
No 253
>PLN02477 glutamate dehydrogenase
Probab=84.29 E-value=4 Score=37.55 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=29.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
..|.+|+|.|.|.+|..+++++...|+ +|+++.
T Consensus 204 l~g~~VaIqGfGnVG~~~A~~L~e~Ga-kVVaVs 236 (410)
T PLN02477 204 IAGQTFVIQGFGNVGSWAAQLIHEKGG-KIVAVS 236 (410)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE
Confidence 468999999999999999999999999 888554
No 254
>PRK09414 glutamate dehydrogenase; Provisional
Probab=84.25 E-value=4.2 Score=37.82 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=30.7
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
...|.+|+|.|-|.+|+.+++++..+|+ +|+++.
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~Ga-kVVavs 262 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGA-KVVTCS 262 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence 3578999999999999999999999999 888883
No 255
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=84.17 E-value=1.8 Score=44.34 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..++..|. +|++++..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence 457899999999999999999999999 899888654
No 256
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=84.04 E-value=2.3 Score=36.88 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.+.+|+|+|.|++|..++..+...|..+++.+|...
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 3567899999999999999999999998999998654
No 257
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=84.03 E-value=6.3 Score=30.62 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=39.3
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++|.....+..+ +..+ --.|++|+|+|. ..+|.-++.++...|+ +|+.+.+..
T Consensus 7 ~~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~t 62 (140)
T cd05212 7 FVSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWKT 62 (140)
T ss_pred ccccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCCC
Confidence 4554544444433 3333 457999999998 7999999999999999 888888544
No 258
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=83.78 E-value=1.2 Score=39.35 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
..+|.|+|.|-+|.-++.+|.-+|+ +|..++.+.+|+..+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~l 207 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQL 207 (371)
T ss_pred CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhh
Confidence 3567888999999999999999999 999999999988654
No 259
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=83.78 E-value=1.4 Score=38.70 Aligned_cols=41 Identities=32% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCCCEEEEECC-CHHHHH-HHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 200 EVGSTVVIFGL-GSIGLA-VAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~-~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.|+..+|.|+ .++|.+ +-++|+ .|+ +|+.+.|+.+|++..
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v 89 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAV 89 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHH
Confidence 45788899999 699977 556666 999 899999999998754
No 260
>PRK14967 putative methyltransferase; Provisional
Probab=83.73 E-value=3.5 Score=34.26 Aligned_cols=45 Identities=22% Similarity=0.289 Sum_probs=34.9
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
....++++++||-.|.|. |..++.+++. ++.++++++.++..++.
T Consensus 30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRS 74 (223)
T ss_pred HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHH
Confidence 345578889999999876 8888887775 55589999999876653
No 261
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=83.69 E-value=2 Score=43.72 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..|++|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh-~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGH-NVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCC-eEEEEccc
Confidence 468999999999999999999999999 89999864
No 262
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=83.69 E-value=1.6 Score=41.43 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
-.|+|+|+|+.|++++..+...|. +|+++++.+.
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viE~~~~ 57 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQGV-PVVLLDDDDT 57 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEeCCCC
Confidence 469999999999999888888999 8999987753
No 263
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.62 E-value=2.2 Score=40.59 Aligned_cols=43 Identities=26% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
.-.|++|||.|+ |++|...+.=....+..+++.+++++.++..
T Consensus 247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~ 290 (588)
T COG1086 247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYL 290 (588)
T ss_pred HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence 357899999998 8999876655555688899999999887643
No 264
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=83.57 E-value=2.2 Score=38.65 Aligned_cols=36 Identities=19% Similarity=0.319 Sum_probs=32.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+...|..+++.+|...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ 75 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT 75 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 457899999999999999999999999999998764
No 265
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=83.42 E-value=2 Score=44.00 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|+.|+.++..++.+|. +|++++..+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence 46789999999999999999999999 899988653
No 266
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.34 E-value=2.4 Score=38.22 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=32.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 457899999999999999999999999999998764
No 267
>PLN02572 UDP-sulfoquinovose synthase
Probab=83.19 E-value=2.2 Score=39.61 Aligned_cols=35 Identities=26% Similarity=0.200 Sum_probs=30.1
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
..++++|||.|+ |.+|..+++.+...|. +|+++++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 345688999998 9999999999999999 8998864
No 268
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=83.15 E-value=3.2 Score=35.39 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
-.|.+++|.|.|.+|..+++++..+|+ +++++.
T Consensus 30 l~g~~v~IqGfG~VG~~~a~~l~~~Ga-~vv~vs 62 (244)
T PF00208_consen 30 LEGKRVAIQGFGNVGSHAARFLAELGA-KVVAVS 62 (244)
T ss_dssp STTCEEEEEESSHHHHHHHHHHHHTTE-EEEEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEe
Confidence 478999999999999999999999999 888873
No 269
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.65 E-value=2.6 Score=36.90 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=31.7
Q ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 199 ~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.-.|+.|||.|+ +++|.+.++=...+|+ ++++.|.+.+
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~ 73 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ 73 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc
Confidence 347899999998 6999987777778899 8888888764
No 270
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=82.65 E-value=2.1 Score=41.93 Aligned_cols=37 Identities=24% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.++..+|+|+|+|..|++++..++..|+ +|.++.+.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKKKGF-DVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEeccc
Confidence 3566789999999999999999999999 899999865
No 271
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=82.60 E-value=4.1 Score=35.57 Aligned_cols=51 Identities=20% Similarity=0.292 Sum_probs=40.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+..+....++++|++||=+|.|- |.+++-+|+..|+ +|++++-+++..+.+
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~ 111 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYA 111 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHH
Confidence 44567889999999999998643 5566778888899 999999999877654
No 272
>PLN02206 UDP-glucuronate decarboxylase
Probab=82.40 E-value=2.7 Score=39.06 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.++.+|||.|+ |.+|..++..+...|. +|+++++.
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~~ 152 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDNF 152 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeCC
Confidence 35689999998 9999999999999999 89988753
No 273
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.34 E-value=2.4 Score=38.43 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=32.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
...+|+|+|+|++|..++..+...|.++++.++..
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56789999999999999999999999999999976
No 274
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=82.29 E-value=2 Score=39.91 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=29.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
-.|+|+|+|+.|++++..+...|. +|.++++...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~-~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGI-ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence 358999999999999988888999 8999987653
No 275
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=82.12 E-value=2.8 Score=37.25 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~ 236 (243)
.|+++.|+|-|.+|..+++.++ .+|. +|+..++..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~~~~ 179 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNARRH 179 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 6799999999999999999998 8999 899888653
No 276
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.09 E-value=2.6 Score=41.77 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..+++|+|+|+|+.|+.++..+...|. +|++++..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~ 463 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL 463 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence 357899999999999999999999999 89998864
No 277
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=82.06 E-value=6.7 Score=33.01 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..+.+|+|.|.|.+|..++.++...|+ +|+.+..+
T Consensus 29 l~~~~v~I~G~G~VG~~~a~~L~~~g~-~vv~v~D~ 63 (227)
T cd01076 29 LAGARVAIQGFGNVGSHAARFLHEAGA-KVVAVSDS 63 (227)
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 468999999999999999999999999 88855443
No 278
>PTZ00188 adrenodoxin reductase; Provisional
Probab=81.91 E-value=3.3 Score=39.11 Aligned_cols=37 Identities=14% Similarity=0.072 Sum_probs=30.0
Q ss_pred CCCCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAE-GARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~-la~~~g~~~vi~~~~~~~ 237 (243)
..+.+|+|+|+|+.|+.++. +++..|. +|.++.+.+.
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~ 74 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPN 74 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCC
Confidence 35679999999999999877 6667788 8888887653
No 279
>PRK08605 D-lactate dehydrogenase; Validated
Probab=81.90 E-value=2.9 Score=37.26 Aligned_cols=36 Identities=31% Similarity=0.454 Sum_probs=31.1
Q ss_pred CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCch
Q 026140 201 VGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISE 237 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la-~~~g~~~vi~~~~~~~ 237 (243)
.|.+|.|+|.|.+|..+++.+ +.+|. +|++.+++..
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~~~~ 181 (332)
T PRK08605 145 KDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDPFPN 181 (332)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECCCcc
Confidence 578999999999999988887 67899 8999987654
No 280
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=81.72 E-value=5.5 Score=36.63 Aligned_cols=51 Identities=25% Similarity=0.250 Sum_probs=39.1
Q ss_pred hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI 235 (243)
Q Consensus 185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~ 235 (243)
.++.-++++......-...+|++.|+|.-|.+.+.+.+.+|.. +++++|+.
T Consensus 182 ~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~ 234 (432)
T COG0281 182 TLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRK 234 (432)
T ss_pred HHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecC
Confidence 3344455554445555667899999999999999999999987 89999875
No 281
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=81.66 E-value=1.9 Score=42.00 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=28.7
Q ss_pred CEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCchh
Q 026140 203 STVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEK 238 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~-~g~~~vi~~~~~~~~ 238 (243)
-.|+|+|+|+.|++++..+.. .|. +|.++++.+..
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~~Gi-~v~IiE~~~~~ 68 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAFPDI-TTRIVERKPGR 68 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcCCCC-cEEEEEcCCCC
Confidence 369999999999987777777 499 89999977653
No 282
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.64 E-value=2.9 Score=34.39 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|.-++..+..+|.+++..+|...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 457899999999999999999999999999988653
No 283
>PRK07340 ornithine cyclodeaminase; Validated
Probab=81.58 E-value=8 Score=33.99 Aligned_cols=42 Identities=12% Similarity=0.001 Sum_probs=35.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
-....+++|+|+|..|...+..+. ..+.++|.+.+++.+|.+
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~ 164 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAA 164 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH
Confidence 356789999999999999888886 478888999999987754
No 284
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=81.37 E-value=3.1 Score=37.05 Aligned_cols=36 Identities=36% Similarity=0.450 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|+++.|+|.|.+|.++++.++.+|. +|+..+++.
T Consensus 144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~ 179 (324)
T COG1052 144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSP 179 (324)
T ss_pred CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCC
Confidence 458999999999999999999999999 999999886
No 285
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.30 E-value=3.4 Score=36.80 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=37.4
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhc
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEI 241 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~ 241 (243)
+.....++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.
T Consensus 72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~ 120 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEI 120 (322)
T ss_pred HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHH
Confidence 3456678899999999987 58888899988763 369999998865543
No 286
>PRK06141 ornithine cyclodeaminase; Validated
Probab=81.09 E-value=5.9 Score=34.97 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
-...++++|+|+|..|...+.... ..+..+|.+..++.++.+
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~ 164 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAE 164 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 356789999999999999876444 478779999999987754
No 287
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=81.03 E-value=3.3 Score=38.33 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
++..+|||.|+ |.+|..++..+...|. +|+++++.
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45578999998 9999999999999999 89999864
No 288
>PRK06153 hypothetical protein; Provisional
Probab=80.94 E-value=2.4 Score=38.62 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.+.+|+|+|.|++|..++..+...|.++++.+|...
T Consensus 174 L~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~ 210 (393)
T PRK06153 174 LEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDD 210 (393)
T ss_pred HhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCE
Confidence 3567899999999999999999999999999998653
No 289
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=80.94 E-value=3.3 Score=34.05 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=31.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|..++......|.++++.+|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence 347899999999999999999999999999998653
No 290
>PLN02852 ferredoxin-NADP+ reductase
Probab=80.85 E-value=3 Score=39.31 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~--~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|+.|+.++..+.. .|. +|.++++.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCC
Confidence 346789999999999998887765 788 899998765
No 291
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=80.71 E-value=2.6 Score=35.95 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=31.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|.+++..+-..|++++..+|-.+
T Consensus 29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~ 64 (263)
T COG1179 29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDD 64 (263)
T ss_pred hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEeccc
Confidence 457899999999999999999999999999888543
No 292
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=80.52 E-value=3.1 Score=40.63 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCCCEEEEECC-CHHHHHHHHHHHHc-CCCeEEEEcCCchh
Q 026140 200 EVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK 238 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~~v~la~~~-g~~~vi~~~~~~~~ 238 (243)
+++.+|||.|+ |.+|..+++.+... |. +|+++++.+..
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~-~V~~l~r~~~~ 352 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNY-EVYGLDIGSDA 352 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCc-EEEEEeCCchh
Confidence 66789999998 99999999888775 67 89999986643
No 293
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=80.46 E-value=2 Score=41.07 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=34.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++|.|.|.+|+..++..+..|. ++++++.++++.+.+
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~ 456 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDEL 456 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence 678999999999999999999999 899999999887643
No 294
>PRK08618 ornithine cyclodeaminase; Validated
Probab=80.23 E-value=8.3 Score=34.18 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=33.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la-~~~g~~~vi~~~~~~~~~~ 240 (243)
.+..++++|+|+|..|...+... ...++++|.+.+++.+|.+
T Consensus 124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~ 166 (325)
T PRK08618 124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAY 166 (325)
T ss_pred CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHH
Confidence 34678999999999998777554 4678889999999987754
No 295
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=80.16 E-value=3.3 Score=37.85 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..++..+..+|.++++.+|...
