BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026141
(243 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224141741|ref|XP_002324223.1| predicted protein [Populus trichocarpa]
gi|222865657|gb|EEF02788.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/242 (84%), Positives = 225/242 (92%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME DR DGR+P+QLRPL+C+ ++LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MESDRDDGRSPSQLRPLSCARNVLHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
IEVIWKP+TGQIGK EKE+E+ILKRTLQSICILT+NPNTTTS+I+QVV+DDGALL CAI
Sbjct: 61 CIEVIWKPKTGQIGKLEKEFEMILKRTLQSICILTLNPNTTTSIIVQVVNDDGALLVCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIPMKHLAVAICCC AE GY ILDPTKLEEQKM+GF YLVFPNS++SVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAEGGYVILDPTKLEEQKMRGFTYLVFPNSVVSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGSS V+GEPMEHGIITSVTHG MSV++Y CLERGRAAS KLSDFLRRSLQS+LP D S
Sbjct: 181 EGSSHVEGEPMEHGIITSVTHGVMSVEEYLKCLERGRAASTKLSDFLRRSLQSQLPSDSS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|449511723|ref|XP_004164036.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 195/242 (80%), Positives = 220/242 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR PNQLRPLACSC++L+RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILT NPNTTTS+I+QV+HDDGALLPCAI
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA+CAALVDAGIP+KHLAVAI CC +E+GY ILDPTK+EE+KMK +LVFPN+ +SV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGS+ GEP+EHGIITSVT GAMSVDDY HCLERGRAA+ K+S FLRRSLQ +LP D S
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMDSS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|449465139|ref|XP_004150286.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Cucumis
sativus]
Length = 243
Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust.
Identities = 194/242 (80%), Positives = 220/242 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR PNQLRPLACSC++L+RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRDDGRTPNQLRPLACSCNVLNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP+TGQIGK E+E E+ILKRTLQSICILT NPNTTTS+I+QV+HDDGALLPCAI
Sbjct: 61 SIEVIWKPKTGQIGKLERECEMILKRTLQSICILTTNPNTTTSIIVQVIHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA+CAALVDAGIP+KHLAVAI CC +E+GY ILDPTK+EE+KMK +LVFPN+ +SV+P
Sbjct: 121 NASCAALVDAGIPLKHLAVAISCCLSENGYVILDPTKIEEEKMKASVHLVFPNAPVSVVP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGS+ GEP+EHGIITSVT GAMSVDDY HCLERGRAA+ K+S FLRRSLQ +LP + S
Sbjct: 181 EGSTQGVGEPLEHGIITSVTQGAMSVDDYIHCLERGRAATTKMSAFLRRSLQPQLPMNSS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|297819162|ref|XP_002877464.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
gi|297323302|gb|EFH53723.1| hypothetical protein ARALYDRAFT_485002 [Arabidopsis lyrata subsp.
lyrata]
Length = 242
Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/242 (79%), Positives = 214/242 (88%), Gaps = 1/242 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
EVIWKP+TGQIGK EKEYE+I+KRT+QSIC+LT+NPNTTTSVIIQVVHDDG+LLPCAI
Sbjct: 61 CFEVIWKPKTGQIGKVEKEYEMIMKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIPMKHLAVAICCC A++GY +LDP KLEE+KM FAYLVFPN+ LSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLADNGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGSS+ +GEP+EHGIITSVTHG MSVDDYF C+E GRAA+A LS F R++ Q D S
Sbjct: 181 EGSSVAEGEPVEHGIITSVTHGVMSVDDYFLCVENGRAATASLSAFFRKNFQQS-QKDSS 239
Query: 241 KA 242
KA
Sbjct: 240 KA 241
>gi|15231368|ref|NP_190207.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314404|ref|NP_001030817.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314427|ref|NP_001030818.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|79314448|ref|NP_001030819.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|145332769|ref|NP_001078250.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|334185757|ref|NP_001190019.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|7799009|emb|CAB90948.1| putative protein [Arabidopsis thaliana]
gi|27808554|gb|AAO24557.1| At3g46210 [Arabidopsis thaliana]
gi|110736314|dbj|BAF00127.1| hypothetical protein [Arabidopsis thaliana]
gi|222423954|dbj|BAH19939.1| AT3G46210 [Arabidopsis thaliana]
gi|222424492|dbj|BAH20201.1| AT3G46210 [Arabidopsis thaliana]
gi|332644608|gb|AEE78129.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644609|gb|AEE78130.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644610|gb|AEE78131.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644611|gb|AEE78132.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644612|gb|AEE78133.1| exosome complex component RRP46 [Arabidopsis thaliana]
gi|332644613|gb|AEE78134.1| exosome complex component RRP46 [Arabidopsis thaliana]
Length = 239
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/232 (81%), Positives = 210/232 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
EVIWKP++GQIGK EKEYE+ILKRT+QSIC+LT+NPNTTTSVIIQVVHDDG+LLPCAI
Sbjct: 61 CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIPMKHLAVAICCC AE+GY +LDP KLEE+KM FAYLVFPN+ LSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
EGSS+ +GEP+EHGIITS+THG MSVDDYF C+E GRAA+A LS F R++ Q
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 232
>gi|224089018|ref|XP_002308603.1| predicted protein [Populus trichocarpa]
gi|222854579|gb|EEE92126.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/229 (82%), Positives = 211/229 (92%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR+P+QLRPL+CS ++LHRAHGSASWSQGDTKV AAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVSAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+EVIWKP+TGQIGK E+EYE+ILKRTLQSICILT+NPNTTTS+I+Q V+DDGALL CAI
Sbjct: 61 CVEVIWKPKTGQIGKLEREYEMILKRTLQSICILTLNPNTTTSIIVQFVNDDGALLVCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDA IPMKHLAVAICCC A+ GY ILDPTKLEEQKMKGFAYLVFPNS+LSVL
Sbjct: 121 NAACAALVDARIPMKHLAVAICCCLADVGYVILDPTKLEEQKMKGFAYLVFPNSVLSVLL 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
EGSSLV+GE EHGIITSVTHG M V++Y C+ERGRAASAKLSDFLR+
Sbjct: 181 EGSSLVEGESTEHGIITSVTHGVMPVEEYLKCVERGRAASAKLSDFLRK 229
>gi|225429944|ref|XP_002281273.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Vitis
vinifera]
Length = 245
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 219/242 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+ R DGR NQLRPLACS +IL+RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 3 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 62
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
IEV+WKP+TGQIGKPEKEYE+ILKRTL+SIC+L INPNTTTS+IIQVV DDGALLPCAI
Sbjct: 63 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 122
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDA IP+KHLAVAICCC ESGY ILDPTK+EEQKMK FAYLVFPNS +S++P
Sbjct: 123 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 182
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGSS ++GE MEHGIITSVTHG MSVDDY HCLERG+AAS K+S FLRRSLQS+ P D S
Sbjct: 183 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPNDSS 242
Query: 241 KA 242
+A
Sbjct: 243 RA 244
>gi|296081851|emb|CBI20856.3| unnamed protein product [Vitis vinifera]
Length = 243
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/242 (82%), Positives = 219/242 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+ R DGR NQLRPLACS +IL+RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIGRDDGRTANQLRPLACSRNILNRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
IEV+WKP+TGQIGKPEKEYE+ILKRTL+SIC+L INPNTTTS+IIQVV DDGALLPCAI
Sbjct: 61 CIEVVWKPKTGQIGKPEKEYEVILKRTLKSICLLNINPNTTTSIIIQVVSDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDA IP+KHLAVAICCC ESGY ILDPTK+EEQKMK FAYLVFPNS +S++P
Sbjct: 121 NAACAALVDAAIPLKHLAVAICCCLTESGYVILDPTKVEEQKMKAFAYLVFPNSAISIIP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGSS ++GE MEHGIITSVTHG MSVDDY HCLERG+AAS K+S FLRRSLQS+ P D S
Sbjct: 181 EGSSHMEGELMEHGIITSVTHGVMSVDDYLHCLERGQAASTKMSAFLRRSLQSQAPNDSS 240
Query: 241 KA 242
+A
Sbjct: 241 RA 242
>gi|356568370|ref|XP_003552384.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/242 (78%), Positives = 213/242 (88%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME DR DGR PNQLRPL CSCSILHR+HGSASW+QG+TKVLAAVYGPKAGTKK+ENPEKA
Sbjct: 1 METDRPDGRTPNQLRPLVCSCSILHRSHGSASWAQGETKVLAAVYGPKAGTKKSENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP+TGQIGK EKEYE+ILKRTL+SICI TI PNTTTSVI+QVVHDDGALLPCAI
Sbjct: 61 SIEVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIP+KHLAVAICC +SG ILDPTK EE+KMK F LVFPN+I+SVLP
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFINLVFPNTIVSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGS EPM HGI+TS+T GAMSVDDY HCLERGRAASA+LS+F+R++++ K + S
Sbjct: 181 EGSLQAGSEPMAHGIMTSITQGAMSVDDYLHCLERGRAASARLSEFVRKNIELKSTSEAS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|356532014|ref|XP_003534569.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 243
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/242 (79%), Positives = 213/242 (88%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME DR DGR PNQLRPLACSCSILHRAHGSASW+QG+TKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 METDRPDGRTPNQLRPLACSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP+TGQIGK EKEYE+ILKRTL+SICI TI PNTTTSVI+QVVHDDGALLPCAI
Sbjct: 61 SIEVIWKPKTGQIGKLEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAAC ALVDAGIP+KHLAVAICC +SG ILDPTK EE+KMK + LVFPN+I+SVLP
Sbjct: 121 NAACTALVDAGIPLKHLAVAICCSVTDSGCIILDPTKEEEEKMKAYINLVFPNTIVSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
E SS V EPM HGI+TSVT GAMSVDDY HCL+RGRAASA+LS+F+R+++ K + S
Sbjct: 181 ERSSQVGSEPMAHGIMTSVTQGAMSVDDYLHCLDRGRAASARLSEFVRKNIGPKSTCEAS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|356565547|ref|XP_003551001.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex exonuclease RRP46
homolog [Glycine max]
Length = 244
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 193/243 (79%), Positives = 214/243 (88%), Gaps = 1/243 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME DR DGR PNQLRPLA SCSILHRAHGSASW+QG+TKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 METDRPDGRTPNQLRPLAYSCSILHRAHGSASWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP+TGQIGK EKEYE+ILKRTL+SICI TI PNTTTSVI+QVVHDDGALLPCAI
Sbjct: 61 SIEVIWKPKTGQIGKMEKEYEMILKRTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIP+KHLAVAICC +SG ILDPTK EE+KMK FA LVFPN+I+SVLP
Sbjct: 121 NAACAALVDAGIPLKHLAVAICCSVTDSGCIILDPTKDEEEKMKAFANLVFPNTIVSVLP 180
Query: 181 EGSSL-VQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
E SL V EPME+GI+TSVT GAMSV+DY HCLERGRAA A LS+F+R+++ +K +
Sbjct: 181 EXRSLQVGSEPMENGIMTSVTQGAMSVNDYLHCLERGRAACASLSEFVRKNIGTKSTSEP 240
Query: 240 SKA 242
SKA
Sbjct: 241 SKA 243
>gi|388511449|gb|AFK43786.1| unknown [Lotus japonicus]
Length = 243
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/242 (76%), Positives = 210/242 (86%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DRADGR+PNQLRPLACS S+LHRAHGSASW+QG+TKV AAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRADGRSPNQLRPLACSRSVLHRAHGSASWAQGETKVFAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV WKP TGQIG+ EK YE+ILKRTL+SICI +I PNTTTSVI+QVVHDDGALLPCAI
Sbjct: 61 SIEVTWKPNTGQIGQVEKGYEMILKRTLESICIRSIYPNTTTSVIVQVVHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIP++HLAVAICC A++ ILDPTK EE+K K FAYLVFPN+ +SVLP
Sbjct: 121 NAACAALVDAGIPLRHLAVAICCSVADNSCIILDPTKQEEEKAKAFAYLVFPNTNISVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
EGSS EPM HGIITSVT GAMSVDDY CLERGRA S +LS+FLR++++ K + S
Sbjct: 181 EGSSQGGSEPMAHGIITSVTQGAMSVDDYLRCLERGRATSERLSEFLRKNIEPKSTSEAS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|357507241|ref|XP_003623909.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
gi|355498924|gb|AES80127.1| Exosome complex exonuclease RRP46 [Medicago truncatula]
Length = 243
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/242 (74%), Positives = 211/242 (87%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR+PNQLRPLACS S+LHRAHGSA+W+QG+TKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP TG +G+ ++EYE+ILK+TL+SICI TI PNTTTSVI+QVVHDDGALLPCAI
Sbjct: 61 SIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGALLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIP++HLAVAICC ++ ILDP+K EE+K K FAYLVFPN+ +SV+P
Sbjct: 121 NAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNTTVSVVP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
E SS V +PM HGIITSVTHGAMSVDDY HCLERGRA + +LS+FLR+++ K + S
Sbjct: 181 EKSSQVGNDPMAHGIITSVTHGAMSVDDYLHCLERGRATTQRLSEFLRKNIAPKSTREAS 240
Query: 241 KA 242
KA
Sbjct: 241 KA 242
>gi|124360770|gb|ABD33427.2| Peptidase S8 and S53, subtilisin, kexin, sedolisin; 3
exoribonuclease [Medicago truncatula]
Length = 241
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/242 (73%), Positives = 209/242 (86%), Gaps = 2/242 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR+PNQLRPLACS S+LHRAHGSA+W+QG+TKVLAAVYGPKAGTKKNENPEKA
Sbjct: 1 MEIDRPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEVIWKP TG +G+ ++EYE+ILK+TL+SICI TI PNTTTSVI VVHDDGALLPCAI
Sbjct: 61 SIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVI--VVHDDGALLPCAI 118
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIP++HLAVAICC ++ ILDP+K EE+K K FAYLVFPN+ +SV+P
Sbjct: 119 NAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEEEKSKAFAYLVFPNTTVSVVP 178
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
E SS V +PM HGIITSVTHGAMSVDDY HCLERGRA + +LS+FLR+++ K + S
Sbjct: 179 EKSSQVGNDPMAHGIITSVTHGAMSVDDYLHCLERGRATTQRLSEFLRKNIAPKSTREAS 238
Query: 241 KA 242
KA
Sbjct: 239 KA 240
>gi|255550900|ref|XP_002516498.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
gi|223544318|gb|EEF45839.1| Exosome complex exonuclease RRP46, putative [Ricinus communis]
Length = 211
Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/206 (84%), Positives = 190/206 (92%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M++DR DGR PNQLRPLACS ++L+RAHGSASW QGDTKVLAAVYGPK GTKKNENPEKA
Sbjct: 1 MDIDRDDGRTPNQLRPLACSRNVLNRAHGSASWCQGDTKVLAAVYGPKPGTKKNENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
IEVIWKP+TGQIGK EKEYE+ILKRTLQ+IC+LTINPNTTTSVI+QVVHDDGALL CAI
Sbjct: 61 CIEVIWKPKTGQIGKVEKEYEMILKRTLQTICVLTINPNTTTSVIVQVVHDDGALLTCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIPMKHLAVAICCC +ESGY ILDPTKLEEQKMKGF YLVFPNS+ SVL
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLSESGYVILDPTKLEEQKMKGFTYLVFPNSVHSVLQ 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSV 206
+ S LV+GEPM+HGIITSVTHG MSV
Sbjct: 181 KESVLVEGEPMDHGIITSVTHGVMSV 206
>gi|242032199|ref|XP_002463494.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
gi|241917348|gb|EER90492.1| hypothetical protein SORBIDRAFT_01g000760 [Sorghum bicolor]
Length = 239
Score = 332 bits (851), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 156/234 (66%), Positives = 193/234 (82%), Gaps = 1/234 (0%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGRNPNQLRP +C+ + LHRAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV
Sbjct: 6 RADGRNPNQLRPFSCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 65
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+WKP+TGQIG+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++QVV DDG+LLPCAINA+C
Sbjct: 66 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLLPCAINASC 125
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AAL AGIPMKHLAVAICC ++G ILD + EEQ+ K FA+LVFPNS SV +
Sbjct: 126 AALAFAGIPMKHLAVAICCGVMDNGAVILDTSTAEEQQAKSFAHLVFPNSRKSVDSK-DP 184
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
+ + E E G+I+ +THG MS D+YF+C+ERG AAS+K+SDF+R++LQ + GD
Sbjct: 185 MQKDEESERGLISCITHGTMSEDNYFNCIERGIAASSKISDFMRKTLQKEASGD 238
>gi|284793943|pdb|3HKM|A Chain A, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793944|pdb|3HKM|B Chain B, Crystal Structure Of Rice(Oryza Sativa) Rrp46
gi|284793945|pdb|3HKM|C Chain C, Crystal Structure Of Rice(Oryza Sativa) Rrp46
Length = 246
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG+LLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA CAALV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LVFPNS S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + + E E G+ITS+THG MS +DYF C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 181 KEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV 238
>gi|115456671|ref|NP_001051936.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|75243278|sp|Q84T68.2|EXOS5_ORYSJ RecName: Full=Exosome complex exonuclease RRP46 homolog; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46; Short=oRrp46
gi|57222448|gb|AAO66540.2| putative exosome component [Oryza sativa Japonica Group]
gi|108712165|gb|ABF99960.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|113550407|dbj|BAF13850.1| Os03g0854200 [Oryza sativa Japonica Group]
gi|215697262|dbj|BAG91256.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 238
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG+LLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA CAALV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LVFPNS S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + + E E G+ITS+THG MS +DYF C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 181 KEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV 238
>gi|218194134|gb|EEC76561.1| hypothetical protein OsI_14380 [Oryza sativa Indica Group]
Length = 238
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/239 (66%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG+LLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA CAALV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LVFPNS S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + + E E G+ITS+THG MS +DYF C+ERG AAS+++S F+R +LQ + PGD+
Sbjct: 181 KEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISHFMRTTLQKQAPGDV 238
>gi|226504202|ref|NP_001146469.1| uncharacterized protein LOC100280057 [Zea mays]
gi|219887423|gb|ACL54086.1| unknown [Zea mays]
gi|413932389|gb|AFW66940.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/234 (64%), Positives = 192/234 (82%), Gaps = 1/234 (0%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGRNPNQLRP C+ + LHRAHGSA W+QGDT VLAAVYGPK+GT+K ENPEKASIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+WKP+TGQIG+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++QVV DDG+L+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AAL AGIPMKHLAVAI C ++G ILD ++ EEQ+ + FA+LVFPNS SV + ++
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDTT 186
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
+ E E G+IT +THGAMS DDYF+C+ERG AS+++SDF+R++LQ + D
Sbjct: 187 Q-RDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEASRD 239
>gi|195629840|gb|ACG36561.1| exosome complex exonuclease RRP46 [Zea mays]
Length = 240
Score = 325 bits (834), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 152/234 (64%), Positives = 191/234 (81%), Gaps = 1/234 (0%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGRNPNQLRP C+ + LHRAHGSA W+QGDT VLAAVYGPK GT+K ENPEKASIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKPGTRKGENPEKASIEV 66
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+WKP+TGQIG+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++QVV DDG+L+ CAINA+C
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSLMSCAINASC 126
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AAL AGIPMKHLAVAI C ++G ILD ++ EEQ+ + FA+LVFPNS SV + +
Sbjct: 127 AALAFAGIPMKHLAVAISCGVMDNGVVILDTSRAEEQQARSFAHLVFPNSRKSVESKDPT 186
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
+ E E G+IT +THGAMS DDYF+C+ERG AS+++SDF+R++LQ ++ D
Sbjct: 187 Q-RDEESERGLITCITHGAMSEDDYFNCIERGVMASSRISDFMRKTLQKEVSRD 239
>gi|357117089|ref|XP_003560307.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Brachypodium
distachyon]
Length = 238
Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 155/236 (65%), Positives = 188/236 (79%), Gaps = 1/236 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME R DGRN NQLRP C+ + L RAHGSA WSQGDT VLAAVYGP+ GT+K ENPEKA
Sbjct: 1 MEGSRGDGRNANQLRPFTCARNPLDRAHGSARWSQGDTVVLAAVYGPRPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP+TGQ GK EK YE+ LKRTLQSIC+LT++PNTTTSVI+QV+ DDG+LLPCAI
Sbjct: 61 SIEVVWKPKTGQSGKQEKGYEMTLKRTLQSICLLTVHPNTTTSVILQVMGDDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA+CAALV AGIP+KHLAVAI C +G ILD +K EEQ++K FA+LVFPNS SV
Sbjct: 121 NASCAALVFAGIPLKHLAVAIGCGVLGNGAVILDTSKAEEQELKSFAHLVFPNSRKSVES 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 236
+ S + E E G++TS+THG MS D+YF C+ERG AAS+++SDF+R +LQ + P
Sbjct: 181 K-ESQQKDEHSERGLLTSITHGVMSEDEYFSCIERGLAASSRISDFMRTTLQKQTP 235
>gi|356554181|ref|XP_003545427.1| PREDICTED: exosome complex exonuclease RRP46 homolog [Glycine max]
Length = 237
Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 161/228 (70%), Positives = 184/228 (80%), Gaps = 7/228 (3%)
Query: 1 MEVDRADGRNPNQLRPLACSCS--ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE 58
ME DR D + PNQLRPLACSCS ILHR+HGSASW+Q +TKVLAAVYGPKAGTKKNENP+
Sbjct: 1 METDRPDSQTPNQLRPLACSCSCSILHRSHGSASWAQRETKVLAAVYGPKAGTKKNENPK 60
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
KASI+VIWKP+TGQIGK EKEYE+ILKRTL+SICI TI PNTTT VI+Q+VHDDG LLPC
Sbjct: 61 KASIKVIWKPKTGQIGKVEKEYEMILKRTLESICIRTIYPNTTTLVIVQIVHDDGVLLPC 120
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSV 178
AINAAC ALVDA IP+KHL VAICC +SG ILDPTK +E+KMK F LVFPN+I+SV
Sbjct: 121 AINAACVALVDARIPLKHLVVAICCSITDSGCIILDPTKDQEEKMKAFINLVFPNTIVSV 180
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMS-VDDYFHCLERGRAASAKLSD 225
LPEGS E M HGI+TS+T GAMS + + C RA S + +D
Sbjct: 181 LPEGSLQEGSETMAHGIMTSITQGAMSGLGGFVAC----RALSQRNTD 224
>gi|257062723|gb|ACV40374.1| ribosomal RNA-processing protein 46 [Hordeum vulgare subsp.
vulgare]
Length = 240
Score = 309 bits (792), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/225 (66%), Positives = 182/225 (80%), Gaps = 1/225 (0%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
NQLR +C+ + L RAHGSA W+QGDT VLAAVYGP+ GT+K ENPEKAS+EV+WKP+TG
Sbjct: 14 NQLRAYSCTRNPLERAHGSARWAQGDTVVLAAVYGPRPGTRKGENPEKASLEVVWKPKTG 73
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
QIG+ EKEYE+ LKRTLQSIC+LT++PNTTTS+I+QV+ DDG+LLPCAINA+CAALV AG
Sbjct: 74 QIGRQEKEYEMTLKRTLQSICLLTVHPNTTTSIILQVMGDDGSLLPCAINASCAALVFAG 133
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
IPMKHLAVAI C G ILD +K EEQ++K FA+LVFPNS LSV + G+
Sbjct: 134 IPMKHLAVAIGCGVLPDGSVILDTSKAEEQQLKSFAHLVFPNSSLSVDVKEPQQKDGQS- 192
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 236
E G+ITS+THG MS DDYF+C+ERG AASA++SDF+R +LQ P
Sbjct: 193 ERGLITSITHGVMSEDDYFNCIERGLAASARISDFMRTTLQKHTP 237
>gi|222626193|gb|EEE60325.1| hypothetical protein OsJ_13416 [Oryza sativa Japonica Group]
Length = 248
Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 153/249 (61%), Positives = 188/249 (75%), Gaps = 11/249 (4%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC-- 118
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG++ C
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSVSFCRN 120
Query: 119 ---AINAACA-----ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
+I + C +LV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LV
Sbjct: 121 VLLSIVSGCLLDYEHSLVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLV 180
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
FPNS S + + + E E G+ITS+THG MS +DYF C+ERG AAS+++SDF+R +
Sbjct: 181 FPNSRKSASSKEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTT 239
Query: 231 LQSKLPGDL 239
LQ + PGD+
Sbjct: 240 LQKQAPGDV 248
>gi|168045848|ref|XP_001775388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673333|gb|EDQ59858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/235 (54%), Positives = 172/235 (73%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
+RADGR+ +QLRPL+ S +L RAHGSA+WSQ +T VLAAVYGPK K EN E+A IE
Sbjct: 18 ERADGRSASQLRPLSLSRGLLTRAHGSATWSQENTTVLAAVYGPKPAAMKKENAERAIIE 77
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
V+W+ ++G G EK+ E++++R+L+ I + ++PNT SVI+QV++DDG+LL CA+NAA
Sbjct: 78 VVWRAKSGLSGSYEKDAEVVVRRSLEYIILTALHPNTAISVILQVINDDGSLLACAMNAA 137
Query: 124 CAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
CAALVDAGIP+ L A+ C G LDPTK EEQK K + VFP+ LS +PE
Sbjct: 138 CAALVDAGIPLNGLLSAVSCGVTHDGQVFLDPTKPEEQKCKAYVSFVFPSRRLSAVPELP 197
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
+ V GEP+E+GI+TSVT GAM V++YF C+E RAA+AK+S+F R S++ L G+
Sbjct: 198 ADVDGEPVEYGILTSVTRGAMEVEEYFSCVENCRAAAAKVSEFSRSSIEQSLKGN 252
>gi|413932390|gb|AFW66941.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
gi|413932391|gb|AFW66942.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 122
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 101/111 (90%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGRNPNQLRP C+ + LHRAHGSA W+QGDT VLAAVYGPK+GT+K ENPEKASIEV
Sbjct: 7 RADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIEV 66
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+WKP+TGQIG+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++QVV DDG++
Sbjct: 67 VWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVVGDDGSV 117
>gi|224031563|gb|ACN34857.1| unknown [Zea mays]
gi|413932392|gb|AFW66943.1| hypothetical protein ZEAMMB73_899121 [Zea mays]
Length = 149
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/106 (75%), Positives = 96/106 (90%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
RADGRNPNQLRP C+ + LHRAHGSA W+QGDT VLAAVYGPK+GT+K ENPEKASIE
Sbjct: 6 SRADGRNPNQLRPFTCTGNPLHRAHGSARWAQGDTVVLAAVYGPKSGTRKGENPEKASIE 65
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V+WKP+TGQIG+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++QV+
Sbjct: 66 VVWKPKTGQIGRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQVM 111
>gi|320165922|gb|EFW42821.1| exosome component Rrp46 [Capsaspora owczarzaki ATCC 30864]
Length = 227
Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 132/239 (55%), Gaps = 23/239 (9%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
V RADGR PNQLR L+ ++L RA GS+ +SQ DT L AVYGP E +KA++
Sbjct: 2 VTRADGRMPNQLRELSIEHAVLSRADGSSRFSQRDTSALTAVYGPAEVKSSKELLDKATV 61
Query: 63 EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 122
+ +++P+TG G + E IL++ L+ + T NP T+ +VI+QV+HDDGALL CA+N+
Sbjct: 62 QTVFRPKTGLAGVDDHVCEAILRQALEPVIQRTANPRTSITVIVQVMHDDGALLACALNS 121
Query: 123 ACAALVDAGIPMKHLAVAICCC------SAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
A AL+DAG+PM + A+ C + +LDPT E+ A F
Sbjct: 122 ASMALIDAGVPMSAVLAAVTCAWLPAADGSSERRLLLDPTLEEQTAATSIATFAF----- 176
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
E I+ S T G ++VD+YF+ +E + A+A + F+R SL+ K
Sbjct: 177 ------------ESTNQEIVFSSTEGQLTVDEYFYTIEMAQKAAANVLAFMRLSLERKF 223
>gi|297825843|ref|XP_002880804.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297326643|gb|EFH57063.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 140
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/90 (78%), Positives = 81/90 (90%)
Query: 26 RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILK 85
R+ G + +GDTKVLAAVYGPKAGTKKNEN EKA EVIWKP+TGQIGK EKEYE+ILK
Sbjct: 20 RSTGDRRYEKGDTKVLAAVYGPKAGTKKNENDEKACFEVIWKPKTGQIGKVEKEYEMILK 79
Query: 86 RTLQSICILTINPNTTTSVIIQVVHDDGAL 115
RT+QSIC+LT+NPNTTTSVIIQVVHDDG++
Sbjct: 80 RTMQSICVLTVNPNTTTSVIIQVVHDDGSI 109
>gi|291226757|ref|XP_002733360.1| PREDICTED: exosome component 5-like, partial [Saccoglossus
kowalevskii]
Length = 198
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 124/214 (57%), Gaps = 18/214 (8%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M RAD N +LR +C ++L R GSA++ QGDT V+ AVYGP + E +KA
Sbjct: 1 MTSQRADCGNL-ELRSQSCEQNLLSRPDGSATYCQGDTSVIVAVYGPAEVKQSKEFLDKA 59
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
++EVI+KP+ G G EK E +++ T ++I + ++P ++ ++IIQV+H+ G+LL C +
Sbjct: 60 TLEVIFKPKVGIPGCSEKFQERLIRNTCETIVLTALHPRSSINIIIQVMHNAGSLLSCCV 119
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
N+ C AL+DAG+PM L A+ C + G ILDPT +E++ K VF
Sbjct: 120 NSTCMALLDAGLPMSCLVAAVTCSLSCDGDIILDPTSQQEKEAKAILTFVF--------- 170
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 214
E ++ IITS THG S+ Y+ C+E
Sbjct: 171 --------ESRDNEIITSNTHGIYSIKQYYSCVE 196
>gi|260791023|ref|XP_002590540.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
gi|229275734|gb|EEN46551.1| hypothetical protein BRAFLDRAFT_124523 [Branchiostoma floridae]
Length = 219
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 123/226 (54%), Gaps = 17/226 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR C ++L R GSAS QGDT VLAAVYGP E +KA+++VI+KP+ G
Sbjct: 11 LRSFECEQNLLSRPDGSASVRQGDTSVLAAVYGPGEVKMSEEIIDKATLKVIFKPKIGLP 70
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +L+ T +S+ + ++P + ++++QV+ D G+LL C INAAC ALVD+ +P
Sbjct: 71 GCAEKLQERLLRNTCESVVLAILHPRSGVNIVLQVIQDSGSLLSCCINAACMALVDSAVP 130
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
MK L A+ C E G +LDP +E++ F + E+
Sbjct: 131 MKCLVSAVTCAVMEEGRIVLDPDSKQEKESSAVLTFAF-----------------DSREN 173
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++T T G + + Y CL AAS +S F R++++ ++ +L
Sbjct: 174 NVVTCSTKGCYTPEKYQECLSACGAASKNISSFFRQAVERRMSKEL 219
>gi|156389595|ref|XP_001635076.1| predicted protein [Nematostella vectensis]
gi|156222166|gb|EDO43013.1| predicted protein [Nematostella vectensis]
Length = 232
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/223 (34%), Positives = 124/223 (55%), Gaps = 17/223 (7%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C +L +A GS+ ++QGDT+V+AA YGP E ++A++EVI++P+ G
Sbjct: 14 ELRAMFCEHGLLDKADGSSKFAQGDTQVMAAAYGPVEVKLNKELIDRATLEVIFRPKIGI 73
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
G EK E I++ + + I + ++P + ++++QVV + G+LL CA+NAAC A++DAG
Sbjct: 74 PGCSEKLVEGIIRNSCEPIVLTALHPRASLTIVVQVVQNSGSLLSCAVNAACLAMMDAGF 133
Query: 133 PMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 192
PM+ + I C E +LDPT +E+K VF + +
Sbjct: 134 PMRCMMCGITCAITEQDELVLDPTLEQERKATAVLTFVF-----------------DSVN 176
Query: 193 HGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
++TS T G+ VD Y CL +AA + F R+S++ KL
Sbjct: 177 QNLLTSSTKGSFDVDQYNKCLAASKAAMGNILAFYRQSVERKL 219
>gi|426242933|ref|XP_004015323.1| PREDICTED: exosome complex component RRP46 [Ovis aries]
Length = 235
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+TG G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKTGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 186 -DSVERKLLMSTTKGLYSDAELQQCLAAAQTASTHVFRFYRESLQRR 231
>gi|444518498|gb|ELV12200.1| Exosome complex component RRP46 [Tupaia chinensis]
Length = 235
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NA C AL
Sbjct: 82 PKIGLPGVAEKTRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNATCMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMQALFCGVTCTLDSDGALVLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S ++ CL +AAS + F R SLQ +
Sbjct: 186 -DSVERKLLMSTTKGLYSNAEFHQCLAAAQAASQHVFRFYRESLQRR 231
>gi|66809981|ref|XP_638714.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
gi|60467336|gb|EAL65367.1| hypothetical protein DDB_G0284053 [Dictyostelium discoideum AX4]
Length = 237
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 126/234 (53%), Gaps = 18/234 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR N +RP+ L++A GSA +SQ +KVLAAVYGP + + + E K+ +E
Sbjct: 7 RNDGRCENSIRPVESEQGSLNKADGSAKFSQDKSKVLAAVYGPIEVNSARKEKILKSYVE 66
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
V + P G +KE E+++K ++S+ + T+ P T SVI+QV DDG+++ CAINAA
Sbjct: 67 VTFTPAFGNTNYIDKEKELLIKNAVESMILTTLYPRTQISVILQVFSDDGSIVSCAINAA 126
Query: 124 CAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
C AL+DAGI M L ++ C G +DP+ EE + K A F
Sbjct: 127 CLALLDAGIEMNGLLGSVTLCFNNDGSIYVDPSTEEENQSKAIAIYSFS----------- 175
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 237
+ I+ S T G ++ D YF L++ + + F++ ++++++ G
Sbjct: 176 ------SINKNIVLSKTIGTLTEDQYFKGLDKASESCDLIISFIKLAVKNRIMG 223
>gi|347582673|ref|NP_001231590.1| exosome component 5 [Sus scrofa]
Length = 235
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 125/227 (55%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R+P+ LR AC ++L R GSAS+ QGDT VLA VYGP + E KA++EVI +
Sbjct: 22 RSPSCTLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVRKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QV+ D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTFMLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 186 -DSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRR 231
>gi|126329382|ref|XP_001372178.1| PREDICTED: exosome complex component RRP46-like [Monodelphis
domestica]
Length = 237
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 82/221 (37%), Positives = 121/221 (54%), Gaps = 17/221 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VL VYGP E KA++EVI KP+ G
Sbjct: 30 LRHFACEQNLLSRPDGSASFLQGDTSVLVGVYGPAEVKVSKEIFNKATLEVILKPKIGLP 89
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + T++P T+ +V++Q+V D G+LL C +NAAC ALVDAG+P
Sbjct: 90 GVAEKSRERLIRTTCEAVVLGTLHPRTSITVVLQIVSDAGSLLACCLNAACLALVDAGVP 149
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
++ L + C G +LDPT +E++ + A L F + E
Sbjct: 150 LRALFCGVTCALDLDGGLVLDPTAKQEKEAR--AILTFAL---------------DSTEQ 192
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ S T G SV ++ CL + AS + F R SLQ +
Sbjct: 193 KLLMSTTKGLYSVAEFQQCLAAAQHASLHIFRFYRDSLQRR 233
>gi|330791335|ref|XP_003283749.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
gi|325086372|gb|EGC39763.1| hypothetical protein DICPUDRAFT_85962 [Dictyostelium purpureum]
Length = 233
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 131/243 (53%), Gaps = 25/243 (10%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKA 60
E R +GR QLR + S+L++A GSA +SQ T VLAAVYGP + + + E K+
Sbjct: 6 EFRRLNGRTQGQLRSMESEQSLLNKADGSAKFSQNKTSVLAAVYGPIEVNSARKEKILKS 65
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+EV + P G +KE E+++K ++S+ + T++P T SVIIQV DDG+++ C+I
Sbjct: 66 YVEVTFTPALGNTTYLDKEKELLVKNAVESVILTTLHPRTQVSVIIQVYSDDGSIVSCSI 125
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESG------YCILDPTKLEEQKMKGFAYLVFPNS 174
NAAC AL+DAGI M L +I + + I+DP EE K A F ++
Sbjct: 126 NAACLALLDAGIEMNGLIGSITLMNEDDDEDNNKCLMIVDPDLNEENNSKAMAIFAFSSN 185
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ I+ S T G ++ D YF CL+ R + ++ +++ +++++
Sbjct: 186 -----------------SNNIVMSKTIGTLTEDQYFECLKAARGCDSIIA-YMKLAVKNR 227
Query: 235 LPG 237
+ G
Sbjct: 228 IMG 230
>gi|348543409|ref|XP_003459176.1| PREDICTED: exosome complex component RRP46-like [Oreochromis
niloticus]
Length = 219
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 122/226 (53%), Gaps = 17/226 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR C S+L R GSAS+ QGDT V+A VYGP E ++A++EV+ +P+ G
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGLP 70
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T ++ +LT++P ++ ++I+QV+HDDG+LL C +NAAC AL+DAG+P
Sbjct: 71 SVRERSQEQCVRETCEASLLLTLHPRSSLTLILQVLHDDGSLLSCCLNAACMALMDAGLP 130
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M L + C + G I DPT +E++ + ++ +H
Sbjct: 131 MSCLFCGVTCAISTDGQIITDPTAAQEKESRALMTFAIDSA-----------------KH 173
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++ S T G+ SV + C+ + AS K+ F R S++ + L
Sbjct: 174 SVLMSSTKGSFSVHELQQCIAVSQKASEKIFQFYRDSVKRRYSKSL 219
>gi|348552426|ref|XP_003462029.1| PREDICTED: exosome complex component RRP46-like [Cavia porcellus]
Length = 240
Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 17/221 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSA++ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 33 LRHFACEQNLLSRPDGSATFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 92
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QV+ D G+LL C +N AC ALVDAGIP
Sbjct: 93 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNVACMALVDAGIP 152
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M+ L + C G +LDPT +E++ + A L F + ++
Sbjct: 153 MRALFCGVTCALDSDGTLVLDPTAKQEKEAR--AVLTFAL---------------DSVDR 195
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ S T G S + CL + AS + F R SLQ +
Sbjct: 196 KLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRR 236
>gi|281200843|gb|EFA75059.1| hypothetical protein PPL_11677 [Polysphondylium pallidum PN500]
Length = 233
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 18/234 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R D RN NQ+R + ++L++A GSA +S ++ VLAA+YGP + E KA++EV
Sbjct: 3 RIDKRNNNQIRSIESELALLNKADGSAKFSLDNSSVLAAIYGPVEVNPRKEKISKATVEV 62
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
++ P +G KE E +++ ++S+ + ++P T S+IIQV DG+++ C+INAAC
Sbjct: 63 VFTPDSGNQNYQTKEQESLIRNAIESVIMTMLHPRTLISIIIQVYSTDGSIVSCSINAAC 122
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AL+DAGI + L +I G LDPT EE + K A F NS L ++ SS
Sbjct: 123 LALLDAGIELNSLIASISLSFNSDGQIYLDPTMKEENESKATAIYAF-NSQLKLMMIKSS 181
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
GIIT + L+ R++ ++ ++R ++++++ GD
Sbjct: 182 ---------GIITEQQNQ--------EALQLARSSCERILAYIRTAVKTRIMGD 218
>gi|221119375|ref|XP_002161086.1| PREDICTED: exosome complex component RRP46-like [Hydra
magnipapillata]
Length = 221
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+R + C+ + L + GS + S G TKV++AVYGP E +KA+I I KP+ G
Sbjct: 1 MREMECNLAYLEKPDGSVTLSHGQTKVISAVYGPVEVKMNKEITDKATIICILKPKIGMS 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
EK E I+ +T + I +++P + V++Q+VHD G+LL C INAAC +LV AG+P
Sbjct: 61 AVKEKVMEKIVAKTCEQAIIASLHPRSAIQVVLQIVHDSGSLLSCLINAACLSLVHAGLP 120
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M+++ V++CC + ++DPT E Q K F E
Sbjct: 121 MRNMIVSVCCAVTNNDEYLVDPTIAEIQDCKCVLTFAF-----------------ESKNL 163
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
I++ T G +V+ YF CL+ +A++ + +F R+S+
Sbjct: 164 DIVSIFTSGLFTVEQYFQCLQLAKASAPDILNFQRQSV 201
>gi|291412161|ref|XP_002722356.1| PREDICTED: exosome component 5-like [Oryctolagus cuniculus]
Length = 235
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/224 (36%), Positives = 120/224 (53%), Gaps = 18/224 (8%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++Q+V D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKNRERMIRNTCEAVVLGALHPRTSITVVLQIVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLVLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
+ ++ ++ S T G S + CL + AS + F R SL
Sbjct: 186 -DSVDRKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRDSL 228
>gi|194675249|ref|XP_001790575.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|297485653|ref|XP_002695041.1| PREDICTED: exosome complex component RRP46 [Bos taurus]
gi|296477725|tpg|DAA19840.1| TPA: exosome component 5-like [Bos taurus]
Length = 242
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 83/228 (36%), Positives = 121/228 (53%), Gaps = 24/228 (10%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+TG
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA-------LLPCAINAACAA 126
G EK E +++ T +++ + ++P T+ +V++QVV D G+ LL C +NAAC A
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSKLNHCLWLLACCLNAACMA 147
Query: 127 LVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 186
LVDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 148 LVDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEAR--AVLTFAL------------- 192
Query: 187 QGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 193 --DSVERKLLMSTTKGLYSDTELQQCLAAAQTASTHVFRFYRESLQRR 238
>gi|391224436|ref|NP_001038817.2| exosome complex exonuclease RRP46 [Danio rerio]
Length = 230
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 121/221 (54%), Gaps = 17/221 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR S+L R GS+++ QGDT +LA VYGP E ++A++EV+ +P+ G
Sbjct: 22 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 81
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T ++ +LT++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+P
Sbjct: 82 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 141
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M L ++ C ++ G I DPT +E++ + ++ E
Sbjct: 142 MSRLFCSVTCAISKEGQIITDPTARQEKESRALLTFAIDSN-----------------ER 184
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ S T G+ SV + C+ + AS ++ F R S++ +
Sbjct: 185 NVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRR 225
>gi|413942153|gb|AFW74802.1| hypothetical protein ZEAMMB73_831356 [Zea mays]
Length = 421
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 83/131 (63%), Gaps = 28/131 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADG+NPNQLR C+ ++LHRAHG A W+QG VLA VYGPK GT + PEKASIE
Sbjct: 7 RADGQNPNQLRLFTCTGNLLHRAHGCARWAQGGIVVLATVYGPKPGTVRGRTPEKASIEA 66
Query: 65 IWKPRTGQI----------------------------GKPEKEYEIILKRTLQSICILTI 96
+WKPRTGQI G+ ++EYE+ LKRTLQSIC+LT+
Sbjct: 67 VWKPRTGQIDTPLFPSSSFCPTAVRVTGSLKWRVVFVGRQDREYEMTLKRTLQSICLLTV 126
Query: 97 NPNTTTSVIIQ 107
+ N TTSV++Q
Sbjct: 127 HANATTSVVLQ 137
>gi|410910298|ref|XP_003968627.1| PREDICTED: exosome complex component RRP46-like [Takifugu rubripes]
Length = 219
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 125/226 (55%), Gaps = 17/226 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR +C S+L R GS+S+ QGDT VLA VYGP E ++A++EV+ +P+ G
Sbjct: 11 LRDFSCEQSLLSRPDGSSSFMQGDTSVLAGVYGPAEVKVSKEIYDRATLEVLIQPKVGLP 70
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T ++ +L+++P ++ ++++QV+HDDG+LL C +NAAC AL+DAG+P
Sbjct: 71 SVKERSQEQNVRETCEASLLLSLHPRSSLTLVLQVLHDDGSLLSCFLNAACMALMDAGLP 130
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M L + C A G I DPT +E++ + A L F + +
Sbjct: 131 MSCLFCGVTCAIAVDGEIITDPTAAQEKECR--ALLTFAI---------------DSKKC 173
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++ S T G+ SV + C+ + AS K+ F R S+Q + +L
Sbjct: 174 RVMMSSTKGSFSVQELQQCIAISQKASEKIFQFYRDSVQRRYSKNL 219
>gi|405978848|gb|EKC43209.1| Exosome complex exonuclease RRP46 [Crassostrea gigas]
Length = 215
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 121/224 (54%), Gaps = 17/224 (7%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR L+ + L R G A+ SQGDT V +AVYGP E +KA+I+V++KP++G
Sbjct: 6 SKLRQLSSTLGDLSRPDGDATVSQGDTCVTSAVYGPGEVKVTKELLDKATIDVVYKPKSG 65
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
G EK E ++ + +++ + ++P ++ S+ +Q + + G+LL C IN+ C AL+D+G
Sbjct: 66 LPGCAEKLLERTIRNSCETVILGNLHPRSSISITVQEIQNRGSLLSCCINSTCMALLDSG 125
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+ M++L A+ C ++G I+DP L+EQ VF N
Sbjct: 126 VSMRYLMAAVSCAINDNGSIIMDPNTLQEQSTVAMLTFVFENC----------------- 168
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+G+IT G ++D + CL + R AS + F + S+ KL
Sbjct: 169 NYGVITVSAKGCYTLDQFQQCLSKCRDASKYVFQFFKDSISKKL 212
>gi|328875787|gb|EGG24151.1| hypothetical protein DFA_06297 [Dictyostelium fasciculatum]
Length = 329
Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 129/240 (53%), Gaps = 19/240 (7%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKAS 61
+ R D R NQ+RP+ ++L++A GSA +SQG + VLAAVYGP T + E K+
Sbjct: 83 IKRDDTRLSNQIRPIESEQALLNKADGSAKFSQGKSSVLAAVYGPIDVKTARKEKISKSV 142
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
++V + P TG +KE E++++ ++SI + ++P T +VI+QV +DG+++ CAIN
Sbjct: 143 VDVSFTPATGNTTYFDKEREMLVRNAVESIILTLLHPRTQINVIVQVYSNDGSIISCAIN 202
Query: 122 AACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
A C AL+DAGI + L +I LDPT+ EE KG A NS
Sbjct: 203 ACCLALLDAGIELNCLISSITLSFTHDNQIYLDPTQKEENNSKGLAVYAI-NS------- 254
Query: 182 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 241
+ I+ + T G + YF L + + K+S + R ++++++ GD ++
Sbjct: 255 ----------KSEIVMTKTTGIIGESLYFQGLNIAKQSCEKVSAYTRLAVRNRIMGDQTQ 304
>gi|112419436|gb|AAI22388.1| Exosome component 5 [Danio rerio]
gi|182891334|gb|AAI64315.1| Exosc5 protein [Danio rerio]
Length = 218
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 120/221 (54%), Gaps = 17/221 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR S+L R GS+++ QGDT +LA VYGP E ++A++EV+ +P+ G
Sbjct: 10 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 69
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T ++ +LT++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+P
Sbjct: 70 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 129
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M L ++ C ++ G I DPT +E+ + ++ E
Sbjct: 130 MSRLFCSVTCAISKEGQIITDPTARQEKVSRALLTFAIDSN-----------------ER 172
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ S T G+ SV + C+ + AS ++ F R S++ +
Sbjct: 173 NVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRR 213
>gi|298710388|emb|CBJ25452.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 230
Score = 136 bits (342), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 136/239 (56%), Gaps = 21/239 (8%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEK 59
ME R DGR NQ+RPLA IL+RA GSA + QG+T VLAAVYGP A + + E E
Sbjct: 1 MEETRRDGRRANQIRPLAAEQGILNRADGSARFVQGNTSVLAAVYGPAPAKSLRMERSEG 60
Query: 60 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
A+++V +KP +G + E E +L+R+L+ + + + P T SVIIQV+ DDGA+L A
Sbjct: 61 ATLDVSFKPESGITSSADAESEALLRRSLEEVVLRSRYPRTVVSVIIQVIVDDGAVLSAA 120
Query: 120 INAACAALVDAGIPMKHLAVAICCC--SAESGYCI-LDPTKLEEQKMKGFAYLVFPNSIL 176
+NAA AL++AG+ M +A+++ CC + SG + LDP K EE +++
Sbjct: 121 LNAATMALLNAGVEMTGMALSVTCCITATVSGRSVLLDPCKAEEIDAA-------ATAVV 173
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ L G G+++ G+MS ++YF C E + + F+R S + K+
Sbjct: 174 ATLSAGG----------GVLSCHAVGSMSQEEYFACCEAASLGTTAVRSFVRLSAEQKV 222
>gi|355686801|gb|AER98191.1| exosome component 5 [Mustela putorius furo]
Length = 236
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 84/227 (37%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P+ LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 24 RGPSCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 83
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 84 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 143
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + L
Sbjct: 144 VDAGVPMRALFCGVTCALNADGTLVLDPTAKQEKEARAVLTLAL---------------- 187
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 188 -DSVERKLLMSTTKGLYSDAELQQCLAAAQAASQHVFRFYRESLQRR 233
>gi|73947485|ref|XP_852838.1| PREDICTED: exosome complex component RRP46 [Canis lupus familiaris]
Length = 235
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 124/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALNSDGTLVLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 186 -DSVERKLLMSTTKGLYSAAELQQCLAAAQAASQHVFRFYRESLQRR 231
>gi|426388821|ref|XP_004060830.1| PREDICTED: exosome complex component RRP46 [Gorilla gorilla
gorilla]
Length = 235
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L I C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGITCALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|290992775|ref|XP_002679009.1| predicted protein [Naegleria gruberi]
gi|284092624|gb|EFC46265.1| predicted protein [Naegleria gruberi]
Length = 280
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 79/257 (30%), Positives = 134/257 (52%), Gaps = 34/257 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R + NQLR + +L +A GS +SQG+T V+ +V GP++ K E ++A I+V
Sbjct: 8 RDQRKTSNQLRDMQVELGVLGKADGSVKFSQGNTTVICSVCGPESSMK--EKGDQAIIDV 65
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+++PR + + EKEYE+I+++TL+++ + I P T ++ IQVV DG LL ++NAA
Sbjct: 66 MFQPRDKKASEEEKEYELIIRQTLENVILTNIYPRTVITISIQVVQYDGCLLSASLNAAS 125
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM--------------------- 163
AL+DAG+ MK V+ C SG C+LDPT++E+
Sbjct: 126 LALLDAGVAMKTTLVSSSCSYLNSGDCLLDPTRIEQDFSSILHNDDSSSYIQYYKTSSKG 185
Query: 164 ------KGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 217
KGFA+ VF ++ L + S + ++TS+T G ++ + C+ +
Sbjct: 186 PKVIVPKGFAFFVFDSAPLRNPSKTDS-----DDDSFLVTSITEGLLTDEALRECISLAK 240
Query: 218 AASAKLSDFLRRSLQSK 234
+ + +R +L+ K
Sbjct: 241 EGALSVYSLIRLTLERK 257
>gi|14043511|gb|AAH07742.1| Exosome component 5 [Homo sapiens]
gi|78394993|gb|AAI07697.1| Exosome component 5 [Homo sapiens]
gi|119577442|gb|EAW57038.1| exosome component 5 [Homo sapiens]
gi|325463845|gb|ADZ15693.1| exosome component 5 [synthetic construct]
Length = 235
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|47174864|ref|NP_064543.3| exosome complex component RRP46 [Homo sapiens]
gi|14285757|sp|Q9NQT4.1|EXOS5_HUMAN RecName: Full=Exosome complex component RRP46; AltName:
Full=Chronic myelogenous leukemia tumor antigen 28;
AltName: Full=Exosome component 5; AltName:
Full=Ribosomal RNA-processing protein 46; AltName:
Full=p12B
gi|8927592|gb|AAF82135.1|AF281134_1 exosome component Rrp46 [Homo sapiens]
gi|208966242|dbj|BAG73135.1| exosome component 5 [synthetic construct]
Length = 235
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|122920910|pdb|2NN6|D Chain D, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 237
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 24 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 83
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 84 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 143
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 144 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 185
>gi|114677471|ref|XP_001152170.1| PREDICTED: exosome complex component RRP46 isoform 2 [Pan
troglodytes]
gi|397482601|ref|XP_003812509.1| PREDICTED: exosome complex component RRP46 [Pan paniscus]
gi|410210198|gb|JAA02318.1| exosome component 5 [Pan troglodytes]
gi|410248686|gb|JAA12310.1| exosome component 5 [Pan troglodytes]
gi|410287660|gb|JAA22430.1| exosome component 5 [Pan troglodytes]
Length = 235
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|402905661|ref|XP_003915633.1| PREDICTED: exosome complex component RRP46 [Papio anubis]
Length = 260
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 47 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 106
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 107 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 166
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 167 VDAGVPMRALFCGVTCALDSDGTLVLDPTSKQEKEAR--AVLTF 208
>gi|297277133|ref|XP_001102687.2| PREDICTED: exosome complex exonuclease RRP46 [Macaca mulatta]
Length = 277
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 64 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 123
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 124 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 183
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 184 VDAGVPMRALFCGVTCALDSDGTLVLDPTSKQEKEAR--AVLTF 225
>gi|380814818|gb|AFE79283.1| exosome complex component RRP46 [Macaca mulatta]
gi|383414573|gb|AFH30500.1| exosome complex component RRP46 [Macaca mulatta]
Length = 235
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|350538705|ref|NP_001232110.1| putative exosome component 5 [Taeniopygia guttata]
gi|197127157|gb|ACH43655.1| putative exosome component 5 [Taeniopygia guttata]
Length = 224
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 126/228 (55%), Gaps = 19/228 (8%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW 66
DGR +LR +C +L R GSA++ QGDT VLA +YGP E P++A+++V+
Sbjct: 12 DGRC--RLRRFSCELGLLSRPDGSAAFLQGDTSVLAGLYGPAEAKISKELPDRAALDVLL 69
Query: 67 KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 126
+P+ G G E+ E +L++T +++ + ++P T S+++QV+ D G+LL C +NAAC A
Sbjct: 70 RPKVGLPGVLERSREQLLQQTCEAVVLGVLHPRTAISLVLQVLSDAGSLLSCCLNAACMA 129
Query: 127 LVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 186
L+DAG+P+ L + C G +LDPT +EQ+ + A L F +I S
Sbjct: 130 LLDAGLPLSALFCGVTCALQPDGAILLDPTARQEQEAR--AVLTF--AIASA-------- 177
Query: 187 QGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ ++ T G+ SV + CL + A+ + F R S++ +
Sbjct: 178 -----DRKVLMVTTKGSCSVQEMQQCLAAAQRAADTIFQFYRDSVRRR 220
>gi|21693160|gb|AAM75154.1| chronic myelogenous leukemia tumor antigen 28 [Homo sapiens]
Length = 268
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 114
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 115 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 174
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 175 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 216
>gi|301776621|ref|XP_002923728.1| PREDICTED: exosome complex exonuclease RRP46-like [Ailuropoda
melanoleuca]
Length = 239
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 122/221 (55%), Gaps = 17/221 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 32 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 91
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + T++P T+ +V++QV+ D G+LL C +NAAC ALVDAG+P
Sbjct: 92 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVP 151
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M+ L + C G +LDPT +E++ + A L F + +E
Sbjct: 152 MRALFCGVTCALNSDGTLVLDPTAKQEKEAR--AVLTFAL---------------DSVER 194
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ S T G S + CL +AAS + F R SLQ +
Sbjct: 195 KLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRR 235
>gi|189067465|dbj|BAG37447.1| unnamed protein product [Homo sapiens]
Length = 235
Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 85/227 (37%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPNQ-LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P + LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGRSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V+ QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVPQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + L +AAS + F R SLQ +
Sbjct: 186 -DSVERKLLMSSTKGLYSDTELQQYLAAAQAASRHVFRFYRESLQRR 231
>gi|413945995|gb|AFW78644.1| hypothetical protein ZEAMMB73_813724 [Zea mays]
Length = 548
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/131 (50%), Positives = 82/131 (62%), Gaps = 28/131 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADG+NPNQLR C ++LHRAHG W+QG +L+AVYGPK GT + PEKASIE
Sbjct: 6 RADGQNPNQLRLFTCIGNLLHRAHGCTRWAQGGIVMLSAVYGPKPGTVRGRTPEKASIEA 65
Query: 65 IWKPRTGQI----------------------------GKPEKEYEIILKRTLQSICILTI 96
+WKPRTGQI G+ E+EYE+ LKR LQSIC+LT+
Sbjct: 66 VWKPRTGQIDTPLFPSSSFCPTAVRVIGSLKWRVVFAGRQEREYEMTLKRMLQSICLLTV 125
Query: 97 NPNTTTSVIIQ 107
+ NTTTSV++Q
Sbjct: 126 HANTTTSVVLQ 136
>gi|363746058|ref|XP_003643513.1| PREDICTED: exosome complex component RRP46-like, partial [Gallus
gallus]
Length = 173
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP +C +L R GSA++ QGDT VLA +YGP E+P+ A++EV+ +P+ G
Sbjct: 12 LRPFSCEQGLLSRPDGSATFVQGDTSVLAGLYGPAEVKGSRESPDGATVEVLLRPKVGLP 71
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G E+ E +L+RT +++ + +++P T+ +V++QV+ D G+LL C +NAAC L+DAG+P
Sbjct: 72 GVAERSREQLLRRTFEAVLLGSLHPRTSITVVLQVLSDAGSLLACCLNAACMGLLDAGLP 131
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
+ L + C G ILDPT +EQ+ A L F
Sbjct: 132 LSSLFCGVTCALDPHGDIILDPTARQEQEAH--AVLTF 167
>gi|149722162|ref|XP_001500390.1| PREDICTED: exosome complex component RRP46-like [Equus caballus]
Length = 235
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QV+ D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLMLDPTAKQEKEAR--AVLTF 183
>gi|281340717|gb|EFB16301.1| hypothetical protein PANDA_012923 [Ailuropoda melanoleuca]
Length = 206
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + T++P T+ +V++QV+ D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALNSDGTLVLDPTAKQEKEAR--AVLTF 183
>gi|395859609|ref|XP_003802126.1| PREDICTED: exosome complex component RRP46 [Otolemur garnettii]
Length = 235
Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFMQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLVLDPTAKQEKEAR--AVLTF 183
>gi|297847232|ref|XP_002891497.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
gi|297337339|gb|EFH67756.1| hypothetical protein ARALYDRAFT_891796 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 60/83 (72%), Positives = 69/83 (83%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
+E+DR DGR P+QLRPLACS +ILHR HGSASWSQGDTKVLAAVYGPK GT+KNENPEKA
Sbjct: 24 IEIDREDGRTPDQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKPGTRKNENPEKA 83
Query: 61 SIEVIWKPRTGQIGKPEKEYEII 83
EVIWKP++GQI P ++
Sbjct: 84 CFEVIWKPKSGQIVFPNTTLSVL 106
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
+VFPN+ LSVLPEGSSLV+GEP+E GII VTHG MSVDDYF C+E GRAA+A LS F R
Sbjct: 96 IVFPNTTLSVLPEGSSLVEGEPVEDGIIKLVTHGVMSVDDYFWCVENGRAATASLSAFFR 155
Query: 229 RSLQ 232
++ Q
Sbjct: 156 KNFQ 159
>gi|410982976|ref|XP_003997820.1| PREDICTED: exosome complex component RRP46 [Felis catus]
Length = 235
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSEGTLVLDPTAKQEKEAR--AILTF 183
>gi|328771377|gb|EGF81417.1| hypothetical protein BATDEDRAFT_23824 [Batrachochytrium
dendrobatidis JAM81]
Length = 217
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 104/173 (60%), Gaps = 1/173 (0%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R D R+ QLR + C +L RA GSA ++ G + VL +VYGP A ++E + A I+V
Sbjct: 18 RPDKRSVTQLRTMGCVVGMLSRADGSARFTLGKSSVLCSVYGPTASRPRDEKLDHAHIQV 77
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
++ P +G G E+ YE +++ +++I + ++P TT + +QV+ DDG++L AINAA
Sbjct: 78 VFSPVSGISGTQERTYEHFIRQVVEAIVLSALHPRTTIQITLQVLFDDGSILSTAINAAV 137
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILS 177
AL+DAGIP+ A+ C ++ G +LDP LE + + LV P++ S
Sbjct: 138 LALIDAGIPLSKTCSAVTCMISKEGVLLLDPVLLECSEAQSMHILV-PDATFS 189
>gi|20070392|ref|NP_613052.1| exosome complex component RRP46 [Mus musculus]
gi|21759413|sp|Q9CRA8.1|EXOS5_MOUSE RecName: Full=Exosome complex component RRP46; AltName:
Full=Exosome component 5; AltName: Full=Ribosomal
RNA-processing protein 46
gi|12839596|dbj|BAB24607.1| unnamed protein product [Mus musculus]
gi|12840879|dbj|BAB24993.1| unnamed protein product [Mus musculus]
gi|148692300|gb|EDL24247.1| exosome component 5, isoform CRA_b [Mus musculus]
Length = 235
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEAR--AILTF 183
>gi|431911571|gb|ELK13728.1| Exosome complex exonuclease RRP46 [Pteropus alecto]
Length = 231
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT +LA VYGP E KA++EVI +P+ G
Sbjct: 24 LRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 83
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QV+ D G+LL C +NAAC ALVDAG+P
Sbjct: 84 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVP 143
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++++ A L F
Sbjct: 144 MRALFCGVTCALDSDGTLVLDPTAKQEKEVR--AVLTF 179
>gi|312596907|ref|NP_001100963.2| exosome complex exonuclease RRP46 [Rattus norvegicus]
Length = 235
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDPDGNLVLDPTTKQEKEAR--AILTF 183
>gi|21706518|gb|AAH34358.1| Exosome component 5 [Mus musculus]
Length = 235
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEAR--AILTF 183
>gi|74199186|dbj|BAE33136.1| unnamed protein product [Mus musculus]
Length = 235
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEAR--AILTF 183
>gi|332242411|ref|XP_003270380.1| PREDICTED: exosome complex component RRP46 isoform 1 [Nomascus
leucogenys]
gi|441654056|ref|XP_004091049.1| PREDICTED: exosome complex component RRP46 isoform 2 [Nomascus
leucogenys]
Length = 235
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/164 (42%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIRLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>gi|187469539|gb|AAI67023.1| Exosc5 protein [Rattus norvegicus]
Length = 233
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 26 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 85
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 86 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMALVDAGVP 145
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 146 MRALFCGVTCALDPDGNLVLDPTTKQEKEAR--AILTF 181
>gi|417397593|gb|JAA45830.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 235
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 123/227 (54%), Gaps = 18/227 (7%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT +LA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QV+ D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGVLHPRTSITVVLQVISDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMQALFCGVTCALDADGTLMLDPTAKQEKEAR--AVLTFAL-------------- 185
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 186 -DSVEQKLLMSTTKGLFSDAELQQCLAAAQAASQHVFRFYRESLQRR 231
>gi|68533900|gb|AAH99290.1| LOC733302 protein [Xenopus laevis]
Length = 224
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 114/220 (51%), Gaps = 21/220 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR C S+L R GSA++ QGDT VLA VYGP E KA++EVI +P+TG
Sbjct: 17 LREYGCEQSLLSRPDGSATFLQGDTSVLAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 76
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
EK +E +++ T +S+ I +++P T+ ++++Q++ D G+LL C +NAAC L+DAG+P
Sbjct: 77 AIQEKNHEQLIRETCESVIIGSLHPRTSITIVLQIISDAGSLLSCCLNAACMGLMDAGLP 136
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M+ L + C G LDP ++++ + E E
Sbjct: 137 MRSLFCGVTCALDNDGNITLDPNDRQQKESRAVVTFAI-----------------ESTER 179
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKL----SDFLRR 229
++ + + G S + C+ + AS KL DF+RR
Sbjct: 180 KVLMTSSRGLYSAAELQQCIAAAQLASEKLFQFYRDFIRR 219
>gi|344298319|ref|XP_003420841.1| PREDICTED: exosome complex component RRP46-like [Loxodonta
africana]
Length = 235
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EV+ +P+TG
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVLLRPKTGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QV+ D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVISDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDADGNLVLDPTVKQEKEAR--AVLTF 183
>gi|403305478|ref|XP_003943292.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component RRP46,
partial [Saimiri boliviensis boliviensis]
Length = 238
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 55 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 114
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T ++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 115 PKIGLPGVAEKSRERLIRNTCEAAVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACIAL 174
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
VDAG+PM+ L + C G +LDPT +E+
Sbjct: 175 VDAGVPMRALFCGVTCALDSDGSLVLDPTSKQEK 208
>gi|302841757|ref|XP_002952423.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
gi|300262359|gb|EFJ46566.1| hypothetical protein VOLCADRAFT_105481 [Volvox carteri f.