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ 76 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV 76 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 456899999999999999999999999999988654
No 296
>PRK07411 hypothetical protein; Validated
Probab=80.10 E-value=3.3 Score=37.80 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=31.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|..+++.+..+|.++++.+|...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 346899999999999999999999999999998654
No 297
>PRK12831 putative oxidoreductase; Provisional
Probab=80.02 E-value=3.5 Score=38.47 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=32.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...|++|+|+|+|.+|+-++..+..+|+ +|.++.+.+
T Consensus 278 ~~~gk~VvVIGgG~va~d~A~~l~r~Ga-~Vtlv~r~~ 314 (464)
T PRK12831 278 IKVGKKVAVVGGGNVAMDAARTALRLGA-EVHIVYRRS 314 (464)
T ss_pred ccCCCeEEEECCcHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 4678999999999999999999999999 688887643
No 298
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=79.80 E-value=5 Score=34.48 Aligned_cols=47 Identities=30% Similarity=0.301 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 026140 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC----GA------TRIIGVDVI 235 (243)
Q Consensus 189 a~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~----g~------~~vi~~~~~ 235 (243)
-+.++......-...+++++|+|..|...+.+.... |. ++++.+|+.
T Consensus 12 ll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~ 68 (255)
T PF03949_consen 12 LLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSK 68 (255)
T ss_dssp HHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETT
T ss_pred HHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEecc
Confidence 344454555556778999999998888888877766 88 679998875
No 299
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=79.70 E-value=5.4 Score=33.23 Aligned_cols=55 Identities=25% Similarity=0.347 Sum_probs=40.3
Q ss_pred hhcccchhhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 178 RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 178 ~aa~~~~~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..-.+.-+...|. +.....+++|++||=+|.| .|..++-+++..+ +|+.+.+.++
T Consensus 51 ~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~ 105 (209)
T COG2518 51 CGQTISAPHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEE 105 (209)
T ss_pred CCceecCcHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHH
Confidence 3334444555554 4578889999999999864 4788888888776 7888887764
No 300
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.69 E-value=10 Score=33.15 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.3
Q ss_pred ccchhhHhHHHHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..++ -.|++|+|+|.| .+|.-++.++...|+ +|.++.+...
T Consensus 136 ~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~t~ 192 (285)
T PRK14191 136 FVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHILTK 192 (285)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCCcH
Confidence 45655555554 4444444 479999999986 999999999999999 7877765443
No 301
>PLN02463 lycopene beta cyclase
Probab=79.64 E-value=3.1 Score=38.70 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=27.4
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|+|+|+|+.|++++..+...|. +|.+++.++
T Consensus 30 DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 30 DLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 58999999999998877777899 899998764
No 302
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=79.62 E-value=4 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
...++|+|+|+|.+|...++.|+.+|+ +|++++.+++
T Consensus 20 ~~~k~IgIIGgGqlg~mla~aA~~lG~-~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGGQLGRMLCQAASQMGI-KVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence 677899999999999999999999999 8999987653
No 303
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=79.57 E-value=3.8 Score=38.02 Aligned_cols=37 Identities=27% Similarity=0.295 Sum_probs=31.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...|++|+|+|+|.+|+-++..+..+|+ +|.++.+.+
T Consensus 269 ~~~gk~VvVIGgG~~a~d~A~~l~~~G~-~Vtlv~~~~ 305 (449)
T TIGR01316 269 VYAGKSVVVIGGGNTAVDSARTALRLGA-EVHCLYRRT 305 (449)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEeecC
Confidence 3468999999999999999999999999 688887653
No 304
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=79.54 E-value=3.3 Score=33.25 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=26.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
-++++|+|+|+|..+.-++..+...|. +|..+.|++-+
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~-~V~~~~R~~~~ 202 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGK-SVTLVTRSPIW 202 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCS-EEEEEESS---
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCC-EEEEEecCCCC
Confidence 567999999998888777766666775 99999988654
No 305
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=79.39 E-value=2.3 Score=37.33 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=26.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
.++|++||=+|.| .|.+++.. ..+|+.+|+++|.++.-.+
T Consensus 159 ~~~g~~vLDvG~G-SGILaiaA-~klGA~~v~a~DiDp~Av~ 198 (295)
T PF06325_consen 159 VKPGKRVLDVGCG-SGILAIAA-AKLGAKKVVAIDIDPLAVE 198 (295)
T ss_dssp SSTTSEEEEES-T-TSHHHHHH-HHTTBSEEEEEESSCHHHH
T ss_pred ccCCCEEEEeCCc-HHHHHHHH-HHcCCCeEEEecCCHHHHH
Confidence 5788999888752 23333333 3469989999998875443
No 306
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=79.14 E-value=8 Score=33.69 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHc----CC------CeEEEEcCC
Q 026140 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLC----GA------TRIIGVDVI 235 (243)
Q Consensus 191 ~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~----g~------~~vi~~~~~ 235 (243)
.++.....--...+|++.|+|..|...+.+.... |. ++++.+|+.
T Consensus 14 nAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~ 68 (279)
T cd05312 14 AALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSK 68 (279)
T ss_pred HHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCC
Confidence 3343333344567899999998888777766654 87 688888865
No 307
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=79.08 E-value=3.5 Score=42.42 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 46799999999999999999999999 899888653
No 308
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=78.85 E-value=4.3 Score=38.62 Aligned_cols=34 Identities=41% Similarity=0.623 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.|++|.|+|.|.+|..+++.++.+|+ +|++.++.
T Consensus 139 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 172 (526)
T PRK13581 139 YGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDPY 172 (526)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 58899999999999999999999999 99999974
No 309
>PLN02256 arogenate dehydrogenase
Probab=78.80 E-value=5.8 Score=34.94 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=36.2
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+.+..+-..+.+|.|+|.|.+|...+..++..|. +|+++++++.
T Consensus 27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~ 70 (304)
T PLN02256 27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY 70 (304)
T ss_pred HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH
Confidence 4566666677899999999999998888888887 8999887753
No 310
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=78.79 E-value=3.6 Score=37.84 Aligned_cols=40 Identities=25% Similarity=0.228 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
....+++|+|.|.+|..+++.+...|. .|++++.++++.+
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~ 268 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAE 268 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHH
Confidence 346789999999999999999989999 8999999887654
No 311
>PRK08317 hypothetical protein; Provisional
Probab=78.79 E-value=3.9 Score=33.58 Aligned_cols=48 Identities=27% Similarity=0.439 Sum_probs=37.2
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhhc
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEI 241 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~~ 241 (243)
+.....+.++++||-+|.|. |..+..+++..+ ..++++++.+++.++.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~ 59 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLAL 59 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence 45667888999999999865 778888888763 3389999998876543
No 312
>PLN02735 carbamoyl-phosphate synthase
Probab=78.77 E-value=2.4 Score=44.01 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=36.9
Q ss_pred hhHhHHHHHHHhcCCCCCCEEEEECCCHH-----------HHHHHHHHHHcCCCeEEEEcCCch
Q 026140 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~v-----------G~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
....+|++......-..=++|||+|+|++ |..++..++.+|+ +||.++++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~ 68 (1102)
T PLN02735 6 TVTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPA 68 (1102)
T ss_pred cceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcc
Confidence 44556775433333333469999999874 5558888889999 8999998774
No 313
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=78.59 E-value=5.5 Score=33.56 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=29.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.++.+|||+|+|.++.-=+..+...|+ +|.++...
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCC
Confidence 357899999999999888888888999 78887654
No 314
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=78.06 E-value=2.9 Score=41.28 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=34.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.|+|+|.+|...++++...|. .|+..+.+++.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~ 351 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDL 351 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 579999999999999999989999 99999999887654
No 315
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=77.95 E-value=6.3 Score=33.85 Aligned_cols=45 Identities=24% Similarity=0.150 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC----------eEEEEcCC
Q 026140 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT----------RIIGVDVI 235 (243)
Q Consensus 191 ~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~----------~vi~~~~~ 235 (243)
.++.....--...++++.|+|..|...+.+....+.+ +++.+|+.
T Consensus 14 nAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~ 68 (254)
T cd00762 14 AALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRK 68 (254)
T ss_pred HHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCC
Confidence 3343344445568999999999998888887766554 78888764
No 316
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=77.82 E-value=10 Score=30.22 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=36.4
Q ss_pred cccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 180 CLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 180 a~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
..++|.....+. +++..+ --.|++++|+|. ..+|.-+..++...|+ +|....+....
T Consensus 14 ~~~PcTp~aii~-lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~a-tVt~~h~~T~~ 72 (160)
T PF02882_consen 14 GFVPCTPLAIIE-LLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGA-TVTICHSKTKN 72 (160)
T ss_dssp SS--HHHHHHHH-HHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT--EEEEE-TTSSS
T ss_pred CCcCCCHHHHHH-HHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCC-eEEeccCCCCc
Confidence 445554444444 334444 468999999998 5899999999999999 88887766533
No 317
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=77.65 E-value=4.4 Score=36.76 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+..+++|+|+|+|.+|+-++..++.+|. +|.++.+.+
T Consensus 141 ~~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtlv~~~~ 177 (396)
T PRK09754 141 LQPERSVVIVGAGTIGLELAASATQRRC-KVTVIELAA 177 (396)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 3568899999999999999988889999 788887644
No 318
>PRK08291 ectoine utilization protein EutC; Validated
Probab=77.49 E-value=12 Score=33.22 Aligned_cols=41 Identities=17% Similarity=0.056 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
+..++++|+|+|..|.+++.... ..++++|.+.+++.++.+
T Consensus 130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~ 171 (330)
T PRK08291 130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAE 171 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHH
Confidence 45578999999999998777666 467879999999987755
No 319
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=77.00 E-value=3.7 Score=38.71 Aligned_cols=32 Identities=25% Similarity=0.430 Sum_probs=28.0
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-|+|+|+|..|++++.-|...|+ +|+++...+
T Consensus 63 DVvVVG~G~AGl~AAi~Aa~~Ga-~VivlEK~~ 94 (506)
T PRK06481 63 DIVIVGAGGAGMSAAIEAKDAGM-NPVILEKMP 94 (506)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence 48999999999999888888999 899988654
No 320
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.66 E-value=2.9 Score=40.59 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=35.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.++|+|.|.|.+|+.+++..+..|. ++++++.++++.+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~ 439 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETL 439 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHH
Confidence 3579999999999999999999999 899999999887654
No 321
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=75.96 E-value=5.8 Score=37.70 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=31.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-.|++|.|+|-|.+|..+++.++.+|. +|++.++.
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~ 170 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY 170 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence 357899999999999999999999999 99999874
No 322
>PRK07121 hypothetical protein; Validated
Probab=75.73 E-value=4.6 Score=37.81 Aligned_cols=32 Identities=31% Similarity=0.528 Sum_probs=27.3
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-|+|+|+|..|+.++.-|...|+ +|+++...+
T Consensus 22 DVvVVGaG~AGl~AA~~aae~G~-~VillEK~~ 53 (492)
T PRK07121 22 DVVVVGFGAAGACAAIEAAAAGA-RVLVLERAA 53 (492)
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 48899999999988888888899 899988654
No 323
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=75.68 E-value=5.3 Score=37.29 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+-.++++|+|+|.+|+-.+++...+|. +|.++.+.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~-~VTiie~~~~ 207 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS-KVTVVERGDR 207 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCC
Confidence 667899999999999999999999999 8999987764
No 324
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=75.64 E-value=14 Score=32.78 Aligned_cols=41 Identities=27% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
...++++|+|+|..+...+..+. ..++++|.+..++.+|.+
T Consensus 127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~ 168 (326)
T TIGR02992 127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAE 168 (326)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHH
Confidence 45678999999999988877776 588888999999988754
No 325
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=75.39 E-value=3.9 Score=40.44 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=33.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.|+|+|.+|...++++...|. .|+..+.+++.++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~ 351 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDL 351 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence 479999999999999998888999 99999999887654
No 326
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.38 E-value=5.8 Score=36.46 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=35.8
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+.....+|+|.|+ |.+|+..++.++..|+ .|-++.|+..+..
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf-~vra~VRd~~~a~ 117 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGF-SVRALVRDEQKAE 117 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCC-eeeeeccChhhhh
Confidence 3456678999999 9999999999999999 8999998876543
No 327
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=75.26 E-value=4.7 Score=35.73 Aligned_cols=39 Identities=31% Similarity=0.278 Sum_probs=32.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.--.++-|+|+|+|++|..++.++...|++++-.++-..
T Consensus 70 ~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq 108 (430)
T KOG2018|consen 70 EKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ 108 (430)
T ss_pred HHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence 334677899999999999999999999999988887543
No 328
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=75.18 E-value=7.3 Score=34.53 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=37.7
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++...|+|.|. .++|++.+.-++..|+ +|.++.++..|+..+
T Consensus 29 ~~k~~~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a 73 (331)
T KOG1210|consen 29 KPKPRRHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEA 73 (331)
T ss_pred ccCccceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHH
Confidence 3455578899987 7999999999999999 999999999988755
No 329
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=74.83 E-value=4.1 Score=40.45 Aligned_cols=38 Identities=18% Similarity=0.303 Sum_probs=33.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.|+|+|.+|...++++...|+ .|+..+.+++.++.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~ 373 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDR 373 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHH
Confidence 579999999999999888888899 99999999887654
No 330
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=73.81 E-value=8.1 Score=26.84 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=20.8
Q ss_pred cCCCCCCEEEEECC-CHHHHHHHHHHH-HcCCCeEEEEcC
Q 026140 197 ANVEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDV 234 (243)
Q Consensus 197 ~~~~~g~~VlI~Ga-G~vG~~~v~la~-~~g~~~vi~~~~ 234 (243)
....-.++|||+|+ ++.|++.-..+. ..|+ +++.+.-
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~f 72 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVSF 72 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE-
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEee
Confidence 33433489999998 799988544433 5677 7777653
No 331
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=73.79 E-value=9.9 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.271 Sum_probs=27.9
Q ss_pred HHHhcCCCCCCEEEEECC---CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 193 AWRTANVEVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~Ga---G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
+....+.++||.++++.. .+.=..+++.||.+|+ +||++.
T Consensus 95 ~~~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~-~vIalT 137 (138)
T PF13580_consen 95 LLALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGM-KVIALT 137 (138)
T ss_dssp HHHHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT--EEEEEE
T ss_pred HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC-EEEEEe
Confidence 344566899999988843 4777889999999999 888875
No 332
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=73.61 E-value=4 Score=39.50 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=34.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.|+|.|.|.+|+.+++..+..|. ++++++.++++.+.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~ 439 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLM 439 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHH
Confidence 578999999999999999999999 899999999887643
No 333
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.03 E-value=14 Score=32.23 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=40.5
Q ss_pred ccchhhHhHHHHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
+.+|+....+. +++..++ -.|++++|+|-| -+|.-+.++++..|+ +|++..+....
T Consensus 138 ~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~T~~ 195 (285)
T PRK10792 138 LRPCTPRGIMT-LLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRFTKN 195 (285)
T ss_pred CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECCCCC
Confidence 45655554554 3444443 479999999985 699999999999999 88887765543
No 334
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=72.79 E-value=8.5 Score=28.18 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=18.7
Q ss_pred eEEEEEeCCCCC----ccCCCCEEEee
Q 026140 79 IGVVESVGENVD----GVVEGDVVIPH 101 (243)
Q Consensus 79 ~G~Vv~vG~~v~----~~~~Gd~Vv~~ 101 (243)
-|+|+++|++.. .+++||+|+..
T Consensus 46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~ 72 (100)
T PTZ00414 46 EGTVVAVAAATKDWTPTVKVGDTVLLP 72 (100)
T ss_pred eeEEEEECCCCccccceecCCCEEEEc
Confidence 499999999854 48999999743
No 335
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=72.60 E-value=8 Score=31.63 Aligned_cols=47 Identities=21% Similarity=0.201 Sum_probs=35.7
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
....+++|+.++=+|+| .|...+++++.....+|++++++++++++.
T Consensus 28 s~L~~~~g~~l~DIGaG-tGsi~iE~a~~~p~~~v~AIe~~~~a~~~~ 74 (187)
T COG2242 28 SKLRPRPGDRLWDIGAG-TGSITIEWALAGPSGRVIAIERDEEALELI 74 (187)
T ss_pred HhhCCCCCCEEEEeCCC-ccHHHHHHHHhCCCceEEEEecCHHHHHHH
Confidence 45678999987777874 356667888776666999999999887653
No 336
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.56 E-value=15 Score=32.46 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=40.7
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++|.|+|. +.+|.-++.++...|+ +|++..+...
T Consensus 138 ~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~ 194 (301)
T PRK14194 138 LTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST 194 (301)
T ss_pred CCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC
Confidence 45655454454 344444 457999999998 5999999999999999 8988865543
No 337
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=72.38 E-value=7 Score=33.22 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
...+|+|+|+|++|..++...-.+|.+++..++...-
T Consensus 29 ~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v 65 (254)
T COG0476 29 KDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTV 65 (254)
T ss_pred hhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcc
Confidence 3467999999999999999999999999888876543
No 338
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=72.36 E-value=14 Score=30.30 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCchhhh
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFE 240 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g-~~~vi~~~~~~~~~~ 240 (243)
+......+++++||=+|.|. |..+..+++..+ ..+|++++.+++-.+
T Consensus 64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~ 111 (205)
T PRK13944 64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAI 111 (205)
T ss_pred HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHH
Confidence 34566788999999998643 566666676654 238999999876544
No 339
>PLN02985 squalene monooxygenase
Probab=72.35 E-value=6.5 Score=37.27 Aligned_cols=33 Identities=27% Similarity=0.270 Sum_probs=28.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|+|+|+|..|++++..+...|. +|.++++..
T Consensus 44 ~DViIVGAG~aGlalA~aLa~~G~-~V~vlEr~~ 76 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAKDGR-RVHVIERDL 76 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCC-eEEEEECcC
Confidence 358999999999998877777899 899999764
No 340
>PTZ00367 squalene epoxidase; Provisional
Probab=72.16 E-value=6.3 Score=37.88 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|+|+|+|..|++++..+...|. +|.++.++.
T Consensus 34 ~dViIVGaGiaGlalA~aLar~G~-~V~VlEr~~ 66 (567)
T PTZ00367 34 YDVIIVGGSIAGPVLAKALSKQGR-KVLMLERDL 66 (567)
T ss_pred ccEEEECCCHHHHHHHHHHHhcCC-EEEEEcccc
Confidence 368999999999999888888899 999999875
No 341
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=71.89 E-value=7 Score=38.82 Aligned_cols=38 Identities=29% Similarity=0.371 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...|++|+|+|+|.+|+-++..++.+|+++|+++.+.+
T Consensus 567 ~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 567 IKFGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 35689999999999999999999999995588887653
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=71.47 E-value=9 Score=35.51 Aligned_cols=37 Identities=30% Similarity=0.364 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
...+++|+|+|+|.+|+-++..+..+|+.+|..+.+.
T Consensus 270 ~~~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 270 LPVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 3478999999999999999988888898778888764
No 343
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=71.35 E-value=5.9 Score=37.43 Aligned_cols=31 Identities=32% Similarity=0.192 Sum_probs=27.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
.-.|+|+|+|+.|+.++..+...|. +|++++
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~-~v~li~ 241 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGI-RTGIVA 241 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 4579999999999999999999999 777774
No 344
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=71.31 E-value=4.4 Score=32.45 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=30.8
Q ss_pred ccchhhHhHHHHHHH------hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 181 LLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~------~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|+.....+.+ +.. ......+.+||=+|+| .|+..+.+++..+..+|+++|.++
T Consensus 20 vW~aa~~La~~-l~~~~~~~~~~~~~~~~~VLELGaG-~Gl~gi~~a~~~~~~~Vv~TD~~~ 79 (173)
T PF10294_consen 20 VWPAALVLARY-LLSHSESEFNPELFRGKRVLELGAG-TGLPGIAAAKLFGAARVVLTDYNE 79 (173)
T ss_dssp ---HHHHHHHH-HHH-------GGGTTTSEEEETT-T-TSHHHHHHHHT-T-SEEEEEE-S-
T ss_pred EechHHHHHHH-HHHhcccccchhhcCCceEEEECCc-cchhHHHHHhccCCceEEEeccch
Confidence 34445555554 333 2446788999999986 566666666665666999999776
No 345
>PRK00811 spermidine synthase; Provisional
Probab=71.14 E-value=5.3 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.+.++||++|.|. |..+..+++..+..+|++++.+++-.+++
T Consensus 75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a 116 (283)
T PRK00811 75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVC 116 (283)
T ss_pred CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHH
Confidence 4578999998654 55566677766777899999888765544
No 346
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=71.07 E-value=9 Score=33.51 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|||+|.|++|.-++...-..|.+++..+|...
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 457899999999999999999999998999988654
No 347
>PLN00016 RNA-binding protein; Provisional
Probab=71.05 E-value=5.7 Score=35.74 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=32.4
Q ss_pred CCCCEEEEE----CC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 200 EVGSTVVIF----GL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 200 ~~g~~VlI~----Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
....+|||. |+ |.+|..++..+...|. +|++++++..+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~ 92 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEP 92 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcc
Confidence 444789999 98 9999999999888998 89999987653
No 348
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=71.00 E-value=12 Score=31.01 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=35.0
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG 242 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~ 242 (243)
+.....+++|++||-+|.| .|..+..+++..+. .+|++++.+++-.+.+
T Consensus 68 ~~~~l~~~~g~~VLdIG~G-sG~~t~~la~~~~~~~~V~~vE~~~~~~~~a 117 (212)
T PRK13942 68 MCELLDLKEGMKVLEIGTG-SGYHAAVVAEIVGKSGKVVTIERIPELAEKA 117 (212)
T ss_pred HHHHcCCCCcCEEEEECCc-ccHHHHHHHHhcCCCCEEEEEeCCHHHHHHH
Confidence 4466778999999999864 35566667766553 3899999987665543
No 349
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=70.87 E-value=10 Score=30.52 Aligned_cols=42 Identities=24% Similarity=0.312 Sum_probs=29.5
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
...+.+|++||.+|+|+-+.......+..+..+|++++.++.
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM 68 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc
Confidence 445689999999998766654444444444448999998874
No 350
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=70.52 E-value=9.2 Score=34.04 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.|++++|+|+|.+|+-++..+...|+++|.++.+.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 37899999999999998887777898547777654
No 351
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=70.43 E-value=6.7 Score=32.00 Aligned_cols=43 Identities=16% Similarity=0.087 Sum_probs=30.3
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
......++.+||-+|.|. |..+..+++. |. +|++++.+++-++
T Consensus 24 ~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~ 66 (197)
T PRK11207 24 EAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIA 66 (197)
T ss_pred HhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHH
Confidence 444556778999998643 5566666654 77 8999999876444
No 352
>PRK07846 mycothione reductase; Reviewed
Probab=70.35 E-value=8.6 Score=35.66 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=30.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-+++.++.+|. +|+.+.+.+
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~~~ 199 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSALGV-RVTVVNRSG 199 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 35799999999999999999999999 888888765
No 353
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=70.00 E-value=9.2 Score=35.12 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-++..++..|. +|.++.+.+
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 190 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS-KVTVLDAAS 190 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 46799999999999999988888999 788887654
No 354
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=69.34 E-value=6.4 Score=38.88 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=32.2
Q ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhhc
Q 026140 203 STVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.|+|+|.+|...++++. ..|. .|+..+.+++.++.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~ 348 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINH 348 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 67999999999988888776 7899 99999998876554
No 355
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=69.33 E-value=10 Score=35.30 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|.+|+-++..+..+|. +|..+.+.+
T Consensus 172 ~~~~~vvIIGgG~ig~E~A~~l~~~G~-~Vtlie~~~ 207 (466)
T PRK06115 172 EVPKHLVVIGAGVIGLELGSVWRRLGA-QVTVVEYLD 207 (466)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 357899999999999999999899999 888887544
No 356
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=69.22 E-value=6.9 Score=38.61 Aligned_cols=38 Identities=21% Similarity=0.208 Sum_probs=32.0
Q ss_pred CEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhhc
Q 026140 203 STVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~~ 241 (243)
++|.|+|+|.+|...++++. ..|. .|+..+.+++.++.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~~~l~~ 343 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINPQGINN 343 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence 47999999999999888776 5899 99999999876543
No 357
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=68.98 E-value=9.7 Score=37.19 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
....|++|+|+|+|.+|+-++..+..+|+.+|.++.+.+
T Consensus 319 ~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 319 ALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 356799999999999999999888889986687776554
No 358
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.96 E-value=20 Score=31.34 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=39.0
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++|+|+|.| .+|.-+..++...|+ +|+...+...
T Consensus 137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~t~ 193 (285)
T PRK14189 137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSKTR 193 (285)
T ss_pred CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCCCC
Confidence 45555444444 344444 3579999999985 669999999999999 8887765543
No 359
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=68.82 E-value=10 Score=34.74 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCCCEEEEECC-CHHHHH--HHHHHHHcCCCeEEEEcC
Q 026140 200 EVGSTVVIFGL-GSIGLA--VAEGARLCGATRIIGVDV 234 (243)
Q Consensus 200 ~~g~~VlI~Ga-G~vG~~--~v~la~~~g~~~vi~~~~ 234 (243)
.-|+++||.|+ +++|++ .++.+ ..|+ +++++..