nagariensis]
Length = 247
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 131/234 (55%), Gaps = 10/234 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RA GR P QLR L C S+L RA GSA W+Q + VLAAVYGP+ + E+ E+A +EV
Sbjct: 15 RARGRLPTQLRTLVCERSVLDRADGSAKWTQEGSSVLAAVYGPRQAKPQKEDAEQAVVEV 74
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
++KPR G G ++ +E+ ++ L+ + L + P T+ V++QV+ DGA+L CA+NAAC
Sbjct: 75 VYKPRAGLQGHEDRTFELEVRGILEGVIPLGMYPRTSIMVVLQVLQGDGAVLSCALNAAC 134
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGS 183
AALVDAGI M + ++ C E +LD EEQ K F + V + L+ +G
Sbjct: 135 AALVDAGIAMTSMYASVTCVLTEEERLLLDSDAAEEQAAKACFCFTVPHHYDLTKAIDGQ 194
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDF----LRRSLQS 233
++ + + S ++G+ + D R +++ F L +SLQ+
Sbjct: 195 VVIS-----NAALGSRSYGSFTSDHMLDAFMLARLGCERVAIFAWLSLTKSLQA 243
>gi|189441917|gb|AAI67726.1| LOC100170617 protein [Xenopus (Silurana) tropicalis]
Length = 226
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/220 (34%), Positives = 114/220 (51%), Gaps = 21/220 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR C S+L R GSA++ QGDT V+A VYGP E KA++EVI +P+TG
Sbjct: 19 LREYGCEQSLLSRPDGSATFLQGDTSVMAGVYGPAEIKVSREIHNKATLEVILRPKTGLP 78
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
EK E +++ T +S+ I +++P T+ ++++Q+V D G+LL C +NAAC L+DAG+P
Sbjct: 79 AIQEKNQEQLIRETCESVIIGSLHPRTSITIVLQIVSDAGSLLSCCLNAACMGLMDAGLP 138
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
M+ L + C G LDP ++++ + A L F E E
Sbjct: 139 MRALFCGVTCAMDNDGTITLDPNFRQQKESR--AVLTFAI---------------ESTER 181
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKL----SDFLRR 229
++ G S + C+ + AS KL DF+RR
Sbjct: 182 KVLMMSNRGVYSATELQQCIAAAQIASEKLFQFYRDFIRR 221
>gi|126697382|gb|ABO26648.1| exosome component 5 [Haliotis discus discus]
Length = 211
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 125/225 (55%), Gaps = 19/225 (8%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
LRP+ +L R G+ +++QGDT +LAAVYGP E ++A++EVI+KP++G
Sbjct: 2 TDLRPMTSDLGVLTRPDGTVTFTQGDTGILAAVYGPGEVKIAREILDRATVEVIYKPKSG 61
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
G E+ +E ++ T++++ + +++P + SV +Q + D G+LL C++NAAC AL+DA
Sbjct: 62 LPGCSERLHERYIRNTVETVILASLHPRSCISVTVQELQDSGSLLACSVNAACLALLDAC 121
Query: 132 IPMKHLAVAICCCSAESGYCILDP-TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEP 190
+ MK+L + G +L P K E +K+ G +++ E
Sbjct: 122 VNMKYLIAGVYVIIDREGNTVLVPDLKQEGEKVAGVTFVL------------------EN 163
Query: 191 MEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ ++T + G+++ + + CL +AA+ ++ F R +++ K+
Sbjct: 164 QTYSVVTMSSRGSLTTEQFHRCLLHAQAAAKQIFSFYRIAVEKKM 208
>gi|327276285|ref|XP_003222900.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 1 [Anolis
carolinensis]
Length = 223
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 17/229 (7%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E + D + LR + C +L R GSASW QGDT VLA VYGP E +KA+
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKAT 63
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
+EV+ +P+ G G E+ E ++K+T +++ + T++P ++ ++++QV+ D G+LL +N
Sbjct: 64 LEVMLRPKVGLPGVYERSREQMIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLASCLN 123
Query: 122 AACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
AAC L+DAG+PM L + C G LDPT +E++ A V +I S+
Sbjct: 124 AACMGLMDAGLPMGSLFCGVTCALDADGNFTLDPTAKQEKE----AQTVLTFAIDSI--- 176
Query: 182 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
E ++ S G SV+ C+ + A+ + F R S
Sbjct: 177 ----------EKKVLMSSMKGTCSVEQLQQCVAASQRAADTIFQFYRDS 215
>gi|170067650|ref|XP_001868566.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
gi|167863769|gb|EDS27152.1| exosome complex exonuclease RRP46 [Culex quinquefasciatus]
Length = 217
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
+ LRP+ C +IL R+ GSA +QG+T V A+V GP ++ N EK+ +E+ ++PR+G
Sbjct: 8 DSLRPMFCELNILTRSDGSAMLTQGETAVTASVNGPVEVKLQHMNVEKSYVEIHFRPRSG 67
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E +++ T +S + ++P T S+ IQ + D G L+ CAINA C AL+D+G
Sbjct: 68 MGSVNDRLLENLIRNTYESALLTALHPRTAVSIQIQEMQDRGGLVACAINAVCLALIDSG 127
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
I MK+L A+ E G LDP +L + + VF N+
Sbjct: 128 IEMKYLVAAVHSVLDEEGGITLDPDELRAKDARARFTFVFENT----------------- 170
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
++ THG + + Y L A ++ DF R
Sbjct: 171 SRNTVSIYTHGKFTSEQYHRALRMSTDAVGRVFDFYR 207
>gi|157114354|ref|XP_001658056.1| hypothetical protein AaeL_AAEL006819 [Aedes aegypti]
gi|108877318|gb|EAT41543.1| AAEL006819-PA [Aedes aegypti]
Length = 217
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 17/218 (7%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP 68
++ N LRP+ C ++L R+ GSA +QG+T V+A+V GP ++ N EK+ I++ +KP
Sbjct: 5 KSENSLRPMHCELNLLTRSDGSAMLTQGETAVVASVNGPIEVKLQHMNVEKSHIDIYFKP 64
Query: 69 RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALV 128
R+G ++ E ++K T +S + ++P T S+ +Q + D G L+ CAINA C AL+
Sbjct: 65 RSGMGSVNDRLLESLIKNTYESAILTGLHPRTAISIQLQEMQDQGGLVACAINAVCLALM 124
Query: 129 DAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQG 188
++GI MK L A+ E G +LDP L+ + + VF N
Sbjct: 125 NSGIEMKFLVAAVHSVLREDGDIVLDPDALQSKDARAKFTFVFENCT------------- 171
Query: 189 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDF 226
++ THG + + Y L+ A K+ F
Sbjct: 172 ----RNTVSIYTHGKFTTEQYHRALKMAEEAVEKVFGF 205
>gi|346472235|gb|AEO35962.1| hypothetical protein [Amblyomma maculatum]
Length = 226
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 17/228 (7%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW 66
D +LR LA S L R GSA +QG+T V A VYGP + E EKA++EV +
Sbjct: 2 DTSQTGRLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPAEVKQARELHEKATVEVFF 61
Query: 67 KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 126
+ ++G ++ E +++ TL++ + ++P + S+ Q +H+DG LL C INA+C A
Sbjct: 62 RSKSGHQSCSDRLTEKVVRSTLETAMLTALHPRSCISLTCQELHNDGGLLACCINASCLA 121
Query: 127 LVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV 186
++DA + MK A+ + G +LDP++ +E++ K L F
Sbjct: 122 VIDAAVSMKCHIAAVTAALTQEGTVVLDPSRQQEEEAKAVCTLSF--------------- 166
Query: 187 QGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
E E ++++ T G S D++ CL +AA+ + F + +L+ +
Sbjct: 167 --ESQESKLVSTHTTGHFSKDEFQKCLALCQAAAGDIFAFYQDALERR 212
>gi|440796320|gb|ELR17429.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 236
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 22/188 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
MEV R+ GR NQLR + +L++ GSA ++ G + V+ AVYGP ++E ++A
Sbjct: 1 MEVKRSGGRTNNQLRAVTSELGLLNKPDGSAKYTAGKSAVVVAVYGPIEVKHRDEILDRA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+I+V W P +G G E+E E+I+ +Q+ I T++P T +++Q +L AI
Sbjct: 61 TIKVHWSPSSGTGGPEEREKEMIVANVVQNAIIATLHPRTLIEIVVQ-------MLAAAI 113
Query: 121 NAACAALVDAGIPMKH---------------LAVAICCCSAESGYCILDPTKLEEQKMKG 165
NA C ALVDAGIP+K+ ++ C A++G +LDP EE +
Sbjct: 114 NATCLALVDAGIPLKYRPAHPTLDFALELLSWIASVTCAIAQNGVFVLDPDLAEESAARA 173
Query: 166 FAYLVFPN 173
F N
Sbjct: 174 VLLFAFNN 181
>gi|449510334|ref|XP_002198831.2| PREDICTED: exosome complex component RRP46-like, partial
[Taeniopygia guttata]
Length = 208
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 109/199 (54%), Gaps = 17/199 (8%)
Query: 36 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 95
GDT VLA +YGP E P++A+++V+ +P+ G G E+ E +L++T +++ +
Sbjct: 23 GDTSVLAGLYGPAEAKISKELPDRAALDVLLRPKVGLPGVLERSREQLLQQTCEAVVLGV 82
Query: 96 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155
++P T S+++QV+ D G+LL C +NAAC AL+DAG+P+ L + C G +LDP
Sbjct: 83 LHPRTAISLVLQVLSDAGSLLSCCLNAACMALLDAGLPLSALFCGVTCALQPDGAILLDP 142
Query: 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 215
T +EQ+ + A L F +I S E ++ T G+ SV + CL
Sbjct: 143 TARQEQEAR--AVLTF--AIASA-------------ERKVLMVTTKGSCSVQEMQQCLAA 185
Query: 216 GRAASAKLSDFLRRSLQSK 234
+ A+ + F R S++ +
Sbjct: 186 SQRAADTIFQFYRDSVRRR 204
>gi|357620682|gb|EHJ72793.1| exosome complex exonuclease RRP46 [Danaus plexippus]
Length = 205
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 17/212 (8%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ C + L R+ GSA SQG+T V +V GP +++ EKA++E+++ + G+
Sbjct: 1 MKCELNFLSRSDGSAILSQGETVVTVSVNGPLDIKTTSQSIEKATLEILFSSKGGKPSVA 60
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
++ E ++++T ++ + + P T ++ IQ + D G LL CAIN AC AL+++GI + H
Sbjct: 61 DRFKENVIRQTCETAILGCLYPRTGITITIQELEDYGGLLSCAINCACLALLNSGISLHH 120
Query: 137 LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGII 196
+ A+ C E+G +L+P+ + Q Y VF + + ++
Sbjct: 121 VVAAVSCIVDETGNIVLEPSYQQVQSATTKLYFVF-----------------DSRDKNLV 163
Query: 197 TSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
T T GA+ D Y LE+ RAAS + DF R
Sbjct: 164 TGFTEGAVGEDMYLEALEKCRAASDLVFDFYR 195
>gi|325182492|emb|CCA16947.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 251
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 123/257 (47%), Gaps = 41/257 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGRN N+LR ++ LHRA GS++ + GDT VL AVYGP +A +NE +KA+I+
Sbjct: 6 RDDGRNCNELRQISSEQGTLHRADGSSNLTFGDTTVLVAVYGPGQAKIARNELVDKAAID 65
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA--------- 114
V + G EKE E+I++R + I P T S++IQ++ D G+
Sbjct: 66 VCVRLNQGIAAAKEKEMELIVRRLYEPIIQRQEFPRTVISIVIQIIEDAGSISSLLTSHT 125
Query: 115 ----------------LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKL 158
L+ INA AL+DA I M + + CC E G +LDP++
Sbjct: 126 IGFGSCVEFLDRLCLYLVSAVINAVTMALMDAEIAMLGVVTSTTCCLTEDGSVLLDPSQK 185
Query: 159 EEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA 218
EE + +S++ SS + E G++ + G +S + F C E +
Sbjct: 186 EEAEC------------ISLVICASSF---QLAEGGVLFLSSEGPLSEEQLFSCAEACKR 230
Query: 219 ASAKLSDFLRRSLQSKL 235
S + F+R+S +L
Sbjct: 231 GSKCVETFIRQSYSKRL 247
>gi|383852760|ref|XP_003701893.1| PREDICTED: exosome complex component RRP46-like [Megachile
rotundata]
Length = 220
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 22/224 (9%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP 68
N LRP+ C + L GSA QGDT V+A VYGP + +KA +EV + P
Sbjct: 7 ENEFVLRPINCEMNQLSMPDGSAMLMQGDTAVIAGVYGPVEAKPQKMIYDKAFVEVSYTP 66
Query: 69 RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALV 128
G ++ E+ +K T ++ I+T +P T + IQ + D G LL C INAAC AL+
Sbjct: 67 IKGPAKVDDRMTEMYIKETCETAIIVTFHPATAICINIQELEDSGGLLACIINAACLALI 126
Query: 129 DAGIPMKHLAVAICCCSAES-GYCILDP--TKLEEQKMKGFAYLVFPNSILSVLPEGSSL 185
+A IPMK A+ C ES ILDP T+LE+ + + F Y
Sbjct: 127 NAAIPMKFTIAAVSCMIEESTDNIILDPDNTQLEDARAE-FTYAF--------------- 170
Query: 186 VQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ M+ +I T G + ++F +++ R AS ++ DF R
Sbjct: 171 ---DSMKKDVICCHTVGQFTEAEFFETIDKCRQASQRIFDFYRN 211
>gi|390370164|ref|XP_793149.3| PREDICTED: exosome complex component RRP46-like [Strongylocentrotus
purpuratus]
Length = 191
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 17/200 (8%)
Query: 36 GDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT 95
GDT V+AAVYGP +KA++ V +KP+ G G EK E +++ T +++ + T
Sbjct: 6 GDTSVMAAVYGPGDVKPNKALMDKATVTVTYKPKIGISGVREKALERMIRNTCETVLLTT 65
Query: 96 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155
+ P ++ +I+Q + D GALL C+INAAC A+++AGIPMK A CC + I+DP
Sbjct: 66 LFPRSSVDIIVQEIQDAGALLACSINAACLAMINAGIPMKCTVAASCCMMGKDEELIMDP 125
Query: 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 215
TK + + A V ++I + H +I S G+ SV+ Y +
Sbjct: 126 TKEQTKD----AECVLTSAI-------------DSSAHSLIASSMQGSCSVEQYHKLMSV 168
Query: 216 GRAASAKLSDFLRRSLQSKL 235
+ A K+ +F R +++ L
Sbjct: 169 CQKACDKVFEFYREAMERTL 188
>gi|321475274|gb|EFX86237.1| hypothetical protein DAPPUDRAFT_193332 [Daphnia pulex]
Length = 218
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 24/232 (10%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
N +R L C S+L RA GS +SQG+T V+A+VYGP + E ++ IE+ +KP+TG
Sbjct: 6 NSIRALKCEQSVLSRADGSVMFSQGNTVVMASVYGPLEAKIQKELSDRMYIELNYKPKTG 65
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
G E+ E ++K T I + ++P T + +Q + D G LL +INA C AL+D+G
Sbjct: 66 MPGVAERGKEKLIKTTCNHIILTNLHPRTAVCITVQEMQDGGTLLAASINAVCLALLDSG 125
Query: 132 IPMKHLAVAICCCSAESGYCILDP----TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
+P++ L A+ C + ILDP K + M FA+
Sbjct: 126 LPLQCLVAAVTCLVDKKDRIILDPCISTVKEGYKAMFTFAF------------------- 166
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ ++ +I S G + + + + AS + DF R+++ K +L
Sbjct: 167 -DSQKYNLILSHCEGQVPYQLFQKAMVLCQKASHVIFDFYRQAVLRKFSNEL 217
>gi|219130014|ref|XP_002185170.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403349|gb|EEC43302.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 140
Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
+DRADGR + LRPL+C LH A GSA W G T+VLAAV+GP A + +KA I
Sbjct: 1 MDRADGRLASTLRPLSCELGTLHNADGSALWKSGSTQVLAAVHGPVAPRQPQHETQKAKI 60
Query: 63 EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 122
+I K T + E+E+E + + L + + P + +++Q++ DG++L A+N
Sbjct: 61 SIIIKSGT-TVNTLEREWEAFITKALTACLVTEQYPRSVIQIVLQILSADGSVLGAALNG 119
Query: 123 ACAALVDAGIPMKHLAVAICC 143
A AAL+DAGI MK L VA+ C
Sbjct: 120 AVAALMDAGIAMKVLPVAVTC 140
>gi|443689973|gb|ELT92240.1| hypothetical protein CAPTEDRAFT_152902 [Capitella teleta]
Length = 218
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 16/228 (7%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
G QLR + S L + GSA QG + LAAVYGP+ E ++A++++++K
Sbjct: 6 GSEQCQLRKMLGELSRLSQPDGSAMLCQGTSTSLAAVYGPRDVRISKELVDRATMDIVYK 65
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+TG G + E I++ T +++ ++ +P T+ VI+Q + D G+ L C +NA AL
Sbjct: 66 PKTGLPGNDARFLERIIRSTCENMILVKQHPRTSIDVIVQEMQDSGSYLSCCLNAVTLAL 125
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQ 187
+DA +P+K+ A+ C G LDPTK +E ++ A++ F
Sbjct: 126 LDACLPLKYTVAAVTCIINREGELHLDPTKSQEAELNQ-AHMTFV--------------- 169
Query: 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ ++ +I G + Y CL +AAS ++ + R +L KL
Sbjct: 170 FDSIDRNVIACYAQGCYTTQQYHTCLMACQAASKEVFSYYREALTKKL 217
>gi|296233893|ref|XP_002762219.1| PREDICTED: exosome complex component RRP46 [Callithrix jacchus]
Length = 179
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 80/130 (61%)
Query: 32 SWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSI 91
+ GDT VLA VYGP E KA++EVI +P+ G G EK E +++ T +++
Sbjct: 20 TLGSGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAV 79
Query: 92 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151
+ T++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G
Sbjct: 80 VLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTL 139
Query: 152 ILDPTKLEEQ 161
+LDPT E+
Sbjct: 140 VLDPTSKREK 149
>gi|442750019|gb|JAA67169.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 223
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 17/234 (7%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR 69
NP +LR LA + R GSA + G+T + A VYGP + E EKA++EV ++ +
Sbjct: 5 NPARLRKLAVKFDNVSRPDGSALLAHGETVIQAGVYGPIEVRQARELAEKATVEVFYRSK 64
Query: 70 TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
TG ++ E +++ TL+++ ++ ++P T S+ +Q +H+DG+LL C INAAC A VD
Sbjct: 65 TGHQNCSDRLVEKVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAVD 124
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 189
A I MK A+ +G +LDP K +E++ + F E
Sbjct: 125 AAIAMKCQVAAVSAAITHTGIIVLDPNKKQEEEARATCTFSF-----------------E 167
Query: 190 PMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 243
+ ++++ T G S ++ CL RAA+A + F R + + + L E
Sbjct: 168 SRDSKVVSTRTTGRFSAQEFQKCLSACRAAAADIFAFYRDAFRRRYSKCLEAGE 221
>gi|327276287|ref|XP_003222901.1| PREDICTED: exosome complex exonuclease RRP46-like isoform 2 [Anolis
carolinensis]
Length = 262
Score = 111 bits (278), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 120/268 (44%), Gaps = 56/268 (20%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E + D + LR + C +L R GSASW QGDT VLA VYGP E +KA+
Sbjct: 4 EQKKCDSGDLPSLRRIVCEQGLLSRPDGSASWMQGDTSVLAGVYGPSEVKVSKEIYDKAT 63
Query: 62 IEVIWKPRTG---------------------------------------QIGKPEKEYEI 82
+EV+ +P+ G + G E+ E
Sbjct: 64 LEVMLRPKVGLPGLQPSLPRSAGVSPNYNSDNSIFVPEDLEVLKIKQSSEQGVYERSREQ 123
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
++K+T +++ + T++P ++ ++++QV+ D G+LL +NAAC L+DAG+PM L +
Sbjct: 124 MIKKTCEAVVLGTLHPRSSITIVLQVITDAGSLLASCLNAACMGLMDAGLPMGSLFCGVT 183
Query: 143 CCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG 202
C G LDPT +E++ A V +I S+ E ++ S G
Sbjct: 184 CALDADGNFTLDPTAKQEKE----AQTVLTFAIDSI-------------EKKVLMSSMKG 226
Query: 203 AMSVDDYFHCLERGRAASAKLSDFLRRS 230
SV+ C+ + A+ + F R S
Sbjct: 227 TCSVEQLQQCVAASQRAADTIFQFYRDS 254
>gi|198433180|ref|XP_002130542.1| PREDICTED: similar to predicted protein isoform 1 [Ciona
intestinalis]
Length = 235
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 34/236 (14%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
C + L A GSA +SQG+T V+ AVYGP + + +KA +EV ++P+ G
Sbjct: 19 FQCEMNALKNADGSAFYSQGETSVMVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVN 78
Query: 77 EKEYEIILKRTLQSIC----ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
EK L+R +Q +C +L ++P T ++I+Q++ D G+LL CAINA C AL DAG+
Sbjct: 79 EK----YLERFVQGVCENAIMLALHPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGV 134
Query: 133 PMKHLAVAICCC---SAES------GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
MKHL VA+ +ES I++PT EE + VF
Sbjct: 135 SMKHLPVAVTVALRKESESELEDATDVLIINPTIKEESESFSILTFVF------------ 182
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + ++ + G + + CL+ + A+ ++ F R S+ K+ L
Sbjct: 183 -----DSVNKNLLCMHSQGPLLPKQHERCLKAAKEATEEVLKFFRDSVTQKVAAGL 233
>gi|326430537|gb|EGD76107.1| hypothetical protein PTSG_00813 [Salpingoeca sp. ATCC 50818]
Length = 219
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 12/163 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +LRP+ C ++L + GSAS+S GD+ V+AAVYGP+ E +++++EV
Sbjct: 5 RVDGRKAMELRPMQCDLALLDKPDGSASFSFGDSSVMAAVYGPRDVPLSREKHDRSTVEV 64
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTIN-----PNTTTSVIIQVVHDDGALLPCA 119
W P+ E L+ L + + P + V+IQ +++DG +L CA
Sbjct: 65 AWH------SAPDNEQGAALQSHLTEFVVNALASIHDFPRSAIRVVIQELNNDGGMLACA 118
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
INA C AL+DAGI + + A C+ G ILDPT +E+ K
Sbjct: 119 INATCLALMDAGISLTAM-FAAASCAVVDGQLILDPTLIEQNK 160
>gi|380026087|ref|XP_003696793.1| PREDICTED: exosome complex component RRP46-like [Apis florea]
Length = 223
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 106/218 (48%), Gaps = 20/218 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP+ C + L GSA QG+T V+A +YGP + +KASIEV + P G
Sbjct: 15 LRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASIEVSYIPVKGPA 74
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E+ +K T ++ I+T +P T + IQ + D G +L C INAAC AL++AGIP
Sbjct: 75 KIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLALINAGIP 134
Query: 134 MKHLAVAICCCSAE-SGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPM 191
MK A+ C E + ILDP + Q K F Y + +
Sbjct: 135 MKFTIAAVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAF------------------DSV 176
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ II T G + +++ +++ + AS + DF R
Sbjct: 177 KKDIICCYTAGCFTEEEFLETIDKCKQASQYVFDFYRN 214
>gi|427786915|gb|JAA58909.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 226
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME +R GR LR LA S L R GSA +QG+T V A VYGP + E+PEKA
Sbjct: 1 METNRT-GR----LRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKA 55
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
++EV ++ ++GQ ++ E +++ TL++ + ++P + S+ Q H++G LL CAI
Sbjct: 56 TVEVFFRSKSGQQSCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEFHNNGGLLACAI 115
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAAC A +DA + MK A+ +G +LDP +EQ+ + F
Sbjct: 116 NAACLAAIDAAVSMKCHIAAVTAAITNTGIIVLDPDGQQEQEARAVCTFSF--------- 166
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
E E ++++ T G S +++ CL +AA+ + F + +LQ +
Sbjct: 167 --------ESQESKLVSTYTSGKFSKEEFQKCLALCQAAAGDIFAFYQDALQKR 212
>gi|384498296|gb|EIE88787.1| hypothetical protein RO3G_13498 [Rhizopus delemar RA 99-880]
Length = 246
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 120/253 (47%), Gaps = 36/253 (14%)
Query: 3 VDRADGRNPN-QLRPLACSCSILHRAHGSASW-------------------SQGDTKVLA 42
V R D R N Q R L+ S +IL RA GSA + +G T V+
Sbjct: 2 VTRPDRRADNKQTRTLSASQNILSRADGSAKFEFGIKRNQTYCYLHAYICLQKGTTSVIC 61
Query: 43 AVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 102
+V GP ++E ++A++EVI +P G EK E L+ T + I + + P T
Sbjct: 62 SVSGPVEVQMRDEKLDEATVEVIVRPAKGVRATKEKLIENTLRTTFEPIILGGMMPRTLI 121
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC-SAESGYCILDPTKLEEQ 161
+ +QV+ DDG++L +INA AL+DAGIP+K++A A+ C ++ +LDPT +E Q
Sbjct: 122 QITVQVIKDDGSVLAASINAIALALLDAGIPLKYMAAAVTCMFDNKTCEVVLDPTAVELQ 181
Query: 162 KMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA 221
K F N+ ++ S + G + +Y C E A
Sbjct: 182 DAKSVHTFAFDNT---------------RKTSNVLLSDSDGIFNEAEYSSCQEACFEAVG 226
Query: 222 KLSDFLRRSLQSK 234
++ FLR +++SK
Sbjct: 227 QIHTFLRTAVESK 239
>gi|350422333|ref|XP_003493132.1| PREDICTED: exosome complex component RRP46-like [Bombus impatiens]
Length = 220
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LRP+ C + L GSA QG+T V+A +YGP + +KAS+EV + P G
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQGNTAVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGP 70
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
++ E+ +K T ++ I+T +P T + IQ + D G +L C INAAC AL++AGI
Sbjct: 71 AKVDDRMTEMYIKETCEAAIIVTFHPATAICINIQELEDSGGILACTINAACLALINAGI 130
Query: 133 PMKHLAVAICCCSAE-SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
PMK A+ C E + +LDP + Q+ + F + M
Sbjct: 131 PMKFTIAAVNCMIQEGTENIVLDPDTTQLQEARAEFTFAF-----------------DSM 173
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+I T G+ + ++ +E+ + S + DF R
Sbjct: 174 NKDVICCNTVGSFTETEFLEAMEKCKQVSQYVFDFYRN 211
>gi|427786901|gb|JAA58902.1| Putative rrp46 subunit of eukaryotic exosome [Rhipicephalus
pulchellus]
Length = 231
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 116/222 (52%), Gaps = 17/222 (7%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR LA S L R GSA +QG+T V A VYGP + E+PEKA++EV ++ ++GQ
Sbjct: 13 RLRKLAAKFSNLSRPDGSAILAQGETVVQAGVYGPVEVKQMREHPEKATVEVFFRSKSGQ 72
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
++ E +++ TL++ + ++P + S+ Q H++G LL CAINAAC A +DA +
Sbjct: 73 QSCSDRMSEKVIRSTLETAMLTALHPRSCISLTCQEFHNNGGLLACAINAACLAAIDAAV 132
Query: 133 PMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 192
MK A+ +G +LDP +EQ+ + F E E
Sbjct: 133 SMKCHIAAVTAAITNTGIIVLDPDGQQEQEARAVCTFSF-----------------ESQE 175
Query: 193 HGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++++ T G S +++ CL +AA+ + F + +LQ +
Sbjct: 176 SKLVSTYTSGKFSKEEFQRCLALCQAAAGDIFAFYQDALQKR 217
>gi|354499539|ref|XP_003511866.1| PREDICTED: exosome complex component RRP46-like [Cricetulus
griseus]
Length = 279
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
Query: 30 SASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQ 89
SA ++ DT VLA VYGP E KA++EVI +P+ G G EK E +++ T +
Sbjct: 99 SALRTRRDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCE 158
Query: 90 SICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM+ L + C G
Sbjct: 159 AVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVSCALDSDG 218
Query: 150 YCILDPTKLEEQKMKGFAYLVF 171
+L PT +E++ + A L F
Sbjct: 219 NLVLGPTTKQEKEAR--AILTF 238
>gi|328784959|ref|XP_624485.2| PREDICTED: exosome complex exonuclease RRP46 [Apis mellifera]
Length = 229
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 20/218 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP+ C + L GSA QG+T +A +YGP + +KASIEV + P G
Sbjct: 21 LRPMNCELNQLSMPDGSAMLMQGNTAAVAGIYGPIEAKLQKMIYDKASIEVSYIPVKGPA 80
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E+ +K T ++ I+T +P T + IQ + D G +L C INAAC AL++AGIP
Sbjct: 81 KIDDRMTEMYIKETCEAAIIVTFHPATAICINIQEMEDSGGMLACTINAACLALINAGIP 140
Query: 134 MKHLAVAICCCSAE-SGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPM 191
MK A+ C E + ILDP + Q K F Y + +
Sbjct: 141 MKFTIAAVNCMIQEGTNNIILDPDSTQLQDAKAEFTYAF------------------DSV 182
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ II T G + +++ +++ + AS + DF R
Sbjct: 183 KKDIICCYTAGCFTEEEFLETIDKCKQASQYVFDFYRN 220
>gi|159469337|ref|XP_001692824.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
gi|158278077|gb|EDP03843.1| exosome complex exonuclease [Chlamydomonas reinhardtii]
Length = 242
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 95/159 (59%)
Query: 15 RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG 74
R L C ++L RA GSA W+Q + VLAAVYGP+ + E+ E+A +EV++KPR G G
Sbjct: 3 RTLVCERAVLDRADGSAKWTQEGSSVLAAVYGPRQAKLQKEDAERAVVEVVFKPRAGLQG 62
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 134
++ E+ ++ L+ + L + P T+ V++QV+ DDG L CA+NAA AALVDAG+P+
Sbjct: 63 HEDRSLELEIRGILEGVIPLGMFPRTSVMVVLQVLQDDGGALSCALNAAAAALVDAGVPL 122
Query: 135 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+ ++ C +LDP LEEQ +P+
Sbjct: 123 NSMFSSVSCVLTSDRRLVLDPDALEEQAAAARFCFTYPH 161
>gi|340714151|ref|XP_003395595.1| PREDICTED: exosome complex component RRP46-like [Bombus terrestris]
Length = 220
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 18/218 (8%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LRP+ C + L GSA QG+T V+A +YGP + +KAS+EV + P G
Sbjct: 11 RLRPMNCELNQLSMPDGSAMLMQGNTTVVAGIYGPIEAKPQKMIYDKASVEVSYSPIKGP 70
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
++ E+ +K T ++ I+T +P T + +Q + D G +L C INAAC AL++AGI
Sbjct: 71 AKVDDRMTEMYIKETCEAAIIVTFHPATAICINVQELEDSGGILACTINAACLALINAGI 130
Query: 133 PMKHLAVAICCCSAE-SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
PMK A+ C E + I+DP + Q+ + F + M
Sbjct: 131 PMKFTIAAVNCMIQEGTENIIVDPDTTQLQEARAEFTFAF-----------------DSM 173
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ +I T G + ++ +E+ + S + DF R
Sbjct: 174 KKDVICCNTVGCFTETEFLEAMEKCKHVSQYIFDFYRN 211
>gi|301095816|ref|XP_002897007.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108436|gb|EEY66488.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 171
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 85/147 (57%), Gaps = 9/147 (6%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKAS 61
+ R DGR N+LRP A L RA GSA S G + VLAAVYGP +A + EN +KA+
Sbjct: 6 LQRQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLAAVYGPGQARNWRAENTDKAT 65
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL-LP--- 117
++V +K G + EKEYE I+++T + + P S+++QV+ D+G++ P
Sbjct: 66 LDVCFKLEKGIMTSKEKEYEQIIRQTFAPVVLTDSFPRAVISIVVQVIEDNGSISFPLFL 125
Query: 118 ----CAINAACAALVDAGIPMKHLAVA 140
AINA AL+DAG+PM + A
Sbjct: 126 IIAALAINAVSLALMDAGVPMLSVVTA 152
>gi|307185835|gb|EFN71676.1| Exosome complex exonuclease RRP46 [Camponotus floridanus]
Length = 220
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 107/218 (49%), Gaps = 20/218 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP+ C ++L R+ GS + QGDT ++A + GP + +K SIEV + P TG
Sbjct: 12 LRPMNCEINLLSRSDGSTMFMQGDTTIVAGINGPMEVKSQKMAYDKLSIEVTYTPLTGPA 71
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E ++ + +S +++++PNT + +Q V D G LL CAINA+C AL+++G+
Sbjct: 72 KVDDRLIETYIRESCESAILVSLHPNTMICINLQEVQDSGGLLACAINASCLALINSGLS 131
Query: 134 MKHLAVAICC-CSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPM 191
MK A+ C E+G I+DP + + K F Y + +
Sbjct: 132 MKFTIAAVSCMIEKETGKIIMDPDNTQLKNAKAEFTYAF------------------DSI 173
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
I+ + G S ++ +++ + S + DF R
Sbjct: 174 NKDIVCCHSVGRFSQSEFLASVDKCKQVSQFIFDFYRE 211
>gi|345489938|ref|XP_003426267.1| PREDICTED: exosome complex component RRP46-like [Nasonia
vitripennis]
Length = 216
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 18/216 (8%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRPL C + L GS + QGDT VLA VYGP + KA++E + P G
Sbjct: 8 LRPLNCELNYLSVPDGSTMFMQGDTSVLAGVYGPVEAKLQKMFHNKATVEATFGPIKGPP 67
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E+ ++ T + + +++P T S+ IQ + D G LL C+INAAC AL+++ I
Sbjct: 68 SIDDRFVELYVRDTCEGAILTSLHPAATVSINIQELQDCGGLLACSINAACLALINSSIA 127
Query: 134 MKHLAVAICC-CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 192
MK A+CC SG ++DP+ ++ Q K VF + +
Sbjct: 128 MKFTFAAVCCMIDKNSGDIVIDPSLIQTQNAKATFTCVF-----------------DSVN 170
Query: 193 HGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
+I T G + +D + + + AS + DF R
Sbjct: 171 KELICCQTSGQFTEEDLTESINKCKEASKYIFDFYR 206
>gi|332020128|gb|EGI60572.1| Exosome complex exonuclease RRP46 [Acromyrmex echinatior]
Length = 220
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 20/217 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP+ C ++L R+ GS + QGDT ++A V GP + ++ SIEV + P G
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIAGVNGPLEAKSQKMAYDRVSIEVTYTPLKGPA 71
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E +K T +S +++ +PNT + +Q + D G LL CAINA+C AL+++G+
Sbjct: 72 KVDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAINASCLALINSGLS 131
Query: 134 MKHLAVAICC-CSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPM 191
M+ AI C E+G I+DP + + + F Y + +
Sbjct: 132 MRFTVAAISCMIEKETGDIIMDPDSSQLKNARAEFTYAF------------------DSI 173
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
I+ + G S +++ +++ R S + D+ R
Sbjct: 174 NKDIVCCHSTGRFSQNEFLTSMDKCRHVSKCVFDYYR 210
>gi|322795793|gb|EFZ18472.1| hypothetical protein SINV_11798 [Solenopsis invicta]
Length = 220
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LRP+ C ++L R+ GS + QGDT ++ V GP + ++ASIEV + P G
Sbjct: 12 LRPINCEINLLSRSDGSTMFMQGDTTIIVGVNGPLETRSQKMAYDRASIEVTYTPLKGPA 71
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E +K T +S +++ +PNT + +Q + D G LL CAINA+C AL+++G+
Sbjct: 72 KIDDRLIETYIKETCESAILVSFHPNTMVCINLQEMQDSGGLLACAINASCLALINSGLS 131
Query: 134 MKHLAVAICC-CSAESGYCILDPTKLEEQKMKG-FAY 168
+K A+ C E+G I+DP + Q K F Y
Sbjct: 132 LKFTIAAVSCMIEKETGQVIIDPDSSQLQNAKAEFTY 168
>gi|422294508|gb|EKU21808.1| exosome complex component RRP41 [Nannochloropsis gaditana CCMP526]
Length = 249
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 110/220 (50%), Gaps = 17/220 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR PN+LR + C+ A GSAS QG T+VLA V+GP T+++E I
Sbjct: 15 RTDGRRPNELRRVHCTLGTYSNADGSASLKQGQTEVLAIVHGPHEVTRRSEVQHDKCIIE 74
Query: 63 -EVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
E P +G K + E + LK+T ++ + + P T + + V+ DG+
Sbjct: 75 CEFYRTPFSGFDRKKRRPTDRASLEASLALKQTFETAVMRNLYPRTQVDIQVYVLQGDGS 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL---VF 171
+LP AINA ALVDAG+ MK + A C + +LD T E+ G AY+ F
Sbjct: 135 ILPTAINAVSLALVDAGVAMKEMVTA-CSVALLDKQPVLDVTYKEQS--SGGAYMPLAAF 191
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 211
P +L + + ++GE +E ++T++ G+ V F
Sbjct: 192 PIHGEIILIQCEARLEGERLEEMMLTAM-EGSRQVSQLFQ 230
>gi|422295380|gb|EKU22679.1| exosome complex component RRP46, partial [Nannochloropsis gaditana
CCMP526]
Length = 244
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 91/183 (49%), Gaps = 25/183 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGT-KKNENPEKASIE 63
R D R NQLRP C L+RA GSA ++QG T VLAAVYGP A + E E A++E
Sbjct: 27 RPDRRLANQLRPPMCELGPLNRADGSARFAQGQTSVLAAVYGPAAPRFSRKERVEGAAVE 86
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
V P G EKE E +K L++ L P T VI QV D+G L+ C +NAA
Sbjct: 87 VTVHPHYGLATSSEKEKEGAVKALLEAAICLERFPRTVIHVICQVYEDNGGLMACLMNAA 146
Query: 124 CAALVDAGIPMKH--LAVAICCCSAESG----------------------YCILDPTKLE 159
A+++AGI MK+ L V++ S S Y +LDP E
Sbjct: 147 SLAVINAGIDMKYVPLTVSLALISPPSATMKALPSLPPSSSTTAPTSSSTYLLLDPINEE 206
Query: 160 EQK 162
E++
Sbjct: 207 ERQ 209
>gi|301620138|ref|XP_002939437.1| PREDICTED: exosome complex exonuclease RRP46 [Xenopus (Silurana)
tropicalis]
Length = 181
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 97/193 (50%), Gaps = 21/193 (10%)
Query: 41 LAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNT 100
+A VYGP E KA++EVI +P+TG EK E +++ T +S+ I +++P T
Sbjct: 1 MAGVYGPAEIKVSREIHNKATLEVILRPKTGLPAIQEKNQEQLIRETCESVIIGSLHPRT 60
Query: 101 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+ ++++Q+V D G+LL C +NAAC L+DAG+PM+ L + C G LDP ++
Sbjct: 61 SITIVLQIVSDAGSLLSCCLNAACMGLMDAGLPMRALFCGVTCAMDNDGTITLDPNFRQQ 120
Query: 161 QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAAS 220
++ + A L F E E ++ G S + C+ + AS
Sbjct: 121 KESR--AVLTFAI---------------ESTERKVLMMSNRGVYSATELQQCIAAAQIAS 163
Query: 221 AKL----SDFLRR 229
KL DF+RR
Sbjct: 164 EKLFQFYRDFIRR 176
>gi|452825155|gb|EME32153.1| exosome complex component RRP46 [Galdieria sulphuraria]
Length = 217
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 12/220 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R C L RA GS QG T+V+AAVYGP +NE P++ ++V
Sbjct: 9 RRDGRKAYEIRGFRCELGYLERADGSCRLEQGRTQVVAAVYGPLEARGRNELPDRTFVDV 68
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+P G + E LK + I P + +++IQ++ +DG+L+ INA
Sbjct: 69 SIRPFQGYTTDYLRLRERELKEIFDATIATEIQPRSCVTIVIQIIENDGSLMAAVINACM 128
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
+L+ AGIP LA + +LDPT +EE ++G+A S++S EG
Sbjct: 129 LSLLSAGIPCHWLAASCTVSYRGKDGVLLDPTLVEE--LEGYA-----TSVISYGYEGPQ 181
Query: 185 LVQGEPMEHGIITSVTHGAMSVDD-YFHCLERGRAASAKL 223
V + +I +G +S D YF L + A K+
Sbjct: 182 SV----LSQNLIGLHCNGFVSSQDIYFSSLSFSQEACRKV 217
>gi|289742861|gb|ADD20178.1| exosomal 3'-5' exoribonuclease complex subunit Rrp46 [Glossina
morsitans morsitans]
Length = 245
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 111/232 (47%), Gaps = 18/232 (7%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M+V+ D +LR L C + L R GS + QG T VLA++ GP +N +KA
Sbjct: 8 MQVNE-DAVKNTKLRTLNCELNPLTRTDGSTLFIQGATCVLASMLGPVEVKLQNLKIDKA 66
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
++ I++P+ G +K E ++K T ++ + ++P T S+ +Q + D G L CAI
Sbjct: 67 HVDCIYRPKAGLPTIRDKIRETMIKDTCEAALLSALHPRTLISIQLQELDDRGGLDACAI 126
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAAC AL+ G+PMK A+ C ++G +LDP +L+ + VF
Sbjct: 127 NAACMALLIGGVPMKFTVAAVHCVVDKNGEIVLDPDQLQAADNRASFTFVF--------- 177
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+ +E ++ + G ++ + AAS+ L DF R +
Sbjct: 178 --------DSVERDLVAVHSFGCFKINQFKDAHLICLAASSTLFDFYREIMH 221
>gi|389860735|ref|YP_006362975.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
gi|388525639|gb|AFK50837.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermogladius
cellulolyticus 1633]
Length = 242
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 115/239 (48%), Gaps = 27/239 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A+GSA G TKVLAAVYGP+ K + P++A +
Sbjct: 15 RVDGRKPDELRPIRMEIGVLKNANGSALVEYGGTKVLAAVYGPREVIPKAVQLPDRAVLR 74
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S+ P + V I+V+ DG
Sbjct: 75 VRYHMAPFSTTEHKSPAPTRREIELSKVIREALESVVFADQFPRASIDVFIEVIQADGGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
+ AA AL DAGIPMK L + E G +LD +LE++ +
Sbjct: 135 RTAGLTAASLALADAGIPMKDLVAGVAVGKVE-GVLVLDINELEDEYGE----------- 182
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ LP G ++ GE I+ +G ++V+++ +E + + K+ ++ +L K
Sbjct: 183 -ADLPVGYAVGIGE-----IVLLQLNGVLTVEEFKKAIELAKRGAEKVYALMKETLHKK 235
>gi|347967317|ref|XP_308011.5| AGAP002177-PA [Anopheles gambiae str. PEST]
gi|333466351|gb|EAA03766.5| AGAP002177-PA [Anopheles gambiae str. PEST]
Length = 226
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 17/224 (7%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR 69
N LR + C ++L R+ SA+ SQG T+V+ A GP KN E +EV ++
Sbjct: 11 NSLNLRRMVCETNVLSRSDCSAALSQGATQVMVAANGPAEVKFKNAESENCHLEVQYRSN 70
Query: 70 TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
GQ + E ++KR+ + + + +Q + D G LL C+INA+C AL+
Sbjct: 71 AGQEDIQHRLMESLIKRSFVRVVATPAFCRSAVYIYVQEMTDRGGLLACSINASCLALIT 130
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 189
+G+ + A+ C E G ILDP + +++K L S +
Sbjct: 131 SGVELNFTVAAVHCIMTEDGAMILDP---DHKQLK--------------LARSSFTFVFD 173
Query: 190 PMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQS 233
+ +TS HG+ + ++Y + R A K+ DF R+ Q+
Sbjct: 174 SIGKNTVTSYVHGSFTFEEYEQVVSVCRKAVEKIFDFYRKVSQN 217
>gi|348677627|gb|EGZ17444.1| hypothetical protein PHYSODRAFT_499334 [Phytophthora sojae]
Length = 170
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/144 (38%), Positives = 81/144 (56%), Gaps = 8/144 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR N+LRP A L RA GSA S G + VLA+VYGP +A + E +KA+++
Sbjct: 8 RQDGRAGNELRPFASEQGALFRADGSARMSHGSSTVLASVYGPGQARNWRAEKTDKATLD 67
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL-LPC---- 118
V +K G E+EYE I++ T + + P S+++QV+ D+G++ P
Sbjct: 68 VCFKLEKGITTSKEREYEQIIRETFTPVVLTDSFPRAVISIVVQVIEDNGSISFPLFSYY 127
Query: 119 --AINAACAALVDAGIPMKHLAVA 140
AINA AL+DAG+PM + A
Sbjct: 128 AFAINAVSLALMDAGVPMLSVVTA 151
>gi|328865596|gb|EGG13982.1| Exosome complex exonuclease rrp41 [Dictyostelium fasciculatum]
Length = 244
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 14/168 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N++R L +L+RA GS+ + QG+TK+ A+YGP T + ++ASI+
Sbjct: 13 RIDGRRSNEIRRLNMRMGVLNRADGSSYYEQGNTKITVAIYGPHESTTQKSLFDRASIKC 72
Query: 65 IW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + K E ++K+ +S + + P + + +QV+ DG L
Sbjct: 73 EFAMSSFSTSERKVKSRFDKTAYETSTLIKQAFESTVLTHLFPRSQIDIYVQVLQSDGGL 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQ 161
AINA A++DAGIPM+ +C CSA G ++D +EE+
Sbjct: 133 KSAAINAVTLAMIDAGIPMRDY---VCACSATFIEGSALMDLNHMEER 177
>gi|395751236|ref|XP_002829311.2| PREDICTED: exosome complex component RRP46, partial [Pongo abelii]
Length = 207
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 24/157 (15%)
Query: 37 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ----------------------IG 74
DT VLA VYGP E KA++EVI +P+ G G
Sbjct: 1 DTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPAGVSGWQSGLAFFPLESSIIPAG 60
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 134
EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC ALVDAG+PM
Sbjct: 61 VAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPM 120
Query: 135 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
+ L + C G +LDPT +E++ + A L F
Sbjct: 121 RALFCGVTCALDSDGTLMLDPTSKQEKEAR--AVLTF 155
>gi|297822455|ref|XP_002879110.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
gi|297324949|gb|EFH55369.1| hypothetical protein ARALYDRAFT_320572 [Arabidopsis lyrata subsp.