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~ 74 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFF 74 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEec
Confidence 34578999998 799999 45555 8899 7888774
No 360
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=68.81 E-value=8.7 Score=39.30 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.|++|+|+|+|.+|+-++..++.+|+ +|+.+.+.+
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga-~Vtlv~rr~ 480 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGG-NVTIVYRRT 480 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEEecC
Confidence 68999999999999999999999999 788776553
No 361
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=68.76 E-value=11 Score=34.47 Aligned_cols=36 Identities=31% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|.+|+-++..++..|. +|..+.+.+
T Consensus 135 ~~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 170 (427)
T TIGR03385 135 NKVENVVIIGGGYIGIEMAEALRERGK-NVTLIHRSE 170 (427)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhCCC-cEEEEECCc
Confidence 456899999999999998888888898 788877654
No 362
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=68.71 E-value=9.2 Score=35.57 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-++..++.+|. +|+.+.+.+
T Consensus 179 ~~~~vvIIGgG~~G~E~A~~l~~~g~-~Vtli~~~~ 213 (472)
T PRK05976 179 LPKSLVIVGGGVIGLEWASMLADFGV-EVTVVEAAD 213 (472)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEecC
Confidence 35899999999999999999999999 888887654
No 363
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=68.54 E-value=9.5 Score=33.95 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=30.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
-+.++|.|+|.+|+.+...++..|. +|+++...+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~-~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK-KVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEcccc
Confidence 5789999999999999999999999 8888876653
No 364
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=68.39 E-value=8.9 Score=31.86 Aligned_cols=52 Identities=23% Similarity=0.281 Sum_probs=33.5
Q ss_pred hhHhHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEcCCchhh
Q 026140 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKF 239 (243)
Q Consensus 185 ~~~ta~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~-~vi~~~~~~~~~ 239 (243)
+...|. +.+...+++|++||-+|+| .|..++.+++..|.. +|+.+++.++-.
T Consensus 58 P~~~a~--~l~~L~l~pg~~VLeIGtG-sGY~aAlla~lvg~~g~Vv~vE~~~~l~ 110 (209)
T PF01135_consen 58 PSMVAR--MLEALDLKPGDRVLEIGTG-SGYQAALLAHLVGPVGRVVSVERDPELA 110 (209)
T ss_dssp HHHHHH--HHHHTTC-TT-EEEEES-T-TSHHHHHHHHHHSTTEEEEEEESBHHHH
T ss_pred HHHHHH--HHHHHhcCCCCEEEEecCC-CcHHHHHHHHhcCccceEEEECccHHHH
Confidence 444443 4577889999999999864 366666777766642 588888776543
No 365
>PRK13748 putative mercuric reductase; Provisional
Probab=68.28 E-value=8.4 Score=36.62 Aligned_cols=31 Identities=29% Similarity=0.309 Sum_probs=27.8
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-|+|+|+|+-|+.++..+...|. +|.++++.
T Consensus 100 DvvVIG~GpaG~~aA~~~~~~G~-~v~lie~~ 130 (561)
T PRK13748 100 HVAVIGSGGAAMAAALKAVEQGA-RVTLIERG 130 (561)
T ss_pred CEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence 48899999999999999999999 89999865
No 366
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=68.26 E-value=11 Score=34.67 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++++|+|+|.+|.-++..++.+|. +|..+.+.+
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~~ 181 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGL-HPTLIHRSD 181 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCC-cEEEEeccc
Confidence 346899999999999999999899999 888888764
No 367
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.15 E-value=24 Score=31.07 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=38.3
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
+++|+....+. +++..+ --.|++|+|+|- +.+|.-++.++...|+ .|++..
T Consensus 137 ~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~ 189 (296)
T PRK14188 137 LVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAH 189 (296)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEEC
Confidence 45655444454 344444 368999999995 8999999999999999 888884
No 368
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=67.93 E-value=10 Score=34.00 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+..+++|+|+|+|.+|+-++..+...|. +|+.+.+.+
T Consensus 138 ~~~~~~vvViGgG~~g~e~A~~L~~~g~-~Vtlv~~~~ 174 (377)
T PRK04965 138 LRDAQRVLVVGGGLIGTELAMDLCRAGK-AVTLVDNAA 174 (377)
T ss_pred hhcCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 3567899999999999988888888898 888887654
No 369
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=67.80 E-value=11 Score=32.50 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=31.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|.-+++..-..|.+++..+|...
T Consensus 25 ~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~ 60 (287)
T PTZ00245 25 MHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGL 60 (287)
T ss_pred hhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCc
Confidence 456899999999999999999999999898888654
No 370
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=67.69 E-value=11 Score=35.11 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=28.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
...+++|+|+|+|.+|+-++..+...|+.+|....
T Consensus 278 ~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~ 312 (471)
T PRK12810 278 SAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRD 312 (471)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcc
Confidence 35689999999999999999888888886677543
No 371
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=67.30 E-value=11 Score=34.91 Aligned_cols=35 Identities=20% Similarity=0.362 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 208 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV-KVTLINTRD 208 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 46899999999999999999999999 888888765
No 372
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=67.24 E-value=10 Score=39.07 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
...|++|+|+|+|.+|+-++..++.+|+..|..+.+.
T Consensus 568 ~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 568 ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 3578999999999999999999999999666665543
No 373
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.21 E-value=8.9 Score=36.24 Aligned_cols=33 Identities=30% Similarity=0.167 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
.....|+|+|+|+.|+.++..+...|. +|++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~-~v~li~ 242 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL-RTAMVA 242 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC-cEEEEe
Confidence 445679999999999999999999999 777764
No 374
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=67.06 E-value=11 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-+++.+..+|. +|+++.+.+
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~~G~-~Vtlv~~~~ 207 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHRLGS-EVDVVEMFD 207 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEecCC
Confidence 46899999999999999999999999 788887654
No 375
>PTZ00058 glutathione reductase; Provisional
Probab=66.92 E-value=11 Score=36.14 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-.++....+|. +|..+.+.+
T Consensus 236 ~pk~VvIIGgG~iGlE~A~~l~~~G~-~Vtli~~~~ 270 (561)
T PTZ00058 236 EAKRIGIAGSGYIAVELINVVNRLGA-ESYIFARGN 270 (561)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCC-cEEEEEecc
Confidence 37899999999999999999999999 788887654
No 376
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=66.70 E-value=8.2 Score=39.65 Aligned_cols=33 Identities=42% Similarity=0.551 Sum_probs=29.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..|+|+|+|+-|+.++..+...|. +|++++..+
T Consensus 164 ~dVvIIGaGPAGLaAA~~aar~G~-~V~liD~~~ 196 (985)
T TIGR01372 164 CDVLVVGAGPAGLAAALAAARAGA-RVILVDEQP 196 (985)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 569999999999999999999999 899988653
No 377
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=66.68 E-value=9.4 Score=37.15 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=28.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
--|+|+|+|.+|..++.-+...|. +|+++++.+
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl-~V~LvE~~d 104 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGL-RVGLVERED 104 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccc
Confidence 358999999999998888888899 899998763
No 378
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=66.65 E-value=18 Score=33.19 Aligned_cols=36 Identities=31% Similarity=0.421 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|.+|.-++..++..|. +|..+.+.+
T Consensus 147 ~~~~~vvVvGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 182 (444)
T PRK09564 147 EEIKNIVIIGAGFIGLEAVEAAKHLGK-NVRIIQLED 182 (444)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCC-cEEEEeCCc
Confidence 357899999999999999999888998 788877554
No 379
>PLN02697 lycopene epsilon cyclase
Probab=66.38 E-value=9.4 Score=36.38 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=25.4
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
-|+|+|+|+.|++++..+...|. +|.+++.
T Consensus 110 DVvIVGaGPAGLalA~~Lak~Gl-~V~LIe~ 139 (529)
T PLN02697 110 DLVVIGCGPAGLALAAESAKLGL-NVGLIGP 139 (529)
T ss_pred cEEEECcCHHHHHHHHHHHhCCC-cEEEecC
Confidence 48999999999988877777799 8888875
No 380
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=66.38 E-value=8.9 Score=36.16 Aligned_cols=37 Identities=27% Similarity=0.344 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
....+.+||+|+|..|+.++.=+..+|+ +|+.+..++
T Consensus 121 ~~v~~svLVIGGGvAGitAAl~La~~G~-~v~LVEKep 157 (622)
T COG1148 121 VEVSKSVLVIGGGVAGITAALELADMGF-KVYLVEKEP 157 (622)
T ss_pred HhhccceEEEcCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 4557899999999999988877788999 999988765
No 381
>PRK14851 hypothetical protein; Provisional
Probab=66.35 E-value=11 Score=37.09 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|..++.....+|.++++.+|...
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ 77 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence 468999999999999999999999999999988554
No 382
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=66.25 E-value=10 Score=35.17 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus 168 ~~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~ 202 (452)
T TIGR03452 168 LPESLVIVGGGYIAAEFAHVFSALGT-RVTIVNRST 202 (452)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEEccC
Confidence 36899999999999999999999999 888888654
No 383
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=66.10 E-value=9.3 Score=37.30 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=27.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..|+|+|+|.+|++++.-+...|. +|+++++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~ 292 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEAD 292 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecC
Confidence 479999999999998887778899 89999875
No 384
>PLN02852 ferredoxin-NADP+ reductase
Probab=66.04 E-value=14 Score=34.95 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--------------------CCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLC--------------------GATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~--------------------g~~~vi~~~~~~ 236 (243)
+..|++|+|+|+|.+|+-++..+... |+++|.++.|..
T Consensus 163 ~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg 220 (491)
T PLN02852 163 LKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRG 220 (491)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCC
Confidence 45789999999999998877776554 887888887765
No 385
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=65.96 E-value=13 Score=26.72 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=18.2
Q ss_pred eEEEEEeCCCCC----ccCCCCEEEee
Q 026140 79 IGVVESVGENVD----GVVEGDVVIPH 101 (243)
Q Consensus 79 ~G~Vv~vG~~v~----~~~~Gd~Vv~~ 101 (243)
.|+|+++|+... .+++||+|+..
T Consensus 37 ~G~VvavG~g~~~~~~~Vk~GD~Vl~~ 63 (91)
T PRK14533 37 KAEVVAVGKLDDEEDFDIKVGDKVIFS 63 (91)
T ss_pred eEEEEEECCCCccccccccCCCEEEEc
Confidence 599999997542 48999999754
No 386
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=65.80 E-value=10 Score=35.51 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.-+++|.|+|+||-|+.+..-+...|. .|++..+.+.
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~-~Vtv~e~~~~ 157 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGH-DVTVFERVAL 157 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCC-eEEEeCCcCC
Confidence 457899999999999999988889999 8988887654
No 387
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=65.62 E-value=13 Score=34.89 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..|++|+|+|+|.+|+-++..+..+|+..|.++...
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~ 316 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEec
Confidence 578999999999999998888888887678777644
No 388
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=65.46 E-value=12 Score=34.75 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-.++.+..+|. +|..+.+.+
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 199 (450)
T TIGR01421 165 LPKRVVIVGAGYIAVELAGVLHGLGS-ETHLVIRHE 199 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 36899999999999999999999999 788887664
No 389
>PRK06370 mercuric reductase; Validated
Probab=65.20 E-value=13 Score=34.55 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=30.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-++..++.+|. +|..+.+.+
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~ 204 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRRFGS-EVTVIERGP 204 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 46899999999999999999999999 888888664
No 390
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=65.19 E-value=13 Score=34.72 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=30.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-+++.++.+|. +|+++.+.+
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 216 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRRLGA-EVTILEALP 216 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCC
Confidence 45899999999999999999899999 888887654
No 391
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=65.11 E-value=14 Score=33.96 Aligned_cols=36 Identities=31% Similarity=0.292 Sum_probs=30.9
Q ss_pred CCCCEEEEECC-----------------CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGL-----------------GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~Ga-----------------G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-.|+++||.|+ |.+|.+.++.+...|+ +|+.++++.
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~ 238 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPV 238 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCc
Confidence 47899999965 5699999999999999 899888654
No 392
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=65.08 E-value=9.6 Score=37.00 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=26.0
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
-|||+|+|..|+.++.-|...|+ +|+++....
T Consensus 31 DVlVIG~G~AGl~AAi~Aa~~G~-~V~lveK~~ 62 (617)
T PTZ00139 31 DAVVVGAGGAGLRAALGLVELGY-KTACISKLF 62 (617)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEeccC
Confidence 38999999999987777777899 888887553
No 393
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=65.06 E-value=13 Score=34.73 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=27.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~ 233 (243)
+...+|+|+|||..|+++++=+...|+..+.++.
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE 52 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILE 52 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEE
Confidence 4455899999999999998888888886766665
No 394
>PLN02602 lactate dehydrogenase
Probab=64.58 E-value=17 Score=32.69 Aligned_cols=37 Identities=27% Similarity=0.463 Sum_probs=30.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhh
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKF 239 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~ 239 (243)
.+|.|+|+|.+|..++..+...+. .+++.+|.++++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~ 75 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKL 75 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchh
Confidence 699999999999998888777664 4699999877553
No 395
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.57 E-value=13 Score=34.54 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=29.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-++..++.+|. +|..+.+.+
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~~G~-~Vtlv~~~~ 205 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKNYGV-DVTIVEFLD 205 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 45799999999999999999999999 788776543
No 396
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=64.45 E-value=13 Score=34.36 Aligned_cols=35 Identities=29% Similarity=0.435 Sum_probs=29.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-++..++.+|. +|+.+.+.+
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 205 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYASLGA-EVTIVEALP 205 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 45799999999999998888889999 788887654
No 397
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=64.24 E-value=30 Score=28.54 Aligned_cols=51 Identities=25% Similarity=0.296 Sum_probs=37.6
Q ss_pred ccchhhHhHHHHHHHhcCC----------CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 181 LLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~----------~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
+++|.....+. +++..++ -.|++++|+|- .-+|.=+..++...|+ +|+.++
T Consensus 32 ~~PCTp~avi~-lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~A-tVti~~ 93 (197)
T cd01079 32 ILPCTPLAIVK-ILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGA-RVYSVD 93 (197)
T ss_pred ccCCCHHHHHH-HHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCC-EEEEEe
Confidence 45555444444 3444443 68999999997 5999999999999999 888884
No 398
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=64.23 E-value=11 Score=34.89 Aligned_cols=31 Identities=23% Similarity=0.169 Sum_probs=23.6
Q ss_pred EEEEECCCHHHHHHH-HHHHHc-CCCeEEEEcCC
Q 026140 204 TVVIFGLGSIGLAVA-EGARLC-GATRIIGVDVI 235 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v-~la~~~-g~~~vi~~~~~ 235 (243)
-|+|+|+|.+|++++ ++++.. |. +|++++..
T Consensus 26 DVvIIGgGi~Gls~A~~La~~~~G~-~V~vlE~~ 58 (460)
T TIGR03329 26 DVCIVGGGFTGLWTAIMIKQQRPAL-DVLVLEAD 58 (460)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCC-eEEEEeCC
Confidence 488889999998877 555543 77 88888864
No 399
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=64.19 E-value=13 Score=34.43 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=29.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.++++|+|+|.+|+-++..++.+|. +|+++.+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS-EVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCC
Confidence 5899999999999999999999999 788887664
No 400
>PRK06046 alanine dehydrogenase; Validated
Probab=64.04 E-value=30 Score=30.66 Aligned_cols=41 Identities=15% Similarity=0.065 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
....++.|+|+|..|...+.... ..+++++.+.+++.++.+
T Consensus 127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~ 168 (326)
T PRK06046 127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAE 168 (326)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHH
Confidence 45678999999999988877665 568888888898887654
No 401
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=63.95 E-value=14 Score=34.20 Aligned_cols=35 Identities=17% Similarity=0.335 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 202 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV-KVTVFERGD 202 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEecCC
Confidence 46899999999999998888888999 788887664
No 402
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=63.81 E-value=26 Score=30.91 Aligned_cols=67 Identities=24% Similarity=0.304 Sum_probs=37.8
Q ss_pred CcEEEcCCCCChhhhcccchhhHhHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAW-RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 165 ~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
+.++.+...+.| .......|.+. +. ...-.++|++||=+|.|+ |.+++. |..+|+.+|+++|..+--
T Consensus 130 ~~~i~lDPGlAF----GTG~HpTT~lc-L~~Le~~~~~g~~vlDvGcGS-GILaIA-a~kLGA~~v~g~DiDp~A 197 (300)
T COG2264 130 ELNIELDPGLAF----GTGTHPTTSLC-LEALEKLLKKGKTVLDVGCGS-GILAIA-AAKLGAKKVVGVDIDPQA 197 (300)
T ss_pred ceEEEEcccccc----CCCCChhHHHH-HHHHHHhhcCCCEEEEecCCh-hHHHHH-HHHcCCceEEEecCCHHH
Confidence 444555444433 23334444443 22 223356899998888632 433333 346788889999987643
No 403
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=63.79 E-value=11 Score=36.87 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=25.2
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
-|||+|+|..|++++.-|...|+ +|+++..
T Consensus 37 DVlVVG~G~AGl~AAi~Aae~G~-~VilieK 66 (640)
T PRK07573 37 DVIVVGTGLAGASAAATLGELGY-NVKVFCY 66 (640)
T ss_pred CEEEECccHHHHHHHHHHHHcCC-cEEEEec
Confidence 38999999999988888888899 8888853
No 404
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=63.16 E-value=11 Score=32.02 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=26.0
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-|+|.|+||.|+.++......|. +|.++.++
T Consensus 32 DViIVGaGPsGLtAAyyLAk~g~-kV~i~E~~ 62 (262)
T COG1635 32 DVIIVGAGPSGLTAAYYLAKAGL-KVAIFERK 62 (262)
T ss_pred cEEEECcCcchHHHHHHHHhCCc-eEEEEEee
Confidence 36777999999999998888899 88887654
No 405
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=62.85 E-value=12 Score=33.49 Aligned_cols=37 Identities=35% Similarity=0.396 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..|++|.|+|.|.+|+..++=++.+|. .+.-..+...
T Consensus 160 ~~gK~vgilG~G~IG~~ia~rL~~Fg~-~i~y~~r~~~ 196 (336)
T KOG0069|consen 160 LEGKTVGILGLGRIGKAIAKRLKPFGC-VILYHSRTQL 196 (336)
T ss_pred ccCCEEEEecCcHHHHHHHHhhhhccc-eeeeecccCC
Confidence 468999999999999999999999995 6666655444
No 406
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=62.81 E-value=32 Score=30.10 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=40.2
Q ss_pred ccchhhHhHHHHHHHhcCC-CCCCEEEEECCC-HHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~-~~g~~VlI~GaG-~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+.+|+....+. +++..++ -.|++++|+|-| -+|.-++.++...|+ +|++..+...
T Consensus 143 ~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVtv~hs~T~ 199 (287)
T PRK14176 143 LVPCTPHGVIR-ALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNA-TVSVCHVFTD 199 (287)
T ss_pred CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-EEEEEeccCC
Confidence 45655444454 3444444 589999999985 699999999999999 8887775543
No 407
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=62.75 E-value=12 Score=34.84 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=29.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..-.|++|+|+|+|..|.-.+.-+...|+ +|....|++.
T Consensus 171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga-~vt~~qRs~~ 209 (443)
T COG2072 171 EDLRGKRVLVIGAGASAVDIAPELAEVGA-SVTLSQRSPP 209 (443)
T ss_pred cccCCCeEEEECCCccHHHHHHHHHhcCC-eeEEEecCCC
Confidence 34679999999998777655555555666 8999888764
No 408
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=62.74 E-value=17 Score=30.98 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=42.4
Q ss_pred hhHhHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 185 GVSTGVGA-AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 185 ~~~ta~~~-l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.....|+- +....+..+|.+||=++ +++|-.+..+++..|-.+|+++|.+++-++.+
T Consensus 34 g~~~~Wr~~~i~~~~~~~g~~vLDva-~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a 91 (238)
T COG2226 34 GLHRLWRRALISLLGIKPGDKVLDVA-CGTGDMALLLAKSVGTGEVVGLDISESMLEVA 91 (238)
T ss_pred cchHHHHHHHHHhhCCCCCCEEEEec-CCccHHHHHHHHhcCCceEEEEECCHHHHHHH
Confidence 44455553 44555666899998774 45688889999998877999999998776654
No 409
>PRK07402 precorrin-6B methylase; Provisional
Probab=62.63 E-value=22 Score=28.66 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=31.1
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.......++++||=+|+| .|..+..+++.....+|++++.+++..+.+
T Consensus 32 l~~~l~~~~~~~VLDiG~G-~G~~~~~la~~~~~~~V~~vD~s~~~~~~a 80 (196)
T PRK07402 32 LISQLRLEPDSVLWDIGAG-TGTIPVEAGLLCPKGRVIAIERDEEVVNLI 80 (196)
T ss_pred HHHhcCCCCCCEEEEeCCC-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 3455677788888877753 233344455544323899999998765543
No 410
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=62.49 E-value=14 Score=36.02 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=30.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..|++|+|+|+|.+|+-++..+..+|+.+|..+.+.
T Consensus 466 ~~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~ 501 (654)
T PRK12769 466 TAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR 501 (654)
T ss_pred CCCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec
Confidence 367899999999999999998899998678776654
No 411
>PLN02661 Putative thiazole synthesis
Probab=62.28 E-value=13 Score=33.65 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~ 236 (243)
.-.|+|+|+|+.|+.++..+... |+ +|+++.++.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~-kV~viEk~~ 126 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNV-KVAIIEQSV 126 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCC-eEEEEecCc
Confidence 34689999999999988888754 78 899988754
No 412
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=62.11 E-value=11 Score=27.06 Aligned_cols=25 Identities=32% Similarity=0.219 Sum_probs=19.7
Q ss_pred eeEEEEEeCCCC---------CccCCCCEEEeec
Q 026140 78 AIGVVESVGENV---------DGVVEGDVVIPHF 102 (243)
Q Consensus 78 ~~G~Vv~vG~~v---------~~~~~Gd~Vv~~~ 102 (243)
..|+|+++|++. ..+++||+|+...
T Consensus 35 ~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~ 68 (93)
T cd00320 35 QEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPK 68 (93)
T ss_pred eEEEEEEECCCeECCCCCCccccccCCCEEEECC
Confidence 469999999973 3599999997543
No 413
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=62.05 E-value=16 Score=29.67 Aligned_cols=43 Identities=21% Similarity=0.181 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
+.++.+||-+|.| .|..+..+++.....+|++++.+++.++.+
T Consensus 43 l~~g~~VLDiGcG-tG~~al~la~~~~~~~V~giD~s~~~l~~A 85 (187)
T PRK00107 43 LPGGERVLDVGSG-AGFPGIPLAIARPELKVTLVDSLGKKIAFL 85 (187)
T ss_pred cCCCCeEEEEcCC-CCHHHHHHHHHCCCCeEEEEeCcHHHHHHH
Confidence 4458899998863 234444555544333999999998765543
No 414
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=62.05 E-value=24 Score=28.16 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=32.5
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.....+.++++||=+|.|. |..+..+++.....+|++++.+++.++.+
T Consensus 24 ~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a 71 (187)
T PRK08287 24 LSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLI 71 (187)
T ss_pred HHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence 3455677888988887643 55555666655333899999998765543
No 415
>PRK01581 speE spermidine synthase; Validated
Probab=61.97 E-value=15 Score=33.39 Aligned_cols=43 Identities=26% Similarity=0.224 Sum_probs=31.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
....++|||+|.| .|.++..+++..+..+|++++.+++-.+++
T Consensus 148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelA 190 (374)
T PRK01581 148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMA 190 (374)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHH
Confidence 3456799999854 555667777766666999999988766554
No 416
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=61.88 E-value=33 Score=30.23 Aligned_cols=42 Identities=12% Similarity=-0.001 Sum_probs=28.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhhc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~~ 241 (243)
...+++.|+|+|..+...+..+. .+..++|.+.++++++.+.
T Consensus 126 ~~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~ 168 (313)
T PF02423_consen 126 PDARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEA 168 (313)
T ss_dssp TT--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHH
T ss_pred CCCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHH
Confidence 45578999999999988887776 5789999999999877653
No 417
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=61.83 E-value=15 Score=33.87 Aligned_cols=35 Identities=26% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-++..++.+|. +|+.+.+.+
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~-~Vtli~~~~ 203 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFASLGS-KVTVIEMLD 203 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCC
Confidence 45789999999999999998889999 788887654
No 418
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=61.83 E-value=21 Score=29.43 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=33.8
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCchhhhcC
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIG 242 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~-~~vi~~~~~~~~~~~~ 242 (243)
+.....++++++||=+|.| .|..+..+++..+. .+|++++.+++-.+.+
T Consensus 69 ~~~~l~~~~~~~VLDiG~G-sG~~a~~la~~~~~~g~V~~vD~~~~~~~~A 118 (215)
T TIGR00080 69 MTELLELKPGMKVLEIGTG-SGYQAAVLAEIVGRDGLVVSIERIPELAEKA 118 (215)
T ss_pred HHHHhCCCCcCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Confidence 4566778999999999864 24555566666542 3699999887665543
No 419
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=61.74 E-value=14 Score=30.29 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=32.7
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCeEEEEcCCchhhh
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFE 240 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g--~~~vi~~~~~~~~~~ 240 (243)
......++.+||-+|.|. |..+..+++..+ . ++++++.+++.++
T Consensus 45 ~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~-~v~~~D~s~~~~~ 90 (239)
T PRK00216 45 KWLGVRPGDKVLDLACGT-GDLAIALAKAVGKTG-EVVGLDFSEGMLA 90 (239)
T ss_pred HHhCCCCCCeEEEeCCCC-CHHHHHHHHHcCCCC-eEEEEeCCHHHHH
Confidence 344556788999998876 777777777765 5 8999998876544
No 420
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=61.66 E-value=12 Score=36.50 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=25.3
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
|||+|+|..|+.++.-|...|+ +|+++....