lyrata]
Length = 128
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 62/96 (64%), Gaps = 16/96 (16%)
Query: 36 GDTKVLAAVYGPKAGTKKNENPEKASIEVIW-KPRTGQI---------------GKPEKE 79
GDTKVL A Y PKAGTKKNE EK EVIW KP I K E+E
Sbjct: 2 GDTKVLTAQYEPKAGTKKNETAEKTCFEVIWNKPDRLVIVNAFSFSEGGLFYCLRKVERE 61
Query: 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
YE ILKRTLQSIC+LT+ PNTTTSVIIQVVH G++
Sbjct: 62 YETILKRTLQSICVLTVVPNTTTSVIIQVVHVGGSV 97
>gi|325969194|ref|YP_004245386.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
gi|323708397|gb|ADY01884.1| exosome complex exonuclease 1 [Vulcanisaeta moutnovskia 768-28]
Length = 246
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R+DGR PN+ RP+ ++ A GSA + G+T +LAAVYGP+ +K+ E P+KA +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVISNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 64 VIWK--PRTGQIGKP-----EKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + P + G+ +E EI +++ L+ + IL P TT V I+V+ DG+
Sbjct: 75 VRYHMIPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGS 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
I AA AL DAGIPM+ L V + SG I+D +LE+Q +G
Sbjct: 135 TRVTGITAASLALADAGIPMRDLLVGVSVGKV-SGTIIVDLNQLEDQYGEG 184
>gi|307594960|ref|YP_003901277.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
gi|307550161|gb|ADN50226.1| exosome complex exonuclease 1 [Vulcanisaeta distributa DSM 14429]
Length = 246
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 95/171 (55%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R+DGR PN+ RP+ ++ A GSA + G+T +LAAVYGP+ +K+ E P+KA +
Sbjct: 15 RSDGRLPNEHRPVRMEVGVIKNAEGSALVAYGNTVILAAVYGPREVPQKHLELPDKAILR 74
Query: 64 VIWK--PRTGQIGKP-----EKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + P + G+ +E EI +++ L+ + IL P TT V I+V+ DG+
Sbjct: 75 VRYHMAPFSTSEGRKSPTPSRREIEISKVIRTALEPVVILERFPRTTIDVYIEVLQADGS 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
I AA AL DAGIPM+ L V + SG ++D +LE+Q +G
Sbjct: 135 TRVTGITAASLALADAGIPMRDLLVGVSIGKV-SGTIVVDLNQLEDQYGEG 184
>gi|15225666|ref|NP_178726.1| uncharacterized protein [Arabidopsis thaliana]
gi|3805760|gb|AAC69116.1| unknown protein [Arabidopsis thaliana]
gi|330250939|gb|AEC06033.1| uncharacterized protein [Arabidopsis thaliana]
Length = 150
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 72/112 (64%), Gaps = 18/112 (16%)
Query: 22 SILHRAHGSASW-SQGDTKVLAAVYGPKAGTKKNENPEKASIE----------VIWKPRT 70
S L+ HG+ S+ DTKVL+A YGPKA TKKNEN EKA ++ VI +
Sbjct: 8 SFLNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLKSYGSLKPDRLVIVNAFS 67
Query: 71 G-------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
++ K EKEYE ILKRTLQSIC+L + PNTTTSVIIQVVHD G++
Sbjct: 68 FSERGLFCRLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119
>gi|386002838|ref|YP_005921137.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
gi|357210894|gb|AET65514.1| Exosome complex exonuclease 1 [Methanosaeta harundinacea 6Ac]
Length = 251
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 109/245 (44%), Gaps = 40/245 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP------------KAGTK 52
R DGR P++LRP+ +L RA GS GD KV+AAVYGP +A +
Sbjct: 13 RLDGRRPDELRPIKIEVGVLERADGSCYIEMGDNKVIAAVYGPREVHPRHLQEVTRAIVR 72
Query: 53 KNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
N S+E +P G + YE+ + + L S+ + + P + + ++V+
Sbjct: 73 YRYNMASFSVEERKRP-----GPDRRSYEVSKVSREALASVILTSYFPRSVVDIFVEVLQ 127
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
D INAA AL DAGIPMK L ++ C G +LDP K E+ F
Sbjct: 128 ADAGTRTAGINAASVALADAGIPMKGL-ISSCAAGKVDGEIVLDPMKAEDN----FGEAD 182
Query: 171 FPNSILSVLPEGS-SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
P +++ P G +L+Q G +S D++ LE + ++ + RR
Sbjct: 183 VP---IAMTPGGEITLLQ------------MDGRLSRDEFRRALELAKVGCQQIYEVQRR 227
Query: 230 SLQSK 234
L +
Sbjct: 228 VLVDR 232
>gi|312377314|gb|EFR24174.1| hypothetical protein AND_11431 [Anopheles darlingi]
Length = 269
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR + C +IL R+ SA+ SQG T+V+ + GP +N E A +EV ++ G
Sbjct: 7 LRRMICETNILSRSDCSAALSQGATQVMVSANGPAEVKLRNAESENAHLEVQYRSNAGLE 66
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
+ E ++KR+ + T P + V +Q + D G LL C INA C AL+ GI
Sbjct: 67 DIQNRLVESLIKRSFVRVVASTAFPRSAVYVFVQEMTDKGGLLACCINATCLALITGGIE 126
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
+ A+ C E G ILDP + ++MK L S + +
Sbjct: 127 LNFTVAAVHCIIDEDGNMILDP---DSKQMK--------------LARSSFTFVYDSIAK 169
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+TS +G+ + D+Y + A K+ +F R+
Sbjct: 170 NTVTSYVYGSFTFDEYERVASVCKEAVDKIFNFYRK 205
>gi|193652700|ref|XP_001948203.1| PREDICTED: exosome complex exonuclease RRP46-like [Acyrthosiphon
pisum]
Length = 211
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 16/216 (7%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
L C L GSA SQG + V +V GP ++A+++V ++ +TG I
Sbjct: 6 LKCQLGFLGNTEGSAYLSQGKSTVSVSVVGPFEPKASKCMYDRATVDVTFRRKTGSITVH 65
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
+K E I++ T + ++ P TT V +Q + D G LL +NA+C L+++GI M H
Sbjct: 66 DKMLEGIMQSTCEKALVVEQYPRTTIVVTVQEMQDRGNLLSTCLNASCMGLMNSGIAMHH 125
Query: 137 LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGII 196
L A+ C E IL+P + + + LVF N+ L +
Sbjct: 126 LYAAVSCAVTEKEEIILNPDETQINSSVAYLTLVFANTETRCL----------------L 169
Query: 197 TSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
TS T G S Y C+++ AAS ++ +F ++ ++
Sbjct: 170 TSHTTGEFSQKTYMDCMDKCYAASKEVFNFYQKVIK 205
>gi|385806380|ref|YP_005842778.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
gi|383796243|gb|AFH43326.1| exosome complex exonuclease 1 [Fervidicoccus fontis Kam940]
Length = 246
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P+QLRP++ IL A GSA S G T+V+AAVYGP+ ++ P++A +
Sbjct: 16 RVDGRRPDQLRPISMKVGILKNAQGSALVSYGKTQVMAAVYGPREALPRHMTLPDRAILR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + ++ + E E +++ L++ + P TT V I+V+ DG
Sbjct: 76 IRYHMAPFSTSERKSPAPTRREIELSKVIREALEATVFSELFPRTTIDVFIEVLQADGGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA AL DAGIPMK L + + G +LD ++E+
Sbjct: 136 RTTSLTAASLALADAGIPMKDLIAGVAVGKVD-GVLVLDINEIED 179
>gi|195443592|ref|XP_002069486.1| GK11547 [Drosophila willistoni]
gi|194165571|gb|EDW80472.1| GK11547 [Drosophila willistoni]
Length = 237
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 97/186 (52%), Gaps = 4/186 (2%)
Query: 2 EVDRADGRNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
E+ G+ PN +LR + C + L R GS +SQG T V+AAV GP ++ + + +
Sbjct: 3 EIATDKGKVPNDKLREMRCEFNPLSRCDGSVMYSQGSTVVIAAVLGPVEVKTQSLSIDGS 62
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+E ++P+ G E+ E +++ L+ + P + SV IQ + D G++ CA+
Sbjct: 63 YLECNYRPKAGLPQVKERIRESVIQDVLELAVLGESYPRSKMSVQIQELEDRGSIDACAV 122
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILS 177
NAAC A++ G+PMK+ A+ C E G ILDP + E + FA+ +L
Sbjct: 123 NAACLAMIIGGLPMKYSFAAVQCIINEDGEYILDPDQRETLHQRASFTFAFDSLEGDLLL 182
Query: 178 VLPEGS 183
V +GS
Sbjct: 183 VQTKGS 188
>gi|297815448|ref|XP_002875607.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
gi|297321445|gb|EFH51866.1| hypothetical protein ARALYDRAFT_484800 [Arabidopsis lyrata subsp.
lyrata]
Length = 127
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 63/96 (65%), Gaps = 17/96 (17%)
Query: 37 DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI-----------------GKPEKE 79
DTKV+AA Y PKAGTK+NEN EKA EV + ++ K E+E
Sbjct: 20 DTKVIAAEYRPKAGTKENENAEKACFEVYGNLKPDRLVIVNALTCSKGGLFCCLRKVERE 79
Query: 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
YE ILKRTLQSIC+LT+ PNTTTSVIIQVVHD G++
Sbjct: 80 YETILKRTLQSICVLTVVPNTTTSVIIQVVHDGGSV 115
>gi|290989317|ref|XP_002677284.1| predicted protein [Naegleria gruberi]
gi|284090891|gb|EFC44540.1| predicted protein [Naegleria gruberi]
Length = 248
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 90/166 (54%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIE 63
R DGR +++R + ++ RA GSA + QG+T+VLAAVYGP+ K++ ++A I
Sbjct: 14 RVDGRRSHEIRNIKFKLNLFSRADGSAYYEQGNTRVLAAVYGPREVKNKSQMKNDRAIIN 73
Query: 64 VIWKPRTGQIGKPEKEYE---------IILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ T G+ +++++ +++++T +S+ + + P T + +QV+ DG
Sbjct: 74 CEYSMATFSTGERKRQFKKDRRSTEISVVIRQTFESVILTHLYPRTQIDIFMQVLQADGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL+DAGIPMK V+ C G + D +E+
Sbjct: 134 TRCACINAATLALLDAGIPMKDFVVS-CAAGFIQGSPLTDLNYIED 178
>gi|218884635|ref|YP_002429017.1| putative exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
gi|218766251|gb|ACL11650.1| Probable exosome complex exonuclease 1 [Desulfurococcus
kamchatkensis 1221n]
Length = 242
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P +LRP+ + +L A+GSA G+TK LAAVYGP+ K+ + P++A +
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILR 72
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S+ + P + V I+++ DG
Sbjct: 73 VRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQADGGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL DAGIPM+ L + + + G +LD +LE++
Sbjct: 133 RTTGLTAASLALADAGIPMRDLVIGVAVGKVD-GVLVLDINELEDE 177
>gi|390939121|ref|YP_006402859.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
gi|390192228|gb|AFL67284.1| exosome complex exonuclease 1 [Desulfurococcus fermentans DSM
16532]
Length = 242
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P +LRP+ + +L A+GSA G+TK LAAVYGP+ K+ + P++A +
Sbjct: 13 RIDGRKPEELRPVRIALGVLKNANGSALVEYGNTKALAAVYGPREALPKHISLPDRAILR 72
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S+ + P + V I+++ DG
Sbjct: 73 VRYHMAPFSTTERKSPAPSRREIELSKVIREALESVVFTSQFPRASIDVFIEILQADGGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL DAGIPM+ L + + + G +LD +LE++
Sbjct: 133 RTTGLTAASLALADAGIPMRDLVIGVAVGKVD-GVLVLDINELEDK 177
>gi|195037132|ref|XP_001990019.1| GH18468 [Drosophila grimshawi]
gi|193894215|gb|EDV93081.1| GH18468 [Drosophila grimshawi]
Length = 235
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 110/225 (48%), Gaps = 27/225 (12%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R+ GS +SQG T V+AAV GP +N + E + +E ++P+ G
Sbjct: 12 DKLREMQCKFNPLSRSDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
E+ E ++ L+ + P + S+ +Q + D G+ CA+N+AC AL+ G
Sbjct: 72 LPQVKERIREAAIRDVLELALLSEAYPRSKMSLQVQELEDRGSTDACALNSACLALLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDP---TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQG 188
+P+K+ A+ C E G +LDP L +Q FA+ ++L LVQ
Sbjct: 132 LPLKYSFAAVHCIINEQGEFVLDPELNETLRQQASFTFAFDSVDGNLL--------LVQ- 182
Query: 189 EPMEHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 231
T GA + + C+ RAASA++ DF R +L
Sbjct: 183 -----------TKGAFKIAQFNDIECI--CRAASAQIFDFYRSNL 214
>gi|167517347|ref|XP_001743014.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778113|gb|EDQ91728.1| predicted protein [Monosiga brevicollis MX1]
Length = 256
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 8/193 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR PNQLR L+C ++ A GSA + G T V +V+G + ++E P++++IEV
Sbjct: 12 REDGRAPNQLRELSCDFAVNSAADGSARFRLGQTCVEVSVFGFRGVPVRSELPDRSAIEV 71
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
++ GQ + E L+ + + P + +V VV DDG +L +A C
Sbjct: 72 SFRGVGGQRKVTDAAAENFLRECVDCALQVHEQPRSQCAVAAHVVQDDGGVLAALASATC 131
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AL+DAG+PM ++ V + G +LDP+ E Q +LS EG
Sbjct: 132 LALLDAGLPMTNVFVGVSSAFDAKGGFLLDPSATEAQASANATV------VLSCGAEGGR 185
Query: 185 LVQGEPMEHGIIT 197
++ E +HG +T
Sbjct: 186 VLACE--QHGPLT 196
>gi|255085244|ref|XP_002505053.1| predicted protein [Micromonas sp. RCC299]
gi|226520322|gb|ACO66311.1| predicted protein [Micromonas sp. RCC299]
Length = 168
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 2/129 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTK--VLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
+R + + L RA GSA W QG + V+AAVYGP + E+ +K +IEV W+P G
Sbjct: 1 MRQMKTERNPLQRAEGSARWEQGTHRSVVMAAVYGPTQTQARKEDVDKLAIEVCWRPPFG 60
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
+ + E L+RTL+ I + P V++QV+ DGA+ CA+NA C AL+DAG
Sbjct: 61 LQTPADVDAERALRRTLEQIVLTAKYPRLGLRVVVQVISADGAVEACAMNATCHALMDAG 120
Query: 132 IPMKHLAVA 140
+ M VA
Sbjct: 121 VEMFGTLVA 129
>gi|391326561|ref|XP_003737781.1| PREDICTED: exosome complex component RRP41-like [Metaseiulus
occidentalis]
Length = 247
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 17/205 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKK-------- 53
R DGR ++R L CS + +A GSA +G+T VLAAVYGP + G K
Sbjct: 13 RVDGRRAQEMRKLDCSLGVFAQADGSAYVKEGNTVVLAAVYGPHEVRGGRVKALHDRAVV 72
Query: 54 NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
N A+ + R + E + L++T ++ + + P + ++V+ DG
Sbjct: 73 NCQFSAATFSTAERKRRPRGDTKSVEMTLHLQQTFETAILTKLYPRCQIDIFVEVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE-QKMKGFAYLV 170
++L AINAA ALVDAGI ++ +C CSA + +LD LEE QK G +
Sbjct: 133 SILSVAINAATMALVDAGIGLRDY---VCACSAGVFNDAALLDLNNLEESQKGTGLTVAI 189
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGI 195
P + VL + SS + + + I
Sbjct: 190 LPKTERIVLVDMSSKIHSDHVSKTI 214
>gi|321465387|gb|EFX76389.1| hypothetical protein DAPPUDRAFT_213979 [Daphnia pulex]
Length = 246
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 92/193 (47%), Gaps = 19/193 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR PN+LR + CS I +A GSA QG+TKVLAAVYGP G+K +KA +
Sbjct: 13 RIDGRKPNELRRIRCSLGIFSQADGSAYLEQGNTKVLAAVYGPHEIRGSKSKALHDKAFV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T +G+ ++ E L+ T + + P + + ++V+ DG
Sbjct: 73 NCQYSTATFSMGERKRRPRGDRKSTEMSTHLEETFAAAIRTELYPRSQIDIFVEVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+NAA ALVDAG+P+K V+ C S ++D +E P
Sbjct: 133 GNYTACVNAAMMALVDAGVPLKDTVVS-CTASLVKDVPLVDVNHVERSGGS-------PE 184
Query: 174 SILSVLPEGSSLV 186
++S+LP +V
Sbjct: 185 LVVSILPHSGEIV 197
>gi|291233253|ref|XP_002736568.1| PREDICTED: exosome component 4-like [Saccoglossus kowalevskii]
Length = 246
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK--AGTKKNENPEKASI 62
RADGR P++LR + C + +A GSA QG+TKVLA VYGP G + +K +
Sbjct: 13 RADGRRPHELRKIRCRMGVFRQADGSAYIEQGNTKVLATVYGPHEITGGRSKALHDKVLL 72
Query: 63 EVIWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G + +E + L+RT Q+ + + P + + +QV+ DG
Sbjct: 73 NCQYSMATFSTGERKTRPKGDRRSQEMSMNLRRTFQAAILTHLYPRSQIDIYVQVLQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+NAA A++DAGIPM+ A C S ++D + LEE + P
Sbjct: 133 GNYCACVNAATLAVIDAGIPMRDYVCA-CTSSLLEDTPVVDISYLEES-------VGSPE 184
Query: 174 SILSVLPEGSSLV 186
++++LP+ +V
Sbjct: 185 MVVALLPKSEQIV 197
>gi|328769717|gb|EGF79760.1| hypothetical protein BATDEDRAFT_19845 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 87/166 (52%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR P +LR L + A GSA G+TK +AAVYGPK + + + ++A I
Sbjct: 25 RVDGRRPPELRRLLTKVGLFTNADGSAYIELGNTKCVAAVYGPKESKIQSAQLHDRAVIN 84
Query: 64 VIWK-------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + R ++ + ++ EI I+KRT + + + + P + + +Q++ DG
Sbjct: 85 VEYNVASFSSGERKLKMKRDKRMLEIASIIKRTFEPVVMTSTFPRSEIDIYVQILQLDGG 144
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
L AINA C A++DAGIPM +A C +G +LD +EE
Sbjct: 145 ALHAAINATCLAMIDAGIPMSDYVIA-CSAGFSNGSALLDLNYIEE 189
>gi|413949053|gb|AFW81702.1| hypothetical protein ZEAMMB73_884899 [Zea mays]
Length = 405
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 7/64 (10%)
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G+ E+EYE+ LKRTLQSIC+LT++PNTTTSV++Q LLPCAINA+CAAL AGIP
Sbjct: 109 GRQEREYEMTLKRTLQSICLLTVHPNTTTSVVLQ-------LLPCAINASCAALAFAGIP 161
Query: 134 MKHL 137
MKHL
Sbjct: 162 MKHL 165
>gi|312375907|gb|EFR23155.1| hypothetical protein AND_13423 [Anopheles darlingi]
Length = 246
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + C + + GSA QG+TKVLAAVYGP + K N E+A +
Sbjct: 10 RLDGRRANELRHIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQASSKKSNHEEAIVNC 69
Query: 65 IWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G+ +K E I LK+ L + + + P + V I+V+ DG
Sbjct: 70 QYSMATFSTGERKKRPRGDRKSQEMTIHLKQALSAAIKMELYPRSQIDVYIEVLQADGGN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++NAA AL+DAGI +K A A ++D + LEE
Sbjct: 130 YCASVNAATLALIDAGICLKEYVCACTASLANGNVPLMDVSHLEE 174
>gi|296243060|ref|YP_003650547.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
gi|296095644|gb|ADG91595.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera
aggregans DSM 11486]
Length = 249
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 88/166 (53%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ +L A+GSA G TKVLAAV+GP+ ++ P++A++
Sbjct: 20 RLDGRRLDELRPVKIKVGVLKNANGSALVEYGGTKVLAAVFGPREALPRHIALPDRATLR 79
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S+ P T+ + I+V+ DG
Sbjct: 80 VRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFSEQFPRTSIDIFIEVLQADGGT 139
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL DAGIPMK L + + E G +LD ++LE++
Sbjct: 140 RTAGLTAASVALADAGIPMKDLVIGVAVGKIE-GNLVLDISELEDE 184
>gi|116754659|ref|YP_843777.1| exosome complex exonuclease Rrp41 [Methanosaeta thermophila PT]
gi|116666110|gb|ABK15137.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosaeta
thermophila PT]
Length = 245
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 106/242 (43%), Gaps = 40/242 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP------------KAGTK 52
R DGR ++LRP+ +L RA GS GD KV+AAVYGP +A +
Sbjct: 12 RLDGRRFDELRPIKMEVGVLKRADGSCYMEMGDNKVIAAVYGPREVHPRHLQEVNRAIIR 71
Query: 53 KNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
N S+E +P G + YE+ + + L+ + + + P + + ++V+
Sbjct: 72 YRYNMASFSVEERRRP-----GPDRRSYELSKVSREALEPVILTSYFPKSVIDIFVEVLQ 126
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
D INAA AL DAGIPM+ L V+ C G +LDP K E+ F
Sbjct: 127 ADAGTRTAGINAASVALADAGIPMRSL-VSSCAAGKVDGQIVLDPMKDED----NFGQAD 181
Query: 171 FPNSILSVLPEGS-SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
P +++ P G +L+Q G ++ D++ +E + ++ RR
Sbjct: 182 MP---IAITPTGEITLLQ------------MDGILTRDEFRQAMELAKKGCQEIYKIQRR 226
Query: 230 SL 231
L
Sbjct: 227 VL 228
>gi|429216660|ref|YP_007174650.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
gi|429133189|gb|AFZ70201.1| archaeal exosome-like complex exonuclease 1 [Caldisphaera
lagunensis DSM 15908]
Length = 243
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P+++RP+ +L A GSA G T+VLAAVYGPK K P++A++ V
Sbjct: 17 RLDGRKPDEVRPIKMQVGVLTNADGSALVEYGLTRVLAAVYGPKESQKSMLLPDRATLRV 76
Query: 65 IW--KPRTGQIGK----PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ P + + K +E E+ +L+ +L+ + I P T+ V I+V+ DG
Sbjct: 77 RYHMAPFSTEERKNPAPTRRELELSKVLRESLEPVVITEYFPRTSIDVFIEVLQSDGGTR 136
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AA AL DAGIPM+ L + ++ I+D ++E+
Sbjct: 137 TVGATAASLALADAGIPMRALVAGVAIGKVDN-VLIVDLNEVED 179
>gi|294464242|gb|ADE77635.1| unknown [Picea sitchensis]
Length = 243
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P ++R L ++ +A GSA + G+TKV+AAVYGP KN+ P++A +
Sbjct: 10 RLDGRRPLEMRQLHAQLGVVDKADGSAIFEMGNTKVIAAVYGPHEVQNKNQQLPDQALVR 69
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ +PR + + E +++++T+++ + + P T + +QV+ DG
Sbjct: 70 CEYSMANFSTGDRPRRSKGDRRATEISLVIRQTMEATILTHLMPRTQIDIFVQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL DAGIPM L V C + +LD +E+
Sbjct: 130 TRSACINAATLALADAGIPMCDL-VTSCAAGYLNSTPLLDMNYMED 174
>gi|126465758|ref|YP_001040867.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
gi|126014581|gb|ABN69959.1| ribosomal RNA-processing protein RRP41/SKI6 [Staphylothermus
marinus F1]
Length = 240
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR PN+LRP+ +L A GSA G TKV+AAVYGP+ ++ P++A I
Sbjct: 13 RHDGRKPNELRPIKMDVGVLKNADGSAYVEYGGTKVIAAVYGPREVYPRHLALPDRALIR 72
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ ++ + E E +++ L+S+ + P TT V I+V+ DG
Sbjct: 73 CRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL DAGIPM+ L + + G +LD ++E++
Sbjct: 133 RTTGLTAASLALADAGIPMRDLVAGVAVGKVD-GVLVLDIDEVEDE 177
>gi|241119397|ref|XP_002402568.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215493342|gb|EEC02983.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 246
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 17/202 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEK--- 59
R DGR PN+ R + C + +A GSA QG+ KVLAAVYGP G + ++
Sbjct: 13 RLDGRKPNEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 60 ------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
A+ + R + K +E + +++T ++ + + P + + ++V+ DG
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE-QKMKGFAYLV 170
L +NAA AL+DAGI +K +C CS G ++D + +EE + V
Sbjct: 133 GTLSVCVNAATLALIDAGIALKDY---VCACSVGFIDGVPLVDISSIEESNRGPELTVAV 189
Query: 171 FPNSILSVLPEGSSLVQGEPME 192
P S VL E SS V + +E
Sbjct: 190 LPKSQQIVLLEMSSRVHVDNLE 211
>gi|15233167|ref|NP_191721.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|186511299|ref|NP_001118878.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|6164938|gb|AAF04590.1|AF191741_1 exonuclease RRP41 [Arabidopsis thaliana]
gi|6850853|emb|CAB71092.1| exonuclease RRP41 [Arabidopsis thaliana]
gi|26452705|dbj|BAC43435.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|28973161|gb|AAO63905.1| putative exonuclease RRP41 [Arabidopsis thaliana]
gi|332646711|gb|AEE80232.1| exosome complex component RRP41 [Arabidopsis thaliana]
gi|332646712|gb|AEE80233.1| exosome complex component RRP41 [Arabidopsis thaliana]
Length = 241
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 21/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N++R + ++ +A GSA + G+TKV+AAVYGP+ K++ + V
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69
Query: 65 IWKPRTGQIGKPEK----------EYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ + Q ++ E +++++T+++ CILT + P++ + +QV+ DG
Sbjct: 70 LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEA-CILTELMPHSQIDIFLQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ LAV+ CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVS---CSA--GYLNSTPLLDLNYVED 174
>gi|297821020|ref|XP_002878393.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
gi|297324231|gb|EFH54652.1| hypothetical protein ARALYDRAFT_486650 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 21/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N++R + ++ +A GSA + G+TKV+AAVYGP+ K++ + V
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69
Query: 65 IWKPRTGQIGKPEK----------EYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ + Q ++ E +++++T+++ CILT + P++ + +QV+ DG
Sbjct: 70 LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEA-CILTELMPHSQIDIFLQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ LAV+ CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVS---CSA--GYLNSTPLLDLNYVED 174
>gi|432906534|ref|XP_004077577.1| PREDICTED: exosome complex component RRP46-like [Oryzias latipes]
Length = 185
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 51/226 (22%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR C S+L R GSAS+ QGDT V+A VYGP E ++A++EV+ +P+ G
Sbjct: 11 LREFGCEQSLLSRPDGSASFVQGDTSVMAGVYGPAEVKVSKEIYDRATLEVLVQPKVGLP 70
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T + +LT++P ++ ++++QV+HDDG+LL C
Sbjct: 71 SVRERSQEQCVRETCEEALLLTLHPRSSLTLVLQVLHDDGSLLSC--------------- 115
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
Y D T LE + + FA + E
Sbjct: 116 ----------------YHTPDLTLLESRALMTFAI--------------------DSKER 139
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++ S T G+ SV + C+ + AS ++ F R S++ + L
Sbjct: 140 KVMMSSTKGSFSVHELQQCVAVSQRASERIFQFYRDSVRRRYSKSL 185
>gi|66802544|ref|XP_635144.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
gi|60463463|gb|EAL61648.1| hypothetical protein DDB_G0291328 [Dictyostelium discoideum AX4]
Length = 247
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP-EKASIE 63
R DGR N+LR + I RA GSA + QG+TK++AAVYGP+ + + ++A ++
Sbjct: 13 RIDGRRANELRRINVEMGIFKRADGSAYYEQGNTKIIAAVYGPREISVSGKGVFDRAVVK 72
Query: 64 ----------VIWKPRTGQIG-KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
KP+ G + E ++K+ +S + P + ++ +QV+ D
Sbjct: 73 CEFSSSSFSTTERKPQQKTKGDRVTTEIANLVKQAFESTIHTHLYPRSQINIYLQVLQSD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLV 170
G L AINA+ AL+DAGI MK IC CS G +LD +EE+
Sbjct: 133 GGLKAAAINASTLALIDAGISMKDF---ICACSTSCIDGIAVLDLNNIEERSGG------ 183
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAK----LSDF 226
P+ +LS+ +P G+I+ + D + LE G K LSD+
Sbjct: 184 -PDCLLSI----------QPQIGGVISLNMDSKVPQDLFESVLELGEKGCKKIFSILSDY 232
Query: 227 LRR 229
+++
Sbjct: 233 VKK 235
>gi|212721602|ref|NP_001131612.1| RNase PH homolog [Zea mays]
gi|194692034|gb|ACF80101.1| unknown [Zea mays]
gi|413948419|gb|AFW81068.1| exosome complex exonuclease RRP41 isoform 1 [Zea mays]
gi|413948420|gb|AFW81069.1| exosome complex exonuclease RRP41 isoform 2 [Zea mays]
gi|413948421|gb|AFW81070.1| exosome complex exonuclease RRP41 isoform 3 [Zea mays]
gi|413948422|gb|AFW81071.1| exosome complex exonuclease RRP41 isoform 4 [Zea mays]
Length = 242
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ K + N ++A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P++ + +QV+ DG
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ +A + CSA GY +LD LE+
Sbjct: 131 GTRSACINAATLALADAGIPMRDIATS---CSA--GYLCSTPLLDLNYLED 176
>gi|209877631|ref|XP_002140257.1| 3' exoribonuclease family protein [Cryptosporidium muris RN66]
gi|209555863|gb|EEA05908.1| 3' exoribonuclease family protein, putative [Cryptosporidium muris
RN66]
Length = 239
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/252 (28%), Positives = 114/252 (45%), Gaps = 29/252 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+ R DGR +LRP+ + H GS+ +S G ++ A + P+ + N K+
Sbjct: 1 MEI-RLDGRQYLELRPINIRIGVFHGLSGSSDFSMGLSRATAVAWQPE---ETNNIRGKS 56
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
++VI +P +G G EK E+ R L+ I P SV IQV+ DG + P
Sbjct: 57 YLDVIIRPNSGSTGDTEKLLELYCTRVLEDIIDFKQIPRCIVSVAIQVISQDGPIFPICF 116
Query: 121 NAACAALVDAGIPMKHLAVAICCCSA-------ESGYCILDPTKLEEQKMKGFAYLVF-- 171
NAA AL+DAGIPM +AI A S + I+DP E K ++ +
Sbjct: 117 NAAVLALLDAGIPMTTTPLAISIAEACTYQLNDLSKHIIIDPNGEEIDKCISCSHYIVSS 176
Query: 172 -PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
N I++ L + +G T +T+ D F + A + L +++R
Sbjct: 177 RSNQIIACL-----IAKG--------TGITYNDKIYD--FDSISIAIAGTKVLCNYIRNY 221
Query: 231 LQSKLPGDLSKA 242
LQ L ++ K+
Sbjct: 222 LQKTLLDNVGKS 233
>gi|195622232|gb|ACG32946.1| exosome complex exonuclease RRP41 [Zea mays]
Length = 242
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ K + N ++A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVVRADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P++ + +QV+ DG
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ +A + CSA GY +LD LE+
Sbjct: 131 GTRSACINAATLALADAGIPMRDIATS---CSA--GYLCSTPLLDLNYLED 176
>gi|195435372|ref|XP_002065667.1| GK15569 [Drosophila willistoni]
gi|194161752|gb|EDW76653.1| GK15569 [Drosophila willistoni]
Length = 251
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP KN++ E
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKNKSSESNDVII 73
Query: 59 -----KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+A+ + + + +E+++ L++ L + + P + V ++V+ DG
Sbjct: 74 NCQYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A A+NAA AL+DAGI + VA ++S + D +++EE
Sbjct: 134 ANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQVEE 180
>gi|242022707|ref|XP_002431780.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517105|gb|EEB19042.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 191
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 77/128 (60%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
++R + C L R GSA ++ GDT L+AVYGP + E A++EV++K + G
Sbjct: 5 EMRNIHCELDPLSRPDGSALFALGDTMTLSAVYGPAEVRPQKLLTENATVEVLFKSKNGV 64
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
+K E+ L ++ + + +P T+ S+I+Q + D G LL C++N+AC AL++AGI
Sbjct: 65 PSISDKIKEVSLNNICKTAILSSQHPRTSISIIVQEMQDYGGLLACSVNSACLALLNAGI 124
Query: 133 PMKHLAVA 140
P+K++ A
Sbjct: 125 PLKYVFAA 132
>gi|284161628|ref|YP_003400251.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
gi|284011625|gb|ADB57578.1| exosome complex exonuclease 1 [Archaeoglobus profundus DSM 5631]
Length = 244
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 92/186 (49%), Gaps = 13/186 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR+ +LRP+ +L+RA GS G KV+AAVYGP+ K+ E+P KA I
Sbjct: 12 RLDGRDFEELRPIKIEAGVLNRADGSCYLEMGGNKVVAAVYGPREVHPKHLEDPSKAIIR 71
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + L+ + + + P + + ++V+ D
Sbjct: 72 YRYSMAPFSVEERKRPGPDRRSIEISKVSREALEPVIMKELFPRSAIDIFVEVLQADAGS 131
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFP 172
+NAA AL+DAGIPMK + ++ + G +LDP K E+ + FA+L+
Sbjct: 132 RTACLNAASVALIDAGIPMKGMVTSVAVAKVD-GILVLDPMKEEDNYGEADIPFAFLIRN 190
Query: 173 NSILSV 178
I S+
Sbjct: 191 GKIESI 196
>gi|405971078|gb|EKC35934.1| Exosome complex exonuclease RRP41 [Crassostrea gigas]
Length = 245
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 27/228 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEK--- 59
R DGR ++LR + C + +A GSA QG+TKVLAAVYGP G++ +K
Sbjct: 13 RIDGRRSHELRKIQCKLGVFSQADGSAYVEQGNTKVLAAVYGPHEIRGSRSKLLQDKVLV 72
Query: 60 ------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
A+ + R + + +E + L++T + + +++P + + ++V+ DG
Sbjct: 73 NCQYSMATFSTSERKRRPRGDRKSQEMTMHLQQTFNAAILTSLHPRSQIDIFVEVLQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVF 171
++NAA A++DAGIPMK +C CSA I+D LEE
Sbjct: 133 GNYCASVNAATLAVIDAGIPMKDY---VCACSASYLGDSPIVDINYLEESSGS------- 182
Query: 172 PNSILSVLPEGSSLV----QGEPMEHGIITSVTHGAMSVDDYFHCLER 215
P ++VLP+ +V G E + V D + L+R
Sbjct: 183 PEITVAVLPKSEQIVFLEMNGRLHEDNLSKVVDMAVKGCKDVYGVLDR 230
>gi|326429591|gb|EGD75161.1| hypothetical protein PTSG_06814 [Salpingoeca sp. ATCC 50818]
Length = 241
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 90/194 (46%), Gaps = 19/194 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------- 57
R DGR N+LR + + + A GSA + QGDTKV+A V GPK G K +
Sbjct: 11 REDGRRANELRRVEANVGMFPHADGSAYFQQGDTKVVAIVNGPKQGVGKAGDAGKVVCDF 70
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
E A+ + + ++ + E + T +S + + P + + +QV+ DG +L
Sbjct: 71 EMAAFSTTQRRKPLRLDRKNAELGSKIASTFESAIMTDLYPRSQIEISVQVLQADGGVLA 130
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSI 175
AINA AL+DAG+ M +C C+A G +LD E P
Sbjct: 131 VAINAVTLALMDAGVAMTDF---VCACTASVIDGTNVLDINHYEASAQG-------PELT 180
Query: 176 LSVLPEGSSLVQGE 189
++VLP S++V E
Sbjct: 181 IAVLPSSSTIVMAE 194
>gi|242091341|ref|XP_002441503.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
gi|241946788|gb|EES19933.1| hypothetical protein SORBIDRAFT_09g028170 [Sorghum bicolor]
Length = 242
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 91/171 (53%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L I+ RA GSA + G+T+V+AAVYGP+ K + N +A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGIVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P++ + +QV+ DG
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ + + CSA GY +LD LE+
Sbjct: 131 GTRSACINAATLALADAGIPMRDI---VTSCSA--GYLCSTPLLDLNYLED 176
>gi|11498104|ref|NP_069329.1| exosome complex exonuclease Rrp41 [Archaeoglobus fulgidus DSM 4304]
gi|29336576|sp|O29757.1|ECX1_ARCFU RecName: Full=Probable exosome complex exonuclease 1
gi|83754325|pdb|2BA0|F Chain F, Archaeal Exosome Core
gi|83754326|pdb|2BA0|E Chain E, Archaeal Exosome Core
gi|83754327|pdb|2BA0|D Chain D, Archaeal Exosome Core
gi|83754334|pdb|2BA1|D Chain D, Archaeal Exosome Core
gi|83754335|pdb|2BA1|E Chain E, Archaeal Exosome Core
gi|83754336|pdb|2BA1|F Chain F, Archaeal Exosome Core
gi|2650133|gb|AAB90744.1| ribonuclease PH (rph) [Archaeoglobus fulgidus DSM 4304]
Length = 258
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ S+L RA GS G KV+AAV+GP+ ++ ++P KA I
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + K +++ + + P + + ++V+ D
Sbjct: 77 YRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFP 172
+NAA ALVDAG+PMK + ++ A+ G +LDP K E+ + FA+L+
Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDNFGEADMPFAFLIRN 195
Query: 173 NSILSV 178
I S+
Sbjct: 196 GKIESI 201
>gi|346466185|gb|AEO32937.1| hypothetical protein [Amblyomma maculatum]
Length = 284
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEK--- 59
R DGR P++ R +AC + +A GSA QG+ KVLAAVYGP G++ ++
Sbjct: 51 RLDGRKPSEQRKIACRLGVFGQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVIV 110
Query: 60 ------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
A+ + + R + K +E + +++ ++ + + P + + ++ + DG
Sbjct: 111 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVETLQSDG 170
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVF 171
L INAA AL+DAGI +K +C CS G ++D + LEE M+G
Sbjct: 171 GTLSVCINAATLALIDAGIALKDY---VCACSVGFVEGVPLVDISNLEE-SMRG------ 220
Query: 172 PNSILSVLPEGSSLV 186
P ++VLP+ +V
Sbjct: 221 PELTVAVLPKSQEMV 235
>gi|357132600|ref|XP_003567917.1| PREDICTED: exosome complex component RRP41-like [Brachypodium
distachyon]
Length = 242
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 93/171 (54%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ +++ N ++A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVSRADGSALFEMGNTRVIAAVYGPREVQNRSQQVNSKEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P++ + +QV+ DG
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIFVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ + + CSA GY +LD +E+
Sbjct: 131 GTRSACINAATLALADAGIPMRDI---VTSCSA--GYLCSSPLLDLNYIED 176
>gi|297527572|ref|YP_003669596.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
gi|297256488|gb|ADI32697.1| exosome complex exonuclease 1 [Staphylothermus hellenicus DSM
12710]
Length = 240
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A GSA G TK++AAVYGP+ ++ P++A I
Sbjct: 13 RHDGRRPDELRPIKMDVGVLKNADGSAYVEYGGTKIIAAVYGPREVYPRHLALPDRALIR 72
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ ++ + E E +++ L+S+ + P TT V I+V+ DG
Sbjct: 73 CRYHMAPFSTSDRKSPAPSRREIELSKVIREALESLVFSELYPRTTIDVFIEVLQADGGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL DAGIPM+ L + + G +LD ++E++
Sbjct: 133 RTTGLTAASLALADAGIPMRDLVAGVAAGKVD-GVLVLDIDEVEDE 177
>gi|242088177|ref|XP_002439921.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
gi|241945206|gb|EES18351.1| hypothetical protein SORBIDRAFT_09g022550 [Sorghum bicolor]
Length = 242
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ K + N +A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSNEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P + + +QV+ DG
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIYVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ + + CSA GY +LD LE+
Sbjct: 131 GTRSACINAATLALADAGIPMRDI---VTSCSA--GYLCSTPLLDLNYLED 176
>gi|288930697|ref|YP_003434757.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
gi|288892945|gb|ADC64482.1| exosome complex exonuclease 1 [Ferroglobus placidus DSM 10642]
Length = 245
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 27/193 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKA--- 60
R DGR P++LRP+ +L A GS G KV+AAVYGP K K +P +A
Sbjct: 13 RIDGRLPDELRPIKIEAGVLKNADGSCYLEMGKNKVMAAVYGPRKVQPKHLADPTQAIVR 72
Query: 61 --------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
S+E +P R+ +I K +E L+SI + + P ++ + ++V
Sbjct: 73 YRYNMAPFSVEERKRPGPDRRSVEISKVSRE-------ALESIIMKELFPRSSIDIFVEV 125
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG--- 165
+ D +NAA ALVDAGIPMK + ++ + G +LDP K E+ +
Sbjct: 126 LQADAGSRTACLNAASVALVDAGIPMKGIITSVAVAKVD-GVLVLDPMKEEDNYGEADIP 184
Query: 166 FAYLVFPNSILSV 178
FA+ + I S+
Sbjct: 185 FAFFIRNGKIESI 197
>gi|427781741|gb|JAA56322.1| Putative exosome component 4 [Rhipicephalus pulchellus]
Length = 246
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 23/195 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEK--- 59
R DGR P + R +AC + +A GSA QG+ KVLAAVYGP G++ ++
Sbjct: 13 RLDGRKPFEQRKIACRLGVFTQADGSAYIEQGNAKVLAAVYGPHEPRGSRSRSFHDRVLV 72
Query: 60 ------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
A+ + + R + K +E + +++ ++ + + P + + ++V+ DG
Sbjct: 73 NCQFSMATFSTLERKRRPRGDKKSQEMTLHIQQAFEASILTQLYPRSQIDIFVEVLQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVF 171
L INAA AL+DAGI +K +C CS G ++D + LEE ++G
Sbjct: 133 GTLSVCINAATLALIDAGIALKDY---VCACSVGFVDGVPLVDISHLEE-SLRG------ 182
Query: 172 PNSILSVLPEGSSLV 186
P ++VLP+ +V
Sbjct: 183 PELTVAVLPKSQQMV 197
>gi|295322007|pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322008|pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322009|pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
gi|295322019|pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322020|pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
gi|295322021|pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ S+L RA GS G KV+AAV+GP+ ++ ++P KA I
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + K +++ + + P + + ++V+ D
Sbjct: 77 YRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFP 172
+NAA ALVDAG+PMK + ++ A+ G +LDP K E+ + FA+L+
Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDNFGEADMPFAFLIRN 195
Query: 173 NSILSV 178
I S+
Sbjct: 196 GKIESI 201
>gi|320101499|ref|YP_004177091.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
gi|319753851|gb|ADV65609.1| ribosomal RNA-processing protein RRP41/SKI6 [Desulfurococcus
mucosus DSM 2162]
Length = 243
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 9/142 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LRP+ + +L A+GSA G+TK LAAVYGP+ K+ + P++A +
Sbjct: 14 RVDGRRPDELRPVRIAIGVLKNANGSALVEYGNTKALAAVYGPREAMPKHISLPDRAVLR 73
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S+ T P + V I+++ DG
Sbjct: 74 VRYHMAPFSTSERKSPAPSRREIELSKVIREALESVVFTTQYPRASIDVFIEILQADGGT 133
Query: 116 LPCAINAACAALVDAGIPMKHL 137
+ AA AL DAGIPMK L
Sbjct: 134 RTAGLTAASLALADAGIPMKDL 155
>gi|440904353|gb|ELR54878.1| Exosome complex exonuclease RRP41 [Bos grunniens mutus]
Length = 244
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 15/168 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR +LR + + +A GSA QG+TK LA VYGP +A ++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASSRARALPDRALVN 72
Query: 64 VIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 CQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 TYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 177
>gi|313226557|emb|CBY21703.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---AGTKKNENPEKAS 61
R DGR + R + + A GSA QG+TKVLAAV+GP+ A + EK
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCI 69
Query: 62 IEVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
++V + + R + K +E + LK+T ++ + T+ P + S+ ++V+ D
Sbjct: 70 VDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQAD 129
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEE 160
G +NAA AL+DAGIP++ + A+ C A Y +LD EE
Sbjct: 130 GGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180
>gi|442749707|gb|JAA67013.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Ixodes ricinus]
Length = 246
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 96/202 (47%), Gaps = 17/202 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEK--- 59
R DGR P + R + C + +A GSA QG+ KVLAAVYGP G + ++
Sbjct: 13 RLDGRKPTEQRKIDCRLGVFSQADGSAYIEQGNAKVLAAVYGPHEPRGNRSRALHDRVLV 72
Query: 60 ------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
A+ + R + K +E + +++T ++ + + P + + ++V+ DG
Sbjct: 73 NCQFSMATFSTFERKRRPRGDKKSQEMTLHIQQTFEATILTQLYPRSQIDIFVEVLQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE-QKMKGFAYLV 170
L +NAA AL+DAGI +K +C CS G ++D + +EE + V
Sbjct: 133 GTLSVCVNAATLALIDAGIALKDY---VCACSVGFIDGVPLVDISSIEESNRGPELTVAV 189
Query: 171 FPNSILSVLPEGSSLVQGEPME 192
P S VL E SS V + +E
Sbjct: 190 LPKSQQIVLLEMSSRVHVDNLE 211
>gi|346469377|gb|AEO34533.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 27/252 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR +RP+ ++ +A GSA G+TKV+ +VYGP+ ++ + K I
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 63 EVIWKPRTGQIGKPEKE------YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + + QI + + +L+ L + L P +T V + V+ +DG L
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDGGAL 154
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK-------MKGFAYL 169
AI A AL DAGI M + + C + C+LDPT EE +GF +
Sbjct: 155 ASAITTAGLALADAGIDMYDVVIG-CSLRQDGSTCLLDPTYREETAPVGAENIDRGFGRM 213
Query: 170 VFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ + L + ++LVQ ++ + S M+ + L + D L +
Sbjct: 214 TL--AFMPALQQVAALVQDGDLDAATVVSDLRALMNACHEIYPL---------VQDVLIK 262
Query: 230 SLQSKLPGDLSK 241
L+ KL GD+ K
Sbjct: 263 DLEEKLEGDMKK 274
>gi|313240640|emb|CBY32963.1| unnamed protein product [Oikopleura dioica]
Length = 216
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 85/171 (49%), Gaps = 15/171 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---AGTKKNENPEKAS 61
R DGR + R + + A GSA QG+TKVLAAV+GP+ A + EK
Sbjct: 10 RFDGRRAAEFRKIQGRLGVFDHADGSAILQQGNTKVLAAVFGPRQPMASQHGAVSQEKCI 69
Query: 62 IEVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
++V + + R + K +E + LK+T ++ + T+ P + S+ ++V+ D
Sbjct: 70 VDVEYSRAAFASAERKRRARGDKKAQEISLSLKKTFEATILTTLYPRSAISIFVEVLQAD 129
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEE 160
G +NAA AL+DAGIP++ + A+ C A Y +LD EE
Sbjct: 130 GGDYAVCVNAATLALIDAGIPIRDVCCAVSCGVAIKDNVAYSLLDLAYSEE 180
>gi|75045923|sp|Q7YRA3.3|EXOS4_BOVIN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|33411774|emb|CAD58792.1| putative exosome complex exonuclease RRP41 [Bos taurus]
gi|296480766|tpg|DAA22881.1| TPA: exosome complex exonuclease RRP41 [Bos taurus]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|194215186|ref|XP_001917049.1| PREDICTED: LOW QUALITY PROTEIN: exosome complex component
RRP41-like [Equus caballus]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|330803994|ref|XP_003289985.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
gi|325079933|gb|EGC33511.1| hypothetical protein DICPUDRAFT_88747 [Dictyostelium purpureum]
Length = 247
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 97/189 (51%), Gaps = 20/189 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP-EKASIE 63
R DGR N+LR + + +RA GSA + QG+TK++AAVYGP+ + ++ ++A ++
Sbjct: 13 RIDGRRANELRRINIQMGVSNRADGSAYYEQGNTKIIAAVYGPREISVSGQSIFDRAIVK 72
Query: 64 VIW----------KPRTGQIG-KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ KP+ G + E ++K+ +S + P + ++ IQV+ D
Sbjct: 73 CEFATSSFSTTERKPQQKTKGDRATTEISNLVKQAFESTIQTHLYPRSQINIYIQVLQSD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G L AINA+ AL+DAGI MK A+ S G +LD +EE+ P
Sbjct: 133 GGLKAAAINASTLALIDAGISMKDFVCAV-STSCIDGVAVLDLNHIEERSGG-------P 184
Query: 173 NSILSVLPE 181
+ +LS+ P+
Sbjct: 185 DCLLSIQPQ 193
>gi|296227067|ref|XP_002759197.1| PREDICTED: exosome complex component RRP41 [Callithrix jacchus]
Length = 245
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|218201746|gb|EEC84173.1| hypothetical protein OsI_30553 [Oryza sativa Indica Group]
gi|222641142|gb|EEE69274.1| hypothetical protein OsJ_28540 [Oryza sativa Japonica Group]
Length = 242
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 90/171 (52%), Gaps = 20/171 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ K + N + A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKDALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P + + +QV+ DG
Sbjct: 71 RCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIDIFVQVLQADG 130
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INAA AL DAGIPM+ + + CSA GY +LD +E+
Sbjct: 131 GTRAACINAATLALADAGIPMRDI---VTSCSA--GYLCSTPLLDLNYIED 176
>gi|417397757|gb|JAA45912.1| Putative exosome complex component rrp41 [Desmodus rotundus]
Length = 245
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|9506689|ref|NP_061910.1| exosome complex component RRP41 [Homo sapiens]
gi|386780762|ref|NP_001248033.1| exosome component 4 [Macaca mulatta]
gi|114622153|ref|XP_001154573.1| PREDICTED: exosome complex component RRP41 isoform 1 [Pan
troglodytes]
gi|332264376|ref|XP_003281213.1| PREDICTED: exosome complex component RRP41 isoform 1 [Nomascus
leucogenys]
gi|397497366|ref|XP_003819483.1| PREDICTED: exosome complex component RRP41 [Pan paniscus]
gi|402912472|ref|XP_003918788.1| PREDICTED: exosome complex component RRP41 [Papio anubis]
gi|410042315|ref|XP_003951415.1| PREDICTED: exosome complex component RRP41 isoform 2 [Pan
troglodytes]
gi|410042317|ref|XP_003951416.1| PREDICTED: exosome complex component RRP41 isoform 3 [Pan
troglodytes]
gi|426360983|ref|XP_004047707.1| PREDICTED: exosome complex component RRP41-like [Gorilla gorilla
gorilla]
gi|426360993|ref|XP_004047712.1| PREDICTED: exosome complex component RRP41 [Gorilla gorilla
gorilla]
gi|441648333|ref|XP_004090877.1| PREDICTED: exosome complex component RRP41 isoform 2 [Nomascus
leucogenys]
gi|14285756|sp|Q9NPD3.3|EXOS4_HUMAN RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41; AltName: Full=p12A
gi|8927590|gb|AAF82134.1|AF281133_1 exosome component Rrp41 [Homo sapiens]
gi|7020801|dbj|BAA91279.1| unnamed protein product [Homo sapiens]
gi|12803867|gb|AAH02777.1| Exosome component 4 [Homo sapiens]
gi|119602572|gb|EAW82166.1| exosome component 4 [Homo sapiens]
gi|261860724|dbj|BAI46884.1| exosome component 4 [synthetic construct]
gi|325464127|gb|ADZ15834.1| exosome component 4 [synthetic construct]
gi|380785703|gb|AFE64727.1| exosome complex component RRP41 [Macaca mulatta]
gi|383414799|gb|AFH30613.1| exosome complex component RRP41 [Macaca mulatta]
gi|384943268|gb|AFI35239.1| exosome complex component RRP41 [Macaca mulatta]
gi|410250230|gb|JAA13082.1| exosome component 4 [Pan troglodytes]
gi|410290294|gb|JAA23747.1| exosome component 4 [Pan troglodytes]
gi|410331253|gb|JAA34573.1| exosome component 4 [Pan troglodytes]
Length = 245
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|348555838|ref|XP_003463730.1| PREDICTED: exosome complex component RRP41-like [Cavia porcellus]
Length = 245
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRAHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|15920655|ref|NP_376324.1| exosome complex exonuclease Rrp41 [Sulfolobus tokodaii str. 7]
Length = 247
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P+++RP+ +L A GSA + G+TKV+AAVYGPK ++ P++A +
Sbjct: 20 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 79
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V ++V+ D
Sbjct: 80 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGT 139
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 140 RLVSLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLD 177
>gi|452989450|gb|EME89205.1| hypothetical protein MYCFIDRAFT_111815, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 199
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 82/146 (56%), Gaps = 10/146 (6%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L RA GS+ +S G ++A V GP +++E PE+A+IEV ++P +G G E+ E I
Sbjct: 11 LSRADGSSVFSDGLYTIIAGVNGPVEVQRRDELPEEAAIEVNFRPSSGVGGPRERWLEGI 70
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIP 133
+++ L+SI ++ ++P T +QV + D A+LP INA+ A +D G+P
Sbjct: 71 MQKVLRSILLVHLHPRTLFQFTVQVSNQPQTQFRKTTGDIAILPALINASLTAAIDGGVP 130
Query: 134 MKHLAVAICCCSAESGYCILDPTKLE 159
+ A+ +SG ++DP++ E
Sbjct: 131 LATTTSAVLAVVTDSGKVVVDPSEKE 156
>gi|395860170|ref|XP_003802388.1| PREDICTED: exosome complex component RRP41 [Otolemur garnettii]
Length = 245
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|363548435|sp|Q975G8.2|ECX1_SULTO RecName: Full=Probable exosome complex exonuclease 1
gi|342306198|dbj|BAK54287.1| exosome core subunit Rrp41 [Sulfolobus tokodaii str. 7]
Length = 243
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P+++RP+ +L A GSA + G+TKV+AAVYGPK ++ P++A +
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V ++V+ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLD 173
>gi|427785073|gb|JAA57988.1| Putative exosomal 3'-5' exoribonuclease complex subunit rrp41
[Rhipicephalus pulchellus]
Length = 284
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 26/253 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +RP+ ++ +A GSA G+TKV+ +VYGP+ ++ + K I
Sbjct: 34 RHDGRQFGDVRPIFLKTGVVSQAKGSAYIEMGNTKVVCSVYGPREIARRKDFTFKGQINC 93
Query: 65 IWKPRTGQIGKPEKE----------YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ R Q P + Y +L++ L + L P +T V + V+ +DG
Sbjct: 94 EF--RFAQYSCPIRRQHLNDGEALHYSQLLEKALAPVVCLHKFPKSTVDVFVLVIENDGG 151
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE-QKMKGFAYLVFPN 173
L CAI A AL DAGI M + V C + C++DP+ EE ++ L F
Sbjct: 152 ALACAITTAGLALADAGIDMYDVVVG-CSLRQDGSTCLIDPSYNEEVAPVEAKDDLSFGR 210
Query: 174 SILSVLP---EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
L +P + ++LVQ ++ + S ++ + L + D L +
Sbjct: 211 MTLGFMPALQQVTALVQDGELDAASVVSDMKALIAASHQIYPL---------VQDVLLKE 261
Query: 231 LQSKLPGDLSKAE 243
++ KL G++ K E
Sbjct: 262 VEEKLNGEMKKME 274
>gi|17946442|gb|AAL49254.1| RE67757p [Drosophila melanogaster]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------- 57
R DGR P++LR + C + + GSA QG+TKVLAAVYGP K N+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA-KGNQTESVINCQY 72
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
+A+ + + + E+++ L++ L + + P + + ++V+ DDGA
Sbjct: 73 SQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA 132
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D ++ EE
Sbjct: 133 VALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEE 175
>gi|426235362|ref|XP_004011653.1| PREDICTED: exosome complex component RRP41 isoform 1 [Ovis aries]
gi|426235364|ref|XP_004011654.1| PREDICTED: exosome complex component RRP41 isoform 2 [Ovis aries]
Length = 245
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|198442889|ref|NP_001128332.1| exosome complex exonuclease RRP41 [Rattus norvegicus]
Length = 245
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|24584046|ref|NP_609618.2| Ski6, isoform A [Drosophila melanogaster]
gi|442627738|ref|NP_001260437.1| Ski6, isoform B [Drosophila melanogaster]
gi|7298022|gb|AAF53263.1| Ski6, isoform A [Drosophila melanogaster]
gi|201065945|gb|ACH92382.1| FI07225p [Drosophila melanogaster]
gi|440213772|gb|AGB92972.1| Ski6, isoform B [Drosophila melanogaster]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------- 57
R DGR P++LR + C + + GSA QG+TKVLAAVYGP K N+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA-KGNQTESVINCQY 72
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
+A+ + + + E+++ L++ L + + P + + ++V+ DDGA
Sbjct: 73 SQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA 132
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D ++ EE
Sbjct: 133 VALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEE 175
>gi|29611663|ref|NP_780608.1| exosome complex component RRP41 [Mus musculus]
gi|21759405|sp|Q921I9.3|EXOS4_MOUSE RecName: Full=Exosome complex component RRP41; AltName:
Full=Exosome component 4; AltName: Full=Ribosomal
RNA-processing protein 41
gi|15126706|gb|AAH12277.1| Exosome component 4 [Mus musculus]
gi|26354721|dbj|BAC40987.1| unnamed protein product [Mus musculus]
gi|74184267|dbj|BAE25679.1| unnamed protein product [Mus musculus]
gi|74198393|dbj|BAE39680.1| unnamed protein product [Mus musculus]
Length = 245
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|344307537|ref|XP_003422437.1| PREDICTED: exosome complex component RRP41-like [Loxodonta
africana]
Length = 245
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|198427597|ref|XP_002131069.1| PREDICTED: similar to LOC495942 protein [Ciona intestinalis]
Length = 247
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 15/154 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R DGR P++LR + C+ + +A GSA QG+TKVLAA+YGP +
Sbjct: 13 RFDGRKPSELRRVRCNMGVFTQADGSAYIEQGNTKVLAAIYGPHEASNNMRSRVCLDKCF 72
Query: 54 -NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
N +A + + + + K+ +K+T ++ + P + + +QV+H D
Sbjct: 73 INCEFSQAMFSSAERKKRSRGDRKGKDMSAHIKQTFEAAVRTQLYPRSQIDIYLQVLHSD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
G+L +NAA AL+DAGI MK +C CSA
Sbjct: 133 GSLYCACVNAATLALIDAGIAMKDY---VCACSA 163
>gi|122920908|pdb|2NN6|B Chain B, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 249
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 17 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 76
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 77 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 136
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 137 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 182
>gi|198433182|ref|XP_002130561.1| PREDICTED: similar to predicted protein isoform 2 [Ciona
intestinalis]
Length = 193
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 34/212 (16%)
Query: 41 LAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC----ILTI 96
+ AVYGP + + +KA +EV ++P+ G EK L+R +Q +C +L +
Sbjct: 1 MVAVYGPGDLKETKQEIDKALVEVDFRPKLGSPTVNEK----YLERFVQGVCENAIMLAL 56
Query: 97 NPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC---SAES----- 148
+P T ++I+Q++ D G+LL CAINA C AL DAG+ MKHL VA+ +ES
Sbjct: 57 HPRTAFAIIVQIMQDQGSLLSCAINAVCVALQDAGVSMKHLPVAVTVALRKESESELEDA 116
Query: 149 -GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 207
I++PT EE + VF + + ++ + G +
Sbjct: 117 TDVLIINPTIKEESESFSILTFVF-----------------DSVNKNLLCMHSQGPLLPK 159
Query: 208 DYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ CL+ + A+ ++ F R S+ K+ L
Sbjct: 160 QHERCLKAAKEATEEVLKFFRDSVTQKVAAGL 191
>gi|195351217|ref|XP_002042132.1| GM25757 [Drosophila sechellia]
gi|194123956|gb|EDW45999.1| GM25757 [Drosophila sechellia]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------- 57
R DGR P++LR + C + + GSA QG+TKVLAAVYGP K N+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQA-KGNQTESVINCQY 72
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
+A+ + + + E+++ L++ L + + P + + ++V+ DDGA
Sbjct: 73 SQATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYA 132
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D ++ EE
Sbjct: 133 VALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEE 175
>gi|148697598|gb|EDL29545.1| exosome component 4, isoform CRA_b [Mus musculus]
Length = 271
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 39 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 98
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 99 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 158
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 159 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 204
>gi|289595860|ref|YP_003482556.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|289533647|gb|ADD07994.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR PNQLRP+ +L RA GSA G K++AAVYGP +A K + ++A +
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVR 75
Query: 64 VIW---------KPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + R G P++ E ++ L+S+ + P T+ V I+V+
Sbjct: 76 ARYSMAPFSVDERKRPG----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQA 131
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
D I A AL DAGIPM+ L V C +LD K E+ F
Sbjct: 132 DAGTRVAGITVASLALADAGIPMRDLIVG-CAAGKIDDVVVLDLNKEEDN----FGQADV 186
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 214
P +I+ E + L M + +T+ AM + H ++
Sbjct: 187 PMAIMPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQ 229
>gi|194761146|ref|XP_001962793.1| GF15621 [Drosophila ananassae]
gi|190616490|gb|EDV32014.1| GF15621 [Drosophila ananassae]
Length = 249
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPE----- 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A KK E+ +
Sbjct: 14 RLDGRRPHELRHIQCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTESNDVIINC 73
Query: 59 ---KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+A+ + + + +E+++ L++ L + + P + V ++V+ DGA
Sbjct: 74 QYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDVYVEVLQADGAN 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + L VA +++ + D + +EE
Sbjct: 134 YAVALNAATLALIDAGICLNELIVACTASLSKNNIPLTDISHIEE 178
>gi|354491158|ref|XP_003507723.1| PREDICTED: exosome complex component RRP41-like [Cricetulus
griseus]
Length = 245
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALSDLSHVEE 178
>gi|355780009|gb|EHH64485.1| hypothetical protein EGM_17708 [Macaca fascicularis]
Length = 247
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA----GTKKNENPEKA 60
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAXIRGSRARALPDRA 72
Query: 61 SIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + T G+ ++ E + L++T ++ + ++P + + +QV+
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 132
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
DG +NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 DGGTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 180
>gi|67623169|ref|XP_667867.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54659037|gb|EAL37636.1| hypothetical protein Chro.40220 [Cryptosporidium hominis]
Length = 239
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 87/167 (52%), Gaps = 10/167 (5%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
V R DGR + ++ + I + +GSA +S G +KV+A V+ P+ + N K+ +
Sbjct: 2 VIRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASS---NKCKSYL 58
Query: 63 EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 122
EVI +PR GQ + K E + R + + S+ +Q+V +DG +LP INA
Sbjct: 59 EVILRPRIGQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSEDGPILPVCINA 118
Query: 123 ACAALVDAGIPMKHLAVAICCCSAESGY-------CILDPTKLEEQK 162
A AL+D+GIPM+ +AI + Y +LDPT+ E ++
Sbjct: 119 AVLALIDSGIPMEFFPLAISIAESSHFYGERDISHLMLDPTQSEFEQ 165
>gi|355698284|gb|EHH28832.1| hypothetical protein EGK_19355 [Macaca mulatta]
Length = 247
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 18/171 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA----GTKKNENPEKA 60
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASIRGSRARALPDRA 72
Query: 61 SIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + T G+ ++ E + L++T ++ + ++P + + +QV+
Sbjct: 73 LVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQA 132
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
DG +NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 DGGTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 180
>gi|124027456|ref|YP_001012776.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
gi|254782534|sp|A2BKC0.1|ECX1_HYPBU RecName: Full=Probable exosome complex exonuclease 1
gi|123978150|gb|ABM80431.1| ribonuclease PH [Hyperthermus butylicus DSM 5456]
Length = 255
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P QLRP+ +L A GSA G T+V+AAVYGP+ ++ P++A I
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIR 84
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + +T + E E +++ L+++ I + P T V ++V+ DG
Sbjct: 85 CRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGT 144
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
AI AA AL DAGI M+ L + + G +LD ++E+ + + S+
Sbjct: 145 RTAAITAASLALADAGIAMRDLVAGVAVGKVD-GVLVLDIDEIEDNYAEADMPVAMAPSL 203
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
VL L+Q +G ++ D++ LE R + + + +L+ K
Sbjct: 204 DKVL-----LLQ------------LNGVLTHDEFVKALELARKGIQVIYNLQKEALRKK 245
>gi|254168259|ref|ZP_04875105.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622768|gb|EDY35337.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 243
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR PNQLRP+ +L RA GSA G K++AAVYGP +A K + ++A +
Sbjct: 14 RIDGRLPNQLRPIKMEVGVLKRADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVR 73
Query: 64 VIW---------KPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + R G P++ E ++ L+S+ + P T+ V I+V+
Sbjct: 74 ARYSMAPFSVDERKRPG----PDRRAIELSKVISEALESVIFVEKYPRTSIDVYIEVLQA 129
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
D I A AL DAGIPM+ L V C +LD K E+ F
Sbjct: 130 DAGTRVAGITVASLALADAGIPMRDLIVG-CAAGKIDDVVVLDLNKEEDN----FGQADV 184
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 214
P +I+ E + L M + +T+ AM + H ++
Sbjct: 185 PMAIMPRTKEIALLQMDGDMSYEELTTAMDMAMDAAEKIHEMQ 227
>gi|357626143|gb|EHJ76339.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 214
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 18/171 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR PN+LR + C + + GSA QG+TKVLAAVYGP +K + E +
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQASKSKSSAEGVVVNC 72
Query: 65 IWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G + +E + L++ L + + P + + ++V+ DG
Sbjct: 73 QYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGGA 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------ILDPTKLEE 160
++NA+ AL+DAGIP+K +C CSA + +LD +EE
Sbjct: 133 YCASVNASTLALIDAGIPLK---AYVCSCSASMAWLDGVPEPLLDVGHVEE 180
>gi|409096213|ref|ZP_11216237.1| exosome complex exonuclease Rrp41 [Thermococcus zilligii AN1]
Length = 249
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LR + +L A GSA G+ K++AAVYGP+ K+ + PE A +
Sbjct: 17 RIDGRKKHELRQIRMEVGVLKNADGSAYIEWGNNKIIAAVYGPREIHPKHLQRPETAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++ LQ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIHGALQPALILEMFPRTVIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LDP K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIDGEIVLDPNKEED 180
>gi|346469375|gb|AEO34532.1| hypothetical protein [Amblyomma maculatum]
Length = 287
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/252 (26%), Positives = 111/252 (44%), Gaps = 27/252 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR +RP+ ++ +A GSA G+TKV+ +VYGP+ ++ + K I
Sbjct: 35 RHDGRQFGDIRPIFLKTGVVSQAKGSAYVEMGNTKVVCSVYGPREIARRKDFTYKGQINC 94
Query: 63 EVIWKPRTGQIGKPEKE------YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + + QI + + +L+ L + L P +T V + V+ +DG L
Sbjct: 95 EFRFAQYSCQIRRQHLNDSEALHFSQLLEEALAPVVCLHKFPKSTVDVFVYVLENDGGAL 154
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK-------MKGFAYL 169
AI A AL DAGI M + + C + C+LDPT EE +GF +
Sbjct: 155 ASAITTAGLALADAGIDMYDVVIG-CSLRQDGSTCLLDPTYREETAPVGAENIDRGFGRM 213
Query: 170 VFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
+ + L + ++LVQ ++ + S M+ + L + D L +
Sbjct: 214 TL--AFMPALQQVAALVQDGDLDAATVVSDLRVLMNACHEIYPL---------VQDVLIK 262
Query: 230 SLQSKLPGDLSK 241
L+ KL GD+ K
Sbjct: 263 DLEEKLEGDMKK 274
>gi|194902325|ref|XP_001980673.1| GG17562 [Drosophila erecta]
gi|190652376|gb|EDV49631.1| GG17562 [Drosophila erecta]
Length = 226
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 23/220 (10%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 66 LPQVKDRIREAAIRDVLELALLAEAHPRSKMSVQIQELEDRGSIDACALNCACLAMLIGG 125
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEP 190
+PMK+ A+ C E G +LDP + E + F +++ +
Sbjct: 126 LPMKYSFAAVHCIINEQGEYVLDPDQSETLHQRASFTFVL------------------DS 167
Query: 191 MEHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLR 228
+E ++ T GA + + CL RAASA++ F R
Sbjct: 168 VEGNLLLVQTKGAFKIAQFNDIECL--CRAASAEIFQFYR 205
>gi|14591333|ref|NP_143411.1| exosome complex exonuclease Rrp41 [Pyrococcus horikoshii OT3]
gi|29336584|sp|O59223.1|ECX1_PYRHO RecName: Full=Probable exosome complex exonuclease 1
gi|3257978|dbj|BAA30661.1| 249aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 249
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ +K + P++A +
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T+ V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>gi|327400938|ref|YP_004341777.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
gi|327316446|gb|AEA47062.1| exosome complex exonuclease 1 [Archaeoglobus veneficus SNP6]
Length = 246
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 114/249 (45%), Gaps = 44/249 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKA--- 60
R DGR+ ++LRP+ +L RA GS G K++AAVYGP+ ++ ++P +A
Sbjct: 14 RLDGRDFDELRPIKIEAGVLRRADGSCYIEMGKNKIVAAVYGPREVHPRHLQDPSRAIIR 73
Query: 61 --------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
S+E KP R+ +I K +E L+ + + + P + + ++V
Sbjct: 74 YRYNMAPFSVEERKKPGPDRRSIEISKVSRE-------ALEPVILKELFPRSGIDIFVEV 126
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG--- 165
+ D +NAA AL+DAG+ M+ + A+ E G +LDP K E+ +
Sbjct: 127 LQADAGTRTACLNAASVALIDAGVAMRGMITAVAVAKVE-GEIVLDPMKEEDNYGEADVP 185
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSD 225
FA+L+ I S+ +L+Q G MS ++ LE + + ++ +
Sbjct: 186 FAFLIRNGKIESI-----ALLQ------------MDGKMSAEEMKKALELAKKGAMQIYN 228
Query: 226 FLRRSLQSK 234
R ++ K
Sbjct: 229 IQREAIMRK 237
>gi|14601412|ref|NP_147949.1| exosome complex exonuclease Rrp41 [Aeropyrum pernix K1]
gi|29337017|sp|Q9YC03.1|ECX1_AERPE RecName: Full=Probable exosome complex exonuclease 1
gi|5105131|dbj|BAA80445.1| exosome complex exonuclease Rrp41 homologue [Aeropyrum pernix K1]
Length = 246
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P LRP+ ILH A GSA G T+VLAAVYGP+ ++ P++A++
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+ + + P T V ++V+ DG
Sbjct: 77 VRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ AA AL DAGIPM+ L + + G ++D +LE+
Sbjct: 137 RTAAVTAASLALADAGIPMRALVGGVAVGKIQ-GVLVVDVDELED 180
>gi|159040754|ref|YP_001540006.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
gi|157919589|gb|ABW01016.1| exosome complex exonuclease 1 [Caldivirga maquilingensis IC-167]
Length = 242
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 88/170 (51%), Gaps = 10/170 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P + RP+ +L A+GSA + G+T VLAAVYGP+ + P+KA +
Sbjct: 15 RVDGRLPEEHRPVTMQVGVLPNANGSALVAYGNTVVLAAVYGPREPIPRYITVPDKAVVR 74
Query: 64 VIWK--PRTGQIGK----PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + P + K +E EI ++K+ L+++ L P +T V ++V+ DG+
Sbjct: 75 VRYHMAPFSTDDRKNPAPTRREIEISKVVKQALETVVFLEQYPKSTIDVFLEVLQADGST 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
+I AA AL DAGIPM+ L V + I+D KLE+ G
Sbjct: 135 RVTSITAASLALADAGIPMRDLVVGVSVGKINDT-VIVDLNKLEDNYGDG 183
>gi|195031196|ref|XP_001988306.1| GH10637 [Drosophila grimshawi]
gi|193904306|gb|EDW03173.1| GH10637 [Drosophila grimshawi]
Length = 249
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPE----- 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A KK+E +
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKAKKSEGNDLIINC 73
Query: 59 ---KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+A+ + + + +E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QYSQATFSTAERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGAN 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++NAA AL+DAGI + VA ++S + D + +EE
Sbjct: 134 YAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEE 178
>gi|20093819|ref|NP_613666.1| exosome complex exonuclease Rrp41 [Methanopyrus kandleri AV19]
gi|29336819|sp|Q8TYC1.1|ECX1_METKA RecName: Full=Probable exosome complex exonuclease 1
gi|19886742|gb|AAM01596.1| Predicted exosome subunit, RNase PH [Methanopyrus kandleri AV19]
Length = 239
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 27/243 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR P+++RPL +L RA GSA G K++AAVYGP+ + + P++A +
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR 74
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + K L+ P T + ++V+ D
Sbjct: 75 FRYNMAPFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
I+AA AL DAGI M+ L VA C G +LDP E+ G+ P ++
Sbjct: 135 RCAGISAASVALADAGIEMRDL-VAACAAGKVEGKVVLDPMYYED----GYGEADVPLAM 189
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ P E I G M+ ++ ++ + + RR+L+ K
Sbjct: 190 M-------------PKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEKY 236
Query: 236 PGD 238
GD
Sbjct: 237 GGD 239
>gi|125773865|ref|XP_001358191.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
gi|54637926|gb|EAL27328.1| GA17911 [Drosophila pseudoobscura pseudoobscura]
Length = 234
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
D+ + ++LR + C + L R GS + QG T V++AV GP +N + + + +E
Sbjct: 5 DKPEHVAKDKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPVEVKTQNLSIDGSYLE 64
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
++P+ G E+ E ++ L+ + P + S+ IQ + D G++ CA+N+A
Sbjct: 65 CNYRPKAGLPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSA 124
Query: 124 CAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
C A++ G+P+K A+ C E G ILDP + E + + F
Sbjct: 125 CLAMLIGGLPLKCSFAAVHCIINEEGDYILDPDQRETENERASFTFAF------------ 172
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
+ +E ++ T G+ + ++ R+ASA++ F R S+
Sbjct: 173 -----DSLEGNLLLVQTKGSFKIAEFNDVESLCRSASAEILQFYRTSI 215
>gi|194860851|ref|XP_001969665.1| GG10219 [Drosophila erecta]
gi|190661532|gb|EDV58724.1| GG10219 [Drosophila erecta]
Length = 246
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 12/165 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNEN------- 56
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A +K E+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKSKHTESIINCQYS 73
Query: 57 -PEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
++ E ++PR + E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QATFSTAERKYRPRG---DRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGAN 130
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D + EE
Sbjct: 131 YAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEE 175
>gi|66357222|ref|XP_625789.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
gi|46226980|gb|EAK87946.1| RPR46-like RNAse PH domain [Cryptosporidium parvum Iowa II]
Length = 244
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
+ V R DGR + ++ + I + +GSA +S G +KV+A V+ P+ + N K+
Sbjct: 5 LMVIRYDGRTNLECGAISANVGIFNSLNGSAEFSIGLSKVIATVWRPEEASS---NKCKS 61
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+EVI +PR GQ + K E + R + + S+ +Q+V +DG +LP I
Sbjct: 62 YLEVILRPRIGQPQESHKLIEYHILRLFEKVIDFNSFSRCVISITLQIVSEDGPILPVCI 121
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGY-------CILDPTKLEEQK 162
NAA AL+D GIPM+ +A+ + Y +LDPT+ E ++
Sbjct: 122 NAAVLALIDLGIPMEFFPLAVSIAESSHFYGERDISHLMLDPTQSEFEQ 170
>gi|308512717|gb|ADO33012.1| exosome complex exonuclease RRP41 [Biston betularia]
Length = 245
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 12/155 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR PN+LR + C + + GSA QG+TKVLAAVYGP +K + E +
Sbjct: 9 RLDGRRPNELRRIRCKLGVFKQPDGSAYLEQGNTKVLAAVYGPHQASKSKMSNEGVVVNC 68
Query: 65 IWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G + E + L++ L + + P + V ++V+ DG+
Sbjct: 69 QYSMATFSTGERKNRPHGDRKSTEMSLHLRQALTAAIKTELYPRSQIDVYVEVLQADGSC 128
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
+NAA AL+DAGIP++ A C CSA +
Sbjct: 129 YCVCVNAATLALIDAGIPLRAYA---CACSASMSW 160
>gi|332157779|ref|YP_004423058.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
gi|331033242|gb|AEC51054.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. NA2]
Length = 249
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K++AAVYGPK K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKIIAAVYGPKELHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>gi|195143763|ref|XP_002012867.1| GL23700 [Drosophila persimilis]
gi|194101810|gb|EDW23853.1| GL23700 [Drosophila persimilis]
Length = 234
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
D+ + ++LR + C + L R GS + QG T V++AV GP +N + + + +E
Sbjct: 5 DKPEQVAKDKLREMQCKFNPLSRCDGSVMYCQGATVVISAVLGPIEVKTQNLSIDGSYLE 64
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
++P+ G E+ E ++ L+ + P + S+ IQ + D G++ CA+N+A
Sbjct: 65 CNYRPKAGLPQVKERIREAAVRDVLELALLSEAYPRSKMSLQIQELEDRGSIDACALNSA 124
Query: 124 CAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
C A++ G+P+K A+ C E G ILDP + E + + F
Sbjct: 125 CLAMLIGGLPLKCSFAAVHCIINEQGEYILDPDQRETEHERASFTFAF------------ 172
Query: 184 SLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
+ +E ++ T G+ + ++ R+ASA++ F R S+
Sbjct: 173 -----DSLEGNLLLVQTKGSFKIAEFNDVESLCRSASAEILQFYRTSI 215
>gi|126322962|ref|XP_001364428.1| PREDICTED: exosome complex component RRP41-like [Monodelphis
domestica]
Length = 245
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + + P + + +QV+ DG
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GNYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|270010551|gb|EFA06999.1| hypothetical protein TcasGA2_TC009968 [Tribolium castaneum]
Length = 251
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 11/167 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR ++LR + C + GSA QG TKVLAAVYGP G++ + A +
Sbjct: 14 RQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVRGSRSKAQHDSAVV 73
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ G+ +K E I L++ L + + + P T V ++V+H DG
Sbjct: 74 NCQFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+ P +NAA AL+DAGIP+K A A + +LD + EE
Sbjct: 134 GIYPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEE 180
>gi|410987869|ref|XP_004000217.1| PREDICTED: exosome complex component RRP41 [Felis catus]
Length = 245
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C CSA
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSA 162
>gi|449451735|ref|XP_004143616.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
gi|449516461|ref|XP_004165265.1| PREDICTED: exosome complex component RRP41-like [Cucumis sativus]
Length = 241
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 92/171 (53%), Gaps = 21/171 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P +LR + + +A+GSA + G+TKVLAAVYGP+ K++ ++
Sbjct: 10 RQDGRRPRELREMRAEIGAVSKANGSAVFEMGNTKVLAAVYGPREVQNKSQQMSNQALVR 69
Query: 63 --EVIWKPRTG-QIGKPE-----KEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ TG ++ KP+ E +++++T++ CILT + P + + +QV+ DG
Sbjct: 70 CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIFVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY----CILDPTKLEE 160
INAA AL DAGIPM+ + + CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDI---VTSCSA--GYLNSNALLDLNYVED 174
>gi|375082088|ref|ZP_09729158.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
gi|374743301|gb|EHR79669.1| exosome complex exonuclease Rrp41 [Thermococcus litoralis DSM 5473]
Length = 247
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RLDGRKKYELRPIKMEVGVLKSADGSAYVEWGKNKILAAVYGPREIHPKHLQKPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T+ V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIDGEIVLDLNKEED 180
>gi|395512698|ref|XP_003760572.1| PREDICTED: exosome complex component RRP41 [Sarcophilus harrisii]
Length = 245
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + + P + + +QV+ DG
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKACEMGLQLRQTFEAAILTQLYPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GNYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|402224488|gb|EJU04550.1| ribosomal protein S5 domain 2-like protein [Dacryopinax sp. DJM-731
SS1]
Length = 257
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK---AS 61
R+DGR P +LR + + A GSAS S G T+V A VYGP+ + + +
Sbjct: 13 RSDGRRPLELRSFSAELTTHPSADGSASVSHGLTQVTACVYGPREAKNRAQTMHDRALVN 72
Query: 62 IEVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
IEV P G++ + E+ +K T + + T+ P + + I V+ DG
Sbjct: 73 IEVEVAPWAGEVRRQRTKGDRRTAEFAASVKATFEPVIQTTLYPRSEIDIHIHVLQLDGG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LL INA ALVDAGIPM ++ + +LD T LEE + V P S
Sbjct: 133 LLQAGINATTLALVDAGIPMLDYVSSLSAGLYHT-TAMLDLTNLEESDLPSVTVAVLPRS 191
>gi|14520826|ref|NP_126301.1| exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
gi|29337010|sp|Q9V119.1|ECX1_PYRAB RecName: Full=Probable exosome complex exonuclease 1
gi|170292234|pdb|2PNZ|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
gi|170292236|pdb|2PO0|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
gi|170292239|pdb|2PO1|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
gi|170292241|pdb|2PO2|A Chain A, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
gi|5458042|emb|CAB49532.1| rph ribonuclease PH, exosome complex exonuclease [Pyrococcus abyssi
GE5]
gi|380741368|tpe|CCE70002.1| TPA: exosome complex exonuclease Rrp41 [Pyrococcus abyssi GE5]
Length = 249
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>gi|291416252|ref|XP_002724360.1| PREDICTED: exosome component 4 [Oryctolagus cuniculus]
Length = 245
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T + ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTAERKRRPHGDRKSCELGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALTDLSHVEE 178
>gi|311253303|ref|XP_003125499.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Sus
scrofa]
Length = 245
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++ ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+ +N A A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GIYAACVNVATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|347524281|ref|YP_004781851.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
gi|343461163|gb|AEM39599.1| exosome complex exonuclease 1 [Pyrolobus fumarii 1A]
Length = 248
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LRP+ +L A GSA G T+V+AAVYGP+ K+ P++A I
Sbjct: 21 RHDGRAPDELRPIRMEVGVLSNADGSAYVEFGRTRVIAAVYGPREVHPKHMALPDRALIR 80
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + ++ + E E +++ L+ + + P TT + I+V+ DG
Sbjct: 81 CRYHMAPFSTDERKSPAPTRREIELSKVIREALEPVVFTELYPRTTIDIFIEVIEADGGT 140
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
A+ AA AL DAG+ M+ L + + G +LD +LE++
Sbjct: 141 RTAAVTAASLALADAGVQMRDLVAGVAVGKVQ-GVLVLDIDQLEDE 185
>gi|301773432|ref|XP_002922117.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1
[Ailuropoda melanoleuca]
Length = 245
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C CSA
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSA 162
>gi|219127863|ref|XP_002184146.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404377|gb|EEC44324.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 274
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRA--HGSASWSQGDTKVLAAVYGPKAGTKK-NENPEKAS 61
R DGR P+++R + S L + GSA G T VLA V GP ++ +ENP++A
Sbjct: 17 RNDGRKPHEIRRMRVQMSPLSVSTISGSALVEMGLTVVLATVRGPVDCLRRADENPDQAV 76
Query: 62 IEVIWK--PRTG----QIGKPEKEYEII-----LKRTLQSICILTINPNTTTSVIIQVVH 110
++V + P + ++ P+ + +I LKR +++ +L + P + +++ V+
Sbjct: 77 LDVTVQSAPFSSSADRRVANPKTDRRLIEASHMLKRAMEAAILLHLYPKSRIELVVSVLA 136
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA----------ESGYCILDPTKLEE 160
DDG L AINAA AL+DAGIPMK +C CSA ++D + EE
Sbjct: 137 DDGGRLCAAINAATLALMDAGIPMKDF---VCACSAGLPGTSATPDSHALTLVDLNRQEE 193
Query: 161 QKMKGFAYLVFPNSILSVLPEGSSLVQGE---------PMEHGIITSVTHGAMSVDDYFH 211
G A P +++LP+ ++LV + +E ++ + T G +V D
Sbjct: 194 SSTGGQAATHMP---VALLPQRNTLVLAQCEARLPNLDTLER-VLDAATEGCRAVFDILQ 249
Query: 212 CLERGRAAS 220
R AA+
Sbjct: 250 AAVREHAAT 258
>gi|398412181|ref|XP_003857419.1| hypothetical protein MYCGRDRAFT_30576, partial [Zymoseptoria
tritici IPO323]
gi|339477304|gb|EGP92395.1| hypothetical protein MYCGRDRAFT_30576 [Zymoseptoria tritici IPO323]
Length = 202
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 86/170 (50%), Gaps = 10/170 (5%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L RA GS ++S V+A V GP +++E PE+A+IEV +P +G G E+ E +
Sbjct: 1 LARADGSTAFSSDLYTVVAGVNGPVEVQRRDELPEEAAIEVNLRPISGVGGPRERWLETV 60
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIP 133
L L+S+ ++ ++P T + +QV H+ D +++P +NAA AALVD G+P
Sbjct: 61 LHAVLKSVLLVNMHPRTLIQITLQVTHEPILKWQRTATDISIIPTLLNAAFAALVDGGLP 120
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGS 183
+ A E G I+DP + + K + F +L E S
Sbjct: 121 LAATTAAALAIIREDGEVIIDPQEKQMSSYKSIHAMAFDQHGSQLLDESS 170
>gi|440802076|gb|ELR23015.1| 3' exoribonuclease family, domain 1 domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 274
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 18/196 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
+E R DGR+P++ RP+ ++ +A GSA TKV+ VYGP+ T K EK
Sbjct: 35 VEGKRLDGRSPDEFRPVFLKTGVISQAAGSAYIEMNQTKVICGVYGPRQ-TPKTVYSEKG 93
Query: 61 SIEVIWK---------PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ +K R K EKE +++ + L+ L P + V + V+ +
Sbjct: 94 KLNCFFKLATFAENGERRKYVSDKEEKELSMLMVQALEVSLRLETFPKSELDVFVLVLEE 153
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
G ++ AI AA AL DAGI M L VA C + +LDP+ EE+ +
Sbjct: 154 SGGMVGAAITAASLALADAGIEMYDL-VASCSVGVVDSHILLDPSIAEEKAAQS------ 206
Query: 172 PNSILSVLPEGSSLVQ 187
N +++++P + + Q
Sbjct: 207 -NLMVAIMPSANEITQ 221
>gi|57095694|ref|XP_539207.1| PREDICTED: exosome complex component RRP41 isoform 1 [Canis lupus
familiaris]
Length = 245
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C CSA
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSA 162
>gi|118151420|ref|NP_001071554.1| exosome complex component RRP41 [Bos taurus]
gi|81673708|gb|AAI09820.1| Exosome component 4 [Bos taurus]
Length = 245
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++ +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRPLV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>gi|336477103|ref|YP_004616244.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
gi|335930484|gb|AEH61025.1| exosome complex exonuclease 1 [Methanosalsum zhilinae DSM 4017]
Length = 299
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 30/246 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR +++RP+ +L RA GS G KVLAAVYGP+ ++ + P+ A I
Sbjct: 15 RLDGRRVDEIRPMKIDIGVLSRADGSCYLEWGKNKVLAAVYGPRTLHPRRKQIPDAALIR 74
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + G + EI + + + + PNT + +++ D
Sbjct: 75 YRYNMASFSVEDRIRPGPSRRSVEISKVSAEAFEPVVLTKFYPNTVIDIFTEIIQADAGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
AINAA AL DAGIPMK L V+ C G +LD K E+ F P ++
Sbjct: 135 RTAAINAASIALADAGIPMKGL-VSACAVGKVDGQLVLDLNKDEDN----FGAADLPVAM 189
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ G IT + G ++ +++ +E RA ++ + +++L +K
Sbjct: 190 ---------------TQDGEITLIQMDGNLTQEEFKEAIEMVRAGCMEILEIQKKALYTK 234
Query: 235 LPGDLS 240
D S
Sbjct: 235 FGDDSS 240
>gi|195398184|ref|XP_002057704.1| GJ18275 [Drosophila virilis]
gi|194141358|gb|EDW57777.1| GJ18275 [Drosophila virilis]
Length = 249
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPE----- 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A KK E +
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLIINC 73
Query: 59 ---KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+A+ + + + +E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGAN 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++NAA AL+DAGI + VA ++S + D + +EE
Sbjct: 134 YAVSLNAATLALIDAGICLNEFVVACTASLSKSNIPLTDISHIEE 178
>gi|194740918|ref|XP_001952937.1| GF17467 [Drosophila ananassae]
gi|190625996|gb|EDV41520.1| GF17467 [Drosophila ananassae]
Length = 234
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 102/222 (45%), Gaps = 21/222 (9%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
+QLR + C + L R GS +SQG + V++AV GP +N + + + +E ++P+ G
Sbjct: 12 DQLRRMHCEFNPLSRCDGSVMYSQGASVVISAVLGPVEVKSQNLSIDGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
E+ E +K L + P + S+ +Q + D G++ CA+N+AC A++ G
Sbjct: 72 LPQVKERLREAAIKDILDLTVLSEAYPRSKMSIQVQELEDRGSMDACAVNSACLAMLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+P+K A+ C E G +LDP E + F + M
Sbjct: 132 LPLKCSFAAVHCIIDEQGDYVLDPDHSETAHQRASFTFAF-----------------DSM 174
Query: 192 EHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 231
E ++ T GA ++ + CL R+AS ++ F R +
Sbjct: 175 EGNLLLIQTKGAFKIEQFNDIECL--CRSASQEIFKFYRSQI 214
>gi|315229927|ref|YP_004070363.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
gi|315182955|gb|ADT83140.1| exosome complex exonuclease 1 [Thermococcus barophilus MP]
Length = 246
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 16 RIDGRKKYELRPIKMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDRAILR 75
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 76 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAIILELFPRTAIDVFIEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPMK L V+ C G +LD K E+
Sbjct: 136 RVAGITAASLALADAGIPMKDL-VSACAAGKIEGQIVLDLNKEED 179
>gi|297809689|ref|XP_002872728.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
gi|297318565|gb|EFH48987.1| hypothetical protein ARALYDRAFT_490148 [Arabidopsis lyrata subsp.