T Consensus 53 VlVIG~G~AGl~AAl~Aae~G~-~VilveK~~ 83 (635)
T PLN00128 53 AVVVGAGGAGLRAAIGLSEHGF-NTACITKLF 83 (635)
T ss_pred EEEECccHHHHHHHHHHHhcCC-cEEEEEcCC
Confidence 8999999999987777777899 888887543
No 421
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=61.63 E-value=11 Score=39.23 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
.-|++|.|+|.|+.|++++.-+..+|- .|++..|++.
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk~gh-~v~vyer~dr 1819 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNKAGH-TVTVYERSDR 1819 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhhcCc-EEEEEEecCC
Confidence 458999999999999999999999999 8999988764
No 422
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=61.50 E-value=17 Score=31.96 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=28.9
Q ss_pred HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 194 ~~~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
.....+++|. .+|-+. |.+|.+.+.+|+.+|++-++++.
T Consensus 54 e~~G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP 93 (300)
T COG0031 54 EKRGLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMP 93 (300)
T ss_pred HHcCCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeC
Confidence 3456688998 445565 99999999999999994444443
No 423
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=61.44 E-value=15 Score=33.83 Aligned_cols=35 Identities=20% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-++..++.+|. +|.++.+.+
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~~G~-~Vtli~~~~ 199 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRGLGV-QVTLIYRGE 199 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEeCC
Confidence 46899999999999999999999999 788887654
No 424
>PRK06116 glutathione reductase; Validated
Probab=61.38 E-value=17 Score=33.47 Aligned_cols=35 Identities=17% Similarity=0.068 Sum_probs=30.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~~g~-~Vtlv~~~~ 200 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNGLGS-ETHLFVRGD 200 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 46899999999999999999999999 888887654
No 425
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=61.17 E-value=25 Score=31.19 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 198 ~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
....++-|+|.|. +++|..++.-+...|+ .|++-.-.++..+
T Consensus 25 ~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf-~V~Agcl~~~gae 67 (322)
T KOG1610|consen 25 DSLSDKAVLITGCDSGFGRLLAKKLDKKGF-RVFAGCLTEEGAE 67 (322)
T ss_pred cccCCcEEEEecCCcHHHHHHHHHHHhcCC-EEEEEeecCchHH
Confidence 3455677999998 9999998888889999 8888876655433
No 426
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=61.08 E-value=47 Score=29.44 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=33.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
.+..+++.|+|+|..|...+.... .....+|.+.+++.++.+
T Consensus 125 ~~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~ 167 (325)
T TIGR02371 125 RKDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTRE 167 (325)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHH
Confidence 355689999999999988766554 467779999999988864
No 427
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=60.57 E-value=16 Score=33.86 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..++++|+|+|.+|+-++..++.+|. +|..+.+.+
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~ 203 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSRLGT-KVTIVEMAP 203 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEecCC
Confidence 35789999999999998888888998 788777653
No 428
>PTZ00058 glutathione reductase; Provisional
Probab=60.56 E-value=14 Score=35.44 Aligned_cols=30 Identities=30% Similarity=0.329 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
|+|+|+|+-|+.++.-+...|. +|.++.+.
T Consensus 51 vvVIG~G~aG~~aA~~aa~~G~-~ValIEk~ 80 (561)
T PTZ00058 51 LIVIGGGSGGMAAARRAARNKA-KVALVEKD 80 (561)
T ss_pred EEEECcCHHHHHHHHHHHHcCC-eEEEEecc
Confidence 8888999999999999999999 89888854
No 429
>PLN02366 spermidine synthase
Probab=60.44 E-value=12 Score=33.14 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
...++||++|.|. |.++..+++.-+..+|++++.+++-.+
T Consensus 90 ~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~ 129 (308)
T PLN02366 90 PNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVID 129 (308)
T ss_pred CCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHH
Confidence 5578999998754 555667777766668888887775444
No 430
>PRK14727 putative mercuric reductase; Provisional
Probab=60.40 E-value=19 Score=33.67 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=29.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.+++++|+|+|.+|+-+++.+..+|. +|..+.+.
T Consensus 187 ~~k~vvVIGgG~iG~E~A~~l~~~G~-~Vtlv~~~ 220 (479)
T PRK14727 187 LPASLTVIGSSVVAAEIAQAYARLGS-RVTILARS 220 (479)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEEcC
Confidence 45899999999999999999999999 88888753
No 431
>PLN02529 lysine-specific histone demethylase 1
Probab=60.38 E-value=15 Score=36.55 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=29.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+.|+|+|+|..|+.++..+...|. +|+++..++
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~-~v~v~E~~~ 193 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGF-KVVVLEGRN 193 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCC-cEEEEecCc
Confidence 4679999999999999999999999 788887654
No 432
>PRK13748 putative mercuric reductase; Provisional
Probab=60.31 E-value=17 Score=34.48 Aligned_cols=34 Identities=12% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.+++++|+|+|.+|+-++..+..+|. +|.++.+.
T Consensus 269 ~~~~vvViGgG~ig~E~A~~l~~~g~-~Vtli~~~ 302 (561)
T PRK13748 269 IPERLAVIGSSVVALELAQAFARLGS-KVTILARS 302 (561)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-EEEEEecC
Confidence 45899999999999999999999999 88888764
No 433
>PRK12862 malic enzyme; Reviewed
Probab=60.17 E-value=27 Score=34.89 Aligned_cols=46 Identities=17% Similarity=0.086 Sum_probs=34.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI 235 (243)
Q Consensus 190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~ 235 (243)
++++.....--...+|++.|+|..|...+.+....|.. +++.+|+.
T Consensus 181 ~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 228 (763)
T PRK12862 181 LNGLKLVGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIK 228 (763)
T ss_pred HHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 33443334444567899999999999999999999984 78888843
No 434
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.83 E-value=16 Score=34.93 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=30.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|.+|.-.+..+...|. +|..+.+.+
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~-~Vtli~~~~ 176 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYAS-KVTVIVREP 176 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCC-EEEEEEeCC
Confidence 468999999999999888888778888 888887665
No 435
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=59.63 E-value=15 Score=36.86 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=28.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..+|+|+|+|..|+.++..+...|. +|+++..+
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~-~v~v~E~~ 270 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGF-KVVVLEGR 270 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC-cEEEEecc
Confidence 4679999999999999999999999 78887754
No 436
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=59.63 E-value=12 Score=33.82 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=34.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
+-+|++++|.|=|-+|.-.++-++-+|+ +|+++..++=+
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA-~ViVtEvDPI~ 244 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGA-RVIVTEVDPIR 244 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCC-eEEEEecCchH
Confidence 5689999999889999999999999999 89999877754
No 437
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=59.60 E-value=23 Score=28.62 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=28.7
Q ss_pred CCCCCCEEEEE---CC-CHHHHHHHHHHHHcCCCeEEEEc
Q 026140 198 NVEVGSTVVIF---GL-GSIGLAVAEGARLCGATRIIGVD 233 (243)
Q Consensus 198 ~~~~g~~VlI~---Ga-G~vG~~~v~la~~~g~~~vi~~~ 233 (243)
.+++|++|||+ -+ |+.-.+++.+...+|+ .|+.+.
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga-~vvg~~ 150 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGA-EVVGAA 150 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCC-EEEEEE
Confidence 35699999998 24 8999999999999999 766543
No 438
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=59.37 E-value=19 Score=30.50 Aligned_cols=36 Identities=14% Similarity=0.022 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|..|.-.+..+...+. +|..+.+.+
T Consensus 139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~-~V~~v~~~~ 174 (300)
T TIGR01292 139 FKNKEVAVVGGGDSAIEEALYLTRIAK-KVTLVHRRD 174 (300)
T ss_pred cCCCEEEEECCChHHHHHHHHHHhhcC-EEEEEEeCc
Confidence 357899999999999887777777777 787777654
No 439
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=59.36 E-value=19 Score=29.95 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=36.1
Q ss_pred HHHhcCCCCCCEEEEECC-C--HHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 193 AWRTANVEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~Ga-G--~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..++..+++++.++|+.. | ++..-++.++|..|+ +||++.+-+.
T Consensus 96 ~l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa-~vI~vTSl~y 142 (243)
T COG4821 96 FLHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGA-KVIAVTSLDY 142 (243)
T ss_pred HHHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCC-eEEEEehhhh
Confidence 346678899999888854 4 899999999999999 9999886553
No 440
>PRK10262 thioredoxin reductase; Provisional
Probab=59.30 E-value=19 Score=31.46 Aligned_cols=36 Identities=11% Similarity=0.015 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++|+|+|+|.+|.-++..+...+. +|+.+.+.+
T Consensus 144 ~~g~~vvVvGgG~~g~e~A~~l~~~~~-~Vtlv~~~~ 179 (321)
T PRK10262 144 YRNQKVAVIGGGNTAVEEALYLSNIAS-EVHLIHRRD 179 (321)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhhCC-EEEEEEECC
Confidence 358899999999999887777777787 888887654
No 441
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=59.26 E-value=19 Score=37.19 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=31.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCc
Q 026140 198 NVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS 236 (243)
Q Consensus 198 ~~~~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~ 236 (243)
....|++|+|+|+|.+|+-++..+... |+.+|..+.+.+
T Consensus 664 ~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 664 ALKLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred cccCCCEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 356799999999999999888877766 655788887654
No 442
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.12 E-value=10 Score=33.79 Aligned_cols=33 Identities=18% Similarity=0.430 Sum_probs=27.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.+|||+|||++|.-...-...+|++.+-+++..
T Consensus 41 ~kiLviGAGGLGCElLKnLal~gF~~~~viDmD 73 (422)
T KOG2015|consen 41 CKILVIGAGGLGCELLKNLALSGFRQLHVIDMD 73 (422)
T ss_pred CcEEEEccCcccHHHHHhHHhhccceeEEEeec
Confidence 679999999999987777778898777776644
No 443
>PRK12861 malic enzyme; Reviewed
Probab=59.02 E-value=25 Score=35.10 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcC
Q 026140 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDV 234 (243)
Q Consensus 190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~ 234 (243)
++++.....--...+|++.|+|..|...+.+....|.. +++.+|+
T Consensus 177 lnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~ 223 (764)
T PRK12861 177 INGLKVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDI 223 (764)
T ss_pred HHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcC
Confidence 34444444444567999999999999999999999985 7888883
No 444
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=59.01 E-value=29 Score=35.69 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=31.9
Q ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 196 ~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
.....+|++|+|+|+|.+|+..+..+...|...|.++...
T Consensus 311 ~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~ 350 (985)
T TIGR01372 311 RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR 350 (985)
T ss_pred hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC
Confidence 3445689999999999999998888888997556666554
No 445
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.86 E-value=44 Score=29.16 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=40.2
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++++|+|- ..+|.=+..++...|+ +|+...+...
T Consensus 137 ~~PcTp~av~~-lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~A-tVt~chs~T~ 193 (278)
T PRK14172 137 FLPCTPNSVIT-LIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENA-TVTICHSKTK 193 (278)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCC-EEEEeCCCCC
Confidence 45655454555 444444 358999999997 6999999999999999 8888765554
No 446
>PLN02507 glutathione reductase
Probab=58.19 E-value=16 Score=34.48 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
|+|+|+|+-|+.++..|..+|. +|.+++.
T Consensus 28 vvVIG~GpaG~~aA~~a~~~G~-~V~liE~ 56 (499)
T PLN02507 28 LFVIGAGSGGVRAARFSANFGA-KVGICEL 56 (499)
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 8999999999999999999999 9999984
No 447
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.18 E-value=45 Score=29.20 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=40.2
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
.++|+....+. +++..+ --.|++++|+|- ..+|.=+..++...|+ +|+...+....
T Consensus 138 ~~PcTp~avi~-ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~a-tVt~chs~T~~ 195 (284)
T PRK14177 138 YLPCTPYGMVL-LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNA-TVTLCHSKTQN 195 (284)
T ss_pred CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCC-EEEEeCCCCCC
Confidence 45554444444 344444 468999999997 6999999999999999 88887765543
No 448
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=57.98 E-value=18 Score=25.80 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=27.6
Q ss_pred CCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCCchhh
Q 026140 202 GSTVVIFGLGSIGLAVAE-GARLCGATRIIGVDVISEKF 239 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~-la~~~g~~~vi~~~~~~~~~ 239 (243)
..+++|+|+|.+|.+... ..+..|++.+.+.+.++++.