lyrata]
Length = 132
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 66/99 (66%), Gaps = 6/99 (6%)
Query: 22 SILHRAHGSASW-SQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG----KP 76
S L+ H + S+ GDTKVLAA YG KA + + P++ I + +G + K
Sbjct: 4 SFLNGIHWTLSFICSGDTKVLAAQYGLKA-SYGSHKPDRLVIVNAFSFSSGGVFCCLRKV 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
E+EYE ILKRTLQ+IC+LT+ PNTTTSVIIQVVHD G++
Sbjct: 63 EREYETILKRTLQNICVLTVVPNTTTSVIIQVVHDGGSV 101
>gi|156388129|ref|XP_001634554.1| predicted protein [Nematostella vectensis]
gi|156221638|gb|EDO42491.1| predicted protein [Nematostella vectensis]
Length = 247
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 93/192 (48%), Gaps = 18/192 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR ++LR + C +L +A GSA G+TK LA VYGP + K ++ +
Sbjct: 13 RIDGRKASELRKMVCKVGVLSQADGSAYIEMGNTKALATVYGPHEVQNKAKALHDRVLLN 72
Query: 64 VIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + T G+ +K E ++++RT ++ ++ + P + + +QV+ DG
Sbjct: 73 VQFGMATFSTGERKKKPRGDRKATELSMMVRRTFEAAILINLYPRSQIDIYVQVLQADGG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
INA AL++AGIP+K V+ C S + ++D LEE P
Sbjct: 133 NHVACINAVTLALINAGIPLKDY-VSACTVSFVNDTPLMDINYLEESTGG-------PQL 184
Query: 175 ILSVLPEGSSLV 186
L++LP+ +V
Sbjct: 185 TLAILPKSDKIV 196
>gi|327310389|ref|YP_004337286.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
gi|326946868|gb|AEA11974.1| exosome complex exonuclease Rrp41 [Thermoproteus uzoniensis 768-20]
Length = 245
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEK 59
+E RADGR P+Q+R + S ++ A GSA S G+T +AAVYGP+ ++ + P++
Sbjct: 10 VEGRRADGRTPDQMREVKISVGVISNADGSAMVSYGNTTAVAAVYGPREMHPRHLSLPDR 69
Query: 60 ASIEVIW-------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
A + V + + +E EI +L+ L+ L P + V +++V
Sbjct: 70 AVMRVRYHMAPFSTRDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFVEIVQ 129
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
DG+ ++ AA AL DAG+PM+ L + + +G +LD LE+ +G
Sbjct: 130 ADGSTRVASLTAASLALADAGVPMRDLVIGVSVGLV-NGTVVLDLNGLEDNYGEG 183
>gi|297683870|ref|XP_002819616.1| PREDICTED: exosome complex component RRP41 [Pongo abelii]
Length = 343
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 84/169 (49%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GS QG+TK LA VYGP G++ P++A +
Sbjct: 111 RVDGRRAGELRKIQARMGVFAQADGSGYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 170
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 171 NCQYSSATFSTGERKRRRHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 230
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 231 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 276
>gi|170070082|ref|XP_001869459.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
gi|167866003|gb|EDS29386.1| exosome complex exonuclease RRP41 [Culex quinquefasciatus]
Length = 245
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + C + + GSA QG+TKVLAAVYGP K N E+ +
Sbjct: 10 RLDGRRSNELRRIQCKLGVFSQPDGSAYVEQGNTKVLAAVYGPHQAPAKKSNHEECVVNC 69
Query: 65 IWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G+ +K E I L++ L + + P + V I+V+ DG
Sbjct: 70 QYSMATFSTGERKKRPRGDRKSQEMTIHLQQALSAAIKTDLYPKSQIDVYIEVLMADGGN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV---FP 172
++NAA AL+DAGI +K A C S ++D + LEE M G L P
Sbjct: 130 YCASVNAATLALIDAGICLKEYVCA-CTASLAGKVPLMDVSNLEE--MSGGPTLTVASLP 186
Query: 173 NS 174
NS
Sbjct: 187 NS 188
>gi|57641569|ref|YP_184047.1| exosome complex exonuclease Rrp41 [Thermococcus kodakarensis KOD1]
gi|73919276|sp|Q5JIR6.1|ECX1_PYRKO RecName: Full=Probable exosome complex exonuclease 1
gi|57159893|dbj|BAD85823.1| exosome subunit Rrp41p homolog, 3'-5' exoribonuclease [Thermococcus
kodakarensis KOD1]
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G KVLAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ +L + P T V I+++ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPMK L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMKDL-VAACAAGKIDGEIVLDLNKEED 180
>gi|212223175|ref|YP_002306411.1| exosome complex exonuclease Rrp41 [Thermococcus onnurineus NA1]
gi|226740341|sp|B6YSI2.1|ECX1_THEON RecName: Full=Probable exosome complex exonuclease 1
gi|212008132|gb|ACJ15514.1| 3'-5' exoribonuclease [Thermococcus onnurineus NA1]
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T + I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEEDN 181
>gi|195996065|ref|XP_002107901.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
gi|190588677|gb|EDV28699.1| hypothetical protein TRIADDRAFT_51876 [Trichoplax adhaerens]
Length = 243
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR P ++R C +L RA GSA QG+TK LA++ GP +AG K ++ I
Sbjct: 10 RIDGRRPEEIRRFNCRLGVLSRADGSAYLEQGNTKALASINGPHQAGDKAKIKHDRVHIN 69
Query: 64 VIW-------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ R + ++ +I +++ QS + + P + + +Q++ DG
Sbjct: 70 FQYSMATFSTNERRNRPKGDKRSIDISQLMREIFQSAILTDLYPKSQIDIHVQILQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFP 172
INAA AL+DAG+PMK IC C+A I+D EE L F
Sbjct: 130 NYSACINAATLALMDAGVPMKDF---ICSCTASLVDSKTIIDVNNSEE--------LHFS 178
Query: 173 NSILS--VLPEGSSLV 186
N +L+ +LP ++
Sbjct: 179 NPLLTLAILPTSEEII 194
>gi|390960833|ref|YP_006424667.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
gi|390519141|gb|AFL94873.1| exosome complex exonuclease Rrp41 [Thermococcus sp. CL1]
Length = 249
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DAG+PM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGVPMRDL-VAACAAGKIEGEIVLDLNKEEDN 181
>gi|389852857|ref|YP_006355091.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
gi|388250163|gb|AFK23016.1| exosome complex exonuclease Rrp41 [Pyrococcus sp. ST04]
Length = 249
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T + I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDIFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>gi|449303838|gb|EMC99845.1| hypothetical protein BAUCODRAFT_352759 [Baudoinia compniacensis
UAMH 10762]
Length = 253
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN----ENPEKA 60
R DGR N+LR L S S+ + GSA QG+TK+LA V GP+ ++ + K
Sbjct: 14 RLDGRRWNELRRLHASLSVQSSSDGSAYLEQGNTKILATVSGPQEPVRRTGRDGSSEAKI 73
Query: 61 SIEVIWKPRTG----QIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+EV P +G + K EK E ++ + R Q + + + P++ V + V+ DG
Sbjct: 74 EVEVNVTPFSGTDRKRRAKGEKRVQELQLTVARAFQGVVLGHLYPHSVVEVRLHVLSQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 163
+LL +NAA AL+DAGIPM +A C ++ +LD LEEQ++
Sbjct: 134 SLLAACLNAATLALIDAGIPMTDY-IAACTVASSPSSDQSIDDSDPLLDLNGLEEQEL 190
>gi|18977940|ref|NP_579297.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus DSM 3638]
gi|397652061|ref|YP_006492642.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
gi|29336822|sp|Q8U0L9.1|ECX1_PYRFU RecName: Full=Probable exosome complex exonuclease 1
gi|18893710|gb|AAL81692.1| ribonuclease ph (rph) [Pyrococcus furiosus DSM 3638]
gi|393189652|gb|AFN04350.1| exosome complex exonuclease Rrp41 [Pyrococcus furiosus COM1]
Length = 250
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACSAGKIEGEIVLDLNKEED 180
>gi|195472532|ref|XP_002088554.1| GE11809 [Drosophila yakuba]
gi|194174655|gb|EDW88266.1| GE11809 [Drosophila yakuba]
Length = 246
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 84/162 (51%), Gaps = 6/162 (3%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNEN-----PE 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A K+ E+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKQTESIINCQYS 73
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
+A+ + + + E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QATFSTAERKNRPRGDRKSLEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGANYAV 133
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D + EE
Sbjct: 134 ALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISHFEE 175
>gi|452822821|gb|EME29837.1| exosome complex component RRP41 [Galdieria sulphuraria]
Length = 249
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 78/153 (50%), Gaps = 12/153 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------P 57
R DGR P ++R + C IL RA GS G+T VLA VYGP+ + + +
Sbjct: 13 RTDGRRPLEIRKVTCRMGILPRADGSCHLEMGNTIVLATVYGPRELSSRQSSCGIIRCEY 72
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
AS + R + + E +K+T +++ + + P + + IQV+ DG+
Sbjct: 73 SMASFASTDRRRGKRSDRNSVEMASSIKKTFENVLLTDLFPKSRVDIFIQVLQADGSERS 132
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
AINA A+V+AGIPMK L V+ CSA GY
Sbjct: 133 AAINAVTIAMVNAGIPMKDLIVS---CSA--GY 160
>gi|333986695|ref|YP_004519302.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
gi|333824839|gb|AEG17501.1| exosome complex exonuclease 1 [Methanobacterium sp. SWAN-1]
Length = 242
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
RADGR ++LRPL +L RA GSA G KVLAAVYGP+ ++ P KA +
Sbjct: 19 RADGRAFDELRPLKIEAGVLERADGSAYVEMGGNKVLAAVYGPRELHIRRIMMPNKAVLR 78
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L L P +T V I+V+ +G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKITSEALTPAVFLEKFPRSTIDVFIEVLEAEGGT 138
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAG+PM+ + VA C +G ++D +++E+++
Sbjct: 139 RCAGITAASVALADAGVPMRDIVVA-CAAGKSNGQVVMDLSEVEDKE 184
>gi|47848476|dbj|BAD22331.1| putative exosome component 4 [Oryza sativa Japonica Group]
gi|47848647|dbj|BAD22495.1| putative exosome component 4 [Oryza sativa Japonica Group]
Length = 245
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 33/176 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK--------------AG 50
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVAAHPDYWLVRLISK 70
Query: 51 TKKNE--------NPEKASIEVIW--------KPRTGQIGKPEKEYEIILKRTLQSICIL 94
K E K++ +++W + R + + E +++++T+++ +
Sbjct: 71 KAKREGLRGRSRTKVSKSTAKMLWMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILT 130
Query: 95 TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
+ P + + +QV+ DG INAA AL DAGIPM+ + + CSA+ Y
Sbjct: 131 HLMPRSQIDIFVQVLQADGGTRAACINAATLALADAGIPMRDI---VTSCSADLNY 183
>gi|312137048|ref|YP_004004385.1| ribosomal RNA-processing protein rrp41/ski6 [Methanothermus
fervidus DSM 2088]
gi|311224767|gb|ADP77623.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanothermus
fervidus DSM 2088]
Length = 236
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 24/223 (10%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEK 59
+E R DGR N+LRP+ +L RA GS+ G K+LAAVYGP+ K + P++
Sbjct: 8 VEFVRKDGRAYNELRPVKIKAGVLKRADGSSYIELGSNKILAAVYGPRDPQITKIKRPDR 67
Query: 60 ASIE---------VIWKPRTGQIGKPEKEYEIILKRTLQSIC---ILTINPNTTTSVIIQ 107
A I V + R G P++ I K T +++ IL P ++ + I+
Sbjct: 68 AIIRCRYNMAPFSVEERKRPG----PDRRSIEISKITAEALAPSIILEKFPRSSIDIFIE 123
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFA 167
V+ DG I AA AL DAGIP++ L VA C +G+ +LD T EE+ +G A
Sbjct: 124 VLEADGGTRCAGITAASVALADAGIPLRDLVVA-CSAGKVNGHVVLDLT--EEEDKEGEA 180
Query: 168 YL---VFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVD 207
+ + P + L + + E +E I ++ G MS++
Sbjct: 181 DVPVAIMPRTKEITLLQVDGELTPEELEKAIDLAI-EGCMSIN 222
>gi|189239465|ref|XP_975230.2| PREDICTED: similar to exosome complex exonuclease RRP41, putative
[Tribolium castaneum]
Length = 249
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 78/165 (47%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++LR + C + GSA QG TKVLAAVYGP + A +
Sbjct: 14 RQDGRRADELRRIRCKLGVFTEPDGSAYLEQGLTKVLAAVYGPHQVGFAKAQHDSAVVNC 73
Query: 65 IWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ G+ +K E I L++ L + + + P T V ++V+H DG +
Sbjct: 74 QFSMAVFSTGERKKRPRGDRKSTEISIHLRQALTAAIKVELYPWTQIDVYVEVLHADGGI 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
P +NAA AL+DAGIP+K A A + +LD + EE
Sbjct: 134 YPACVNAATLALIDAGIPLKEYVCACTASLANNDVPLLDVSHQEE 178
>gi|341582108|ref|YP_004762600.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
gi|340809766|gb|AEK72923.1| exosome complex exonuclease Rrp41 [Thermococcus sp. 4557]
Length = 249
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RVDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T+ + I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTSIDLFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DAG+PM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGVPMRDL-VAACAAGKIEGEIVLDLNKDEDN 181
>gi|282165297|ref|YP_003357682.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
gi|282157611|dbj|BAI62699.1| putative exosome complex exonuclease 1 [Methanocella paludicola
SANAE]
Length = 254
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR PN+LRP+ +L RA GS G KV+AAVYGP+ ++ +N +A +
Sbjct: 13 RLDGRGPNELRPIKFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + L+S+ + + P + + ++++ D
Sbjct: 73 YRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVVLEELYPRSAVDIFVEILQADAGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL DAGIPM+ L V+ C G +LD K E+
Sbjct: 133 RVAGINAASVALADAGIPMRCL-VSACSVGKIDGEVVLDLNKDED 176
>gi|198434569|ref|XP_002126010.1| PREDICTED: similar to Exosome complex exonuclease MTR3 (mRNA
transport regulator 3 homolog) (Exosome component 6)
[Ciona intestinalis]
Length = 276
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 110/243 (45%), Gaps = 16/243 (6%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPE 58
E RADGR Q R + C ++ +A GSA + TKV+ +VYGPK + E N
Sbjct: 32 EEKRADGRYVTQPRDVFLQCGVITQAKGSAYFEMNKTKVICSVYGPKDIEMREEFQINKG 91
Query: 59 KASIEVIWKPRTGQI------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
K E+ + P + G + E IL + S L P + V + V+ DD
Sbjct: 92 KLKCELKYAPYSSPKHGDHIPGASDVEKSDILLEAISSGVCLQRYPKSQIDVYVIVLEDD 151
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G+++P AI AA ALVDAGI M + A A I+DPT EE F+ L
Sbjct: 152 GSVMPAAITAASVALVDAGIEMYDVITASSIRIAGQDTFIIDPTSSEE-----FSPLNLE 206
Query: 173 NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
S + L +G +V P + + + V+ G + + + R ++ L +R+ L
Sbjct: 207 KS--NDLNQGMVMVALLPSINQVSSVVSSGHLECNVLQEAIRSCRYSAQNLHSIVRKCLV 264
Query: 233 SKL 235
+ L
Sbjct: 265 NSL 267
>gi|260834851|ref|XP_002612423.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
gi|229297800|gb|EEN68432.1| hypothetical protein BRAFLDRAFT_121031 [Branchiostoma floridae]
Length = 246
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 27/228 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENPEKAS 61
R DGR ++LR + + +A GSA QG+TK LA VYGP + G K ++ ++A
Sbjct: 13 RIDGRRSSELRKVCARMGVFTQADGSAYIEQGNTKALATVYGPHEVRKGRGKIQH-DRAV 71
Query: 62 IEVIWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ + T G + +E + L++T +++ + + P + + +Q++ D
Sbjct: 72 VNCQFSMATFSTGERKSRPKGDRRSQEMSMHLRQTFEAVIVTELFPRSQIDIYVQILQAD 131
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEEQKMKGFAY 168
G +NAA A++DAGIPMK +C C+A G+ +LD + +EE F
Sbjct: 132 GGNYCACVNAATLAVIDAGIPMKDY---VCACTA--GFIQDSPLLDISYVEESAGAPFLT 186
Query: 169 L-VFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLER 215
+ + P S VL E +S + + ME ++ T G D F L+R
Sbjct: 187 VAMMPKSEQIVLLEMNSRLHADNMEK-VLDLATQGC---KDVFAVLDR 230
>gi|195116638|ref|XP_002002859.1| GI10716 [Drosophila mojavensis]
gi|193913434|gb|EDW12301.1| GI10716 [Drosophila mojavensis]
Length = 249
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPE----- 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A KK E +
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGKKTEGNDLVINC 73
Query: 59 ---KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+A+ + + + +E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QYSQATFSTSERKNRPRGDRKSQEFKMYLQQALSAAIKSELYPRSQIDIYVEVLQADGAN 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++NAA AL+DAGI + VA + + + D + +EE
Sbjct: 134 YAVSLNAATLALIDAGICLNEFVVACTASLSNANIPLTDISHIEE 178
>gi|351713983|gb|EHB16902.1| Exosome complex exonuclease RRP41 [Heterocephalus glaber]
Length = 256
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 85/180 (47%), Gaps = 27/180 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-------------GT 51
R DGR +LR + + +A GSA QG+TK LA VYGP G+
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASLVYLSFLFQIRGS 72
Query: 52 KKNENPEKASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTT 102
+ P++A + + T G+ ++ E + L++T ++ + ++P +
Sbjct: 73 RSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQI 132
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+ +QV+ DG +NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 DIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 189
>gi|298674553|ref|YP_003726303.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
gi|298287541|gb|ADI73507.1| exosome complex exonuclease 1 [Methanohalobium evestigatum Z-7303]
Length = 333
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKA--- 60
R DGR +++RP+ +L RA GS G+ K+++AVYGP+ ++ + P+ A
Sbjct: 15 RVDGRRTDEIRPMKVDIGVLSRADGSCYLEWGNNKIISAVYGPRELHPRRMQRPDAAVIR 74
Query: 61 --------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
S+E +P R+ +I K + + + + PNT V +V
Sbjct: 75 YKYNMASFSVEDRQRPGPSRRSSEISK-------VSSEAFEPVVMTQFYPNTVIDVFSEV 127
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
+ D AINAA AL+DAGIP+K L V+ C G +LD K E+ +
Sbjct: 128 LEADAGTRTAAINAATLALIDAGIPLKSL-VSACAVGKVDGQLVLDLNKKEDNE 180
>gi|195499795|ref|XP_002097098.1| GE26036 [Drosophila yakuba]
gi|194183199|gb|EDW96810.1| GE26036 [Drosophila yakuba]
Length = 227
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 6 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
E+ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 66 LPQVKERIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 125
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+P+K A+ C E G +LDP + E + F + +
Sbjct: 126 LPLKCSFAAVHCIINEQGEYVLDPDQSETLHQRASFTFAF-----------------DSV 168
Query: 192 EHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLR 228
E ++ T GA + + CL R+ASA++ F R
Sbjct: 169 EGNLLLVQTKGAFKIAQFNDIECL--CRSASAEIFQFYR 205
>gi|15897636|ref|NP_342241.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus P2]
gi|29337007|sp|Q9UXC2.1|ECX1_SULSO RecName: Full=Probable exosome complex exonuclease 1
gi|71042717|pdb|2BR2|B Chain B, Rnase Ph Core Of The Archaeal Exosome
gi|71042719|pdb|2BR2|D Chain D, Rnase Ph Core Of The Archaeal Exosome
gi|71042721|pdb|2BR2|F Chain F, Rnase Ph Core Of The Archaeal Exosome
gi|71042723|pdb|2BR2|H Chain H, Rnase Ph Core Of The Archaeal Exosome
gi|71042725|pdb|2BR2|J Chain J, Rnase Ph Core Of The Archaeal Exosome
gi|71042727|pdb|2BR2|L Chain L, Rnase Ph Core Of The Archaeal Exosome
gi|71042729|pdb|2BR2|N Chain N, Rnase Ph Core Of The Archaeal Exosome
gi|71042731|pdb|2BR2|P Chain P, Rnase Ph Core Of The Archaeal Exosome
gi|71042733|pdb|2BR2|R Chain R, Rnase Ph Core Of The Archaeal Exosome
gi|71042735|pdb|2BR2|T Chain T, Rnase Ph Core Of The Archaeal Exosome
gi|71042737|pdb|2BR2|V Chain V, Rnase Ph Core Of The Archaeal Exosome
gi|71042739|pdb|2BR2|X Chain X, Rnase Ph Core Of The Archaeal Exosome
gi|83754539|pdb|2C37|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754541|pdb|2C37|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754543|pdb|2C37|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754545|pdb|2C37|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754547|pdb|2C37|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754549|pdb|2C37|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754551|pdb|2C37|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754553|pdb|2C37|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754555|pdb|2C37|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754557|pdb|2C37|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754559|pdb|2C37|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754561|pdb|2C37|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With U8
Rna
gi|83754563|pdb|2C38|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754565|pdb|2C38|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754567|pdb|2C38|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754569|pdb|2C38|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754571|pdb|2C38|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754573|pdb|2C38|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754575|pdb|2C38|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754577|pdb|2C38|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754579|pdb|2C38|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754581|pdb|2C38|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754583|pdb|2C38|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754585|pdb|2C38|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With A5
Rna
gi|83754587|pdb|2C39|B Chain B, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754589|pdb|2C39|D Chain D, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754591|pdb|2C39|F Chain F, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754593|pdb|2C39|H Chain H, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754595|pdb|2C39|J Chain J, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754597|pdb|2C39|L Chain L, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754599|pdb|2C39|N Chain N, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754601|pdb|2C39|P Chain P, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754603|pdb|2C39|R Chain R, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754605|pdb|2C39|T Chain T, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754607|pdb|2C39|V Chain V, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|83754609|pdb|2C39|X Chain X, Rnase Ph Core Of The Archaeal Exosome In Complex With Adp
gi|6015742|emb|CAB57569.1| ribonuclease PH [Sulfolobus solfataricus P2]
gi|13813903|gb|AAK41031.1| Ribonuclease PH (rph) [Sulfolobus solfataricus P2]
Length = 248
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 79 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 138
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA AL DAGIPM+ L + A+ G ILD + E+
Sbjct: 139 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETED 182
>gi|284174962|ref|ZP_06388931.1| exosome complex exonuclease Rrp41 [Sulfolobus solfataricus 98/2]
gi|384434251|ref|YP_005643609.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
gi|299689089|pdb|3L7Z|B Chain B, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689092|pdb|3L7Z|E Chain E, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|299689095|pdb|3L7Z|H Chain H, Crystal Structure Of The S. Solfataricus Archaeal Exosome
gi|261602405|gb|ACX92008.1| exosome complex exonuclease 1 [Sulfolobus solfataricus 98/2]
Length = 245
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA AL DAGIPM+ L + A+ G ILD + E+
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETED 179
>gi|224001004|ref|XP_002290174.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973596|gb|EED91926.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 172
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 85/166 (51%), Gaps = 27/166 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRA------------HGSASWSQGDTKVLAAVYGPK-AGT 51
R+DGR P+++R ++C L GSA S G T+VL V GP AG
Sbjct: 9 RSDGRRPHEIRHMSCHLGALPSTTACGSALPTSACSGSALVSMGLTQVLCVVRGPSDAGR 68
Query: 52 KKNENPEKASIEVIWK------PRTGQIGKPEKEYEII-----LKRTLQSICILTINPNT 100
+ E P++A++EV + P ++ P + +I L+ L + +L + P +
Sbjct: 69 RTEELPDRATLEVTMRTSPFSPPGDRRVTNPTSDRRLIEQSHLLQTALSASILLHLYPKS 128
Query: 101 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
SV + V+ DDG L AINAA AL+DAGIP+K + +C CSA
Sbjct: 129 KISVTVMVLADDGGRLEAAINAATLALIDAGIPLKDM---VCACSA 171
>gi|440804447|gb|ELR25324.1| exosome complex exonuclease rrp41, putative [Acanthamoeba
castellanii str. Neff]
Length = 205
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 72/131 (54%), Gaps = 21/131 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-----AGTKKNENPEK 59
R DGR P +LR + ++ +A GSA + QG+T+VLA +YGPK +G +K++ +K
Sbjct: 13 RMDGRRPGELRRIEAKMGVVSKADGSALFRQGNTQVLATIYGPKEAGFASGERKSKKTDK 72
Query: 60 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
++E+ +++++T +S+ + + P + + +QV+ DG L A
Sbjct: 73 KTVEL----------------GMLIRQTFESVVMTALYPRSQIDIYVQVLQSDGGALSAA 116
Query: 120 INAACAALVDA 130
INA A++DA
Sbjct: 117 INATTLAMIDA 127
>gi|432328765|ref|YP_007246909.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
gi|432135474|gb|AGB04743.1| archaeal exosome-like complex exonuclease 1 [Aciduliprofundum sp.
MAR08-339]
Length = 246
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR PNQLRP+ +L RA GSA G K++AAVYGP +A K + ++A +
Sbjct: 16 RIDGRLPNQLRPIKMEVGVLERADGSAYIEWGGNKIMAAVYGPHEAYPKHVQEADRAIVR 75
Query: 64 VIW---------KPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + R G P++ E ++ L S+ + P T+ V I+V+
Sbjct: 76 ARYSMAPFSVDERKRPG----PDRRSIELSKVISEALTSVIFVEKYPRTSIDVYIEVLQA 131
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
D I A AL DAGIPM+ L V C +LD K E+ +
Sbjct: 132 DAGTRVAGITVASLALADAGIPMRDLIVG-CAAGKVDDVVVLDLNKEEDN----YGQADV 186
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLE 214
P +IL E + L + + +T+ AM H ++
Sbjct: 187 PMAILPRTGEIALLQMDGDLTYEELTTAMEMAMDAAKKIHEMQ 229
>gi|119719494|ref|YP_919989.1| exosome complex exonuclease 1 [Thermofilum pendens Hrk 5]
gi|119524614|gb|ABL77986.1| ribosomal RNA-processing protein RRP41/SKI6 [Thermofilum pendens
Hrk 5]
Length = 245
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 82/170 (48%), Gaps = 10/170 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P+++RPL +L A GSA G+ KVLAAVYGP+ ++E P++A ++
Sbjct: 16 RVDGRLPDEMRPLRVEAGVLKNADGSAYVELGNNKVLAAVYGPREPMPRHEALPDRAILK 75
Query: 64 --------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + ++ Q + E E +++ L L P T+ V I ++ DG
Sbjct: 76 CRYSMLPFSVAERKSPQPSRREIELSKVIREALAPAVFLNEYPRTSIEVYIHILEADGGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
+I A AL DAGI M+ L AI +LD +E+Q G
Sbjct: 136 RTASIIAGSVALADAGIAMRDLVAAIAVGKI-GNVLVLDINGIEDQYGDG 184
>gi|126031138|pdb|2JE6|B Chain B, Structure Of A 9-Subunit Archaeal Exosome
gi|145579801|pdb|2JEA|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Rna
gi|145579805|pdb|2JEB|B Chain B, Structure Of A 9-Subunit Archaeal Exosome Bound To Mn Ions
gi|407943802|pdb|4BA1|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
gi|407943805|pdb|4BA2|B Chain B, Archaeal Exosome (rrp4-rrp41(d182a)-rrp42) Bound To
Inorganic Phosphate
Length = 250
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 10/164 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 21 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 80
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 81 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 140
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
++ AA AL DAGIPM+ L + A+ G ILD + E
Sbjct: 141 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETE 183
>gi|13541138|ref|NP_110826.1| exosome complex exonuclease Rrp41 [Thermoplasma volcanium GSS1]
gi|29336899|sp|Q97BZ5.1|ECX1_THEVO RecName: Full=Probable exosome complex exonuclease 1
gi|14324525|dbj|BAB59452.1| ribonuclease PH [Thermoplasma volcanium GSS1]
Length = 248
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 41/246 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR+ N+LRP+ +L+RA GSA G K++ VYGPK A K
Sbjct: 18 RLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVK 77
Query: 53 KNENPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N S++ +P RT +I K ++ L S ++ P V I+V
Sbjct: 78 ARYNMAAFSVDERKRPGPDRRTMEISK-------VISEALSSSIMIEQFPRAEIDVYIEV 130
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+ D + AA AL DAGIPM+ + V C G+ +LD +K E+ F
Sbjct: 131 LQADAGTRIAGLTAATVALADAGIPMRDMVVG-CTAGKVDGHIVLDLSKEEDN----FGE 185
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
P +I+ P I+ G ++ D+++ A+ K+S R
Sbjct: 186 ADIPMAIM-------------PKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQR 232
Query: 229 RSLQSK 234
+L +K
Sbjct: 233 NALLNK 238
>gi|406695095|gb|EKC98410.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 8904]
Length = 254
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-----KAGTKKNE-NPE 58
R D R P +LR L+C+ + +A GS+ SQG T V AAV+GP KAG ++ N
Sbjct: 13 RHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAGAAHDKANVV 72
Query: 59 KASIEVIWKPRTGQ-IGKPEKEYEII-----LKRTLQSICILTINPNTTTSVIIQVVHDD 112
V W GQ G+ + ++ +++T + + + + P + +V +QV+ D
Sbjct: 73 VEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVLQAD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G +LP AINA AL+DAGI M H V +LD + EE + P
Sbjct: 133 GGILPTAINAVTLALIDAGIAM-HDYVTSVSVGLHLTQALLDLSAPEENDLPSLVVASLP 191
Query: 173 NS 174
NS
Sbjct: 192 NS 193
>gi|401885352|gb|EJT49471.1| 3'-to-5' phosphorolytic exoribonuclease, Ski6p [Trichosporon asahii
var. asahii CBS 2479]
Length = 254
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 13/182 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-----KAGTKKNE-NPE 58
R D R P +LR L+C+ + +A GS+ SQG T V AAV+GP KAG ++ N
Sbjct: 13 RHDNRRPFELRSLSCALGVHPQADGSSQVSQGLTTVQAAVFGPREPKQKAGAAHDKANVV 72
Query: 59 KASIEVIWKPRTGQ-IGKPEKEYEII-----LKRTLQSICILTINPNTTTSVIIQVVHDD 112
V W GQ G+ + ++ +++T + + + + P + +V +QV+ D
Sbjct: 73 VEVGVVPWAQGQGQGRGRTRGDKRLLEIGAAIRQTFEPVIQVGLYPRSEIAVQVQVLQAD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G +LP AINA AL+DAGI M H V +LD + EE + P
Sbjct: 133 GGILPTAINAVTLALIDAGIAM-HDYVTSVSVGLHLTQALLDLSAPEENDLPSLVVASLP 191
Query: 173 NS 174
NS
Sbjct: 192 NS 193
>gi|195571989|ref|XP_002103983.1| GD18693 [Drosophila simulans]
gi|194199910|gb|EDX13486.1| GD18693 [Drosophila simulans]
Length = 223
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 8 LRQMNCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAGLP 67
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G+P
Sbjct: 68 QVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGGLP 127
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
+K+ A+ E G +LDP + E Q + F + +E
Sbjct: 128 LKYSFAAVHAIINEQGEYVLDPDQSETQHQRASFTFAF-----------------DSVEG 170
Query: 194 GIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLR 228
++ T G+ + + CL RAASA++ F R
Sbjct: 171 NLLLVKTKGSFKIAQFNDIECL--CRAASAEIFQFYR 205
>gi|242399326|ref|YP_002994750.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
gi|242265719|gb|ACS90401.1| Probable exosome complex exonuclease 1 [Thermococcus sibiricus MM
739]
Length = 246
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LR + +L A GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 16 RVDGRKKYELRKIKMEVGVLKSADGSAYVEWGKNKIMAAVYGPREIHPKHLQKPDRAILR 75
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T+ + I+V+ D
Sbjct: 76 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPAVILELFPRTSIDIFIEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPMK L VA C G +LD K E+
Sbjct: 136 RVAGITAASLALADAGIPMKDL-VAACAAGKIDGEIVLDLNKEED 179
>gi|70606425|ref|YP_255295.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius DSM
639]
gi|449066637|ref|YP_007433719.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449068911|ref|YP_007435992.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
gi|76364178|sp|Q4JB27.1|ECX1_SULAC RecName: Full=Probable exosome complex exonuclease 1
gi|68567073|gb|AAY80002.1| ribonuclease PH [Sulfolobus acidocaldarius DSM 639]
gi|449035145|gb|AGE70571.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius N8]
gi|449037419|gb|AGE72844.1| exosome complex exonuclease Rrp41 [Sulfolobus acidocaldarius
Ron12/I]
Length = 243
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 27/239 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ +L A GSA + G+TKV+AAVYGPK ++ P+KAS+
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S +L + P T + ++V+ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
A+ AA AL DAGIPM+ L + A+ G +LD E++ M G A +
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLN--EQEDMWGEA-----DMP 187
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++VLP SL Q ++ +G M+ D++ E + + + + +L++K
Sbjct: 188 IAVLP---SLGQ-------VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALKNK 236
>gi|195330095|ref|XP_002031744.1| GM23883 [Drosophila sechellia]
gi|194120687|gb|EDW42730.1| GM23883 [Drosophila sechellia]
Length = 223
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 21/219 (9%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
+ LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 6 DTLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 65
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 66 LPQVIDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 125
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+P+K+ A+ E G +LDP + E Q + F + +
Sbjct: 126 LPLKYSFAAVHAIINEQGEYVLDPDQSETQHQRASFTFAF-----------------DSV 168
Query: 192 EHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLR 228
E ++ T G+ + + CL RAASA++ F R
Sbjct: 169 EGNLLLVRTKGSFKIAQFNDIECL--CRAASAEIFQFYR 205
>gi|154313781|ref|XP_001556216.1| hypothetical protein BC1G_05740 [Botryotinia fuckeliana B05.10]
gi|347832379|emb|CCD48076.1| similar to exosome complex subunit Rrp46 [Botryotinia fuckeliana]
Length = 256
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 23/239 (9%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
LHR GSAS+SQ ++ AV GP +++E PE+A+I+VI +P G G E+ E I
Sbjct: 14 LHRVDGSASFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGGTRERHLEAI 73
Query: 84 LKRTLQSICILTINPNTTTSVIIQVV---HDDGA------------LLPCAINAACAALV 128
L+ +L+ I ++ P T + +Q+ +D A LLP + + L+
Sbjct: 74 LQSSLRQIILIHNFPRTLIQITLQITSTPENDTAWSKLVQASSNLPLLPALLQTSVLTLL 133
Query: 129 DAGIP--MKHLAVAICCCSAESGYCILD-PTKLEEQKMKGFAYLVFPN--SILSVLPEGS 183
A IP M +V + + E+G I++ PT L+ Q L F + +L EGS
Sbjct: 134 SASIPLSMTLTSVLLALKNKETGTTIIENPTPLDCQDAASVHVLAFTSHGELLVAESEGS 193
Query: 184 -SLVQGEPM-EHG-IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
L + E + EHG + HG + DD H A + + F++ ++Q K+ DL
Sbjct: 194 FDLDEWEELYEHGKSLCCKGHGLAAEDDIMHEDGLENEAPSSMMMFVKSAVQEKVATDL 252
>gi|229584881|ref|YP_002843383.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.27]
gi|228019931|gb|ACP55338.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.27]
Length = 245
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA AL DAGIPM+ L + A+ G +LD + E+
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLDLNEAED 179
>gi|332796515|ref|YP_004458015.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
gi|332694250|gb|AEE93717.1| exosome complex exonuclease 1 [Acidianus hospitalis W1]
Length = 243
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A GSA G+TK+LAAVYGP+ ++ P +A +
Sbjct: 16 RLDGRRPDELRPMKMEVGVLKNADGSAIVEVGNTKILAAVYGPREMHPRHLALPNRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ P T+ V ++V+ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESQILVEQFPRTSIDVFMEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA A+VDAGIP++ L A+ A+ G +LD
Sbjct: 136 RLASLMAASLAVVDAGIPVRDLIAAVAVGKAD-GVVVLD 173
>gi|255644780|gb|ACU22892.1| unknown [Glycine max]
Length = 190
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P ++R + + +A GSA + G+TKV+AAVYGP+ +N+
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVR 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
A+ + R + + E +++++T+++ CILT + P + + +QV+ DG
Sbjct: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA-CILTHLLPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEEQKMKGFAYL 169
INAA AL DAGIPM+ L + CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA--GYLNSTPLLDLNYVEDSAGG----- 178
Query: 170 VFPNSILSVLPE 181
P+ L +LP+
Sbjct: 179 --PDVTLGILPK 188
>gi|304314830|ref|YP_003849977.1| exosome RNA binding protein [Methanothermobacter marburgensis str.
Marburg]
gi|302588289|gb|ADL58664.1| predicted exosome RNA binding protein [Methanothermobacter
marburgensis str. Marburg]
Length = 231
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 81/166 (48%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++LRPL IL RA GS+ G K+L AVYGP+ A +K + P++A I
Sbjct: 8 REDGRAFDELRPLRIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIR 67
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L+ IL P + V I+V+ +G
Sbjct: 68 CRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 127
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DAGIPM+ + VA C + +LD ++ E++
Sbjct: 128 RCAGITAASVALADAGIPMRDMVVA-CAAGKVNDQVVLDLSEEEDK 172
>gi|356562860|ref|XP_003549686.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P ++R + + +A GSA + G+TKV+AAVYGP+ +N+
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRNQQISSHALVR 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
A+ + R + + E +++++T+++ CILT + P + + +QV+ DG
Sbjct: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA-CILTHLLPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEEQKMKGFAYL 169
INAA AL DAGIPM+ L + CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA--GYLNSTPLLDLNYVEDSAGG----- 178
Query: 170 VFPNSILSVLPE 181
P+ L +LP+
Sbjct: 179 --PDVTLGILPK 188
>gi|50550057|ref|XP_502501.1| YALI0D06776p [Yarrowia lipolytica]
gi|49648369|emb|CAG80689.1| YALI0D06776p [Yarrowia lipolytica CLIB122]
Length = 287
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
R DGR N++R C + A GS+ G TKV+ V GP+ + ++A I
Sbjct: 59 RTDGRRWNEIRNFDCKINTHPTSADGSSYVEWGHTKVVCTVDGPREPDNRQNTTDRAVIS 118
Query: 64 V------------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
V I + R K E I++++ L+ + +NP T +V I V+
Sbjct: 119 VNVNVASFSTETRIKRQRND---KRLAEMNILIRQLLEEAVLTKLNPRTQIAVNITVIAQ 175
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
DG LLP INAAC A++DAG+P+ V+ C S ++D LEEQ +
Sbjct: 176 DGGLLPACINAACLAMIDAGVPLTDY-VSACSSGVYSNNALIDLNTLEEQDV 226
>gi|91772267|ref|YP_564959.1| exosome complex exonuclease Rrp41 [Methanococcoides burtonii DSM
6242]
gi|91711282|gb|ABE51209.1| Archaeal exosome complex RNA-binding protein [Methanococcoides
burtonii DSM 6242]
Length = 343
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKA--- 60
R DGR +++RP+ +L RA GS G+ KVLAAVYGP+ ++ + P +A
Sbjct: 15 RLDGRRVDEIRPMTVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRLQRPSEALVR 74
Query: 61 --------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
S+E +P R+ +I K + +++ + P V +V
Sbjct: 75 YRYNMAAFSVEDRIRPGPSRRSTEISK-------VSGEAFETVVMKQFYPGAVIDVFAEV 127
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+ D AINAA ALVDAGIPMK L VA C G ++D K E+
Sbjct: 128 LQADAGTRTAAINAATLALVDAGIPMKGL-VAACAVGKVDGQLVIDLNKPED 178
>gi|15678710|ref|NP_275826.1| exosome complex exonuclease Rrp41 [Methanothermobacter
thermautotrophicus str. Delta H]
gi|29336573|sp|O26779.1|ECX1_METTH RecName: Full=Probable exosome complex exonuclease 1
gi|295321490|pdb|2WNR|B Chain B, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321492|pdb|2WNR|D Chain D, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|295321494|pdb|2WNR|F Chain F, The Structure Of Methanothermobacter Thermautotrophicus
Exosome Core Assembly
gi|2621768|gb|AAB85188.1| ribonuclease PH [Methanothermobacter thermautotrophicus str. Delta
H]
Length = 240
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++LRPL IL RA GS+ G K+L AVYGP+ A +K + P++A I
Sbjct: 17 REDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L+ IL P + V I+V+ +G
Sbjct: 77 CRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPM+ + VA C +LD ++ E+++
Sbjct: 137 RCAGITAASVALADAGIPMRDMVVA-CAAGKVGDQVVLDLSEEEDKE 182
>gi|227830374|ref|YP_002832154.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus L.S.2.15]
gi|229579192|ref|YP_002837590.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.G.57.14]
gi|229582056|ref|YP_002840455.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus Y.N.15.51]
gi|284997880|ref|YP_003419647.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
gi|227456822|gb|ACP35509.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.S.2.15]
gi|228009906|gb|ACP45668.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.G.57.14]
gi|228012772|gb|ACP48533.1| exosome complex exonuclease 1 [Sulfolobus islandicus Y.N.15.51]
gi|284445775|gb|ADB87277.1| exosome complex exonuclease 1 [Sulfolobus islandicus L.D.8.5]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLD 173
>gi|157133589|ref|XP_001656263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|157134369|ref|XP_001663263.1| exosome complex exonuclease RRP41, putative [Aedes aegypti]
gi|108870517|gb|EAT34742.1| AAEL013045-PA [Aedes aegypti]
gi|108870766|gb|EAT34991.1| AAEL012812-PA [Aedes aegypti]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 79/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + C + + GSA QG+TKVLAAVYGP K + E+ +
Sbjct: 10 RLDGRRANELRRIQCKLGVFSQPDGSAYIEQGNTKVLAAVYGPHQAPAKKSSHEEVIVNC 69
Query: 65 IWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G + +E I L++ L + + P + V I+V+ DG
Sbjct: 70 QYSMATFSTGERKRRPRGDRKSQEMTIHLQQALSAAIKTELYPKSQIDVYIEVLMADGGN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++NAA AL+DAGI +K A C S ++D + LEE
Sbjct: 130 YCASVNAATLALIDAGICLKEYVCA-CTASLAGKIPLMDVSNLEE 173
>gi|41152247|ref|NP_957033.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|37747963|gb|AAH59525.1| Exosc4 protein [Danio rerio]
gi|46403217|gb|AAS92628.1| exosome complex exonuclease RRP41 [Danio rerio]
gi|157423431|gb|AAI53618.1| Exosc4 protein [Danio rerio]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + S+ +A GSA QG+TK LA VYGP G++ ++A I
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA ALVDAGIPM+ +C CSA
Sbjct: 133 GNYSACVNAATLALVDAGIPMRDY---VCACSA 162
>gi|385775987|ref|YP_005648555.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
gi|323474735|gb|ADX85341.1| exosome complex exonuclease 1 [Sulfolobus islandicus REY15A]
Length = 245
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLD 173
>gi|227827677|ref|YP_002829457.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.14.25]
gi|238619848|ref|YP_002914674.1| exosome complex exonuclease Rrp41 [Sulfolobus islandicus M.16.4]
gi|227459473|gb|ACP38159.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.14.25]
gi|238380918|gb|ACR42006.1| exosome complex exonuclease 1 [Sulfolobus islandicus M.16.4]
Length = 245
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RIDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLD 173
>gi|118484971|gb|ABK94350.1| unknown [Populus trichocarpa]
Length = 53
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK 48
ME+DR DGR+P+QLRPL+CS ++LHRAHGSASWSQGDTKVLAAV K
Sbjct: 1 MEIDRDDGRSPSQLRPLSCSHNVLHRAHGSASWSQGDTKVLAAVMDLK 48
>gi|16082286|ref|NP_394747.1| exosome complex exonuclease Rrp41 [Thermoplasma acidophilum DSM
1728]
gi|29336949|sp|Q9HIP2.1|ECX1_THEAC RecName: Full=Probable exosome complex exonuclease 1
gi|10640637|emb|CAC12415.1| RNase PH (yeast SIK6) related protein [Thermoplasma acidophilum]
Length = 248
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 41/246 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR+ N+LRP+ +L+RA GSA G K++ VYGPK A K
Sbjct: 18 RLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVK 77
Query: 53 KNENPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N S++ +P RT +I K ++ L S ++ P V I+V
Sbjct: 78 ARYNMAAFSVDERKRPGPDRRTMEISK-------VISEALSSSIMIEQFPRAEIDVYIEV 130
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+ D + AA AL DAG+PM+ + V C G+ +LD +K E+ +
Sbjct: 131 LQADAGTRIAGLTAATVALADAGVPMRDMVVG-CTAGKVDGHMVLDLSKEEDN----YGE 185
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
P +I+ P I+ G ++ D+ + ++ A+ ++S R
Sbjct: 186 ADIPIAIM-------------PKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQR 232
Query: 229 RSLQSK 234
+L +K
Sbjct: 233 EALLNK 238
>gi|125984746|ref|XP_001356137.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|195161898|ref|XP_002021795.1| GL26697 [Drosophila persimilis]
gi|54644456|gb|EAL33197.1| GA13761 [Drosophila pseudoobscura pseudoobscura]
gi|194103595|gb|EDW25638.1| GL26697 [Drosophila persimilis]
Length = 249
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 9/165 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENP----- 57
R DGR P++LR + C + + GSA QG+TKVLAAVYGP G K N
Sbjct: 14 RLDGRRPHELRHIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGMKTETNDVIINC 73
Query: 58 --EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+A+ + + + E+++ L++ L + + P + + ++V+ DGA
Sbjct: 74 QYSQATFATAERKNRPRGDRKSLEFKMYLEQALSAAIKSELYPRSQIDIYVEVLQADGAN 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D + EE
Sbjct: 134 YAVALNAATLALIDAGICLNEFIVACTASLSKSSIPLTDISHTEE 178
>gi|357625482|gb|EHJ75909.1| putative exosome complex exonuclease RRP41 [Danaus plexippus]
Length = 251
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 19/172 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIE 63
R DGR PN+LR + C + + GSA QG+TKVLAAVYGP + + + E +
Sbjct: 13 RLDGRRPNELRRIRCKLGVFTQPDGSAYLEQGNTKVLAAVYGPHQVRRFRKSSAEGVVVN 72
Query: 64 VIWKPRTGQIG---------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ T G + +E + L++ L + + P + + ++V+ DG
Sbjct: 73 CQYSMATFSTGERKNRPRGDRKSQEMSMHLRQALTAAIKTEMYPRSQIDIYVEVLQADGG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------ILDPTKLEE 160
++NA+ AL+DAGIP+K +C CSA + +LD +EE
Sbjct: 133 AYCASVNASTLALIDAGIPLK---AYVCSCSASMAWLDGVPEPLLDVGHVEE 181
>gi|16183595|gb|AAL13710.1| GM01970p [Drosophila melanogaster]
Length = 233
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 21/222 (9%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+P+K+ A+ E G +LDP + E + F + +
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRASFTFAF-----------------DSV 174
Query: 192 EHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 231
E ++ T G+ + + CL RAASA++ F R +
Sbjct: 175 EGNLLLIQTKGSFKIAQFNDIECL--CRAASAEIFQFYRNQV 214
>gi|428181007|gb|EKX49872.1| hypothetical protein GUITHDRAFT_104267 [Guillardia theta CCMP2712]
Length = 482
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 24/189 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR PN+LR + L A GSA + G+TK++A V GP+ T +++ ++
Sbjct: 13 RIDGRRPNELRKVVIKHGNLQNATGSAIFHHGNTKIVATVCGPRECTSRSKELHDRAVVT 72
Query: 63 -EVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
VI P + + + E E ++++T + + +I P + + +++V DG
Sbjct: 73 CSVIVSPSAYSHRRKRNRGDRVVAELESLVRQTFEELIFTSIFPRSQIDISVEIVQADGP 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC---ILDPTKLEEQKMKGFAYLVF 171
+ C +NA AL+DAG+P+K +C C E GY +L EE+ +G
Sbjct: 133 VRACVVNAVSMALIDAGLPIKDF---LCAC--EVGYIDGQLLLDMNGEEESARG------ 181
Query: 172 PNSILSVLP 180
P+ +S +P
Sbjct: 182 PDLYVSYMP 190
>gi|413948423|gb|AFW81072.1| hypothetical protein ZEAMMB73_833729 [Zea mays]
Length = 236
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 26/171 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--NPEKASI 62
R DGR PN++R L ++ RA GSA + G+T+V+AAVYGP+ K + N ++A +
Sbjct: 11 RVDGRRPNEMRQLKGEVGVVARADGSALFEMGNTRVIAAVYGPREVQNKGQQVNSKEALV 70
Query: 63 EVIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ G KP+ E +++++T+++ + + P++ + +QV
Sbjct: 71 RCEYRMAEFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPHSQIDIYVQV----- 125
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
L INAA AL DAGIPM+ +A + CSA GY +LD LE+
Sbjct: 126 -LRSACINAATLALADAGIPMRDIATS---CSA--GYLCSTPLLDLNYLED 170
>gi|148642302|ref|YP_001272815.1| exosome complex exonuclease Rrp41 [Methanobrevibacter smithii ATCC
35061]
gi|148551319|gb|ABQ86447.1| ribonuclease PH, Rph [Methanobrevibacter smithii ATCC 35061]
Length = 234
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E+ R DGR N+LRP+ +L RA GSA G K+L AVYGP+ ++
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPR----------ESY 53
Query: 62 IEVIWKPRTGQI-----------------GKPEKEYEI--ILKRTLQSICILTINPNTTT 102
I + +P TG I G + EI I L+ +L P +
Sbjct: 54 IRRLLEPNTGVIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMV 113
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
+ I+V+ +G I AA ALVDAGIPMK + V C + ILD +++E+++
Sbjct: 114 DIYIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVG-CAAGKVNDEIILDLSEVEDKE 172
>gi|255579328|ref|XP_002530509.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223529966|gb|EEF31893.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 241
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 17/157 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P ++R L + +A GSA + G+TKV+AAVYGP+ +++ ++A +
Sbjct: 10 RLDGRRPMEMRQLRAQIGAVSKADGSAVFEMGNTKVIAAVYGPREVQNRSQQIIDQALVR 69
Query: 64 ---VIWKPRTG-QIGKPE-----KEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ TG ++ KP+ E +++++T++ CILT + P + + +QV+ DG
Sbjct: 70 CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
INAA AL DAGIPM+ L + CSA GY
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA--GY 160
>gi|385773349|ref|YP_005645915.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
gi|323477463|gb|ADX82701.1| exosome complex exonuclease 1 [Sulfolobus islandicus HVE10/4]
Length = 245
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P +LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 16 RIDGRKPEELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIVLD 173
>gi|305663898|ref|YP_003860186.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
gi|304378467|gb|ADM28306.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignisphaera aggregans
DSM 17230]
Length = 242
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P LRP+ +L A GSA G T VLAAVYGP+ ++E ++A I
Sbjct: 14 RHDGRRPEDLRPIRMEVGVLKNADGSAIVEIGKTVVLAAVYGPREVVPRHEEIVDRAVIR 73
Query: 64 VIWKPRT----GQIGKP-----EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ + G+ P E E +++ L+ I ++ P T + ++V++ +G
Sbjct: 74 CRYRMLSFSTLGERKSPAPSRREIELSKVIREALEPAIISSMYPRTAIDIFVEVINANGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIP+ L A+ + G +LD +LE+
Sbjct: 134 TRTAGITAASLALADAGIPLADLVAAVAVGKID-GVIVLDLDELED 178
>gi|357512489|ref|XP_003626533.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
gi|355501548|gb|AES82751.1| Exosome complex exonuclease RRP41 [Medicago truncatula]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 17/157 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R+DGR P ++R + + +A GSA + G+TKV+AAVYGP+ + + +KA +
Sbjct: 10 RSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMSDKALVR 69
Query: 64 VIWKPRTGQIG----KPE-----KEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ G KP+ E +++++T++ CILT + P + + +QV+ DG
Sbjct: 70 CEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEE-CILTHLMPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
INAA AL DAGIPM L + CSA GY
Sbjct: 129 GTRSACINAATLALADAGIPMLDL---VTSCSA--GY 160
>gi|281204136|gb|EFA78332.1| Exosome complex exonuclease rrp41 [Polysphondylium pallidum PN500]
Length = 248
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 90/172 (52%), Gaps = 20/172 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR N++R L I +RA GSA + QG+TK+ AVYGP+ +I
Sbjct: 13 RIDGRRNNEIRRLNMKMGIFNRADGSAYYEQGNTKITVAVYGPREVASNQRMLHDRAIVN 72
Query: 63 ----EVIWKPRTGQIGKPEKE-----YEI--ILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + T + KP ++ YEI ++K+ +S +T+ P + + +QV+
Sbjct: 73 CEYSQAAFSSATDR--KPTRKSDKQSYEIASLIKQAFESTIQITLFPRSQIDIYVQVLQA 130
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQ 161
DG L A+NAA A++DAG+PM+ IC CSA G +LD ++EE+
Sbjct: 131 DGGLKAAALNAATLAVIDAGLPMRDF---ICACSATFIEGVPLLDMNQMEER 179
>gi|301773434|ref|XP_002922118.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 2
[Ailuropoda melanoleuca]
Length = 240
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +LR + + +A GSA QG+TK LA VYGP + + +A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEAKGRRD---RALVNC 69
Query: 65 IWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 70 QYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGT 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C CSA
Sbjct: 130 YAACVNAATLAVLDAGIPMRDF---VCACSA 157
>gi|453089972|gb|EMF18012.1| hypothetical protein SEPMUDRAFT_15620, partial [Mycosphaerella
populorum SO2202]
Length = 197
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 78/158 (49%), Gaps = 10/158 (6%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L RA GS +S V+A V GP +++E P++A+IEV +P +G G E+ E +
Sbjct: 10 LARADGSTVFSDDLYTVIAGVNGPVDVQRRDELPDQAAIEVNLRPTSGVGGPRERWLETV 69
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIP 133
++ L+SI ++ ++P T V +Q+ + D + LP +NAA ALVD G+P
Sbjct: 70 IQSVLKSIVLVHMHPRTLIQVTLQITKEPATKFRKTTTDISTLPALLNAAFIALVDGGLP 129
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M A+ A +G IL P Q L F
Sbjct: 130 MATTMSAVLAVVATNGETILSPNANAIQNSSSVHALAF 167
>gi|225454436|ref|XP_002280302.1| PREDICTED: exosome complex component RRP41 [Vitis vinifera]
gi|147867252|emb|CAN81194.1| hypothetical protein VITISV_022853 [Vitis vinifera]
gi|297745390|emb|CBI40470.3| unnamed protein product [Vitis vinifera]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 17/157 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P ++R + + +A GSA + G+TKV+AAVYGP+ +++ ++
Sbjct: 10 RLDGRRPMEMRQIRGEIGAVAKADGSAFFEMGNTKVIAAVYGPREVENRSQQISDQALVR 69
Query: 63 --EVIWKPRTG-QIGKPE-----KEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
+ TG ++ KP+ E +++++T+++ CILT + P + + +QV+ DG
Sbjct: 70 CEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEA-CILTHLMPRSQIDIFVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150
INAA AL DAGIPM+ L + CSA GY
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA--GY 160
>gi|408382267|ref|ZP_11179812.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
gi|407814923|gb|EKF85545.1| exosome complex exonuclease Rrp41 [Methanobacterium formicicum DSM
3637]
Length = 249
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR ++LRPL +L RA GSA GD KVLAAVYGP+ ++ P A +
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSAYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L L P +T + I+V+ +G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVIQAEGGT 145
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPM+ + V+ C G I+D ++ E+++
Sbjct: 146 RCAGITAASVALADAGIPMRDM-VSACAAGKADGQVIMDLSEWEDKE 191
>gi|288869794|ref|ZP_06409500.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
gi|288860272|gb|EFC92570.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2374]
Length = 234
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E+ R DGR N+LRP+ +L RA GSA G K+L AVYGP+ ++
Sbjct: 4 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPR----------ESY 53
Query: 62 IEVIWKPRTGQI-----------------GKPEKEYEI--ILKRTLQSICILTINPNTTT 102
I + +P TG I G + EI I L+ +L P +
Sbjct: 54 IRRLLEPNTGVIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMV 113
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
+ I+V+ +G I AA ALVDAGIPMK + V C + +LD +++E+++
Sbjct: 114 DIYIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVG-CAAGKVNDKIVLDLSEVEDKE 172
>gi|171185834|ref|YP_001794753.1| exosome complex exonuclease Rrp41 [Pyrobaculum neutrophilum V24Sta]
gi|254782538|sp|B1Y978.1|ECX1_THENV RecName: Full=Probable exosome complex exonuclease 1
gi|170935046|gb|ACB40307.1| exosome complex exonuclease 1 [Pyrobaculum neutrophilum V24Sta]
Length = 246
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + S ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L + + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVIGVSVGLVD-GTVVLDLNGLEDQYGEG 183
>gi|356573193|ref|XP_003554748.1| PREDICTED: exosome complex component RRP41-like [Glycine max]
Length = 241
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 95/192 (49%), Gaps = 28/192 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P ++R + + +A GSA + G+TKV+AAVYGP+ +++
Sbjct: 10 RLDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQISSHALVR 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
A+ + R + + E +++++T+++ CILT + P + + +QV+ DG
Sbjct: 70 CEYCMANFSTGDRMRKSKGDRRSTEISLVIRQTMEA-CILTHLLPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEEQKMKGFAYL 169
INAA AL DAGIPM+ L + CSA GY +LD +E+
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA--GYLNSTPLLDLNYVEDSAGG----- 178
Query: 170 VFPNSILSVLPE 181
P+ L +LP+
Sbjct: 179 --PDVTLGILPK 188
>gi|383319305|ref|YP_005380146.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
gi|379320675|gb|AFC99627.1| archaeal exosome-like complex exonuclease 1 [Methanocella conradii
HZ254]
Length = 252
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR N+LRP+ +L RA GS G KV+AAVYGP+ ++ +N +A +
Sbjct: 13 RLDGRGLNELRPIRFKAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQNASRAIVR 72
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + L+S+ + + P + + ++++ D
Sbjct: 73 YRYNMAAFSVEERKRPGPDRRSIEISKVSREALESVIMQELYPRSAIDIFVEILQADAGT 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL DAGIPM+ L V+ C G +LD K E+
Sbjct: 133 RVAGINAASVALADAGIPMRCL-VSACAVGKVDGELVLDLNKDED 176
>gi|167044148|gb|ABZ08830.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG5E24]
Length = 245
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 39/245 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R+DGR N+ R + +L A GSA G K+LA V+GP+ K NP+ +
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + +E EI +LK L+ IL P T V ++V+ DG
Sbjct: 77 VRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKMKG---FAYLV 170
A++AA AL DAGIPM+ + +C C+A + ILD E+Q + Y+
Sbjct: 137 RCAALDAASVALADAGIPMRDM---VCSCAAGKAADTLILDVNNEEDQAGQADMPIGYM- 192
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERGRAASAKLSDFLRR 229
PN G IT + G ++ D++ C+E G ++ + +
Sbjct: 193 -PN-------------------FGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKN 232
Query: 230 SLQSK 234
+L+ K
Sbjct: 233 ALREK 237
>gi|222444527|ref|ZP_03607042.1| hypothetical protein METSMIALI_00139 [Methanobrevibacter smithii
DSM 2375]
gi|222434092|gb|EEE41257.1| exosome complex exonuclease 1 [Methanobrevibacter smithii DSM 2375]
Length = 233
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E+ R DGR N+LRP+ +L RA GSA G K+L AVYGP+ ++
Sbjct: 3 EMIREDGRKYNELRPIKIEAGVLERADGSAYLEVGGNKILVAVYGPR----------ESY 52
Query: 62 IEVIWKPRTGQI-----------------GKPEKEYEI--ILKRTLQSICILTINPNTTT 102
I + +P TG I G + EI I L+ +L P +
Sbjct: 53 IRRLLEPNTGVIRCRYNMAPFSVDDRKRPGPDRRSSEISKITADALRPALMLENYPRSMV 112
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
+ I+V+ +G I AA ALVDAGIPMK + V C + +LD +++E+++
Sbjct: 113 DIYIEVIEAEGGTRCAGITAASVALVDAGIPMKDIVVG-CAAGKVNDKIVLDLSEVEDKE 171
>gi|24645688|ref|NP_650001.2| Rrp46 [Drosophila melanogaster]
gi|23170911|gb|AAF54530.3| Rrp46 [Drosophila melanogaster]
gi|212287964|gb|ACJ23457.1| FI06805p [Drosophila melanogaster]
Length = 233
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 90/175 (51%), Gaps = 3/175 (1%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 183
+P+K+ A+ E G +LDP + E + FA+ ++L + +GS
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGS 186
>gi|146302862|ref|YP_001190178.1| exosome complex exonuclease Rrp41 [Metallosphaera sedula DSM 5348]
gi|145701112|gb|ABP94254.1| ribosomal RNA-processing protein RRP41/SKI6 [Metallosphaera sedula
DSM 5348]
Length = 245
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 88/165 (53%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A GS+ G+TK++AAVYGP+ ++ P +A++
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S ++ P ++ V ++V+ D
Sbjct: 76 VRYHMTPFSTDERKSPVPSRREIELSKVIREALESSILVEQFPRSSIDVFMEVIQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA A+VDAGIP+K + A+ A+ G +LD + E+
Sbjct: 136 RLASLMAASLAVVDAGIPVKDVIAAVAVGKAD-GVVVLDLNEPED 179
>gi|154419828|ref|XP_001582930.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121917168|gb|EAY21944.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 241
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------- 57
R DGR PN++R + + GS+ + G T+V+A ++GP+ + +N
Sbjct: 11 RIDGRPPNEMRLVEAKIGTIPGCTGSSHFKIGQTEVIAQIFGPR-DNRSGDNAAEIRVTF 69
Query: 58 EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
E A + + + +E E+I+KRT + + P++ + I V+ DDG+
Sbjct: 70 EYADFAKVPHASDTSMTRRGRESEVIMKRTFEEAIKRELFPHSKILIAITVIQDDGSCQS 129
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILS 177
AINAA AL+DAGIPM V++ + C LD + E FP +S
Sbjct: 130 AAINAATLALIDAGIPMFDFVVSMTVALYDDK-CFLDAGRAESNAR-------FPVLEVS 181
Query: 178 VLPEGSSLV 186
+ P S ++
Sbjct: 182 IFPSTSEIL 190
>gi|240104093|ref|YP_002960402.1| exosome complex exonuclease Rrp41 [Thermococcus gammatolerans EJ3]
gi|259645401|sp|C5A2B9.1|ECX1_THEGJ RecName: Full=Probable exosome complex exonuclease 1
gi|239911647|gb|ACS34538.1| 3'-5' exoribonuclease, exosome complex exonuclease 1, Rrp41p-like
protein (Rrp41p) [Thermococcus gammatolerans EJ3]
Length = 249
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LR + +L A GSA G K+LAAVYGP+ K+ + P+ A +
Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAG+PM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGVPMRDL-VAACAAGKIDGEIVLDLNKDED 180
>gi|223477909|ref|YP_002582206.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
gi|214033135|gb|EEB73963.1| Exosome complex exonuclease 1 [Thermococcus sp. AM4]
Length = 248
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LR + +L A GSA G K+LAAVYGP+ K+ + P+ A +
Sbjct: 16 RIDGRKKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 75
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 76 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAG+PM+ L VA C G +LD K E+
Sbjct: 136 RVAGITAASLALADAGVPMRDL-VAACAAGKIDGEIVLDLNKDED 179
>gi|119872348|ref|YP_930355.1| exosome complex exonuclease Rrp41 [Pyrobaculum islandicum DSM 4184]
gi|254782537|sp|A1RST0.1|ECX1_PYRIL RecName: Full=Probable exosome complex exonuclease 1
gi|119673756|gb|ABL88012.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum islandicum
DSM 4184]
Length = 246
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + I+ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW-------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + K +E EI IL+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAG+ M+ L + + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGVYMRDLVIGVSVGLVD-GAVVLDLNGLEDQYGEG 183
>gi|325959906|ref|YP_004291372.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
gi|325331338|gb|ADZ10400.1| exosome complex exonuclease 1 [Methanobacterium sp. AL-21]
Length = 243
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
RAD R ++LR + +L RA GSA G KVLAAVYGP+ ++ P KA +
Sbjct: 19 RADNRAFDELRKMKIEAGVLERADGSAYLEIGGNKVLAAVYGPRELFVRRLMQPNKAVLR 78
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + L L P +T V I+V+ +G
Sbjct: 79 CKYNMAPFSVDDRKRPGPDRRSVEISKLASQALTPAVFLEKFPRSTIDVFIEVIEAEGGT 138
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPM+ + VA C G ILD +++E+++
Sbjct: 139 RCAGITAASVALADAGIPMRDMVVA-CAAGKSDGKVILDLSEVEDKE 184
>gi|149236726|ref|XP_001524240.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451775|gb|EDK46031.1| exosome complex exonuclease RRP41 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 244
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP T + + N ++A++
Sbjct: 13 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPTSRAQMNQDRANV 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + K E L+RT + + +L + P T ++ +QV++ DG
Sbjct: 73 EVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQLILLHLYPRTNITINVQVLNQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
+L N+ AL+DAGI M +I C + +LD LEE M
Sbjct: 133 GMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQS-PLLDLNNLEENDM 181
>gi|221101900|ref|XP_002160475.1| PREDICTED: exosome complex component RRP41-like [Hydra
magnipapillata]
Length = 244
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR ++LR + I +A GSA QG+TKV+A+VYGP + +++
Sbjct: 13 RFDGRKCHELRKITAKKGIFSQADGSAYIEQGNTKVIASVYGPHEVSNRSKTLHDSTLIN 72
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
A+ + + + + E ++L++T + + + P + + +QV+ DG
Sbjct: 73 CQFSMATFSMSERKNRPKGDRKSTEISMLLEKTFATAIMTELYPRSQIDIYVQVIQSDGG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
++ IN A AL+DAG+PMK +C C+ S Y + D LEE
Sbjct: 133 VIAACINVATLALIDAGVPMKDF---VCACT--SSYVQEKNLTDINHLEE 177
>gi|302348936|ref|YP_003816574.1| exosome complex exonuclease 1 [Acidilobus saccharovorans 345-15]
gi|302329348|gb|ADL19543.1| Probable exosome complex exonuclease 1 [Acidilobus saccharovorans
345-15]
Length = 242
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P+++RP+ +L A GSA S G TKVLAAVYGP+ +K P++AS+
Sbjct: 15 RLDGRLPDEMRPVDMKVGVLSNADGSAIVSYGKTKVLAAVYGPREPLQKYTVLPDRASLF 74
Query: 64 VIW--KPRTGQIGK----PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + P + + K +E EI +L+ L+ + I + P T V ++V+ DG
Sbjct: 75 VRYHMAPFSTEERKSPVPTRREVEISKVLREALEPVVITELFPRTVIEVYVEVLQSDGGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
+ AA AL DAGIPM+ L + ++ +LD
Sbjct: 135 RTASATAASLALADAGIPMRALVAGVAIGKVDN-VVVLD 172
>gi|324522716|gb|ADY48116.1| Exosome complex exonuclease RRP41 [Ascaris suum]
Length = 249
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P+Q+R + + +A GSA QG+TKVL AVYGP ++N E
Sbjct: 10 RLDGRKPHQIRNINYKLGVYTQADGSAYLEQGNTKVLCAVYGPHEPRQRNRTQEDRCTVN 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
A+ + + + E+ ++++ ++ ++ P+ + +++ DG+
Sbjct: 70 CQYSMATFSTNERKERPRGDRRSMEFARLMEKAFETAILVENYPHAQIDIFCELLQADGS 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
L +NAA AL DAG+PM+ L A C A G D + EE +
Sbjct: 130 HLAACVNAATLALADAGVPMRGLVAAASCACALDGTPCADVSAREESNV 178
>gi|452003219|gb|EMD95676.1| hypothetical protein COCHEDRAFT_1019334 [Cochliobolus
heterostrophus C5]
Length = 254
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 75/151 (49%), Gaps = 15/151 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---------NE 55
R DGR N+LR + S A GS+ G+TKVL +V GP A +K+ N+
Sbjct: 14 RLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVTGPAAESKQGGGQRGGISND 73
Query: 56 NPEKASIEVIWKPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
K +E+ + +G + K E E L+ + + L + P +T ++ + VV
Sbjct: 74 KLAKIDVEINFAGFSGVDRRKRKTDKKTNEMEHCLRSAFEGVLSLHLYPRSTITIHVHVV 133
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVA 140
DG+LL +NAA ALVDAGIPM VA
Sbjct: 134 SQDGSLLAACLNAATLALVDAGIPMTDYLVA 164
>gi|440293108|gb|ELP86270.1| exosome complex exonuclease RRP41, putative [Entamoeba invadens
IP1]
Length = 238
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P ++R A GSA G+T V A V GP G ++N + A ++V
Sbjct: 10 RVDGRRPTEMRKCEMELGFEKSADGSARVRMGNTLVEAVVSGPMEGKRRNHDS--AELKV 67
Query: 65 IWKPRT--------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ T + E +LK+ + + ++ P T+ + +QV+ DDG++
Sbjct: 68 FFSQATFATRRRRERMFDRNMAETSELLKQMYEQVVLVKQLPETSIEIRVQVLQDDGSVN 127
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
AINA AL+DAGIPM + SAE GY ++D K EE
Sbjct: 128 AAAINACTLALIDAGIPMSDI-----VSSAEGGYISGRMVVDMGKDEE 170
>gi|299742531|ref|XP_001832547.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
gi|298405226|gb|EAU89296.2| exosome component 4 [Coprinopsis cinerea okayama7#130]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 92/198 (46%), Gaps = 11/198 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R+DGR +LR L+ S A GSA S G T+VL +V+GP+ A + + ++A+I
Sbjct: 17 RSDGRRQYELRDLSIDLSRHGEADGSALISHGLTQVLVSVHGPREAKMRSHTFHDRANIN 76
Query: 64 V---IWKPRTGQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + TG+ K K E+ +K T + + ++ P + + IQ++ DG
Sbjct: 77 VEVTVASFSTGERRKRLKGDKRILEFAATIKSTFEPVVRTSLYPRSQIDIYIQILQQDGG 136
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
L IN AL++AGIPM AI S +LD T LEE + V P S
Sbjct: 137 TLQTCINGTTLALINAGIPMSDFVCAI-SGGVHSTSPMLDLTTLEENDVPHVTVAVMPKS 195
Query: 175 ILSVLPEGSSLVQGEPME 192
VL + + E E
Sbjct: 196 KKVVLVTMETRLHVERFE 213
>gi|167044981|gb|ABZ09646.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8G2]
Length = 245
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 31/241 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R+DGR N+ R + +L A GSA G K+LA V+GP+ K NP+ +
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + +E EI +LK L+ IL P T V ++V+ DG
Sbjct: 77 VRYHMEPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGGS 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKMKGFAYLVFPN 173
A++AA AL DAGIPM+ + +C C+A + ILD E+Q + + +
Sbjct: 137 RCAALDAASVALADAGIPMRDM---VCSCAAGKAADALILDVNNEEDQAGQADMPIGYMP 193
Query: 174 SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQS 233
++ + +L+Q G ++ D++ C+E G ++ + + +L+
Sbjct: 194 NLGKI-----TLLQ------------LDGVLTTDEFKKCIELGLEGCKQVYEIQKNALRE 236
Query: 234 K 234
K
Sbjct: 237 K 237
>gi|167044510|gb|ABZ09185.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG6J21]
Length = 245
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 108/245 (44%), Gaps = 39/245 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R+DGR N+ R + +L A GSA G K+LA V+GP+ K NP+ +
Sbjct: 17 RSDGRKVNETRKVTIKVGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHMSNPDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + +E EI +LK L+ IL P T V ++V+ DG
Sbjct: 77 VRYHMAPFSVSERKNPAPSRREIEISKVLKEALEPAVILEKFPRTAIDVYLEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKG---FAYLV 170
A++AA AL DAGIPM+ + +C C+A + ILD E+Q + Y+
Sbjct: 137 RCAALDAASVALADAGIPMRDM---VCSCAAGKVADALILDVNNEEDQAGQADMPIGYM- 192
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERGRAASAKLSDFLRR 229
PN G IT + G ++ D++ C+E G ++ + +
Sbjct: 193 -PN-------------------FGKITLLQLDGVLTTDEFKKCIELGIEGCKQVYEIQKN 232
Query: 230 SLQSK 234
+L+ K
Sbjct: 233 ALREK 237
>gi|320167599|gb|EFW44498.1| exosome component 4 [Capsaspora owczarzaki ATCC 30864]
Length = 252
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--------N 56
R DGR PN+LR + + +A GSA QG+TK+LA VYGP ++KN+ N
Sbjct: 15 RIDGRRPNELRRIQARVGVFMQADGSAYIEQGNTKILATVYGPHEVSRKNKPLHDRAIIN 74
Query: 57 PEK--ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
E AS + + + K + ++ + + + P + + +QV+ DG
Sbjct: 75 CEYRVASFATAERKKPVRTDKRALDLAAAVRGAFEGAVMTQLYPRSQIDIFLQVLQSDGG 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCS 145
INAA AL+DAGI MK +C CS
Sbjct: 135 NRAVCINAATLALMDAGIAMKDF---VCACS 162
>gi|410923699|ref|XP_003975319.1| PREDICTED: exosome complex component RRP41-like [Takifugu rubripes]
Length = 245
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TKVLA VYGP G++ ++A I
Sbjct: 13 RIDGRKATELRKIQARMGVFAQADGSAYLEQGNTKVLAVVYGPHEMRGSRSRARHDRAVI 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLFPRSQIDIYVKILQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
+NAA A++DAGIPM+ +C C+
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDY---VCACT 161
>gi|196014350|ref|XP_002117034.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
gi|190580256|gb|EDV20340.1| hypothetical protein TRIADDRAFT_61054 [Trichoplax adhaerens]
Length = 240
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 83/166 (50%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R D + P L C + +A GSA +TK++ AVYGP+ KK E +A++
Sbjct: 2 RKDYQLPKFYDRLVCRTGAVSQAVGSAYIELRNTKIICAVYGPREVAKKQEFNIQATVAC 61
Query: 65 IWKPRTGQIGK--------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
K T + EKEY I+ + LQ + L P + + I V+ +DG++L
Sbjct: 62 ELKFATFSCRRRRRHIQDSQEKEYSQIIVQALQPVVRLDKYPKSQIDIFITVLQNDGSVL 121
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESG-YCILDPTKLEEQ 161
AI AA AL D+GI + VAI CC + G ++DPT LEE+
Sbjct: 122 GGAITAASVALADSGIEI--FDVAIGCCLRQIGDLSLIDPTYLEEE 165
>gi|67471870|ref|XP_651847.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56468626|gb|EAL46457.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449702785|gb|EMD43355.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 238
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/168 (33%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R + L A GSA G+T V A V+GP G ++N E A + V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRNR--EGAELMV 67
Query: 65 IWKPRTGQIGKPEK--------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ T K + E +LK+ + I I + P T + +QV+ DDG++
Sbjct: 68 SYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGSVT 127
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INA AL+DAGIPM + A AE GY ++D K EE
Sbjct: 128 AAVINACTLALIDAGIPMIDIVAA-----AEGGYIDGKMVVDMNKDEE 170
>gi|71981632|ref|NP_001021274.1| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
gi|6226696|sp|Q17533.2|EXOS4_CAEEL RecName: Full=Putative exosome complex component RRP41; AltName:
Full=Ribosomal RNA-processing protein 41
gi|3873830|emb|CAA97771.3| Protein EXOS-4.1, isoform a [Caenorhabditis elegans]
Length = 240
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP G +K +I
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 65 IWKP-------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ R + K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
L +NA AL DAGIPMK +A A C G I+D T EE +
Sbjct: 130 LAACVNATSLALADAGIPMKGIASA-ATCGVVDGKPIVDLTSREETDL 176
>gi|147919675|ref|YP_686581.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
gi|110621977|emb|CAJ37255.1| putative exosome complex exonuclease 1 [Methanocella arvoryzae
MRE50]
Length = 253
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR P LRP+ +L RA GS G KV+AAVYGP+ A +
Sbjct: 13 RLDGRGPFDLRPIKFQAGVLKRADGSCYLEFGGNKVMAAVYGPREVHPRHLQQASNAIVR 72
Query: 53 KNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
N S+E +P G + EI + + L+S+ + + P + + ++++
Sbjct: 73 YRYNMASFSVEERKRP-----GPDRRSIEISKVSREALESVILKELYPRSAIDIFVEILQ 127
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
D INAA AL DAGIPMK L V+ C +LD K E+
Sbjct: 128 ADAGTRVAGINAASVALADAGIPMKCL-VSACAVGKADDTLVLDLNKDED 176
>gi|40217446|emb|CAE46379.1| ribonuclease PH [uncultured archaeon]
gi|268323829|emb|CBH37417.1| Probable exosome complex exonuclease 2 [uncultured archaeon]
Length = 242
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R GR +LRP+ +L RA GS + GD K LAAVYGP+ ++ +N + A ++
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGDNKALAAVYGPREMHPRHFQNAKMAVVK 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ + R G + +E ++ ++ L + + + P T V ++V+ D
Sbjct: 74 YRYNMAPFSVDDRKRPGP-DRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
INAA AL DAGIPM+ L ++ + G +LD
Sbjct: 133 TRTAGINAASVALADAGIPMRDLVSSVAIGKID-GEVVLD 171
>gi|224130470|ref|XP_002320845.1| predicted protein [Populus trichocarpa]
gi|118489833|gb|ABK96716.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222861618|gb|EEE99160.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 15/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P ++R L + +A GSA + G+TKV+AAVYGP+ +++
Sbjct: 10 RLDGRRPMEMRQLRAQIGAVAKADGSAVFEMGNTKVIAAVYGPREVQNRSQQINDQALVR 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
A+ + R + + E +++++ ++ CILT + P + + +QV+ DG
Sbjct: 70 CEYSMANFSTGDRRRKPKGDRRSTEISLVIRQAMEE-CILTNLMPRSQIDIYVQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
INAA AL DAGIPM+ L + CSA
Sbjct: 129 GTRSACINAATLALADAGIPMRDL---VTSCSA 158
>gi|321262921|ref|XP_003196179.1| hypothetical Protein CGB_I2130C [Cryptococcus gattii WM276]
gi|317462654|gb|ADV24392.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 299
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 75/285 (26%), Positives = 119/285 (41%), Gaps = 54/285 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P QLRPL S L RA GSA ++ G VLA+ GP + E P+KA+ EV
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 68
Query: 65 IWKPRTGQIGKPEKEYEIILK-------------RTLQSICILTINPNTTTSVIIQVV-- 109
+P G P + L+ R+L + + ++ P+T +V V+
Sbjct: 69 NHRPLEGVGATPSRALVTTLETIFPPVLSLEKHPRSLVQLVVQSLMPSTCRAVYGSVIGT 128
Query: 110 --------------HDDGALLP---------------------CAINAACAALVDAG-IP 133
+D+ A +P +INA+ AL+ AG I
Sbjct: 129 EGVGAEQNTWPATDNDEYAYVPESKRDAARISPAAGYTFTARAASINASTLALLSAGTIS 188
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPME 192
+ L VA+ G +LDP EE++ K F + +I EG+S+ E
Sbjct: 189 ILALPVAVALVVTTEGSMMLDPEADEEKQAKARFGFGWAWGAIFGTASEGNSMEVAGQSE 248
Query: 193 HG--IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
G ++ + G + ++ LE + A+ + +F+R L + L
Sbjct: 249 GGAELVWVESEGNFTRQEWSEALEMSKTATKAILEFIRIQLDAHL 293
>gi|189208598|ref|XP_001940632.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976725|gb|EDU43351.1| exosome complex exonuclease RRP41 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 250
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 75/147 (51%), Gaps = 11/147 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-----PEK 59
R DGR N+LR + S A GS+ QG+TK+L +V GP G + + K
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAK 73
Query: 60 ASIEVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+E+ + + R + K E E ++ + + +L + P++T ++ I +V DG
Sbjct: 74 VEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSTITLNIHIVSQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVA 140
+LL INA+ AL+DAGIPM VA
Sbjct: 134 SLLAACINASTLALIDAGIPMTDYLVA 160
>gi|407038338|gb|EKE39071.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 238
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 79/168 (47%), Gaps = 19/168 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R + L A GSA G+T V A V+GP G ++N E A + V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLSTADGSARVRMGNTIVEAVVFGPLEGRRRNR--EGAELMV 67
Query: 65 IWKPRTGQIGKPEK--------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ T K + E +LK+ + I I + P T + +QV+ DDG++
Sbjct: 68 SYSQATFATRKRREQMHDRTMIETAELLKQMYEQIIITKLLPETMIDLRVQVMQDDGSVT 127
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INA AL+DAGIPM + +AE GY ++D K EE
Sbjct: 128 AAVINACTLALIDAGIPMIDI-----VSAAEGGYIDGKMVVDMNKDEE 170
>gi|440636348|gb|ELR06267.1| hypothetical protein GMDG_02061 [Geomyces destructans 20631-21]
Length = 245
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 15/163 (9%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
LH GSA++SQ ++ AV GP +++E PE+A+I+VI +P G E+ E I
Sbjct: 14 LHSTDGSATFSQNGYTIIGAVNGPIEVQRRDELPEEAAIDVIVRPAAGVGSTRERHLESI 73
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVH---DDGA------------LLPCAINAACAALV 128
++RTL+ + +++ P T V +QV D+ A +LP + A AL+
Sbjct: 74 IERTLRQMVLISNFPRTLIQVTLQVTSIPPDETATSKSIQTSSTLPILPALLQTAILALL 133
Query: 129 DAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
A IP+ A +E G + +P+ LE Q + L F
Sbjct: 134 SAAIPLSTSLTATFLAISEKGKILQNPSLLETQTAQSIHVLAF 176
>gi|374633082|ref|ZP_09705449.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
gi|373524566|gb|EHP69443.1| archaeal exosome-like complex exonuclease 1 [Metallosphaera
yellowstonensis MK1]
Length = 245
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 87/165 (52%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A GS+ G+TK++AAVYGP+ ++ P +A +
Sbjct: 16 RLDGRRPDELRPMKIEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S ++ P ++ + ++V+ D
Sbjct: 76 VRYHMTPFSTDERKSPAPSRREIELSKVIREALESSILVEQFPRSSIDIFMEVIQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA A+VDAGIP++ + A+ A+ G +LD + E+
Sbjct: 136 RLASLMAASLAVVDAGIPVRDIIAAVAVGKAD-GVIVLDLNEPED 179
>gi|330835838|ref|YP_004410566.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
gi|329567977|gb|AEB96082.1| exosome complex exonuclease Rrp41 [Metallosphaera cuprina Ar-4]
Length = 245
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P++LRP+ +L A GS+ G+TK++AAVYGP+ ++ P +A++
Sbjct: 16 RLDGRRPDELRPMKMEIGVLKNADGSSLVEVGNTKIIAAVYGPREMHPRHLALPNRATLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+S ++ P ++ V ++V+ D
Sbjct: 76 VRYHMTPFSTDERKSPVPSRREIELSKVIREALESSVLVEQFPRSSIDVFMEVIQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA A++DAGIP++ A+A G +LD
Sbjct: 136 RLASLMAASLAIIDAGIPVRD-AIAAVAVGKADGVVVLD 173
>gi|294495471|ref|YP_003541964.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
gi|292666470|gb|ADE36319.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanohalophilus
mahii DSM 5219]
Length = 297
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 77/172 (44%), Gaps = 24/172 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-----GTKKNE---- 55
R DGR +++RP+ +L RA GS G+ KVLAAVYGP+ K NE
Sbjct: 15 RLDGRRVDEIRPMKVEMGVLSRADGSCYLEWGNNKVLAAVYGPRELHPRRMQKPNEVLVR 74
Query: 56 ---NPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N S+E +P R+ +I K E + + + P V +V
Sbjct: 75 YKYNMASFSVEDRIRPGPSRRSTEISKVSGE-------AFEPVVMTQYYPGAVIDVFAEV 127
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+ D AINAA AL DAGIPMK L V+ C G +LD K E+
Sbjct: 128 LQADAGTRTAAINAATLALADAGIPMKGL-VSACAVGKVDGQLVLDLNKPED 178
>gi|52549121|gb|AAU82970.1| ribonuclease PH [uncultured archaeon GZfos24D9]
Length = 242
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 12/160 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R GR +LRP+ +L RA GS + G+ K LAAVYGP+ ++ +N ++A ++
Sbjct: 14 RLSGRGFEELRPIKIEVGLLKRADGSCYFELGNNKALAAVYGPREMHPRHFQNAKRAVVK 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ + R G + +E ++ ++ L + + + P T V ++V+ D
Sbjct: 74 YRYNMAPFSVDDRKRPGP-DRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
INAA AL DAGIPM+ L ++ + G +LD
Sbjct: 133 TRTAGINAASVALADAGIPMRDLVSSVAIGKID-GEVVLD 171
>gi|337283874|ref|YP_004623348.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
gi|334899808|gb|AEH24076.1| exosome complex exonuclease Rrp41 [Pyrococcus yayanosii CH1]
Length = 249
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ +L + P T + I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALLLELFPRTAIDIFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPMK L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMKDL-VAACAAGKIEGQIVLDLNKEED 180
>gi|315427141|dbj|BAJ48756.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|315427160|dbj|BAJ48774.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
gi|343485775|dbj|BAJ51429.1| exosome complex component RRP41 [Candidatus Caldiarchaeum
subterraneum]
Length = 246
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P+++R + +L + GSA G T++ A V GP+ K+ E P+K I
Sbjct: 16 RVDGRRPDEMRKMRMEVGVLEKTDGSAYVELGGTRIYAGVIGPREVHPKHLELPDKGVIN 75
Query: 64 VIW----------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ KP +G +E E+ +++ L+++ L P + ++V+
Sbjct: 76 CRYHMASFSVDERKP----LGMTRREIELSKVIREALETVVFLEEFPRMMIDIFVEVIQA 131
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
DG I AA AL DAGIPM + AI + G +LD + E++
Sbjct: 132 DGGTRTAGITAASLALADAGIPMADMIAAIAVGKVD-GVLVLDINEQEDK 180
>gi|169595492|ref|XP_001791170.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
gi|111070860|gb|EAT91980.1| hypothetical protein SNOG_00485 [Phaeosphaeria nodorum SN15]
Length = 251
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK-----NENPEK 59
R DGR N+LR + S A GS+ G+TK+L +V GP G + N K
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGKQAGQRGGNGGQAK 73
Query: 60 ASIEVIWKPRTGQ-------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+E+ + +G K KE E ++ + + +L + P++T ++ I ++ D
Sbjct: 74 VEVEINFAGFSGMERRRRGGGDKRSKEMEHCVRSAFEGVLLLHLYPHSTITLNIHIISQD 133
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVA 140
G+LL INA+ AL+DAGIPM VA
Sbjct: 134 GSLLAACINASTLALIDAGIPMTDYLVA 161
>gi|341881249|gb|EGT37184.1| hypothetical protein CAEBREN_28802 [Caenorhabditis brenneri]
gi|341892052|gb|EGT47987.1| hypothetical protein CAEBREN_23050 [Caenorhabditis brenneri]
Length = 240
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 16/171 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P Q+R + + A GS+ G+TKVL AVYGP G ++ +I
Sbjct: 10 RLDGRRPAQIRNVNTRLGLNRNAEGSSYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVC 69
Query: 63 ----------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
E +PR + E +L++ +S+ + P + + +V+ D
Sbjct: 70 QYSTTTFSGLERKNRPRGD---RKSTEMSRLLEKAFESVILTESFPRSQIDIFCEVIQGD 126
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G+ L +NA AL DAGIPMK +A A C E G I+D T EE +
Sbjct: 127 GSNLAACVNATSLALADAGIPMKGIASAATCGIVE-GNPIVDLTSREETDL 176
>gi|410721458|ref|ZP_11360793.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
gi|410598915|gb|EKQ53478.1| archaeal exosome-like complex exonuclease 1 [Methanobacterium sp.
Maddingley MBC34]
Length = 249
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR ++LRPL +L RA GS+ GD KVLAAVYGP+ ++ P A +
Sbjct: 26 RPDGRAFDELRPLKIEAGVLERADGSSYVEIGDNKVLAAVYGPRELHVRRLLKPNMAILR 85
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L L P +T + I+V+ +G
Sbjct: 86 CRYNMAPFSVDDRKRPGPDRRSVEISKITTEALNPAVFLEKFPRSTIDIFIEVLQAEGGT 145
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPM+ + V+ C G I+D ++ E+++
Sbjct: 146 RCAGITAASVALADAGIPMRDM-VSACAAGKADGQVIMDLSEGEDKE 191
>gi|260941676|ref|XP_002615004.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
gi|238851427|gb|EEQ40891.1| hypothetical protein CLUG_05019 [Clavispora lusitaniae ATCC 42720]
Length = 244
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR C + + A GS+ QG+TKV+ V+GPK + +++ N +A+I
Sbjct: 13 RVDGRRWNELRRFECKINTHANSADGSSYIEQGNTKVMCMVHGPKEPSLRSQSNQNRATI 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
E+ + + + + K E + L+RT + + + P T V +QV+ DG
Sbjct: 73 EINLNVASFSTLERKKRNRTEKRMVELKTTLERTFEQSILAHLYPRTLIEVHVQVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
+L NA ALVDAGI M A+ + +LD LEE M
Sbjct: 133 GMLASITNAITLALVDAGIAMYDYVSAVNVALHDQ-TPLLDLNTLEENDM 181
>gi|344305201|gb|EGW35433.1| hypothetical protein SPAPADRAFT_58653 [Spathaspora passalidarum
NRRL Y-27907]
Length = 242
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + H A GS+ QG+TK++ V GP + K N +++
Sbjct: 10 RIDGRRWNELRRFECKINTHPHSADGSSYVEQGNTKIICMVRGPMEPAMKSQVNATSSTV 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + K E + L+RT + + P T SV +QV+ DG
Sbjct: 70 EVNVSLANFSTFERKKRSKTDKRITELKTTLERTFNECIMGHLYPRTLISVTVQVLAQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
LL NA AL+DAGI M + + +LD LEE M
Sbjct: 130 GLLAAMTNAVTLALIDAGIAMYDYVSGVNAGLYDQTSALLDLNTLEENDM 179
>gi|352682028|ref|YP_004892552.1| exosome complex exonuclease 1 [Thermoproteus tenax Kra 1]
gi|350274827|emb|CCC81473.1| exosome complex exonuclease 1 (RNase PH) [Thermoproteus tenax Kra
1]
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 10/149 (6%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEK 59
+E RADGR P+Q+R + + ++ A GSA S G+T +AAVYGP+ ++ + P+K
Sbjct: 10 VEGKRADGRAPDQMREVNIAVGVISNADGSAMVSYGNTVAVAAVYGPREMHPRHLSLPDK 69
Query: 60 ASIEVIW-------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
A + V + K +E EI +L+ L+ L P + V I+++
Sbjct: 70 AVMRVRYHMAPFSTKDERKNPAPSRREIEISKVLREALEPAIFLEQFPRSRIDVFIEILQ 129
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAV 139
DG+ ++ AA AL DAGIPM+ L +
Sbjct: 130 ADGSTRVASLTAASLALADAGIPMRDLVI 158
>gi|213409001|ref|XP_002175271.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
gi|212003318|gb|EEB08978.1| exosome complex exonuclease RRP46 [Schizosaccharomyces japonicus
yFS275]
Length = 214
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL ++ GS+ W Q DT+VL +V GP ++E P +A+ E++ P +G G E+
Sbjct: 6 ILSQSDGSSDWKQRDTRVLCSVNGPIEVKPRSEIPNRATFELLVSPISGVSGTKERFLAS 65
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVH-DDGALLPCAINAACAALVDAGIPMKHLAVAI 141
+ L+ + T P T V +Q+V D+ LL AINA A +DAGI MK++ AI
Sbjct: 66 RILSVLEDAVLSTNYPRTLIQVNVQIVEGDENDLLAAAINATVLAFLDAGIAMKYMPCAI 125
Query: 142 CC 143
C
Sbjct: 126 SC 127
>gi|348504192|ref|XP_003439646.1| PREDICTED: exosome complex component MTR3-like [Oreochromis
niloticus]
Length = 274
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA-- 60
RADGR +Q+ RP+ C ++ +A GSA G+TK++ VYGP+ +K+E K
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYLEAGNTKLMCCVYGPRETDRKDETDMKCGR 93
Query: 61 -SIEVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ ++ + P R I G +K++ ++L +LQ L P + V + V+ + G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKDFSLMLHESLQPAICLHKYPRSQIEVSVMVLENSG 153
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++L A+ A AL DAGI M L + C + ++DP+ +EE
Sbjct: 154 SVLAHAVTCASLALADAGIEMYDLVLG-CSMRQDGTSYVVDPSYMEE 199
>gi|225715750|gb|ACO13721.1| Exosome complex exonuclease MTR3 [Esox lucius]
Length = 277
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 85/167 (50%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS- 61
R DGR Q+ R + C ++ +A GSA G+TK++ VYGP+ +K+E K+
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPREMERKDETDMKSGR 95
Query: 62 --IEVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ + P R I G EK+ ++L +L+ L P + V + V+ +DG
Sbjct: 96 LMTDMRFAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLHKYPRSQIEVNVMVLENDG 155
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++L A+ A AL DAGI M L + C ES ++DPT LEE
Sbjct: 156 SVLAHAVTCASMALADAGIEMYDLVLG-CSIRQESATYLIDPTYLEE 201
>gi|410925956|ref|XP_003976445.1| PREDICTED: exosome complex component MTR3-like [Takifugu rubripes]
Length = 268
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA-- 60
RADGR +Q+ RP+ C ++ +A GSA G+TK++ VYGP+ +K+E K
Sbjct: 34 RADGRRRDQVDVRPVFVRCGLVSQAKGSAYIEAGNTKLMCCVYGPRETERKDETDMKCGR 93
Query: 61 -SIEVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ ++ + P R I G EK++ +L+ +LQ L P + V + V+ + G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQEKDFSTMLQESLQPAVCLHKYPRSQIEVNMMVLENSG 153
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++L AI A AL DAGI M L + C + DPT EE
Sbjct: 154 SVLAHAITCASLALADAGIEMYDLVLG-CSLRQNGASYVADPTSAEE 199
>gi|435852006|ref|YP_007313592.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
gi|433662636|gb|AGB50062.1| archaeal exosome-like complex exonuclease 1 [Methanomethylovorans
hollandica DSM 15978]
Length = 327
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR +++RP+ +L RA GS G K+LAAVYGP+ ++ + P++A +
Sbjct: 15 RLDGRAVDEMRPMTIEIGVLSRADGSCYLEWGKNKILAAVYGPRELHPRRMQKPDEAIVR 74
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + I + P+ V +V+ D
Sbjct: 75 YRYNMAAFSVEDRARPGPSRRSIEISKVSRDAFAPIIMTKYYPSAVIDVFAEVLQADAGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINAA AL DAGIPMK L ++ C G +LD +K E+
Sbjct: 135 RTAAINAASIALADAGIPMKGL-ISACAVGKVDGQLVLDLSKDED 178
>gi|348501208|ref|XP_003438162.1| PREDICTED: exosome complex component RRP41-like [Oreochromis
niloticus]
Length = 245
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR L + +A GSA QG+TK LA VYGP G++ ++A I
Sbjct: 13 RLDGRKATELRKLQARMGVFTQADGSAYLEQGNTKALAVVYGPHEMRGSRSRTLHDRAVI 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVMTQLYPRSQIDIYVKILQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
+NAA A++DAGIPM+ +C C+
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDY---VCACT 161
>gi|213513832|ref|NP_001134673.1| Exosome complex exonuclease MTR3 [Salmo salar]
gi|209735138|gb|ACI68438.1| Exosome complex exonuclease MTR3 [Salmo salar]
Length = 277
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS- 61
R DGR Q+ R + C ++ +A GSA G+TK++ VYGP+ +K+E K+
Sbjct: 36 RVDGRQRGQVDVRSVFVRCGLISQAKGSAYIEAGNTKLICCVYGPRETERKDETDMKSGR 95
Query: 62 --IEVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ + P R I G EK+ ++L +L+ L P + V + V+ +DG