T Consensus 3 ~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~ 41 (96)
T PF02629_consen 3 KTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI 41 (96)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT
T ss_pred CCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc
Confidence 357899999999876553 34467886777888777654
No 449
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=57.97 E-value=34 Score=34.17 Aligned_cols=46 Identities=22% Similarity=0.154 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 026140 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI 235 (243)
Q Consensus 190 ~~~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~--~vi~~~~~ 235 (243)
++++.....--...+|++.|+|..|...+.+....|.. +++.+|+.
T Consensus 173 ~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~ 220 (752)
T PRK07232 173 LNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSK 220 (752)
T ss_pred HHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCC
Confidence 33443344444567899999999999999999989984 78888854
No 450
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=57.90 E-value=21 Score=33.27 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..+++++|+|+|.+|+-.+..+..+|+.+|.++.+.+
T Consensus 280 ~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 280 VEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3689999999999999998888899986788887643
No 451
>PLN02676 polyamine oxidase
Probab=57.81 E-value=30 Score=32.48 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=28.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
....|+|+|+|..|++++..++..|..+|+++...+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 345799999999999999998888974587777554
No 452
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.54 E-value=47 Score=29.03 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=39.3
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++|+....+. +++..+ --.|++++|+|- ..+|.=+..++...|+ +|+...+..
T Consensus 137 ~~PcTp~aii~-lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~A-TVt~chs~T 192 (282)
T PRK14180 137 LESCTPKGIMT-MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFT 192 (282)
T ss_pred cCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCC-EEEEEcCCC
Confidence 45655554555 344433 457999999997 6999999999999999 888776554
No 453
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=57.44 E-value=42 Score=32.18 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=29.5
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH----HcCC------CeEEEEcCC
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGAR----LCGA------TRIIGVDVI 235 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~----~~g~------~~vi~~~~~ 235 (243)
+.....--...++++.|+|..|...+.+.. ..|. ++++.+|+.
T Consensus 288 lr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~ 340 (559)
T PTZ00317 288 LKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSK 340 (559)
T ss_pred HHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 333334445678999999988877666655 3687 678888754
No 454
>PRK14694 putative mercuric reductase; Provisional
Probab=57.43 E-value=21 Score=33.12 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=28.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
.+++++|+|+|.+|+-++..++.+|. +|+++.+
T Consensus 177 ~~~~vvViG~G~~G~E~A~~l~~~g~-~Vtlv~~ 209 (468)
T PRK14694 177 IPERLLVIGASVVALELAQAFARLGS-RVTVLAR 209 (468)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEC
Confidence 35799999999999999999999999 7888865
No 455
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=57.42 E-value=21 Score=30.50 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=34.0
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
+....++.++.+||=+|.|. |..+..+++..++ +|++++.+++-.+.
T Consensus 44 ~l~~l~l~~~~~VLDiGcG~-G~~a~~la~~~~~-~v~giD~s~~~~~~ 90 (263)
T PTZ00098 44 ILSDIELNENSKVLDIGSGL-GGGCKYINEKYGA-HVHGVDICEKMVNI 90 (263)
T ss_pred HHHhCCCCCCCEEEEEcCCC-ChhhHHHHhhcCC-EEEEEECCHHHHHH
Confidence 45667889999999888752 4445566666788 89999988765443
No 456
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=57.21 E-value=23 Score=32.52 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=30.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++++|+|+|.+|+-.+..+...|. +|..+.+.+
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~-~Vtli~~~~ 191 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS-KVTILEAAS 191 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 45799999999999999999999999 888887654
No 457
>PLN02507 glutathione reductase
Probab=56.94 E-value=20 Score=33.81 Aligned_cols=34 Identities=24% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++|+|+|+|.+|+-.+..++.+|. +|..+.+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~-~Vtli~~~~ 236 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA-TVDLFFRKE 236 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC-eEEEEEecC
Confidence 6799999999999999898899999 888887654
No 458
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=56.87 E-value=28 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=31.7
Q ss_pred hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 196 TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 196 ~~~~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
......+.+|+|.|+ |.+|.-++.-+...|- +||++|.-
T Consensus 21 ~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh-~VIa~Dn~ 60 (350)
T KOG1429|consen 21 QVKPSQNLRILITGGAGFIGSHLVDKLMTEGH-EVIALDNY 60 (350)
T ss_pred cccCCCCcEEEEecCcchHHHHHHHHHHhcCC-eEEEEecc
Confidence 344556789999987 9999998888888895 99999853
No 459
>PRK14852 hypothetical protein; Provisional
Probab=56.75 E-value=19 Score=36.86 Aligned_cols=36 Identities=25% Similarity=0.190 Sum_probs=31.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|.|++|..++.....+|.+++..+|-..
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~ 366 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDA 366 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCE
Confidence 357899999999999999999999999998888654
No 460
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.73 E-value=50 Score=28.91 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=39.8
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++++|+|- .-+|.=+..++...++ +|+...+...
T Consensus 137 ~~PcTp~av~~-lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~a-tVt~chs~t~ 193 (284)
T PRK14190 137 FLPCTPHGILE-LLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENA-TVTYCHSKTK 193 (284)
T ss_pred CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEeCCch
Confidence 45655444444 344444 368999999997 6999999999999999 8877765543
No 461
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=56.59 E-value=20 Score=32.35 Aligned_cols=36 Identities=31% Similarity=0.272 Sum_probs=26.0
Q ss_pred CCCCEEEEECCCHHHHHHHH-HHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAE-GARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~-la~~~g~~~vi~~~~~ 235 (243)
...--|+|+|+|.+|++++. +++..|..+|+++++.
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~ 64 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKG 64 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 34446899999999988664 5554584479888865
No 462
>PRK04457 spermidine synthase; Provisional
Probab=56.55 E-value=21 Score=30.61 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
.++++||++|.|+ |.++..+++.....++++++.+++-.+.+
T Consensus 65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A 106 (262)
T PRK04457 65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVA 106 (262)
T ss_pred CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence 4568999998754 66777777776544899999988765543
No 463
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=56.30 E-value=41 Score=32.43 Aligned_cols=44 Identities=30% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEcCC
Q 026140 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-----CGA------TRIIGVDVI 235 (243)
Q Consensus 192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~-----~g~------~~vi~~~~~ 235 (243)
++......-...+|++.|+|..|...+.+... .|. ++++.+|+.
T Consensus 311 A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~ 365 (581)
T PLN03129 311 ALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSK 365 (581)
T ss_pred HHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCC
Confidence 33333444456789999999888877766654 466 578887754
No 464
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.00 E-value=44 Score=29.25 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=38.3
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
+++|+....+. +++..+ --.|++|+|+|- +.+|.-++.++...|+ +|++..+.
T Consensus 137 ~~PcTp~avi~-lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~ga-tVtv~~s~ 191 (284)
T PRK14179 137 MIPCTPAGIME-MFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNA-TVTLTHSR 191 (284)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCC-EEEEECCC
Confidence 44555444444 334444 368999999998 8999999999999999 78877433
No 465
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=55.92 E-value=17 Score=38.18 Aligned_cols=31 Identities=32% Similarity=0.500 Sum_probs=27.2
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
|||+|+|..|++++.-|...|+ +|+++...+
T Consensus 412 VvVVG~G~AGl~AAi~Aae~Ga-~VivlEK~~ 442 (1167)
T PTZ00306 412 VIVVGGGLAGCSAAIEAASCGA-QVILLEKEA 442 (1167)
T ss_pred EEEECCCHHHHHHHHHHHHCCC-cEEEEEccC
Confidence 8999999999998888888999 899988654
No 466
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=55.82 E-value=21 Score=33.72 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
..+++|+|+|+|.+|.-++..+..++. +|+++.+.
T Consensus 350 ~~~k~VvViGgG~~g~E~A~~L~~~g~-~Vtli~~~ 384 (515)
T TIGR03140 350 FKGKDVAVIGGGNSGIEAAIDLAGIVR-HVTVLEFA 384 (515)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhcCc-EEEEEEeC
Confidence 468899999999999888887777787 78877654
No 467
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=55.61 E-value=22 Score=36.66 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=30.9
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~-g~~~vi~~~~~~ 236 (243)
...|++|+|+|+|.+|+-++..+... |+.+|..+.+..
T Consensus 663 ~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 663 NPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred cccCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 45799999999999999888877765 876788877654
No 468
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=55.34 E-value=44 Score=30.27 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~G-aG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|.|+| .|.+|...+..++..|. .|++.++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~~ 132 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQDD 132 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCCc
Confidence 347899998 69999999999999998 899988754
No 469
>PTZ00052 thioredoxin reductase; Provisional
Probab=55.30 E-value=23 Score=33.35 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=28.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
.+++++|+|+|.+|.-+++.+..+|. +|.++.+
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~~G~-~Vtli~~ 213 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNELGF-DVTVAVR 213 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC-cEEEEEc
Confidence 45689999999999999999999999 7888865
No 470
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=55.20 E-value=34 Score=28.20 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=29.7
Q ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHH--HHcCCCeEEEE-cCCchh
Q 026140 194 WRTANVEVGSTVVIFGLGSIGLAVAEGA--RLCGATRIIGV-DVISEK 238 (243)
Q Consensus 194 ~~~~~~~~g~~VlI~GaG~vG~~~v~la--~~~g~~~vi~~-~~~~~~ 238 (243)
....+.....+|+|+|+|.+|..++... ...|+ +++++ +.++++
T Consensus 76 ~~~l~~~~~~rV~IIGaG~iG~~l~~~~~~~~~g~-~ivgv~D~d~~~ 122 (213)
T PRK05472 76 EKILGLDRTWNVALVGAGNLGRALLNYNGFEKRGF-KIVAAFDVDPEK 122 (213)
T ss_pred HHHhCCCCCcEEEEECCCHHHHHHHHhhhcccCCc-EEEEEEECChhh
Confidence 3445566678999999999998877753 24678 56654 444333
No 471
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=55.05 E-value=35 Score=28.30 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=29.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
..++.+||+.|.| .|.-++.+| ..|. .|++++.++.-++
T Consensus 32 ~~~~~rvLd~GCG-~G~da~~LA-~~G~-~V~gvD~S~~Ai~ 70 (213)
T TIGR03840 32 LPAGARVFVPLCG-KSLDLAWLA-EQGH-RVLGVELSEIAVE 70 (213)
T ss_pred CCCCCeEEEeCCC-chhHHHHHH-hCCC-eEEEEeCCHHHHH
Confidence 3577899999764 356666666 4799 8999999987544
No 472
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=55.04 E-value=24 Score=32.75 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=29.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++++|+|+|.+|.-.++.++.+|. +|..+.+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~-~Vtli~~~~ 210 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV-KVTLVSSRD 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 5789999999999998888889999 888887644
No 473
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=55.03 E-value=11 Score=28.67 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=27.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.-+|-|+|+|.+|..+...++..|. .|..+.+.+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs 43 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH-EVVGVYSRS 43 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCC
Confidence 3578999999999999999999999 788875443
No 474
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=54.55 E-value=15 Score=26.49 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=18.6
Q ss_pred eEEEEEeCCCCC---------ccCCCCEEEee
Q 026140 79 IGVVESVGENVD---------GVVEGDVVIPH 101 (243)
Q Consensus 79 ~G~Vv~vG~~v~---------~~~~Gd~Vv~~ 101 (243)
.|+|+++|++.. .+++||+|+..
T Consensus 37 ~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~ 68 (95)
T PRK00364 37 EGEVVAVGPGRRLDNGERVPLDVKVGDKVLFG 68 (95)
T ss_pred eEEEEEECCCeECCCCCEeecccCCCCEEEEc
Confidence 699999998642 48999999754
No 475
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=54.37 E-value=22 Score=34.96 Aligned_cols=35 Identities=20% Similarity=0.368 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+++|+|+|+|.+|+-.+++...+|. +|..+.+.+
T Consensus 311 lpk~VvIVGgG~iGvE~A~~l~~~G~-eVTLIe~~~ 345 (659)
T PTZ00153 311 LQNYMGIVGMGIIGLEFMDIYTALGS-EVVSFEYSP 345 (659)
T ss_pred cCCceEEECCCHHHHHHHHHHHhCCC-eEEEEeccC
Confidence 36799999999999999999889999 888888654
No 476
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=54.25 E-value=20 Score=35.19 Aligned_cols=31 Identities=32% Similarity=0.196 Sum_probs=27.6
Q ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 026140 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235 (243)
Q Consensus 204 ~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~ 235 (243)
-|+|+|+|+-|+.++.-|..+|. +|.+++..