Sbjct: 96 LITDMRFAPFSCRERGSWIQGSDEKDLSLMLLESLRPGVCLQKYPRSQIEVNVMVLENDG 155
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+L A+ A AL DAGI M L + C E ++DPT LEE
Sbjct: 156 AVLAHAVTCASMALADAGIEMYDLVLG-CSIRQEGATYLIDPTFLEE 201
>gi|148228965|ref|NP_001088679.1| exosome component 4 [Xenopus laevis]
gi|56270437|gb|AAH87307.1| LOC495942 protein [Xenopus laevis]
Length = 249
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ ++ I
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRCVI 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + LK+T ++ + + P + + +Q++ DG
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C CSA
Sbjct: 133 GNYCTCVNAATLAVIDAGIPMRDY---VCACSA 162
>gi|145344813|ref|XP_001416919.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577145|gb|ABO95212.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 260
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/242 (26%), Positives = 104/242 (42%), Gaps = 17/242 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ LR + AHGSA ++ T V+A V+GP+ E E+ +E
Sbjct: 8 RGDGRSSEMLRRQRLHRHYVAGAHGSAEYAIDGTIVVATVHGPQKVKPWREEVERGIVEF 67
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAAC 124
+G + E+ E ++ +++ + P ++V DDG +NA C
Sbjct: 68 ELTSASGMTREEERACEARVRGAIEATVVRYDFPRLGLRATARIVSDDGNAEAACVNALC 127
Query: 125 AALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
AL+DA + M L A C G ++DPTK EE + A V LS E
Sbjct: 128 CALIDADVAMHGLICANACAILSDGTKVIDPTKREENE----ARAVVRACALSKYREKEE 183
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS-----LQSKLPGDL 239
+ I+ T GA++ ++Y + A+A + +F ++S L+ K D
Sbjct: 184 I--------AIVGCSTTGALTEEEYLESIAFIVDATASVVNFQKKSIARFELEGKFQEDG 235
Query: 240 SK 241
+K
Sbjct: 236 TK 237
>gi|356542629|ref|XP_003539769.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 8/170 (4%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE--- 58
++ R DGR+ +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 29 DLARPDGRSFHQCRPAFFRTGAVNAASGSAYAEVGNTKVIVSVFGPRESKKAMMYSDIGR 88
Query: 59 ---KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
S P GQ G KEY +L + L+ IL P TT V V+ G+
Sbjct: 89 LNCNVSFTTFATPIRGQ-GSDHKEYSSMLHKALEGAIILETFPKTTVDVFALVLESSGSD 147
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
LP I+ A AL DAGI M L VA S + ++DP EE G
Sbjct: 148 LPVVISCASLALADAGIMMYDL-VASVSVSCFNKNLVIDPVLEEENGQDG 196
>gi|52548652|gb|AAU82501.1| ribonuclease PH [uncultured archaeon GZfos18B6]
Length = 242
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R GR +LRP+ +L RA GS + G+ K +AAVYGP+ ++ +N + A ++
Sbjct: 14 RLSGRGFEELRPIKIDVGVLKRADGSCYFELGNNKAIAAVYGPREMHPRHFQNAKMAVVK 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ + R G + +E ++ ++ L + + + P T V ++V+ D
Sbjct: 74 YRYNMAPFSVDDRKRPGP-DRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
INAA AL DAGIPMK L ++ + G +LD
Sbjct: 133 TRTAGINAASVALADAGIPMKDLVSSVAIGKID-GEVVLD 171
>gi|340377098|ref|XP_003387067.1| PREDICTED: exosome complex component RRP41-like [Amphimedon
queenslandica]
Length = 243
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 16/147 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R+DGR P +LR L+C+ S +A GSA QG+T+V+A VYGP + +KA I
Sbjct: 19 RSDGRRPQELRVLSCNISHCLQADGSAYLQQGNTRVIATVYGP-----HDAQHDKAFINC 73
Query: 65 IWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T + +K E + LK+T ++ + P++ + +Q++ DG+
Sbjct: 74 QFSMATFSTSERKKRPTGDKSCLETSLALKKTFEAAILTDTYPHSKIDIFVQILQSDGSN 133
Query: 116 LPCA--INAACAALVDAGIPMKHLAVA 140
A INA AL+DAGIPMK A
Sbjct: 134 CDKAVSINAITMALIDAGIPMKDYVCA 160
>gi|167393565|ref|XP_001740629.1| exosome complex exonuclease RRP41 [Entamoeba dispar SAW760]
gi|165895202|gb|EDR22949.1| exosome complex exonuclease RRP41, putative [Entamoeba dispar
SAW760]
Length = 238
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 80/168 (47%), Gaps = 19/168 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R + L+ + GSA G+T V A V+GP G ++N E A + V
Sbjct: 10 RLDGRRTTEMRKCEMEINFLNTSDGSARVRMGNTIVEAVVFGPLEGRRRNR--EGAELMV 67
Query: 65 IWKPRTGQIGKPEK--------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ T K + E +LK+ + + I + P T + +Q++ DDG++
Sbjct: 68 SYSQATFATRKRREQMHDRTMIETAELLKQMYEQVIITKLLPETMIDLRVQIMQDDGSVT 127
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
INA AL+DAGIPM + +AE GY ++D K EE
Sbjct: 128 AAVINACTLALIDAGIPMIDI-----VSAAEGGYIDGKMVVDMNKDEE 170
>gi|213514504|ref|NP_001134304.1| Exosome complex exonuclease RRP41 [Salmo salar]
gi|209732228|gb|ACI66983.1| Exosome complex exonuclease RRP41 [Salmo salar]
Length = 245
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ ++A I
Sbjct: 13 RLDGRKAAELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRGSRSKTLHDRAVI 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A+VDAGIPM+ +C C+A
Sbjct: 133 GNYSACVNAATLAVVDAGIPMRDY---VCACTA 162
>gi|257076444|ref|ZP_05570805.1| exosome complex exonuclease Rrp41 [Ferroplasma acidarmanus fer1]
Length = 240
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 104/245 (42%), Gaps = 40/245 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA---- 60
R DGR+ N++RP+ ++ RA GSA G K++ AVY +A K +N ++A
Sbjct: 14 RLDGRSLNEMRPIKIQTGVVERADGSAFIEWGANKIIVAVYVREAYPKHAQNIDRAIVKA 73
Query: 61 -------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
S+E +P RT +I K ++ L S +L P V IQV+
Sbjct: 74 RYNMSGYSVEERKRPGPDRRTMEISK-------VVSEALSSAIVLEKLPRAEIDVFIQVL 126
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL 169
D ++ A+ A+ DAG+PM+ L V C G +LD +K E+ F
Sbjct: 127 EADAGTRIASLTASSVAVADAGVPMRDLVVG-CTAGKADGKIVLDLSKDEDN----FGQA 181
Query: 170 VFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRR 229
P +IL P ++ G ++ +++ A ++S+ R
Sbjct: 182 DIPMAIL-------------PRTGKVVLLQLDGDVTEEEFNEATSMMMDAMPRISELQRN 228
Query: 230 SLQSK 234
+L SK
Sbjct: 229 ALMSK 233
>gi|52550028|gb|AAU83877.1| ribonuclease PH [uncultured archaeon GZfos34H10]
Length = 242
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R GR +LRP+ +L RA GS + G+ KV+A VYGP+ ++ +N + A ++
Sbjct: 14 RLSGRGFEELRPIKIEVGVLKRADGSCYFELGNNKVIAGVYGPREMHPRHFQNAKMAVVK 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ + R G + +E ++ ++ L + + + P T V ++V+ D
Sbjct: 74 YRYNMAPFSVDDRKRPGP-DRRSQEISMVSRKALDPVILRELYPKTAIEVYVEVLQSDAG 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
INAA AL DAGIPM+ L ++ + G +LD
Sbjct: 133 TRTAGINAASVALADAGIPMRDLVSSVAIGKID-GEVVLD 171
>gi|167045225|gb|ABZ09885.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
crenarchaeote HF4000_APKG8O8]
Length = 245
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 31/241 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR N+ R + +L A GSA G K+LA V+GP+ K+ NP+ +
Sbjct: 17 RCDGRKVNETRKVTIKAGVLKNADGSAYIEFGGNKILAGVFGPRDVHPKHLSNPDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + +E EI ++K L+ IL P T V ++V+ DG
Sbjct: 77 VRYHMEPFSVDERKNPAPSRREIEISKVVKEALEPAVILEKFPRTVIDVFLEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPN 173
A++AA AL DAGIPM+ + +C C+A + I+D E+Q + + +
Sbjct: 137 RCAALDAASVALADAGIPMRDM---VCACAAGKVADTLIIDVNNEEDQAGQADMPVGYMP 193
Query: 174 SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQS 233
++ V +L+Q G ++ +++ C+E G S ++ + +++L+
Sbjct: 194 NLGKV-----TLLQ------------LDGVLTPEEFKKCVELGIEGSKQVYEIQKQALRE 236
Query: 234 K 234
K
Sbjct: 237 K 237
>gi|225709136|gb|ACO10414.1| Exosome complex exonuclease RRP41 [Caligus rogercresseyi]
Length = 246
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 109/245 (44%), Gaps = 34/245 (13%)
Query: 5 RADGRNPNQLRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPK----AGTKKNENPEK 59
R DGR ++LR L C A GSA G+TKVLAAVYGP+ + N N E+
Sbjct: 10 RLDGRKSDELRRLRCRLGAFSWSADGSAYLEMGNTKVLAAVYGPREPRGGSSGDNSNKEE 69
Query: 60 ASIEVIW--------KPRTGQIG-KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
A + V + + + Q G K E LK+T + + P + + ++V+
Sbjct: 70 AILNVQFSSAAFSTAERKQRQRGDKRSLEMAAHLKQTFAACIQTELYPRSQIDIFVEVLQ 129
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAY 168
DG ++NAA AL+ AGIP++ +C CSA +LD + LE
Sbjct: 130 TDGGHYCASVNAATLALIHAGIPLRDY---VCACSASLIKETPLLDISMLESN------- 179
Query: 169 LVFPNSILSVLPEGSSLV-----QGEPMEH--GIITSVTHGAMSVDDYFHCLERGRAAS- 220
L P IL+ LP+ +V Q M+H +I G + D + R +
Sbjct: 180 LGGPELILAALPKSGEIVLLEMSQRFHMDHLEKVIDEALEGTRKIRDILDEVVRDHLSKH 239
Query: 221 AKLSD 225
AK++D
Sbjct: 240 AKVND 244
>gi|328712784|ref|XP_001945013.2| PREDICTED: exosome complex exonuclease RRP41-like [Acyrthosiphon
pisum]
Length = 249
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI- 62
R DGR +LR + C + ++ GSA QG+TKV+AA+YGP + T + + P +++
Sbjct: 10 RTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAVI 69
Query: 63 ------------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
E +PR + E + LK+ + + + P + + +QV+
Sbjct: 70 NCQYSMATFSRSERKRRPRDNK----SAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQ 125
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
DG +NAA AL+DAGI M+ ++ A ++D + LEE M G
Sbjct: 126 SDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEE-TMGG----- 179
Query: 171 FPNSILSVLP 180
P+ +++LP
Sbjct: 180 -PSLTVAILP 188
>gi|308473330|ref|XP_003098890.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
gi|308268029|gb|EFP11982.1| hypothetical protein CRE_31358 [Caenorhabditis remanei]
Length = 214
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP G N E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDGHASKANEEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I++ T+ L + P+TT +V I + DDG++ AIN AC AL+D
Sbjct: 63 ----DNKFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + + + I+DPT +E G
Sbjct: 119 NGMPFEAVFCGVLVVRLKDEL-IIDPTTKQEASSTG 153
>gi|403163440|ref|XP_003323509.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164298|gb|EFP79090.2| hypothetical protein PGTG_05411 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 312
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M + R+D R +R L SIL R+ GSA +S GD K L AV GP ++E P +A
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV----------H 110
++VI P G G P K +K + +L P + + +Q +
Sbjct: 61 FVDVIVVPVCGLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLSKPSDRWTNGF 120
Query: 111 DDGALLPCA-----------------INAACAALVDAGIPMKHLAVAICCC--------- 144
G L P A INAA AL+DAG+ M+ A A+
Sbjct: 121 TTGTLEPTATVPLFEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGLAILPPSAVSP 180
Query: 145 ------SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 198
+ ES +LDP+ EE K + F G + +E G +
Sbjct: 181 NHNNPQALESDLIVLDPSPTEESSAKSLHLVGFH------FGHGFNTTTDSGVEIGTVAL 234
Query: 199 V-THGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
++G+ S D L+ A+ ++ F+R+S
Sbjct: 235 CESNGSFSYDQLQTVLKLASLATQQILAFVRQS 267
>gi|195388798|ref|XP_002053065.1| GJ23674 [Drosophila virilis]
gi|194151151|gb|EDW66585.1| GJ23674 [Drosophila virilis]
Length = 240
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 27/225 (12%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T V+AAV GP +N + E + +E ++P+ G
Sbjct: 12 DKLREMHCKFNALSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
E+ E ++ L+ + P SV +Q + D G++ CA+NAAC A++ G
Sbjct: 72 LPQVKERIREAAIRDVLELALLSEAYPRAKMSVQVQELEDRGSIDACALNAACLAMLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDPTK---LEEQKMKGFAYLVFPNSILSVLPEGSSLVQG 188
+P+K+ A+ C E G +LDP + L +Q FA+ ++L LVQ
Sbjct: 132 LPLKYSFAAVHCIINEQGEFVLDPDQNETLHQQASFTFAFDSVDGNLL--------LVQ- 182
Query: 189 EPMEHGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 231
T GA + + C+ RAASA++ +F RR++
Sbjct: 183 -----------TKGAFKIAQFNDIECI--CRAASAEIFEFYRRNI 214
>gi|330917879|ref|XP_003297997.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
gi|311329045|gb|EFQ93909.1| hypothetical protein PTT_08574 [Pyrenophora teres f. teres 0-1]
Length = 250
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 11/147 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-----PEK 59
R DGR N+LR + S A GS+ QG+TK+L +V GP G + + K
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEQGNTKILVSVTGPHEGRQSGQRGGADKQAK 73
Query: 60 ASIEVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+E+ + + R + K E E ++ + + +L + P++ ++ I +V DG
Sbjct: 74 VEVEINFAGFSGVERRKRKSDKRTSEMEHCIRSAFEGVLLLHLYPHSIITLNIHIVSQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVA 140
+LL INA+ AL+DAGIPM VA
Sbjct: 134 SLLAACINASTLALIDAGIPMTDYLVA 160
>gi|331237979|ref|XP_003331645.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310635|gb|EFP87226.1| hypothetical protein PGTG_12810 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 109/273 (39%), Gaps = 49/273 (17%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M + R+D R +R L SIL R+ GSA +S GD K L AV GP ++E P +A
Sbjct: 1 MSIMRSDSRTEADIRSLTMRMSILSRSDGSAQFSFGDLKALGAVTGPAEVRIRDEKPTEA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV----------H 110
++VI P G G P K +K + +L P + + +Q +
Sbjct: 61 FVDVIVVPVCGLPGPPTKSLAHSIKSFFTPLILLKKYPRSLIQINLQTLSKPSDRWTNGF 120
Query: 111 DDGALLPCA-----------------INAACAALVDAGIPMKHLAVAICCC--------- 144
G L P A INAA AL+DAG+ M+ A A+
Sbjct: 121 TTGTLEPSATVPLFEETQSVSEKAALINAASLALLDAGVGMRGCAFAVGLAILPPSAVSP 180
Query: 145 ------SAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 198
+ ES +LDP+ EE K + F G + +E G +
Sbjct: 181 NHNNPQALESDLIVLDPSPTEESSAKSLHLVGFH------FGHGFNTTTDSGVEIGTVAL 234
Query: 199 V-THGAMSVDDYFHCLERGRAASAKLSDFLRRS 230
++G+ S D L+ A+ ++ F+R+S
Sbjct: 235 CESNGSFSYDQLQTVLKLASLATQQILAFVRQS 267
>gi|239788290|dbj|BAH70834.1| ACYPI001085 [Acyrthosiphon pisum]
Length = 213
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 25/190 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI- 62
R DGR +LR + C + ++ GSA QG+TKV+AA+YGP + T + + P +++
Sbjct: 10 RTDGRRSGELRRIRCKMGVFNQPDGSAYLEQGNTKVVAAIYGPHEIRTNRAKAPNDSAVI 69
Query: 63 ------------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
E +PR + E + LK+ + + + P + + +QV+
Sbjct: 70 NCQYSMATFSRSERKRRPRDNK----SAELTLHLKQAMATAIKTDLYPKSQIDIFVQVLQ 125
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
DG +NAA AL+DAGI M+ ++ A ++D + LEE M G
Sbjct: 126 SDGGNYSVCVNAATLALIDAGIAMEEFVISCTSSLANGETPLVDISHLEE-TMGG----- 179
Query: 171 FPNSILSVLP 180
P+ +++LP
Sbjct: 180 -PSLTVAILP 188
>gi|402590947|gb|EJW84877.1| hypothetical protein WUBG_04212 [Wuchereria bancrofti]
Length = 250
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P+Q+R L + +A GSA QG+TKVL AVYGP +++ E I
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 63 -----------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
E +PR + E+ ++++ ++ + P + V +++
Sbjct: 70 CQYSMATFSTNERKERPRG---DRRSLEFARLMEKAFEAAILTENYPRSQIDVFCELLQA 126
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DG+ L +N AL DAG+PM+ L A C A G +D EE
Sbjct: 127 DGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVNSREE 175
>gi|45185722|ref|NP_983438.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|44981477|gb|AAS51262.1| ACR035Wp [Ashbya gossypii ATCC 10895]
gi|374106644|gb|AEY95553.1| FACR035Wp [Ashbya gossypii FDAG1]
Length = 246
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 19/178 (10%)
Query: 5 RADGRNPNQLRPLACSCSILH--RAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKAS 61
R DGR N+LR CS + H A GS+ QG+ K++ V GP + + NP KA+
Sbjct: 13 RLDGRRWNELRRFECSINT-HPTAADGSSYLEQGNNKLITLVTGPHEPALRSQVNPSKAT 71
Query: 62 IEVIW---------KPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVV 109
+ V + +TG K E+ E + L RT + +L + P T V + V+
Sbjct: 72 LTVTVNMTKFAAAERSKTGH--KNERRILEMQTALVRTFEKNVMLQLYPRTAIDVQVHVL 129
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFA 167
+DG +L IN AL+DAGI M I ++ +LD +LEEQ M F
Sbjct: 130 QNDGGVLGSMINGITLALIDAGIAMYEYISGISVGLYDT-TPLLDLNRLEEQAMSCFT 186
>gi|167537032|ref|XP_001750186.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771348|gb|EDQ85016.1| predicted protein [Monosiga brevicollis MX1]
Length = 1336
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE----------KAS 61
++LR + + +A GSA QG+TKVLA + GP + N AS
Sbjct: 38 DELRSVKAKLGVFEQADGSAYVEQGNTKVLAIINGPHDSDARGPNASGHLTVSCEFIYAS 97
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
+ ++ + E + RTL+S+ + + +T ++ +QV+ DG +L AIN
Sbjct: 98 FSTDQRRARSRLDRKLAEQGTRIARTLESVVMGQLLSRSTINLNVQVLQADGGVLATAIN 157
Query: 122 AACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVL 179
AA A++DAG+PMK +C C+A G +LD T E +G P+ ++V+
Sbjct: 158 AASLAMMDAGVPMKDF---LCACNAGVLEGVAVLD-TNHSEALARG------PDLTVAVM 207
Query: 180 PEGSSLV 186
P +++V
Sbjct: 208 PRTNTIV 214
>gi|388851424|emb|CCF54826.1| probable exosome complex exonuclease rrp41 [Ustilago hordei]
Length = 269
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKAS 61
R DGR +LR +A S A GSA +QG T V A V+GP+ A T N ++AS
Sbjct: 13 RVDGRKQFELRSIAIQLGGSPDTSADGSAQITQGLTTVSATVFGPREARTGANMIHDRAS 72
Query: 62 I--EVIWKPRTGQIGKPEK-----------EYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ EV P G E+ E+ +K T + + + P + + +QV
Sbjct: 73 VNVEVCLAPW----GSTERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
DG +LP AINAA AL+DAGI M+ VA C S +LD + EE +
Sbjct: 129 HQQDGGVLPAAINAATLALLDAGIAMQDF-VASVSCGIHSTSAMLDLSNAEEMDLPHVTV 187
Query: 169 LVFPNS 174
V P +
Sbjct: 188 AVLPRT 193
>gi|432862333|ref|XP_004069803.1| PREDICTED: exosome complex component MTR3-like [Oryzias latipes]
Length = 272
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA-- 60
RADGR +Q+ RP+ C ++ +A GSA GDTK+L +VYGP+ +K+E K
Sbjct: 34 RADGRQRDQVDVRPVFVRCGLVSQAKGSAYIEAGDTKLLCSVYGPRETERKDETDMKCGR 93
Query: 61 -SIEVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ ++ + P R I G +K + ++L+ +LQ L P + V + V+ + G
Sbjct: 94 LTTDMRFAPFSCPERGSWIQGSQDKNFSLMLQESLQPALCLHKYPRSQIEVNVMVLENSG 153
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156
++ AI A AL DAGI M L + C + ++DPT
Sbjct: 154 SVQAHAITCASLALADAGIEMYDLVLG-CSIRQDGSSYVVDPT 195
>gi|451856157|gb|EMD69448.1| hypothetical protein COCSADRAFT_32167 [Cochliobolus sativus ND90Pr]
Length = 252
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 13/149 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK-------NENP 57
R DGR N+LR + S A GS+ G+TKVL +V GP A K+ ++
Sbjct: 14 RLDGRRWNELRHIHAQISTQAAADGSSYLEMGNTKVLVSVSGPAAEGKQTGQRGTTSDKL 73
Query: 58 EKASIEVIWKPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
K +E+ + +G + K E E L+ + + L + P +T ++ + +V
Sbjct: 74 AKIDVEINFAGFSGVDRRKRKTDKKTSEMEHCLRSAFEGVVSLHLYPRSTITINVHIVSQ 133
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVA 140
DG+LL +NAA ALVDAGIPM VA
Sbjct: 134 DGSLLAACLNAATLALVDAGIPMTDYLVA 162
>gi|156550959|ref|XP_001603897.1| PREDICTED: exosome complex component RRP41-like [Nasonia
vitripennis]
Length = 270
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 31/184 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
RADGR P +LR + + +A GSA QG TK+LA VYGP + K N N KA
Sbjct: 13 RADGRRPLELRRIRLRMGVFGQADGSAYLEQGKTKILATVYGPHQPRGKANANALKAVKG 72
Query: 64 VI-----------------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII 106
++ KPR + +E L+ +++I L + + + +
Sbjct: 73 IVNCQYSTAVFSFGAGERKKKPRG---DRKSQERSQQLRHAMEAIINLELFARSQIDIFV 129
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES----------GYCILDPT 156
+V+ DG+ A+NAA AL+DAGIP+K A+ +++ G ILD
Sbjct: 130 EVLQVDGSDFCVAVNAATLALIDAGIPIKDYAIGCSVTVSDNLLGDDDDSGQGTGILDAN 189
Query: 157 KLEE 160
+EE
Sbjct: 190 WIEE 193
>gi|170586916|ref|XP_001898225.1| Putative exosome complex exonuclease RRP41 [Brugia malayi]
gi|158594620|gb|EDP33204.1| Putative exosome complex exonuclease RRP41, putative [Brugia
malayi]
Length = 249
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 76/169 (44%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P+Q+R L + +A GSA QG+TKVL AVYGP +++ E I
Sbjct: 10 RQDGRKPHQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 63 -----------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
E +PR + E+ ++++ + + P + V +++
Sbjct: 70 CQYSMATFSTNERKERPRG---DRRSLEFARLMEKAFEEAILTENYPRSQIDVFCELLQA 126
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DG+ L +N AL DAG+PM+ L A C A G +D EE
Sbjct: 127 DGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPGGLACVDVNSREE 175
>gi|145520971|ref|XP_001446341.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413818|emb|CAK78944.1| unnamed protein product [Paramecium tetraurelia]
Length = 227
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 4/168 (2%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M + R DGRN Q+R + +I GS + QG T+V+ V GP+A T+ +
Sbjct: 1 MSLKRQDGRNLQQMRNIEFKLAIDLSVDGSCLYKQGLTEVICLVQGPRAKTQSELLLIEY 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEII---LKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
S+ + + K +K+Y + LK + +++ IL N + S+ + V+ +DG+
Sbjct: 61 SVSPFSNIESKRSSKFDKDYSMFAENLKESFENLIILDENGKSEISISVCVIQNDGSSKS 120
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
NA AL+DAG+ MK V++ + G I+D T+ E + +G
Sbjct: 121 AVFNAITLALLDAGVSMKDFLVSV-TVGLDQGNLIVDLTQEESKTAQG 167
>gi|432917028|ref|XP_004079428.1| PREDICTED: exosome complex component RRP41-like [Oryzias latipes]
Length = 244
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 96/206 (46%), Gaps = 29/206 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G + ++A I
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYLEQGNTKALAVVYGPHEIRGARSRALHDRAII 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTQLYPRSQIDIYVKILQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE----QKMKGFAYL 169
+NAA A++DAGIPM+ +C C+ G+ +D T L + ++ G + L
Sbjct: 133 GNYSVCVNAATLAVIDAGIPMRDY---VCACTV--GF--VDETSLADLCYAEESGGVSSL 185
Query: 170 VFPNSILSVLPEGS--SLVQGEPMEH 193
L++LP G +LVQ + H
Sbjct: 186 A-----LALLPRGGQIALVQMDARLH 206
>gi|302672677|ref|XP_003026026.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
gi|300099706|gb|EFI91123.1| hypothetical protein SCHCODRAFT_80065 [Schizophyllum commune H4-8]
Length = 259
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 92/182 (50%), Gaps = 15/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP-EKASI- 62
R+DGR +LR + S A GSA S G T+VL +VYGP+ +++++ ++A+I
Sbjct: 14 RSDGRKQYELRDMTIDLSPRASADGSALVSHGLTQVLVSVYGPREPKQRSQSAHDRATIN 73
Query: 63 -EVIWKPRTG-------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV P + + K +E +++T + + + +I P +T V I ++ DG+
Sbjct: 74 VEVGTAPFSSGERRKRGRGDKRTQELCYTVQQTFEPVVLTSIYPRSTIDVFITILQQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKMKGFAYLVFP 172
L+P INA AL+ AG+P+ +C SA +LD T LEE + V P
Sbjct: 134 LIPACINATTLALICAGVPLLDF---VCAVSAGVHDTESMLDLTTLEENDLPWVNAAVMP 190
Query: 173 NS 174
+
Sbjct: 191 KT 192
>gi|410671927|ref|YP_006924298.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
gi|409171055|gb|AFV24930.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanolobus
psychrophilus R15]
Length = 346
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 75/170 (44%), Gaps = 20/170 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR N++R + +L RA GS G+ K+L AVYGP+ A +
Sbjct: 15 RLDGRQINEMRQMKIKIGVLSRADGSCYLEWGNNKILVAVYGPRELHPRRLQKADSALIR 74
Query: 53 KNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
N S+E +P G + EI + + + + + + P V +V+
Sbjct: 75 YRYNMAAFSVEDRIRP-----GPSRRSIEISKVSREAFEPVIMTHLYPGAVIDVFAEVLQ 129
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
D AINAA AL DAGIPMK L V+ C G +LD K E+
Sbjct: 130 ADAGTRTAAINAASIALADAGIPMKSL-VSACAVGKVDGQLVLDLNKAED 178
>gi|409043264|gb|EKM52747.1| hypothetical protein PHACADRAFT_31210 [Phanerochaete carnosa
HHB-10118-sp]
Length = 266
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKA--S 61
R+DGR +LR + S A GSA + G T+VL +V+GP+ +++ ++A +
Sbjct: 14 RSDGRRQFELRDITMDLSQRGTADGSAMITHGLTQVLVSVFGPREAKMRSQTFHDRAVLN 73
Query: 62 IEVIWKP-RTGQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+EV P TG+ K + E+ +K T + + + P + + + V+ DG
Sbjct: 74 VEVNIAPFSTGERRKRNRGDKRILEFASAIKSTFEPVVQTNLYPRSQIDIYVHVLQQDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LL INA ALV AGIP+ L A+ S +LD T LEE + + P +
Sbjct: 134 LLQAGINATTLALVSAGIPLLDLVCAV-TGGVHSTSPMLDLTTLEENDIPHLTVAIMPKT 192
>gi|357472161|ref|XP_003606365.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
gi|355507420|gb|AES88562.1| Exosome complex exonuclease MTR3 [Medicago truncatula]
Length = 258
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDTGRLNC 92
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ IL P TT V V+ G+ LP
Sbjct: 93 NVSYTTFSTPVRGQ-GSDHKEYSSMLHKALEGAIILDSFPKTTVDVFALVLESSGSDLPV 151
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L +V++ C ++DP EE G
Sbjct: 152 VISVASLALADAGILMYDLVASVSVSCLGKN---LVIDPIFEEENSQDG 197
>gi|307174738|gb|EFN65093.1| Exosome complex exonuclease RRP41 [Camponotus floridanus]
Length = 274
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 109/222 (49%), Gaps = 33/222 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R+DGR +LR + + +A GSA G+TKVLAAVYGP + + + N KA +
Sbjct: 14 RSDGRRALELRQIRLRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPKSNISRNSTKAFVN 73
Query: 64 -----VIWKPRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
++ +G+ + +E L+ +++I L + P + + ++V+ D
Sbjct: 74 CQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDIFVEVLQVD 133
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF- 171
G+ ++NA+ AL+DAGIP+K+ AV C S +++ EE++ K A V
Sbjct: 134 GSDYCASVNASTLALIDAGIPIKNYAVG-CTVS------LINKLTTEEEEDKTLATGVLD 186
Query: 172 --------PNSILSV--LPEGSSLVQGEPMEHGIITSVTHGA 203
P LSV LPE ++ V+ + G+I V HGA
Sbjct: 187 ANFVEECSPGVTLSVVALPETNNEVEVDG--SGLIV-VAHGA 225
>gi|312065760|ref|XP_003135946.1| EXOSome component family member [Loa loa]
gi|307768890|gb|EFO28124.1| EXOSome component family member [Loa loa]
Length = 247
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P Q+R L + +A GSA QG+TKVL AVYGP +++ E I
Sbjct: 10 RQDGRKPYQIRNLNYKLGVYSQADGSAYLEQGNTKVLCAVYGPYEPKQRSRLLEDRCIIN 69
Query: 63 -----------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
E +PR + E+ ++++ ++ + P + V +++
Sbjct: 70 CQYSMATFSTNERKERPRGD---RRSLEFARLMEKAFEAAVLTENYPRSQIDVFCELLQA 126
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DG+ L +N AL DAG+PM+ L A C A +G +D EE
Sbjct: 127 DGSHLAACVNVGTLALADAGVPMRGLVAAASCACAPNGVACVDVNSREE 175
>gi|21228725|ref|NP_634647.1| exosome complex exonuclease 1 [Methanosarcina mazei Go1]
gi|29336795|sp|Q8PTT8.1|ECX1_METMA RecName: Full=Probable exosome complex exonuclease 1
gi|20907234|gb|AAM32319.1| Ribonuclease [Methanosarcina mazei Go1]
Length = 493
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR +++RP+ +L RA GS G K+L V+GP+ A ++++ + A I
Sbjct: 17 RLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIR 76
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + G + EI + + + + + + P T + ++V+ D
Sbjct: 77 YRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINA+ AL DAGIPMK L + C G +LD K E+
Sbjct: 137 RTAAINASSIALADAGIPMKGL-ITSCAFGKVDGKIVLDLNKEED 180
>gi|448099279|ref|XP_004199107.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359380529|emb|CCE82770.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-------- 55
R DGR N+LR C + A GS+ QG+TKV+ V GPK + K++
Sbjct: 13 RVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAVI 72
Query: 56 --NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
N AS + + + K E L+RT + I + P TT SV + V+ DG
Sbjct: 73 EFNVSIASFSTTNRKKRSKNEKRTIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
LL NA+ AL+DAGI M I + +LD LEE M V N
Sbjct: 133 GLLAALTNASTLALIDAGISMYDYISGISAGLHDIS-PLLDLNTLEESGMSFLTIGVVGN 191
Query: 174 S 174
S
Sbjct: 192 S 192
>gi|393221006|gb|EJD06491.1| exosome component 4 [Fomitiporia mediterranea MF3/22]
Length = 284
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAG---TKKNENPEKAS 61
R+DGR ++LR ++ +A GSA SQG T+VL V+GP+ T++ N +
Sbjct: 34 RSDGRRQHELRDFNIDLAVRGQADGSAMVSQGLTQVLVTVFGPREARSPTQRIHNRAFIN 93
Query: 62 IEV-IWKPRTGQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+EV I T + K + E+ +K T + + + P + + +QV+ DG
Sbjct: 94 VEVNIASFSTSERRKRSRNDKRVLEFAAAIKSTFEPVIQTHLYPRSEIDIFVQVLQQDGG 153
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKMKGFAYLVFP 172
LL +INA AL+ GI + +C SA + + +LD LEE + V P
Sbjct: 154 LLSASINATTLALITGGISLYDY---VCAVSAGVHATHPLLDLNTLEENDVPHLTTAVMP 210
Query: 173 NS 174
+
Sbjct: 211 RT 212
>gi|149430580|ref|XP_001515504.1| PREDICTED: exosome complex component RRP41-like [Ornithorhynchus
anatinus]
Length = 245
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G + P++A +
Sbjct: 13 RVDGRRAGELRKIEARMGVFAQADGSAYIEQGNTKALAVVYGPHEMRGLRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E L++T + + + P + + +Q++ DG
Sbjct: 73 NCQFSMATFSTGERKRRPHGDRKATEMSQHLQQTFEDAILTQLYPRSQIDIYVQILQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIP++ +C SA
Sbjct: 133 GNYAACVNAATLAVLDAGIPLRDF---VCASSA 162
>gi|308491849|ref|XP_003108115.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
gi|308248963|gb|EFO92915.1| CRE-TIN-9.2 protein [Caenorhabditis remanei]
Length = 372
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 16/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP G ++ +I
Sbjct: 126 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKASKRLEDRCAIVC 185
Query: 65 IWKPRT----GQIGKPE---KEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T + +P K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 186 QYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSN 245
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM------KGFAYL 169
L +NA AL DAGIPMK +A A C ++ I+D T EE + GF+ +
Sbjct: 246 LAACVNATSLALADAGIPMKGIASAATCGIVDAKP-IVDLTSREETDLLPRVTVSGFSSI 304
Query: 170 VF 171
+
Sbjct: 305 IL 306
>gi|307214803|gb|EFN89690.1| Exosome complex exonuclease RRP41 [Harpegnathos saltator]
Length = 271
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR +LR + + +A GSA G+TKVLAAVYGP + +N KA +
Sbjct: 14 RVDGRRALELRQIRIRMGVFGQADGSAYIEHGNTKVLAAVYGPHQPRNNIAKNTTKAIVN 73
Query: 64 -----VIWKPRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
++ +G+ + +E I L+ +++I L + P + + ++++ D
Sbjct: 74 CQYSMAVFSFTSGERKRRPRGDWKSQERSIQLRHAMEAIIHLELYPRSQIDIFVEILQVD 133
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM-------KG 165
G+ ++NAA AL+DAGIP+K+ AV C A I P+ E+ K
Sbjct: 134 GSDYCASVNAATLALIDAGIPIKNYAVG--CTVA----LINTPSTDEQDKTLAGGVLDAN 187
Query: 166 FAYLVFPNSILSV--LPEGSSLVQGEPMEHGIITSVTHG 202
F P LSV LP G+S V E E+G+I V HG
Sbjct: 188 FVEEYSPGVTLSVVALP-GTSEV--ESNENGLIV-VAHG 222
>gi|448103137|ref|XP_004199958.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
gi|359381380|emb|CCE81839.1| Piso0_002516 [Millerozyma farinosa CBS 7064]
Length = 244
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/181 (33%), Positives = 81/181 (44%), Gaps = 12/181 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASI 62
R DGR N+LR C + A GS+ QG+TKV+ V GPK K +N A +
Sbjct: 13 RVDGRRWNELRRFDCRINTHPQSADGSSYVEQGNTKVICMVSGPKEPSNKSQQNSSGAVV 72
Query: 63 E----VIWKPRTGQIGKPEKEYEII-----LKRTLQSICILTINPNTTTSVIIQVVHDDG 113
E + T + + + E II L+RT + I + P TT SV + V+ DG
Sbjct: 73 EFNVSIASFSTTNRKKRSKNEKRIIELNTTLERTFEQSIIRKLYPRTTISVNLHVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
LL NA+ AL+DAGI M I + +LD LEE M V N
Sbjct: 133 GLLAALTNASTLALIDAGISMYDYISGISAGLHDVS-PLLDLNTLEENGMSFLTIGVVGN 191
Query: 174 S 174
S
Sbjct: 192 S 192
>gi|73669984|ref|YP_305999.1| exosome complex exonuclease 1 [Methanosarcina barkeri str. Fusaro]
gi|72397146|gb|AAZ71419.1| ribosomal RNA-processing protein RRP41/SKI6 [Methanosarcina barkeri
str. Fusaro]
Length = 501
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR+ +++RP+ +L RA GS G KVL V+GP+ A ++++ + A I
Sbjct: 15 RLDGRHADEIRPMKIEIGVLSRADGSCYLEWGRNKVLVGVFGPREAHPRRSQRADTAVIR 74
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + + + + + + P T + ++++ D
Sbjct: 75 YKYNMASFSTEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEILQADAGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINA+ AL DAGIPMK L V C G +LD K E+
Sbjct: 135 RTAAINASSIALADAGIPMKGL-VTSCAFGKVDGQIVLDLNKEED 178
>gi|159474468|ref|XP_001695347.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
gi|158275830|gb|EDP01605.1| 3'-5' exoribonuclease PH component of the exosome [Chlamydomonas
reinhardtii]
Length = 245
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P +LR + C +L A GSA + G+TKVLAAV+GP A T+++E E+
Sbjct: 10 RLDGRRPRELRRINCQLDVLSNADGSAIFEMGNTKVLAAVFGPHAVTRRSELREEGALVV 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
A+ + R G+ + E ++++ TL+ I + P + V +QV+ DG
Sbjct: 70 CEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAVITELLPRSQIDVYVQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINAA AL AG+P++ L VA C G +LD E+
Sbjct: 130 TRCAAINAAVLALAAAGVPLRDL-VAGCAAGYLDGTALLDLNYTED 174
>gi|18313178|ref|NP_559845.1| exosome complex exonuclease Rrp41 [Pyrobaculum aerophilum str. IM2]
gi|29336868|sp|Q8ZVM9.1|ECX1_PYRAE RecName: Full=Probable exosome complex exonuclease 1
gi|18160692|gb|AAL64027.1| 3' exoribonuclease family protein [Pyrobaculum aerophilum str. IM2]
Length = 246
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E IL+ L+ +L P + V ++++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L V + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDQYGEG 183
>gi|125546411|gb|EAY92550.1| hypothetical protein OsI_14290 [Oryza sativa Indica Group]
Length = 260
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 95/236 (40%), Gaps = 29/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
RADGR+ + RP A GSA G TKV+ +V+GP+ K +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 99 NVSYTTFATPMRGQ-GTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 157
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
I+ A AL DAGI M L +V++ C I+DPT EE
Sbjct: 158 IISCASLALADAGIMMYDLVTSVSVSCFGKN---IIIDPTSDEE---------------- 198
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS +V P I G S + +E A +KL D LR L+
Sbjct: 199 -AWQDGSLMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDILREHLK 253
>gi|52352385|gb|AAU43674.1| ribonuclease PH [uncultured archaeon GZfos26D8]
Length = 247
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 15/191 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++LRP+ +L RA GS GD KV+AAVYGP+ ++ K ++ V
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV-V 71
Query: 65 IWKPRTGQI--------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ G + EI + + + + + P T V ++++ D
Sbjct: 72 KFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKTGIEVYVELLQSDAG 131
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVF 171
INAA AL DAGIPMK L +I G +LD E+ + A +
Sbjct: 132 TRTAGINAASIALADAGIPMKDLVSSIAVGKI-GGEMVLDLNAAEDNNGEADMPIAMIAR 190
Query: 172 PNSILSVLPEG 182
N+I ++ +G
Sbjct: 191 TNTITALQMDG 201
>gi|62858329|ref|NP_001016436.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|89273823|emb|CAJ82158.1| exosome component 4 [Xenopus (Silurana) tropicalis]
gi|111598409|gb|AAH80330.1| LOC549190 protein [Xenopus (Silurana) tropicalis]
Length = 249
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ +++ +
Sbjct: 13 RVDGRKAGELRKIRARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSKMLHDRSVV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + LK+T ++ + + P + + +Q++ DG
Sbjct: 73 NCQYSMATFSTGERKRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQIDIYVQILQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C SA
Sbjct: 133 GNYCTCVNAATLAVIDAGIPMRDY---VCASSA 162
>gi|168063069|ref|XP_001783497.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664987|gb|EDQ51687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 246
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 79/160 (49%), Gaps = 11/160 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR P ++R L ++ A GSA + G+T+V+A VYGP + K ++ +KA +
Sbjct: 12 RLDGRRPPEMRHLHAVVGVVPSADGSALFHMGNTQVMAVVYGPHEVHNKAHQLHDKALVR 71
Query: 64 VIWKPRTGQIGKPE---------KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ G+ E +++ +TL++ + + P + + +QV+ DG
Sbjct: 72 CEYSMAAFSTGERRRRGKTDRRATELSLVIGQTLEAAIMTHLLPRSQIDIYVQVLQADGG 131
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
INAA AL DAGIPM+ L V+ C + +LD
Sbjct: 132 TRAACINAASMALADAGIPMRDLVVS-CAAGYLNSTPLLD 170
>gi|396460216|ref|XP_003834720.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
gi|312211270|emb|CBX91355.1| similar to exosome complex exonuclease RRP41 [Leptosphaeria
maculans JN3]
Length = 280
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 72/147 (48%), Gaps = 11/147 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAG-----TKKNENPEK 59
R DGR N+LR + S A GS+ G+TK+L +V GP G K
Sbjct: 14 RLDGRRWNELRRIHAQISTQAAADGSSYLEMGNTKILVSVTGPAEGRQSGQRGGQNGQGK 73
Query: 60 ASIEVIWKPRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+E+ + +G + K E E L+ + + +L + P++T ++ I ++ DG
Sbjct: 74 VEVEINFAGFSGVDRRKRKSDKRTSEMEHCLRSAFEGVLLLHLYPHSTITLNIHIISQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVA 140
+LL INAA AL+DAGIPM VA
Sbjct: 134 SLLAACINAATLALIDAGIPMSDYLVA 160
>gi|213407144|ref|XP_002174343.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
gi|212002390|gb|EEB08050.1| exosome complex exonuclease RRP41 [Schizosaccharomyces japonicus
yFS275]
Length = 243
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR N++R C + AHGS+ G+T+VL V GP + K EKA I
Sbjct: 14 RQDGRRWNEMREFDCRIGVEKTAHGSSFIQHGNTRVLCNVNGPSEPYIKGKSKQEKAFIN 73
Query: 64 V---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V I + + + K +E + ++RT + + + P + S+ + V+ DDG
Sbjct: 74 VELNFAPFSLIDRKKRHRSDKRIQEQCVAIQRTFEQAIQVELYPKSQISISLNVLEDDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY---CILDPTKLEE 160
+ INAA AL+DAGI M V CC+ Y +LD EE
Sbjct: 134 AIATCINAATLALIDAGIAM----VDYVCCATAGIYETQVLLDLNTNEE 178
>gi|52548823|gb|AAU82672.1| ribonuclease PH [uncultured archaeon GZfos19A5]
Length = 247
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 92/208 (44%), Gaps = 17/208 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++LRP+ +L RA GS GD KV+AAVYGP+ ++ K ++ V
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGDNKVIAAVYGPREMHPRHAQDAKMAV-V 71
Query: 65 IWKPRTGQI--------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ G + EI + + + + + P V ++++ D
Sbjct: 72 KFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVELLQSDAG 131
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVF 171
INAA AL DAGIPMK L +I +G +LD E+ + A +
Sbjct: 132 TRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGEMVLDLNAAEDNNGEADMPIAMIAR 190
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSV 199
N+I ++ +G + E E G+ +V
Sbjct: 191 TNTITALQMDGR--LTKEEFERGLKLAV 216
>gi|212543511|ref|XP_002151910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
gi|210066817|gb|EEA20910.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces marneffei ATCC 18224]
Length = 283
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 74/152 (48%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR L S + GS+ S G+T ++ V+GP + + +A ++V
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCTVHGPHETSGAGSSATEAVVDV 74
Query: 65 I----------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
K R G + + LK QS ++ P++T +V + V+ DG+
Sbjct: 75 DVNIAGFAGVDRKRRAGGSDRQSTQLSTALKSAFQSHLHTSLYPHSTITVQVSVLSSDGS 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
L AINA ALVDAGIPM L +C C+A
Sbjct: 135 LFAAAINACTLALVDAGIPMPGL---LCGCTA 163
>gi|225715268|gb|ACO13480.1| Exosome complex exonuclease RRP41 [Esox lucius]
Length = 245
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKK-------- 53
R DGR +LR + + +A GSA QG+TK LA VYGP + K
Sbjct: 13 RLDGRKATELRKVQARMGVFAQADGSAYIEQGNTKALAVVYGPHEVRMSRSKTLHDRAVI 72
Query: 54 NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
N A+ + R + E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSTEMSLHLKQTFEAAVLTNLYPRSQIDIYVKILQSDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA A++DAGIPM+ +C C+A
Sbjct: 133 GNYSACVNAATLAVIDAGIPMRDY---VCACTA 162
>gi|340727523|ref|XP_003402091.1| PREDICTED: exosome complex component MTR3-like [Bombus terrestris]
Length = 273
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/202 (31%), Positives = 98/202 (48%), Gaps = 27/202 (13%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI- 62
+R+D R N++R + I+ +A GSA G+TKV+ +V+ P+ + KN + I
Sbjct: 36 ERSDKRTNNEMRKIFLKAGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNSYYAQGEIY 95
Query: 63 -EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
E + P + Q EK+Y +IL+R L+ L PN V + V+ + G+
Sbjct: 96 CEFKFAPFSCQKRKVHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAGSS 155
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
L AI AA AL +AG+PM L A ++ Y ++DPT +EE +I
Sbjct: 156 LAAAIMAASTALANAGVPMFGLVTASTIGIYDNHY-LMDPTDIEE-------------AI 201
Query: 176 LSVLPEGSSLVQGEPMEHGIIT 197
+ P+ QG+ HGIIT
Sbjct: 202 CNTQPDN----QGD-FNHGIIT 218
>gi|242046408|ref|XP_002461075.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
gi|241924452|gb|EER97596.1| hypothetical protein SORBIDRAFT_02g040250 [Sorghum bicolor]
Length = 261
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
RADGR+ + RP A GSA G TKV+ +V+GP+ K +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDIGRLNC 98
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 99 NVSYTTFATPVRGQ-GADNKEYSSMLYKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 157
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
I+ A AL DAGI M L +V++ C I+DPT EE G + F
Sbjct: 158 IISCASLALADAGIMMYDLVTSVSVSCFGKN---IIIDPTSDEEAWQDGSLVVAF 209
>gi|298709840|emb|CBJ26180.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 244
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 87/192 (45%), Gaps = 18/192 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR ++R + + A GSA G TK++A V GP+ T++ + I
Sbjct: 14 RPDGRRGREIRRVRSRFGVFKGADGSAYLEMGQTKIIAIVKGPREVTRRQDRKYDTGIVN 73
Query: 63 -EVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
E P +G K + E + +K + +L + P T + + V+ DG
Sbjct: 74 CEYNVAPFSGSERKKRRPTERKGMEIALAVKEVFEGAIMLHLYPRTQIDIYLHVIQSDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
+LP INAA ALVDAG+ M L VA C G ++D + EQ + G P
Sbjct: 134 VLPVGINAASLALVDAGVAMSDLVVA-CSAGYLDGMPVMDLNYV-EQALGG------PYL 185
Query: 175 ILSVLPEGSSLV 186
++VLPE L+
Sbjct: 186 PVAVLPEKDKLL 197
>gi|332017939|gb|EGI58588.1| Exosome complex exonuclease RRP41 [Acromyrmex echinatior]
Length = 272
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 12/148 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR +LR + + +A GSA G+TKVLAAVYGP+ + + + N KA I
Sbjct: 13 RIDGRRALELRQIRMRMGVFGQADGSAYIEHGNTKVLAAVYGPRQSRSSASRNSTKAIIN 72
Query: 64 -----VIWKPRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
++ +G+ + +E L+ +++I L + P + V ++V+ D
Sbjct: 73 CQYSMAVFSFTSGERKRRPRGDWKSQERSAQLRHAMEAIIHLELYPRSQIDVFVEVLQVD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVA 140
G+ ++NAA AL+DAGIP+K+ A+
Sbjct: 133 GSDYCASVNAATLALIDAGIPIKNYAIG 160
>gi|350409108|ref|XP_003488612.1| PREDICTED: exosome complex component RRP41-like [Bombus impatiens]
Length = 270
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 85/181 (46%), Gaps = 28/181 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENP---- 57
R DGR +LR + + +A GSA QG+TK+L VYGP + T +N
Sbjct: 14 RPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGIVN 73
Query: 58 --------EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
+S E KPR + +E + LK +++I L I P + + ++ +
Sbjct: 74 CQYSMAVFSLSSGERKRKPRGD---RKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEAL 130
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVA-----ICCCSAES-----GYCILDPTKLE 159
DG+ ++NAA AL+DAGIP+K+ A+ I S+E G +LD LE
Sbjct: 131 QVDGSEYCASVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLE 190
Query: 160 E 160
E
Sbjct: 191 E 191
>gi|303281836|ref|XP_003060210.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458865|gb|EEH56162.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 245
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 93/166 (56%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIE 63
R DGR P + R + C+ +L A GSA + G+T+V+ AV+GP+ + E + E+A I+
Sbjct: 10 RLDGRRPKETRQMRCAMGVLPAADGSAEFRAGNTRVMCAVHGPRECVNRGERDDERAIIK 69
Query: 64 VIWKP---RTGQ---IGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ TG+ GK ++ E +++++ L++ ++ + P + +V+IQV+ DG
Sbjct: 70 CEFSQAAFSTGERRARGKGDRRSVELALVIRQALEATVLVHLAPRSEINVMIQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+ AINAA A+ +AGIPMK +A C G +LD +EE
Sbjct: 130 VRAAAINAAVLAIANAGIPMKD-TMAACSAGYLDGTPLLDLNYVEE 174
>gi|224132514|ref|XP_002328307.1| predicted protein [Populus trichocarpa]
gi|222837822|gb|EEE76187.1| predicted protein [Populus trichocarpa]
Length = 263
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 29/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R+DGR +Q R ++ A GSA G+TKV+ +V+GP+ K +K +
Sbjct: 41 RSDGRGFHQCRSAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDKGKLNC 100
Query: 65 IWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
T GQ G KE+ +L + L+ +L P TT V V+ G+ LP
Sbjct: 101 NVSYTTFATTVHGQ-GSDNKEFSTMLHKALEGAVMLETFPKTTVDVFALVLESGGSDLPV 159
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
I+ A AL DAGI M L V++ C I+DPT LEE+ +
Sbjct: 160 VISCASLALADAGIMMYDLVAGVSVSCLGRN---LIIDPT-LEEESFQ------------ 203
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS ++ P + I G S + ++ A +KL+ LR L+
Sbjct: 204 ----DGSLMITCMPSHYEITQLTITGEWSTANLNEAMQLCLDACSKLAKILRSCLK 255
>gi|336383937|gb|EGO25086.1| exoribonuclease, exosome component 4 [Serpula lacrymans var.