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~-kV~lie~~ 148 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGL-KVIIFTGD 148 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence 38888999999999999999999 89999854
No 477
>PLN02712 arogenate dehydrogenase
Probab=54.01 E-value=30 Score=34.02 Aligned_cols=37 Identities=16% Similarity=0.224 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
..+.+|.|+|.|.+|...+..++..|. +|++.++++.
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~~~ 403 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRSDY 403 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECChH
Confidence 356789999999999999998888898 8999988754
No 478
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=53.96 E-value=23 Score=35.40 Aligned_cols=36 Identities=19% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+.+++++|+|+|.+|+-++..++.+|. +|.++...+
T Consensus 138 ~~~k~vvVVGgG~~GlE~A~~L~~~G~-~Vtvv~~~~ 173 (785)
T TIGR02374 138 QRFKKAAVIGGGLLGLEAAVGLQNLGM-DVSVIHHAP 173 (785)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHhcCC-eEEEEccCC
Confidence 467899999999999999999999999 888877654
No 479
>PRK13529 malate dehydrogenase; Provisional
Probab=53.78 E-value=52 Score=31.65 Aligned_cols=44 Identities=27% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCEEEEECCCHHHHHHHHHHHH----cCC------CeEEEEcCC
Q 026140 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARL----CGA------TRIIGVDVI 235 (243)
Q Consensus 192 ~l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~----~g~------~~vi~~~~~ 235 (243)
++.....--...++++.|+|..|...+.+... .|. ++++.+|+.
T Consensus 285 A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~ 338 (563)
T PRK13529 285 ALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQ 338 (563)
T ss_pred HHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCC
Confidence 33333444456789999998877776666654 577 478888764
No 480
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=53.55 E-value=27 Score=32.85 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=28.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHc---CCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~---g~~~vi~~~~~~ 236 (243)
..+++++|+|+|.+|+-.+++...+ |. +|..+.+.+
T Consensus 185 ~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~-~Vtli~~~~ 223 (486)
T TIGR01423 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGG-KVTLCYRNN 223 (486)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHhccCCC-eEEEEecCC
Confidence 3568999999999998877766554 88 888887654
No 481
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=53.47 E-value=8.8 Score=35.90 Aligned_cols=31 Identities=32% Similarity=0.399 Sum_probs=26.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEE
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRII 230 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi 230 (243)
.-.|++|+|+|-|.+|++.+.-++..|. +|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGv-nVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGL-DIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccc-eeE
Confidence 3578999999999999988888888899 565
No 482
>PLN02712 arogenate dehydrogenase
Probab=53.40 E-value=31 Score=33.94 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchh
Q 026140 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238 (243)
Q Consensus 202 g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~ 238 (243)
..+|.|+|.|.+|...+..++..|. +|++.++++.+
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~ 87 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGH-TVLAHSRSDHS 87 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence 3579999999999999988888898 89999887543
No 483
>PLN02612 phytoene desaturase
Probab=52.93 E-value=25 Score=33.68 Aligned_cols=37 Identities=27% Similarity=0.224 Sum_probs=31.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 199 ~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
..++.+|+|+|+|..|+.++..+...|. +|+++..++
T Consensus 90 ~~~~~~v~iiG~G~~Gl~~a~~l~~~g~-~~~~~e~~~ 126 (567)
T PLN02612 90 PAKPLKVVIAGAGLAGLSTAKYLADAGH-KPILLEARD 126 (567)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHhcCC-eEEEEecCC
Confidence 4556789999999999999998888998 788887654
No 484
>PRK07589 ornithine cyclodeaminase; Validated
Probab=52.88 E-value=67 Score=28.87 Aligned_cols=41 Identities=20% Similarity=0.124 Sum_probs=33.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
+..++++|+|+|..+...++.+. .+..++|.+.+++.++.+
T Consensus 127 ~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~ 168 (346)
T PRK07589 127 PDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATA 168 (346)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHH
Confidence 45678999999999988776555 578889999999988754
No 485
>PLN02487 zeta-carotene desaturase
Probab=52.83 E-value=27 Score=33.62 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=28.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 203 ~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+|+|+|+|..|+.++..+...|. +|.++...+
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~-~v~i~E~~~ 108 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRP 108 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-eeEEEecCC
Confidence 389999999999998888888898 888887654
No 486
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=52.76 E-value=21 Score=33.25 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=32.9
Q ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhhc
Q 026140 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241 (243)
Q Consensus 195 ~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~~ 241 (243)
....++++.+||=+|.|. |..+..+++..++ +|++++.+++-++.
T Consensus 260 ~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvDiS~~~l~~ 304 (475)
T PLN02336 260 DKLDLKPGQKVLDVGCGI-GGGDFYMAENFDV-HVVGIDLSVNMISF 304 (475)
T ss_pred HhcCCCCCCEEEEEeccC-CHHHHHHHHhcCC-EEEEEECCHHHHHH
Confidence 344567888999988654 4455677777788 89999998765544
No 487
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=52.47 E-value=51 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.089 Sum_probs=33.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCCchhhh
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFE 240 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~-~~g~~~vi~~~~~~~~~~ 240 (243)
+..+++.|+|+|.-+...++.+. ...+++|.+.+++.++.+
T Consensus 115 ~da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~ 156 (301)
T PRK06407 115 KNVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHAR 156 (301)
T ss_pred cCCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHH
Confidence 46689999999999988777666 468989999999988754
No 488
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=52.45 E-value=47 Score=27.06 Aligned_cols=45 Identities=27% Similarity=0.280 Sum_probs=30.2
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+....+.+++++||=+|.|. |..+..+++.. . +|++++.+++..+
T Consensus 70 l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~ 114 (212)
T PRK00312 70 MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQW 114 (212)
T ss_pred HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHH
Confidence 34567788999999998742 33344455543 3 7999998876544
No 489
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.43 E-value=62 Score=28.38 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=39.9
Q ss_pred ccchhhHhHHHHHHHhcCC-CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~~-~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..++ -.|++++|+|. ..+|.=+..++...++ +|+..-+...
T Consensus 134 ~~PcTp~avi~-lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~a-TVtichs~T~ 190 (287)
T PRK14173 134 LEPCTPAGVVR-LLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDA-TVTLAHSKTQ 190 (287)
T ss_pred CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEeCCCCC
Confidence 45655444444 4455554 47999999998 6999999999999999 7877765554
No 490
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.22 E-value=63 Score=28.42 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=39.4
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++++|+|- .-+|.=+..++...++ +|+...+...
T Consensus 139 ~~PcTp~avi~-lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~a-TVt~chs~T~ 195 (294)
T PRK14187 139 LIPCTPKGCLY-LIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENC-TVTTVHSATR 195 (294)
T ss_pred ccCcCHHHHHH-HHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCC-EEEEeCCCCC
Confidence 45554444444 334433 467999999997 6999999999999999 8887776543
No 491
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=51.63 E-value=66 Score=28.36 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=39.8
Q ss_pred cccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 180 CLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 180 a~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
++++|+....+. +++..+ --.|++++|+|- .-+|.=+..++...|+ +|+..-+...
T Consensus 145 ~~~PcTp~avi~-lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~A-TVtvchs~T~ 202 (299)
T PLN02516 145 LFLPCTPKGCLE-LLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADA-TVTVVHSRTP 202 (299)
T ss_pred CCCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCC-EEEEeCCCCC
Confidence 345655554554 334333 457999999997 6999999999999999 8888765543
No 492
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.56 E-value=26 Score=33.04 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 200 ~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
.+|++|+|+|+|.+|.-++..+...+. +|+++.+.+
T Consensus 349 ~~gk~VvVVGgG~~g~e~A~~L~~~~~-~Vtlv~~~~ 384 (517)
T PRK15317 349 FKGKRVAVIGGGNSGVEAAIDLAGIVK-HVTVLEFAP 384 (517)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEEECc
Confidence 478999999999999887777777777 788776553
No 493
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.44 E-value=67 Score=28.08 Aligned_cols=55 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCch
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE 237 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~~ 237 (243)
+++|+....+. +++..+ --.|++++|+|- .-+|.=+..++...++ +|+..-+...
T Consensus 136 ~~PcTp~avi~-lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~a-tVt~chs~T~ 192 (282)
T PRK14166 136 FLPCTPLGVMK-LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTK 192 (282)
T ss_pred CcCCCHHHHHH-HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCC-EEEEeCCCCC
Confidence 45655454454 444444 358999999997 6999999999988999 7877765544
No 494
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=51.29 E-value=25 Score=28.56 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=28.9
Q ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCchhhh
Q 026140 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240 (243)
Q Consensus 193 l~~~~~~~~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~~~~~ 240 (243)
+.......++.+||-+|.| .|..+..+++ .|. +|+++|.++.-++
T Consensus 22 l~~~~~~~~~~~vLDiGcG-~G~~a~~la~-~g~-~V~~iD~s~~~l~ 66 (195)
T TIGR00477 22 VREAVKTVAPCKTLDLGCG-QGRNSLYLSL-AGY-DVRAWDHNPASIA 66 (195)
T ss_pred HHHHhccCCCCcEEEeCCC-CCHHHHHHHH-CCC-eEEEEECCHHHHH
Confidence 3344445566788888753 3444455554 577 8999999876544
No 495
>PLN02546 glutathione reductase
Probab=51.29 E-value=24 Score=33.88 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=26.7
Q ss_pred EEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Q 026140 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDV 234 (243)
Q Consensus 205 VlI~GaG~vG~~~v~la~~~g~~~vi~~~~ 234 (243)
|+|+|+|+-|+.++..|..+|. +|.++..
T Consensus 82 vvVIG~GpaG~~aA~~aa~~G~-~V~liE~ 110 (558)
T PLN02546 82 LFTIGAGSGGVRASRFASNFGA-SAAVCEL 110 (558)
T ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence 8999999999999999999999 9999984
No 496
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=51.18 E-value=63 Score=26.63 Aligned_cols=43 Identities=35% Similarity=0.523 Sum_probs=31.1
Q ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcCCCeEEEEcCCchhhhcC
Q 026140 196 TANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242 (243)
Q Consensus 196 ~~~~~~g~~VlI~Ga--G~vG~~~v~la~~~g~~~vi~~~~~~~~~~~~ 242 (243)
..+.-.|++|+=.|+ |.+|+. +..+|+.+|++++..++-++.+
T Consensus 40 ~~g~l~g~~V~DlG~GTG~La~g----a~~lGa~~V~~vdiD~~a~ei~ 84 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGILAIG----AALLGASRVLAVDIDPEALEIA 84 (198)
T ss_pred HcCCcCCCEEEEcCCCcCHHHHH----HHhcCCcEEEEEecCHHHHHHH
Confidence 445668888888876 444443 3468988999999998877654
No 497
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=51.16 E-value=29 Score=32.18 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|++|.-++..+-..|.++++.+|...
T Consensus 19 ~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~ 54 (425)
T cd01493 19 ESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSK 54 (425)
T ss_pred hhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCc
Confidence 457899999999999999988899999999998653
No 498
>PLN03000 amine oxidase
Probab=50.87 E-value=41 Score=34.19 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 201 ~g~~VlI~GaG~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
...+|+|+|+|..|+.++..++..|. +|+++...+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~-~V~VlE~~~ 217 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGF-KVTVLEGRK 217 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCC-cEEEEEccC
Confidence 34789999999999999999999999 788877543
No 499
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=50.80 E-value=39 Score=27.17 Aligned_cols=28 Identities=32% Similarity=0.362 Sum_probs=20.8
Q ss_pred CCCCCEEEEE--CC-CHHHHHHHHHHHHcCC
Q 026140 199 VEVGSTVVIF--GL-GSIGLAVAEGARLCGA 226 (243)
Q Consensus 199 ~~~g~~VlI~--Ga-G~vG~~~v~la~~~g~ 226 (243)
++.|++|+|+ |+ |-.|+.++.+...++-
T Consensus 130 L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~ 160 (168)
T PF05706_consen 130 LENGRKVLVHCRGGLGRTGLVAACLLLELGD 160 (168)
T ss_dssp HHTT--EEEE-SSSSSHHHHHHHHHHHHH-S
T ss_pred HHcCCEEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 4678999999 66 9999999998887663
No 500
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.31 E-value=74 Score=27.81 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=38.9
Q ss_pred ccchhhHhHHHHHHHhcC-CCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCc
Q 026140 181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS 236 (243)
Q Consensus 181 ~~~~~~~ta~~~l~~~~~-~~~g~~VlI~Ga-G~vG~~~v~la~~~g~~~vi~~~~~~ 236 (243)
+++|+....+. +++..+ --.|++++|+|- .-+|.=+..++...|+ +|+..-+..
T Consensus 135 ~~PcTp~avi~-lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~a-tVtichs~T 190 (282)
T PRK14169 135 VVASTPYGIMA-LLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDA-TVTIAHSKT 190 (282)
T ss_pred CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCC-EEEEECCCC
Confidence 45655554454 344444 358999999997 6999999999999999 787775444
Done!