lacrymans S7.9]
Length = 265
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R+DGR +LR ++ S A GS + QG T VL +V+GP +A + ++A++
Sbjct: 14 RSDGRRQYELRDISIDLSNHGSADGSVTIRQGLTHVLVSVFGPHEARVRSQTLHDRANLN 73
Query: 64 VIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V G+ K E ++ T + + + P + V +QV+ DG
Sbjct: 74 VEVNVSAFSAGERRKRSRADKRLLELAATIRSTFEPVIQTHLYPRSQIDVFVQVIQQDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LL IN AL AGIP+ A+ S +LD T LEE + F + P S
Sbjct: 134 LLQTCINGTTLALAHAGIPLFDFVCAV-TGGVHSSSPMLDLTTLEENDIPNFTVAIMPKS 192
>gi|343426755|emb|CBQ70283.1| probable exosome complex exonuclease rrp41 [Sporisorium reilianum
SRZ2]
Length = 272
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 86/186 (46%), Gaps = 21/186 (11%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKAS 61
R DGR +LR +A S A GSA +QG T V A V+GP+ A + N ++AS
Sbjct: 13 RVDGRKQYELRSIAIQLGGSQDTAADGSAQITQGLTIVSATVFGPREARSGANVIHDRAS 72
Query: 62 --IEVIWKPRTGQIGKPEK-----------EYEIILKRTLQSICILTINPNTTTSVIIQV 108
+EV P G E+ E+ +K T + + + P + + +QV
Sbjct: 73 LNVEVSLAP----WGSMERRRRNRGDRRLLEFASSIKSTFEPVIHTHLYPRSQIDIFVQV 128
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
DG +LP AINA+ AL+DA I M H VA C S +LD + EEQ +
Sbjct: 129 HQQDGGVLPAAINASTLALLDASIAM-HDFVASVSCGIHSTSAMLDLSNTEEQDLPHLTV 187
Query: 169 LVFPNS 174
V P +
Sbjct: 188 AVLPRT 193
>gi|19112052|ref|NP_595260.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe 972h-]
gi|29336579|sp|O42894.1|RRP46_SCHPO RecName: Full=Exosome complex component rrp46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|2956749|emb|CAA17913.1| exosome subunit Rrp46 (predicted) [Schizosaccharomyces pombe]
Length = 226
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL R+ GS+ W QG +V+ V GP ++E KA++EV+ +P +G EK
Sbjct: 6 ILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKMISS 65
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGA-LLPCAINAACAALVDAGIPMKHLAVAI 141
+ L+ L P T V IQ++ +DG L IN A AL+DAGI +K++ AI
Sbjct: 66 RIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYIPCAI 125
Query: 142 CC 143
C
Sbjct: 126 NC 127
>gi|400596874|gb|EJP64630.1| 3' exoribonuclease family protein [Beauveria bassiana ARSEF 2860]
Length = 270
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 17/163 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-------KAGTKKNENP 57
R DGR N+LR L A GS+ G TKV+ V GP K G + N +
Sbjct: 14 RVDGRRWNELRRLHALIRTQDAADGSSYLEMGHTKVMCVVSGPSEQQQNQKRGGQANASR 73
Query: 58 EKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ A++ V + + + G+ K +E EI + + L S I P+++ S+ + V
Sbjct: 74 DGATVNVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKALSSNLHTHIFPHSSISISLHV 133
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151
+ DG+LL +NA AL+DAGIPM +A C + S +
Sbjct: 134 LSQDGSLLAALLNATTLALIDAGIPMNDY-IAACTAGSTSSFA 175
>gi|268552543|ref|XP_002634254.1| C. briggsae CBR-EXOS-4.1 protein [Caenorhabditis briggsae]
gi|206557764|sp|A8WQQ5.1|EXOS4_CAEBR RecName: Full=Putative exosome complex component RRP41
Length = 240
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP ++ +I
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVC 69
Query: 65 IWKPRT----GQIGKPE---KEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T + +P K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
L +NA AL DAGIPMK +A A C E+ I+D T EE +
Sbjct: 130 LAACVNATSLALADAGIPMKGIASAATCGIVETKP-IVDLTSREETDL 176
>gi|41469640|gb|AAS07363.1| putative exoribonuclease [Oryza sativa Japonica Group]
gi|108712055|gb|ABF99850.1| 3' exoribonuclease family, domain 1 containing protein, expressed
[Oryza sativa Japonica Group]
gi|125588609|gb|EAZ29273.1| hypothetical protein OsJ_13338 [Oryza sativa Japonica Group]
gi|215768717|dbj|BAH00946.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 95/236 (40%), Gaps = 29/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
RADGR+ + RP A GSA G TKV+ +V+GP+ K +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 98
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 99 NVSYTTFATPIRGQ-GTDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 157
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
I+ A AL DAGI M L +V++ C I+DPT EE
Sbjct: 158 IISCASLALADAGIMMYDLVTSVSVSCFGKN---IIIDPTSDEE---------------- 198
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS +V P I G S + +E A +KL D LR L+
Sbjct: 199 -AWQDGSLMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRERLK 253
>gi|242005051|ref|XP_002423388.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
gi|212506432|gb|EEB10650.1| Exosome complex exonuclease RRP41, putative [Pediculus humanus
corporis]
Length = 253
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR ++LR + C + + GSA G+TKVLAAVYGP + + A++
Sbjct: 11 RLDGRRASELRQIRCKLGVFSQPDGSAYIEMGNTKVLAAVYGPHQVRGRTKPLLDAAVIN 70
Query: 63 -----------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
E +PR K +E + L + L + + P + + ++V+
Sbjct: 71 CQYSSAVFSTEERKKRPRGD---KKSQEKSMHLCQALSAAIKTELYPKSQIDIFVEVLQS 127
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DG A+N + AL+DAGIP+K + A ++D T LEE
Sbjct: 128 DGGSFSAAVNVSTLALIDAGIPLKEYVTSCTASLANENIPLVDVTYLEE 176
>gi|308509680|ref|XP_003117023.1| CRE-CRN-5 protein [Caenorhabditis remanei]
gi|308241937|gb|EFO85889.1| CRE-CRN-5 protein [Caenorhabditis remanei]
Length = 214
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP N E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I++ T+ L + P+TT +V I + DDG++ AIN AC AL+D
Sbjct: 63 ----DNKFSVLNNIIQSTISKAINLELFPHTTIAVTIHGIQDDGSIGAVAINGACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + + + I+DPT +E G
Sbjct: 119 NGMPFEAVFCGVLVVRVKDEL-IIDPTAKQEASSTG 153
>gi|297803352|ref|XP_002869560.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
gi|297315396|gb|EFH45819.1| hypothetical protein ARALYDRAFT_492045 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 12/168 (7%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-- 58
++ R DGR +Q RP + A GSA G+TKV+ +V+GP+ K +
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVFSDVG 89
Query: 59 ----KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
S P GQ G KEY +L + L+ + I+ P TT V V+ G+
Sbjct: 90 RLNCNVSYTTFASPTLGQ-GTDHKEYSSMLHKALEGVIIMETFPKTTVDVFALVLESGGS 148
Query: 115 LLPCAINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEE 160
L I+ A AL DAGI M L AV++ C ++DP EE
Sbjct: 149 DLSVVISCASLALADAGIMMYDLITAVSVSCIGKS---LMIDPVTEEE 193
>gi|449303034|gb|EMC99042.1| hypothetical protein BAUCODRAFT_41389, partial [Baudoinia
compniacensis UAMH 10762]
Length = 198
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 71/136 (52%), Gaps = 10/136 (7%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L RA GS S+S +LAAV GP +++E PE+A+IEV +P G G E+ E +
Sbjct: 10 LSRADGSVSFSNNLYTILAAVNGPVEVQRRDELPEEAAIEVNIRPVAGVGGPRERWLESV 69
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVH----------DDGALLPCAINAACAALVDAGIP 133
+ L+S+ ++ ++P T + +Q+ D ++LP +NAA AL D G+P
Sbjct: 70 VTAVLRSVLLVHMHPRTLIQITLQITKLPTQKLRGAWKDVSVLPALVNAAFLALADGGLP 129
Query: 134 MKHLAVAICCCSAESG 149
M+ A +E G
Sbjct: 130 MQSTVTAELFTISEDG 145
>gi|354547529|emb|CCE44264.1| hypothetical protein CPAR2_400650 [Candida parapsilosis]
Length = 241
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + + N +KA++
Sbjct: 10 RIDGRRWNELRRFECRVNTHPNSSDGSSYVEQGNTKVICTVQGPTEPISRAQMNQDKANL 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + K E L+RT + +L + P T ++ +QV+ DG
Sbjct: 70 EVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSVLLHLYPRTNITINVQVLSQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+L NA A++DAGI M ++ C + +LD LEE
Sbjct: 130 GMLAAITNAITLAIIDAGIAMYDYVSSVSCGLIDQS-PLLDLNNLEE 175
>gi|424811892|ref|ZP_18237132.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
gi|339756114|gb|EGQ39697.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus
Nanosalinarum sp. J07AB56]
Length = 237
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASI 62
+R DGR ++LR + +L A GSA G+T+V+A+V+GP+ K+ + P++A I
Sbjct: 14 NRLDGRKRDELRETSMEVDVLENAEGSARVETGNTRVVASVFGPQELHPKHLQEPDRAVI 73
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ + + R G + KE ++ K+ L L PN + ++++ DG
Sbjct: 74 KMRYNMAPFSVDDRMRPGP-NRRAKEIGLVSKKALAPAVDLHEFPNAGIDISMEIIESDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
INAA AL DAGIPM+ L + C+A
Sbjct: 133 GTRVTGINAASLALADAGIPMEGL---VSACAA 162
>gi|46135695|ref|XP_389539.1| hypothetical protein FG09363.1 [Gibberella zeae PH-1]
Length = 238
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R DGR N+LR L A GS+ G TKV+ V GP ++
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDMA 73
Query: 54 --NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
N N A + + + G+ K +E E + L S + PN++ S+ + V+
Sbjct: 74 AINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQ 133
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 163
DG+LL INA AL+DAGIPM +A C + S Y +LD EEQ++
Sbjct: 134 DGSLLAALINATTLALIDAGIPMSDY-IAACTAGSTSTYAAGDDNADPLLDLNNQEEQEL 192
>gi|443895550|dbj|GAC72896.1| inositol polyphosphate multikinase, component of the ARGR
transcription regulatory complex [Pseudozyma antarctica
T-34]
Length = 266
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 88/192 (45%), Gaps = 29/192 (15%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKAS 61
R DGR +LR +A S A GSA + G T V A V+GP+ A + N ++AS
Sbjct: 13 RVDGRKQYELRSIAIQLGGSEDTTADGSAQITHGLTTVSATVFGPREARSGGNMLHDRAS 72
Query: 62 --IEVIWKPRTGQIGKPEK-----------EYEIILKRTLQSICILTINPNTTTSVIIQV 108
+EV P G E+ E+ +K T + + + P + + + V
Sbjct: 73 LNVEVALAPW----GSMERRRRNRGDRRLVEFASAIKSTFEPVVHTHLYPRSQIDIFVHV 128
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
DG +LP AINAA AL+DAGI M H VA C S +LD + EE +
Sbjct: 129 HQQDGGVLPAAINAATLALLDAGIAM-HDFVAAVSCGIHSTAALLDLSNAEESDL----- 182
Query: 169 LVFPNSILSVLP 180
PN ++VLP
Sbjct: 183 ---PNLTVAVLP 191
>gi|408395559|gb|EKJ74738.1| hypothetical protein FPSE_05073 [Fusarium pseudograminearum CS3096]
Length = 266
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R DGR N+LR L A GS+ G TKV+ V GP ++
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQQQRRGGQQAGRDMA 73
Query: 54 --NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
N N A + + + G+ K +E E + L S + PN++ S+ + V+
Sbjct: 74 AINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANALSSNLHTHLFPNSSISISLHVLSQ 133
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 163
DG+LL INA AL+DAGIPM +A C + S Y +LD EEQ++
Sbjct: 134 DGSLLAALINATTLALIDAGIPMSDY-IAACTAGSTSTYAAGDDNADPLLDLNNQEEQEL 192
>gi|241954284|ref|XP_002419863.1| 3'-to-5' phosphorolytic exoribonuclease, putative; exosome complex
exonuclease, putative; ribosomal RNA processing protein,
putative [Candida dubliniensis CD36]
gi|223643204|emb|CAX42078.1| 3'-to-5' phosphorolytic exoribonuclease, putative [Candida
dubliniensis CD36]
Length = 240
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 102/226 (45%), Gaps = 35/226 (15%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGT-KKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP T + ++ E+A+I
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPTLRSQQHSERANI 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + + E + L++T + ++ + P T + +QV+ DG
Sbjct: 70 EVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM---------- 163
+L IN+ AL+DAGI M + C + +LD LEE M
Sbjct: 130 GMLATIINSITLALIDAGISMYDYVSGVSCGLYDQT-PLLDVNNLEEHDMSCLTIGVIGK 188
Query: 164 -KGFAYLVFPN--------SILSVLPEGS----SLVQGEPMEHGII 196
+ A L+ + S+LS+ GS L+ E +HGII
Sbjct: 189 SEKLALLLLEDKMPLDRLESVLSIGIAGSHKIRELMDQEVRKHGII 234
>gi|238881631|gb|EEQ45269.1| exosome complex exonuclease RRP41 [Candida albicans WO-1]
Length = 240
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + + ++ E+A+I
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANI 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + + E + L++T + ++ + P T + +QV+ DG
Sbjct: 70 EVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
+L IN+ AL+DAGI M + V+ C +LD LEE M
Sbjct: 130 GMLAAVINSITLALIDAGISM-YDYVSGVSCGVYDQTPLLDVNNLEEHDM 178
>gi|254570999|ref|XP_002492609.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|238032407|emb|CAY70430.1| 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the
exosome [Komagataella pastoris GS115]
gi|328353384|emb|CCA39782.1| exosome complex component RRP41 [Komagataella pastoris CBS 7435]
Length = 246
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 13/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSILH--RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
R DGR N+LR C + H A GSA G+TK++ + GP T+ N +K S+
Sbjct: 10 RVDGRRWNELRRFYCRINT-HPIVADGSAYVEAGNTKIVCLLNGPHEPTRSQMNTQKGSL 68
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ + + + + +E ILK T + + IL P T V ++V+ DG
Sbjct: 69 DIKLHVSPFSTTERRKVTRNDRRIQELSTILKNTFEQVVILKNYPRTIIEVNVRVLAQDG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
LL NA ALVDAGI + A+ ++ +LD +LEEQ +
Sbjct: 129 GLLAACCNAITLALVDAGIALYDYISAVSAGVFDN-QILLDLNRLEEQDL 177
>gi|195107981|ref|XP_001998571.1| GI24046 [Drosophila mojavensis]
gi|193915165|gb|EDW14032.1| GI24046 [Drosophila mojavensis]
Length = 239
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 21/221 (9%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C + L R GS +SQG T V+AAV GP +N + E + +E ++P+ G
Sbjct: 13 KLREMHCKFNPLSRCDGSVMYSQGATVVIAAVLGPIEVKTQNLSIEGSYLECNYRPKAGL 72
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
E+ E ++ L+ + P S+ +Q + D G++ CA+NAAC A++ G+
Sbjct: 73 PQVKERIREAAIRDVLELALLSEAYPRAKMSLQVQELEDRGSIDACALNAACLAMLIGGL 132
Query: 133 PMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPME 192
P+K+ A+ C E G ILDP + E Q K F + +L LVQ
Sbjct: 133 PLKYSFAAVHCIINEKGDFILDPEESETQHQKASFTFAFDSVDGDLL-----LVQ----- 182
Query: 193 HGIITSVTHGAMSVDDY--FHCLERGRAASAKLSDFLRRSL 231
T GA + + C+ R ASA++ DF R ++
Sbjct: 183 -------TKGAFKIAQFNDIECI--CRQASAEIFDFYRSNI 214
>gi|414887731|tpg|DAA63745.1| TPA: hypothetical protein ZEAMMB73_187174 [Zea mays]
Length = 261
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
RADGR+ + RP A GSA G TKV+ +V+GP+ K +
Sbjct: 39 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNC 98
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 99 NVSYTTFATPVRGQ-GADNKEYSSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 157
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
I+ A AL DAGI M L +V++ C I+DPT EE G + F
Sbjct: 158 IISCASLALADAGIMMYDLVTSVSVSCFRKN---IIIDPTSDEEAWQDGSLVVAF 209
>gi|340712754|ref|XP_003394920.1| PREDICTED: exosome complex component RRP41-like isoform 1 [Bombus
terrestris]
Length = 270
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 86/178 (48%), Gaps = 22/178 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENPE--- 58
R DGR +LR + + +A GSA QG+TK+L VYGP + T +N
Sbjct: 14 RPDGRRALELRQIRVKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRNTTKGIVN 73
Query: 59 -KASIEVI-----WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ S+ V + R + + +E + LK +++I L I P + + ++ + D
Sbjct: 74 CQYSMAVFSLSSGERKRRPRGDRKSQERSLQLKHAMEAIIHLEIYPRSQIDIYVEALQVD 133
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVA-----ICCCSAES-----GYCILDPTKLEE 160
G+ ++NAA AL+DAGIP+K+ A+ I S+E G +LD LEE
Sbjct: 134 GSEYCTSVNAATLALIDAGIPIKNYAIGCTVTLINNPSSEDEDNTLGRGVLDANYLEE 191
>gi|409077801|gb|EKM78166.1| hypothetical protein AGABI1DRAFT_101423 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426199140|gb|EKV49065.1| hypothetical protein AGABI2DRAFT_191204 [Agaricus bisporus var.
bisporus H97]
Length = 260
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R+DGR +LR + + + A GSA + G T+VL +V+GP+ +++ ++A+I
Sbjct: 14 RSDGRRQFELREVTINLAQQGHADGSAIITHGLTQVLVSVFGPREAKMRSQTIHDRANIN 73
Query: 64 VIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V G+ K E LK T + + T+ P + V + V+ DG
Sbjct: 74 VDVNVAAFSAGERRKRSRGDKRILEIASTLKSTFEPVVQTTLYPRSQIDVYVTVLQQDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LL IN AL++AGIPM A+ S +LD T LEE + + P +
Sbjct: 134 LLQTCINGTTLALINAGIPMLDFVCAV-TGGVHSTSPLLDLTTLEENDVPHVTVAIMPKT 192
>gi|356539380|ref|XP_003538176.1| PREDICTED: exosome complex component MTR3-like [Glycine max]
Length = 255
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 98/234 (41%), Gaps = 25/234 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 33 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 92
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ IL P TT V V+ G+ LP
Sbjct: 93 NVSFTTFATPIRGQ-GSDHKEYCAMLHKALEGAIILETFPKTTVDVFALVLESSGSDLPV 151
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSV 178
I+ A AL DAGI M + VA S + ++DP LEE+ +
Sbjct: 152 VISCASLALADAGIMMYDI-VASVSVSCFNKNLVIDPI-LEEE----------------I 193
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS ++ P + I G S ++ A AKL+ +R L+
Sbjct: 194 GQDGSLMITCMPSRYEITQLTVTGEWSTTKINEGMQLCLDACAKLAKIMRSCLK 247
>gi|302829841|ref|XP_002946487.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
gi|300268233|gb|EFJ52414.1| hypothetical protein VOLCADRAFT_108889 [Volvox carteri f.
nagariensis]
Length = 245
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 86/166 (51%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P +LR + C +L A GSA + G+TKVLAAV+GP A TK+ + E A+I V
Sbjct: 10 RLDGRRPRELRRINCQLDVLSSADGSAIFEMGNTKVLAAVFGPHAVTKRADLREDAAIVV 69
Query: 65 ----------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ R G+ + E ++++ TL+ + + P + V +QV+ DG
Sbjct: 70 CEYSMAAFSTGERRRRGKGDRRSTELSMVIRNTLEQAILRELMPRSQIDVYVQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINAA AL AG+P++ L VA C G +LD E+
Sbjct: 130 TRCAAINAAVLALAAAGVPLRDL-VASCAAGYLDGTPLLDLNFTED 174
>gi|68466049|ref|XP_722799.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|68466344|ref|XP_722654.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444644|gb|EAL03917.1| likely exosome component Ski6p [Candida albicans SC5314]
gi|46444799|gb|EAL04071.1| likely exosome component Ski6p [Candida albicans SC5314]
Length = 240
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + + ++ E+A+I
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANI 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + + E + L++T + ++ + P T + +QV+ DG
Sbjct: 70 EVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
+L IN+ AL+DAGI M + C + +LD LEE M
Sbjct: 130 GMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQT-PLLDVNNLEEHDM 178
>gi|19114994|ref|NP_594082.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|21759394|sp|O42872.1|RRP41_SCHPO RecName: Full=Exosome complex component ski6; AltName:
Full=Ribosomal RNA-processing protein 41
gi|2706461|emb|CAA15919.1| exosomal 3'-to-5' phosphorolytic exoribonuclease Rrp41 (predicted)
[Schizosaccharomyces pombe]
Length = 242
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKAS 61
R DGR +++R C I +GSA G+TKVL V GP +K + +
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVN 72
Query: 62 IEV-IWKPRTGQIGKPEKEYEII------LKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+E+ I T + K K I L+ T + I + P + SV + V+ DDGA
Sbjct: 73 VEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGA 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEEQKMKGFAYLVF 171
++ INA AL+DAGIP+K +CC +A ES +LD LEE + V
Sbjct: 133 VMASCINATTLALIDAGIPVKDF---VCCSTAGIVESDM-LLDLNSLEESALSWLTVAVL 188
Query: 172 PN 173
N
Sbjct: 189 GN 190
>gi|386876598|ref|ZP_10118697.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
gi|386805560|gb|EIJ65080.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus salaria
BD31]
Length = 244
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 27/243 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++ R + L A GSA GD K+L V+GP+ K N + +
Sbjct: 17 RCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + +G+ +E EI ++K L+ +L P T V I+V+ DG
Sbjct: 77 VRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
A+ AA AL DAGIPM+ + AI + ILD E+Q + + + S+
Sbjct: 137 RCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTVILDVNNEEDQAGQADMPIGYMPSL 195
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
E +L+Q G ++ ++Y C++ G + + +++LQ K
Sbjct: 196 -----EKITLLQ------------LDGVLTPEEYKKCVQVGVDGCKIVYELQKKALQEKY 238
Query: 236 PGD 238
G+
Sbjct: 239 FGN 241
>gi|330508837|ref|YP_004385265.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
gi|328929645|gb|AEB69447.1| exosome complex exonuclease 1 [Methanosaeta concilii GP6]
Length = 253
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 106/236 (44%), Gaps = 30/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP------------KAGTK 52
R DGR ++LRP+ IL RA GS G KV+AAVYGP +A +
Sbjct: 17 RLDGRRADELRPVKIEVGILARADGSCYIEMGGNKVIAAVYGPREVHPRHLQEVTRAIVR 76
Query: 53 KNENPEKASIEVIWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVH 110
N S+E +P G + YE+ + + L+ + + + P + V ++V+
Sbjct: 77 YRYNMASFSVEERKRP-----GPDRRSYELSKVSREALEPVILTSFFPRSVIDVFVEVLQ 131
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG-FAYL 169
D INAA AL DAGIPMK + ++ C +LDP K E+ +
Sbjct: 132 ADAGTRTAGINAAAVALADAGIPMKSM-ISSCAAGKVGDTIVLDPMKEEDNFGQADLPIA 190
Query: 170 VFPNSILSVLPEGSSLVQGEPMEHG-IITSVTHGAMSVDDYFHCLERGRAASAKLS 224
+ PN ++++ +L P E G +T GA + + L+R RA AK S
Sbjct: 191 MTPNGDITLMQMDGNLT---PDEFGQAVTMAMKGAKDI----YELQR-RALVAKYS 238
>gi|1749490|dbj|BAA13803.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 242
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKAS 61
R DGR +++R C I +GSA G+TKVL V GP +K + +
Sbjct: 13 RNDGRRWDEMRNFQCRFGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVN 72
Query: 62 IEV-IWKPRTGQIGKPEKEYEII------LKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+E+ I T + K K I L+ T + I + P + SV + V+ DDGA
Sbjct: 73 VEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGA 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEEQKMKGFAYLVF 171
++ INA AL+DAGIP+K +CC +A ES +LD LEE + V
Sbjct: 133 VMASCINATTLALIDAGIPVKDF---VCCSTAGIVESDM-LLDLNSLEESALSWLTVAVL 188
Query: 172 PN 173
N
Sbjct: 189 GN 190
>gi|405119992|gb|AFR94763.1| hypothetical protein CNAG_01381 [Cryptococcus neoformans var.
grubii H99]
Length = 299
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/285 (24%), Positives = 111/285 (38%), Gaps = 54/285 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P QLRPL S L RA GSA ++ G VLA+ GP + E P+KA+ EV
Sbjct: 9 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 68
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV--------------- 109
+P G P + L+ I L +P + +++Q +
Sbjct: 69 NHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSLVPSTGRALYGSVIGA 128
Query: 110 --------------HDDGALLP---------------------CAINAACAALVDAG-IP 133
DD A +P +INA+ AL+ AG +
Sbjct: 129 EGVGAEQNTWPATDKDDYAYVPESRRDAARISPAAGYTFTARAASINASTLALLSAGTVS 188
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKG-FAYLVFPNSILSVLPEGSSLVQGEPME 192
+ L +A+ G +LDP EE++ K F + + E +++ E
Sbjct: 189 ILALPIAVALVVTTKGRVMLDPEADEEKQAKARFGFGWAWGAAFGTANEENNVEAAGQSE 248
Query: 193 HG--IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
G ++ G + ++ L+ R AS + +F+R L + L
Sbjct: 249 KGAELVWIENEGDFTRQEWSEALQMSRVASKAILEFIRTQLDAHL 293
>gi|383847639|ref|XP_003699460.1| PREDICTED: exosome complex component RRP41-like [Megachile
rotundata]
Length = 273
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 32/199 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENPEKAS 61
R DGR +LR + + +A GSA QG+TK+L VYGP + T ++ +
Sbjct: 14 RPDGRRALELRQIRIKMGVFGQADGSAYIEQGNTKILVTVYGPHQPRGSTGRSTSKVTKG 73
Query: 62 I---------------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII 106
I E KPR + +E + LK +++I L + P + + +
Sbjct: 74 IVNCQYSMAVFSLSSGERKRKPRGD---RKSQEKSLQLKHAMEAIIHLELYPRSQIDIYV 130
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES----------GYCILDPT 156
+V+ DG+ +INA+ AL+DAGIP+K+ AV S G +LD
Sbjct: 131 EVLQVDGSEYCASINASTLALIDAGIPIKNYAVGCTVTLINSSSLDNEDSSLGTGVLDAN 190
Query: 157 KLEE-QKMKGFAYLVFPNS 174
+EE + + + PNS
Sbjct: 191 YIEECNRGVTLSVIALPNS 209
>gi|366992712|ref|XP_003676121.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
gi|342301987|emb|CCC69759.1| hypothetical protein NCAS_0D01780 [Naumovozyma castellii CBS 4309]
Length = 246
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + H + GS+ QG+ KV+ V GPK T +++ + EKA +
Sbjct: 13 RLDGRRWNELRRFECSINTHSHASDGSSYLEQGNNKVITLVKGPKEPTLRSQMDTEKAIL 72
Query: 63 EVIWKPRTGQIGKPEK------------EYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ Q K E+ E + L RT + +L I P T + + V+
Sbjct: 73 KI--SVNITQFSKFERSKSSHKNERRVLEMQTALIRTFEKNVMLNIYPRTLIDIEVHVLQ 130
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
DG ++ IN AL+DAGI M + ++ +LD LEE M
Sbjct: 131 QDGGIMGSLINGITLALIDAGIAMYDYISGVSIGLYDTT-PLLDVNSLEENAM 182
>gi|391346094|ref|XP_003747314.1| PREDICTED: exosome complex component MTR3-like [Metaseiulus
occidentalis]
Length = 271
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +LRP ++ A GS QG TKV+AAV+GP+ T++ E KA +
Sbjct: 34 RKDGRRDEELRPRIFESGLVSDASGSGYVEQGSTKVVAAVFGPREVTRRKEFSLKAQLRC 93
Query: 65 I--WKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+ ++P R I E+ Y L+ +L+ + L P + + + + +DG +L
Sbjct: 94 VFTFEPFATPGGRQENISLLEQRYSSWLEESLKPVVQLRRYPKASIDIRVTCLENDGGVL 153
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ A AL +GI L + + A ++DP+ EE
Sbjct: 154 AAALTACGIALATSGIETFDLVIGV-NLRAHGDRVLMDPSHAEE 196
>gi|328773049|gb|EGF83086.1| hypothetical protein BATDEDRAFT_84610 [Batrachochytrium
dendrobatidis JAM81]
Length = 253
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RAD R P+Q+RP+ + +A+GSA G+ KV+ AVYGP+ + + + +++
Sbjct: 31 RADKRRPDQIRPIYTKAGTIPQANGSAYIETGNLKVICAVYGPRQSSSRQLSSSTGTLQC 90
Query: 65 IWK--PRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL- 115
+K P +G+ K EKE+ ++L++ L L P T V + V+ +DG++
Sbjct: 91 DFKFAPFSGEKRKGYAKDDQEKEFSMVLEQALTPSIRLENYPKFTIQVFVIVLENDGSMS 150
Query: 116 -LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
L AI+ A AL +AGI M + A LD L+E+ ++ A LV S
Sbjct: 151 ALAAAISCASLALANAGIEMLDMVAASSIAYFGESMLCLD-VSLKEEMVQDGAMLV---S 206
Query: 175 ILSVLPEGSSLVQ 187
+ L E + L+Q
Sbjct: 207 YMPSLNEVTHLIQ 219
>gi|58266526|ref|XP_570419.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110532|ref|XP_776093.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258761|gb|EAL21446.1| hypothetical protein CNBD1410 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226652|gb|AAW43112.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 308
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 58/287 (20%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P QLRPL S L RA GSA ++ G VLA+ GP + E P+KA+ EV
Sbjct: 18 RPDGRTPAQLRPLHLSIGELDRADGSARFAFGSNAVLASCSGPIEVRLREELPDKATFEV 77
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ--------VVH------ 110
+P G P + L+ I L +P + +++Q VV+
Sbjct: 78 NHRPLEGVGATPSRALVTTLETIFPPILSLEKHPRSLVQLVVQSLVPSTGRVVYGSVFGA 137
Query: 111 ---------------DDGALLP---------------------CAINAACAALVDAG-IP 133
DD A +P +INA+ AL+ AG I
Sbjct: 138 EGVGAEQNTWPATDKDDYAYIPESRKDAARISPAAGYTFTARAASINASTLALLSAGTIS 197
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMK---GFAYLVFPNSILSVLPEGSSLVQGEP 190
+ L VA+ G +LDP EE++ K GF + ++ E +++
Sbjct: 198 ILALPVAVALVVTTKGRVMLDPEADEEKQAKARLGFGWAW--GAVFGTANEENNMGVAGQ 255
Query: 191 MEHG--IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ G ++ + G+ + ++ L+ + AS + +F+R L + L
Sbjct: 256 NDGGAELVWIESEGSFTRQEWSEALQMSKTASKAILEFIRIQLDAHL 302
>gi|406865017|gb|EKD18060.1| 3' exoribonuclease family protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 257
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 109/240 (45%), Gaps = 31/240 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENP-EKA 60
R DGR N+LR L A GS+ G+TKV+ V GP KAGT + ++A
Sbjct: 14 RLDGRRWNELRRLTAQMRTQAAADGSSYLEMGNTKVICTVAGPSEGKAGTGQMGGARDRA 73
Query: 61 SIEVIWK--------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVV 109
+++V + G G+ +K E + + + + P+++ ++ + ++
Sbjct: 74 TVDVTISVAGFSGVDRKRGGAGRGDKRLAEMQTTISTAFAQTLLTHLYPHSSIALSLHIL 133
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYC--------ILDPTKLE 159
DG+LL INA+ ALVDAGIPM+ IC C+A S Y +LD E
Sbjct: 134 SQDGSLLAACINASTLALVDAGIPMRGY---ICACTAGSTSSYSSNDERADPLLDLNAAE 190
Query: 160 EQKMKGFAYLVFPNS-ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA 218
EQ++ S +SVL + VQ +E G++T G M V + + R R
Sbjct: 191 EQELPFLTVATVAGSDDVSVLVM-ETRVQAGRLE-GMLTVGVSGCMQVREILDKVVRERG 248
>gi|407919986|gb|EKG13205.1| Exoribonuclease phosphorolytic domain 1 [Macrophomina phaseolina
MS6]
Length = 256
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 23/181 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-------ENP 57
R DGR N+LR L S A GS+ G+TKV+ V GP G ++ +
Sbjct: 14 RLDGRRWNELRRLQAQISTQAAADGSSYLEMGNTKVMCTVTGPYEGRRQGGAAGAQRDGE 73
Query: 58 EKASIEVIWKPRTG-------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
K +E+ + +G + K E + L + S P++T S+ + ++
Sbjct: 74 AKIEVEIGFAGFSGIERKRRGRGDKRTAEMQHTLVQAFASTLHTQRYPHSTISISLHILS 133
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQK 162
DG+LL +NAA ALVDAGIPM VA C + + Y +LD LEEQ+
Sbjct: 134 QDGSLLAACLNAATLALVDAGIPMSDYLVA-CTAGSTASYSANDEQADPLLDLNNLEEQE 192
Query: 163 M 163
+
Sbjct: 193 L 193
>gi|388499452|gb|AFK37792.1| unknown [Lotus japonicus]
Length = 253
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 32 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G K+Y +L + L IL P TT V V+ G+ LP
Sbjct: 92 NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L +V++ C S ++DP EE G
Sbjct: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN---LVIDPISEEENCQDG 196
>gi|448529118|ref|XP_003869792.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis Co 90-125]
gi|380354146|emb|CCG23659.1| hypothetical protein CORT_0E00700 [Candida orthopsilosis]
Length = 244
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + GS+ QG+TKV+ V GP + ++ N +KA++
Sbjct: 13 RIDGRRWNELRRFECRINTHPSSSDGSSYVEQGNTKVICTVQGPIEPSSRAQMNQDKANL 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + K E L+RT + +L + P T ++ +QV+ DG
Sbjct: 73 EVNLTIANFSTFERKKRSKSEKRMVELRTTLERTFEQSILLHLYPRTNITINVQVLSQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+L N+ A++DAGI M ++ C + +LD LEE
Sbjct: 133 GMLAAITNSITLAIIDAGIAMYDYVSSVSCGLFDQS-PLLDLNNLEE 178
>gi|389748013|gb|EIM89191.1| hypothetical protein STEHIDRAFT_76109 [Stereum hirsutum FP-91666
SS1]
Length = 302
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M R DGR N+ RPL+ L R GSA + G TK LA+V GP +E+P K+
Sbjct: 1 MAQRRHDGRALNESRPLSIVYEGLDRVDGSARFGFGPTKALASVSGPIEVRLASEHPSKS 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH---------- 110
+ EV +P + K ++ L ILT NP T +++Q V
Sbjct: 61 TFEVHLRPLSSLPSVESKSLASSIRALLSPSLILTRNPRTLIQLVVQAVSPLGDSASGSG 120
Query: 111 -----------DDGALLPCAINAACAALVDAG-IPMKHLAVAICCCSAE-SGYCILDPTK 157
+ + +NA AALV AG +PM+ + AI + SG ++DP++
Sbjct: 121 SGRGGGRGRGRMGSSGVAACVNAGTAALVSAGSVPMRGVVCAIAVGRLKASGLLVVDPSE 180
Query: 158 LEEQKMKGFAYLVFPNS 174
EE G +F +S
Sbjct: 181 DEELDATGCFAFMFADS 197
>gi|48477466|ref|YP_023172.1| exosome complex exonuclease Rrp41 [Picrophilus torridus DSM 9790]
gi|48430114|gb|AAT42979.1| ribonuclease PH [Picrophilus torridus DSM 9790]
Length = 239
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 23/172 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA---- 60
R DGR N++RP+ + ++ A GSA G K++ AVY +A K +N +KA
Sbjct: 13 RLDGRAFNEMRPIRITTGVVDNADGSAYIEWGANKIVVAVYVREAYPKHAQNIDKAIVKA 72
Query: 61 -------SIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
S+E +P RT +I K ++ L+S ++ P V I+V+
Sbjct: 73 RYNMAGFSVEERKRPGPDRRTMEISK-------LISEALESAIMVERLPRAEIDVYIEVL 125
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
D ++ AA A+ DAGIPMK L V C +G +LD +K E+
Sbjct: 126 EADAGTRIASLTAASVAVADAGIPMKDLPVG-CTAGKANGKVVLDLSKDEDN 176
>gi|406606222|emb|CCH42404.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 221
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 20/229 (8%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
L +IL+R GSAS G+TKV+++V GP + E P +++EVI + G
Sbjct: 3 LESETTILNRVDGSASLDAGETKVISSVSGPIEPKARQELPTTSALEVIIRADIGVSNTR 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD------DGALLPCAINAACAALVDA 130
EK E L+ L + I + P + QV+ L +N++ AL+DA
Sbjct: 63 EKLLEDKLRAILSQVIIGHLFPRQLIQITSQVLESGEDREYTSKELSAIVNSSYLALIDA 122
Query: 131 GIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEP 190
I + A ESG I PTK + + K +V+ ++ GEP
Sbjct: 123 NIGLSVSFAAQDIAITESGELIAGPTKEQLRSSKSSHVVVY------------AIENGEP 170
Query: 191 MEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
I+ S + G + D+ + L + + K+ R++LQ K+ D
Sbjct: 171 --SNILFSDSIGTFTEDEVYRVLAIAKQHTGKVHQKFRKTLQEKVEKDF 217
>gi|367005682|ref|XP_003687573.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
gi|357525877|emb|CCE65139.1| hypothetical protein TPHA_0J03200 [Tetrapisispora phaffii CBS 4417]
Length = 246
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N++R CS + H A GS+ QG+ K++ V GPK + +++ N KA++
Sbjct: 13 RLDGRRWNEVRRFECSINTHAHAADGSSYLEQGNNKIITLVKGPKEPSLRSQANSLKATM 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+V R+ K E+ E + L RT + +L + P T S+ + ++ D
Sbjct: 73 DVSVNITRFSKFERSAISHKNERRVLEIQTALLRTFEKNIMLHLYPRTQISIQVHILQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G + IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGMFASLINGITLALIDAGIAMYDYVSGISIGLFDTT-PLLDVNTLEENAM 182
>gi|302801728|ref|XP_002982620.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
gi|300149719|gb|EFJ16373.1| hypothetical protein SELMODRAFT_155148 [Selaginella moellendorffii]
Length = 242
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR P ++R L ++ A+GSA + G+TKV+AAVYGP + + + ++A +
Sbjct: 10 RLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVR 69
Query: 64 VIWKPRTGQIGKP---------EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ G E +++++TL++ + + P + + +QV+ DG
Sbjct: 70 CEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL +AGIPM+ L VA C +G +LD +E+
Sbjct: 130 TRSACINAAALALAEAGIPMRDL-VASCAAGYLNGTPLLDLNYVED 174
>gi|302798759|ref|XP_002981139.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
gi|300151193|gb|EFJ17840.1| hypothetical protein SELMODRAFT_233636 [Selaginella moellendorffii]
Length = 264
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR P ++R L ++ A+GSA + G+TKV+AAVYGP + + + ++A +
Sbjct: 10 RLDGRRPLEMRQLHAELGVVENANGSAMFEMGNTKVIAAVYGPHEVHNRSQQLWDRALVR 69
Query: 64 VIWKPRTGQIGKP---------EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ G E +++++TL++ + + P + + +QV+ DG
Sbjct: 70 CEYSMAAFSTGDRRRKGKGNRRSTEISLVIRQTLEAAILTNLMPKSQIDIYVQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL +AGIPM+ L VA C +G +LD +E+
Sbjct: 130 TRSACINAAALALAEAGIPMRDL-VASCAAGYLNGTPLLDLNYVED 174
>gi|430813508|emb|CCJ29143.1| unnamed protein product [Pneumocystis jirovecii]
Length = 250
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 101/216 (46%), Gaps = 16/216 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYG---PKAGTKKNENPEKAS 61
R DGR N+LR I + A GS+ QG+TKV+ V+G P +K + + E+ +
Sbjct: 12 RIDGRRWNELRHFTAKVDIDNFADGSSYVEQGNTKVICMVHGPIEPNTKSKVSLDRERIT 71
Query: 62 IEV-------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
I++ + + + + K +EY +++ + ++P + ++ IQV+ DG
Sbjct: 72 IDISIAAFSSVERKKRTKSDKRIQEYVACIQKVFEKAIQTGLHPRSEINICIQVLAQDGG 131
Query: 115 L----LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
+ L INA AL++AGIPM A S ++ +LD +EE + + +
Sbjct: 132 MFNRILQTCINAVSLALINAGIPMYDYVSASTVGSTDTD-PLLDLNAVEENSISWYTVAI 190
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 206
S +L + + + E EH +++ HG +
Sbjct: 191 LGKSEDIILLQTETRIHMEKFEH-MLSLALHGCQQI 225
>gi|118487722|gb|ABK95685.1| unknown [Populus trichocarpa]
Length = 257
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR+ Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 35 RPDGRDFQQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 94
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P G +G KE+ +L + L+ +L P TT V V+ G+ LP
Sbjct: 95 NVSCTTFATPARG-LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPV 153
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLV------ 170
I+ A AL DAGI M L V++ C I+DP LEE+ + + ++
Sbjct: 154 VISCASLALADAGIMMYDLVAGVSVSCLGRN---LIIDPI-LEEESFQDGSLMITCMPSR 209
Query: 171 FPNSILSVLPEGSSLVQGEPME 192
+ + LS+ E S+ E M+
Sbjct: 210 YEVTQLSITGEWSTAKLNEAMQ 231
>gi|393241477|gb|EJD48999.1| exosome component 4, partial [Auricularia delicata TFB-10046 SS5]
Length = 268
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 84/180 (46%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R+DGR ++LR L + A GSA S G T LA V+GP+ G ++ ++A I+
Sbjct: 12 RSDGRRQHELRSLGMQLATQGAADGSALVSHGLTTALAVVHGPREGRLRSLTLHDRAVID 71
Query: 64 V--IWKPRT-GQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V I P + G+ K K E +K T + + P + + I V+H DG
Sbjct: 72 VTVIVAPFSQGERRKRTKGDRRTQELAAAVKATFEPAVQTHLYPRSQIDICIHVLHQDGG 131
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
+L INA AL++AG+PM A+ S +LD T LEE + V P S
Sbjct: 132 VLQACINATTLALMNAGVPMYDYVCAV-STGVFSTSALLDLTSLEETDVPHLTVGVLPRS 190
>gi|115474519|ref|NP_001060856.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|50725627|dbj|BAD33094.1| putative ribonuclease PH [Oryza sativa Japonica Group]
gi|113622825|dbj|BAF22770.1| Os08g0116800 [Oryza sativa Japonica Group]
gi|125559948|gb|EAZ05396.1| hypothetical protein OsI_27604 [Oryza sativa Indica Group]
gi|125601990|gb|EAZ41315.1| hypothetical protein OsJ_25825 [Oryza sativa Japonica Group]
gi|215686578|dbj|BAG88831.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 262
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 95/236 (40%), Gaps = 29/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
RADGR+ + RP A GSA G TKV+ +V+GP+ K +
Sbjct: 41 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 100
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 101 NVSYTTFATPIRGQ-GMDNKEYSAMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 159
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
I+ A AL DAGI + L +V++ C I+DPT EE
Sbjct: 160 IISCASLALADAGIMIYDLVTSVSVSCFGKN---IIIDPTSDEE---------------- 200
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS +V P I G S + +E A +KL D LR L+
Sbjct: 201 -AWQDGSIMVAYMPARKEITQLTLTGEWSDGKITNAVELCMDACSKLCDILRERLK 255
>gi|156398683|ref|XP_001638317.1| predicted protein [Nematostella vectensis]
gi|156225437|gb|EDO46254.1| predicted protein [Nematostella vectensis]
Length = 268
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 11/164 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P++LRP+ ++ +A GSA +TKV+ A+YGP+ ++ E K
Sbjct: 36 RQDGRRPDELRPMFLRAGVVSQAKGSAYIEMKNTKVICAIYGPREAPRRQEFSMKGRLTC 95
Query: 60 ----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
A I++ + Q + EKE ++ + L+ L P + I V+ +DG+
Sbjct: 96 EFKFAPFSCIYRRKHIQDAE-EKENSYLVVQALEPAVCLEKFPKAQVDIYITVLENDGSA 154
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
L I A AL AGI M L V+ C + ++DP + E
Sbjct: 155 LSAGIICASVALAMAGIEMLDL-VSACTMVQSDNHILMDPCEKE 197
>gi|403418005|emb|CCM04705.1| predicted protein [Fibroporia radiculosa]
Length = 280
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 15/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK---AS 61
R+DGR +LR + S A GSA + G T+VLA V+GP+ +++ +
Sbjct: 28 RSDGRRQYELRDITIDLSQQGTADGSALMTHGLTQVLATVFGPREARVRSQTLHDRAVIN 87
Query: 62 IEVIWKP-RTGQIGKPEKEYEIIL------KRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+EV P TG+ + + +L K T + + + P + + + V+ DG
Sbjct: 88 VEVNVSPFSTGERRRRGRADRRVLELAATIKSTFEPVVQTNLYPRSQIDIFLHVLQQDGG 147
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCS--AESGYCILDPTKLEEQKMKGFAYLVFP 172
LL INA ALV AGIP+ +C S S +LD T LEE + + P
Sbjct: 148 LLHACINATTLALVTAGIPLLDF---VCAVSGGVHSTSPMLDLTTLEENDLPNLTVAIMP 204
Query: 173 NS 174
+
Sbjct: 205 KT 206
>gi|284794093|pdb|3KRN|A Chain A, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
gi|284794094|pdb|3KRN|B Chain B, Crystal Structure Of C. Elegans Cell-Death-Related
Nuclease 5(Crn-5)
Length = 222
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP + E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I+ TL + L + P+TT SV + + DDG++ AIN AC AL+D
Sbjct: 63 ----DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + + + I+DPT +E G
Sbjct: 119 NGMPFETVFCGVLIVRVKDEL-IIDPTAKQEAASTG 153
>gi|62858563|ref|NP_001017016.1| exosome complex component MTR3 [Xenopus (Silurana) tropicalis]
gi|123892820|sp|Q28F19.1|EXOS6_XENTR RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|89269970|emb|CAJ81566.1| exosome component 6 [Xenopus (Silurana) tropicalis]
gi|134024282|gb|AAI36081.1| rarg protein [Xenopus (Silurana) tropicalis]
Length = 270
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSA--SWSQGDTKVLAAVYGPKA---GTKKNENPEKASI 62
GR P++ RP+ +L +A GSA G TKVL AV+GP+ G ++ E +
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 63 EVIWKP--RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ W P R G G ++ + L+ +L+ L P V + V+ D G+
Sbjct: 94 DLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGS 153
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LP A++ A AL DAGI M LA+ G +LDP EE+ G + S
Sbjct: 154 ALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSL---S 210
Query: 175 ILSVLPEGSSLV 186
+L L + S L+
Sbjct: 211 LLPTLNQVSGLI 222
>gi|407464319|ref|YP_006775201.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
gi|407047507|gb|AFS82259.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus sp. AR2]
Length = 244
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++ R + L A GSA GD K+L V+GP+ K N + +
Sbjct: 17 RCDGRKVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + +G+ +E EI ++K L+ +L P T V I+V+ DG
Sbjct: 77 VRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
A+ AA AL DAGIPM+ + AI + ILD E+Q
Sbjct: 137 RCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTVILDVNNEEDQ 181
>gi|52549528|gb|AAU83377.1| ribonuclease PH [uncultured archaeon GZfos27G5]
Length = 247
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 21/197 (10%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKA 60
E R+DGR ++LRP+ +L RA GS G+ KV+AAVYGP+ ++ ++ + A
Sbjct: 10 EGKRSDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMA 69
Query: 61 SIEVIW---------KPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQV 108
I+ + + R G P++ E + + + + + P V +++
Sbjct: 70 VIKFRYNMAPFSTDDRKRPG----PDRRSVEISKVCREAFDPVIMRELYPKMGIEVYVEL 125
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG--- 165
+ D INAA AL DAGIPMK L +I +G +LD E+ +
Sbjct: 126 LQSDAGTRTAGINAASIALADAGIPMKDLVSSIAVGKI-NGEVVLDLNAAEDNNGEADMP 184
Query: 166 FAYLVFPNSILSVLPEG 182
A + N+I ++ +G
Sbjct: 185 IAMIARTNTITALQMDG 201
>gi|17531759|ref|NP_496284.1| Protein CRN-5 [Caenorhabditis elegans]
gi|3874232|emb|CAA90109.1| Protein CRN-5 [Caenorhabditis elegans]
gi|31747259|gb|AAP57301.1| cell death-related nuclease 5 [Caenorhabditis elegans]
Length = 214
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP + E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I+ TL + L + P+TT SV + + DDG++ AIN AC AL+D
Sbjct: 63 ----DNKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + + + I+DPT +E G
Sbjct: 119 NGMPFETVFCGVLIVRVKDEL-IIDPTAKQEAASTG 153
>gi|407461957|ref|YP_006773274.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
gi|407045579|gb|AFS80332.1| exosome complex exonuclease 1 [Candidatus Nitrosopumilus koreensis
AR1]
Length = 244
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++ R + L A GSA GD K+L V+GP+ K N + +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSAYIEFGDNKILVGVFGPRDVHPKHMSNTDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + +G+ +E EI ++K L+ +L P T V I+V+ DG
Sbjct: 77 VRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLDKFPRTAVDVFIEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
A+ AA AL DAGIPM+ + AI + ILD E+Q
Sbjct: 137 RCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTVILDVNNEEDQ 181
>gi|380488106|emb|CCF37603.1| 3' exoribonuclease [Colletotrichum higginsianum]
Length = 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------AGTKK 53
M + R DGR N+LR L A GS+ G TKV+ V GP AG +
Sbjct: 10 MALLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQS 69
Query: 54 NE-----NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
E N A + + + G+ K +E E + + + + + P+++ S+ + V
Sbjct: 70 KEAAVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHV 129
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEE 160
+ DG+LL +NA+ AL+DAGIPM +A C + S Y +LD EE
Sbjct: 130 LSQDGSLLAALLNASTLALIDAGIPMTDY-IAACTAGSTSTYAAADDGADPLLDLNTQEE 188
Query: 161 QKM 163
Q++
Sbjct: 189 QEL 191
>gi|302882007|ref|XP_003039914.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
gi|256720781|gb|EEU34201.1| hypothetical protein NECHADRAFT_96576 [Nectria haematococca mpVI
77-13-4]
Length = 268
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 23/181 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R DGR N+LR L A GS+ G TKV+ V GP ++
Sbjct: 14 RVDGRRWNELRRLNAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQGQQQRRVQTAQRDV 73
Query: 54 ---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
N N A + + + G+ K +E E+ + S + P+++ ++ + V+
Sbjct: 74 AAINVNVVTAGFSSVDRKKRGRNDKRTQEIEVTIANAFASNLHTHLFPHSSITISLHVLS 133
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQK 162
DG+LL +NA AL+DAGIPM +A C + S Y +LD EEQ+
Sbjct: 134 QDGSLLAALLNATTLALIDAGIPMTDY-IAACTAGSTSTYAAGDDSADPLLDLNNQEEQE 192
Query: 163 M 163
+
Sbjct: 193 L 193
>gi|310798773|gb|EFQ33666.1| 3' exoribonuclease family protein [Glomerella graminicola M1.001]
Length = 266
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------AGTKK 53
M + R DGR N+LR L A GS+ G TKV+ V GP AG +
Sbjct: 10 MALLRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPTEPQRRGGAGGQT 69
Query: 54 NE-----NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
E N A + + + G+ K +E E + + + + + P+++ S+ + V
Sbjct: 70 KEAAVTVNLVVAGFSSVDRRKRGRNDKRTQELEATIAKAVSANLHTHLFPHSSISISLHV 129
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEE 160
+ DG+LL +NA+ AL+DAGIPM +A C + S Y +LD EE
Sbjct: 130 LSQDGSLLAALLNASTLALIDAGIPMTDY-IAACTAGSTSTYAAADDGADPLLDLNTQEE 188
Query: 161 QKM 163
Q++
Sbjct: 189 QEL 191
>gi|350423078|ref|XP_003493378.1| PREDICTED: exosome complex component MTR3-like [Bombus impatiens]
Length = 273
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI- 62
+R+D R N++R + I+ +A GSA G+TKV+ +V+ P+ + KN + I
Sbjct: 36 ERSDKRTNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPREVSNKNGYCAQGEIY 95
Query: 63 -EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
E + P + Q EK+Y +IL+R L+ L PN V + V+ + G+
Sbjct: 96 CEFKFAPFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYVMVLDNAGSS 155
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
L AI AA AL +AG+PM L A ++ Y ++DPT +EE
Sbjct: 156 LAAAIMAASTALANAGVPMFGLVTASTIGIYDNHY-LMDPTDIEE 199
>gi|224106782|ref|XP_002314284.1| predicted protein [Populus trichocarpa]
gi|222850692|gb|EEE88239.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 19/202 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 94
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P G +G KE+ +L + L+ +L P TT V V+ G+ LP
Sbjct: 95 NVSCTTFATPARG-LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPV 153
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLV------ 170
I+ A AL DAGI M L V++ C I+DP LEE+ + + ++
Sbjct: 154 VISCASLALADAGIMMYDLVAGVSVSCLGRN---LIIDPI-LEEESFQDGSLMITCMPSR 209
Query: 171 FPNSILSVLPEGSSLVQGEPME 192
+ + LS+ E S+ E M+
Sbjct: 210 YEVTQLSITGEWSTAKLNEAMQ 231
>gi|341888955|gb|EGT44890.1| hypothetical protein CAEBREN_12233 [Caenorhabditis brenneri]
Length = 214
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
++R + C S L A GSA +SQG T V A+ GP N E ++++ ++ G
Sbjct: 4 RIREMRCELSFLKNADGSACFSQGSTCVWASCSGPGDVHASRANEEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I++ T+ L + P+T +V I + DDG++ AIN+AC AL+D
Sbjct: 63 ----DNKFNVLNNIIQSTMSKAINLELFPHTAITVTIHGIQDDGSMGAAAINSACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + I + I+DPT +E G
Sbjct: 119 NGMPFETVFCGIQIVRVKDEL-IIDPTAKQEAASTG 153
>gi|346322418|gb|EGX92017.1| ribosomal protein S5 domain 2-type fold domain containing protein
[Cordyceps militaris CM01]
Length = 252
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 31/242 (12%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L +A GSA++S V +AV GP +++ENP +A I+V +P G G E+ E I
Sbjct: 14 LPKADGSATYSYNGYTVTSAVNGPIEAQRRDENPFEAIIDVNIRPAAGVGGTAERVLESI 73
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAALV 128
L+R L+ + + P + + +QV + A++P ++AA +L+
Sbjct: 74 LQRALRQLIPIRNFPRSMIQITLQVTETPENAYANTKVVQAQLNLAIIPVLLHAAILSLL 133
Query: 129 DAGIPMKHLAVAICCC--SAESGYCILDPTKLEEQKMKGFAYLVFP--NSILSVLPEGSS 184
IP+K +A A+ A+ G + DP+ E + L F + +L +G+
Sbjct: 134 TGAIPLKTIATAVTLAVRGADGGGIVADPSAREADTARSLHVLGFTADDELLLAESQGTF 193
Query: 185 LVQGEPMEHGIITSVTHGA------MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
V E + + A +D+ + G AAS + F+R +++K+ D
Sbjct: 194 TVD----EWAAVLAAGQEACGRAAPQGIDEDAAMADGGEAASVRA--FIRSVMETKIAAD 247
Query: 239 LS 240
+S
Sbjct: 248 MS 249
>gi|254585869|ref|XP_002498502.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
gi|238941396|emb|CAR29569.1| ZYRO0G11814p [Zygosaccharomyces rouxii]
Length = 245
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + H A GS+ QG+ K++ V GPK + +++ +P KA +
Sbjct: 13 RVDGRRWNELRRFDCSINTHSHAADGSSYLEQGNNKIITLVKGPKEPSLRSQMDPTKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+V I K R+ K E+ E + L RT +L I P T + I V+ D
Sbjct: 73 KVSVNITKFSKTERSKTSHKNERRVLEIQTALTRTFNKNVMLHIYPRTLIDIEIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G L+ IN AL+DAGI M + ++ +L+ LEE M
Sbjct: 133 GGLVGTLINGITLALIDAGIAMFDYISGVSVGLYDT-TPLLEVNSLEENVM 182
>gi|322703951|gb|EFY95552.1| exosome complex exonuclease RRP41 [Metarhizium anisopliae ARSEF 23]
Length = 273
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 28/186 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE--------- 55
R DGR N+LR L A GS+ + G TKV+ V GP +
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQAQAQRRGGQA 73
Query: 56 -NPEKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
+ ASI V + + + + K +E EI + + L S + P+++ +V
Sbjct: 74 PGRDAASIIVNVVIAGFSSVDRKKRARSDKRTQEIEITIAKALSSTVHTHLFPHSSITVS 133
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTK 157
+ V+ DG+LL INAA A++DAGIPM +A C + S Y +LD
Sbjct: 134 LHVLSQDGSLLAALINAATLAVIDAGIPMTDY-IAACTAGSTSSYAAGDDSADPLLDLNN 192
Query: 158 LEEQKM 163
EEQ++
Sbjct: 193 QEEQEL 198
>gi|345565548|gb|EGX48497.1| hypothetical protein AOL_s00080g126 [Arthrobotrys oligospora ATCC
24927]
Length = 246
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 14/165 (8%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK 59
ME R DGR N+LR + C S A GS+ QG TKVL V GP + + + +
Sbjct: 1 MEGLRNDGRRWNELRRIHCQLSTSSTNADGSSYIEQGFTKVLCNVTGPAEPSSRQKVKQD 60
Query: 60 ASI---EVIW-------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
A+ EV + + + G+ K +E + +++T S+ + + + ++ I ++
Sbjct: 61 AATVTCEVYFAAFSGTDRIKRGRNDKKVQELQTAIQKTFASVILTHLFSRSEITISIHIL 120
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
DG L INA AL+DAGIP+K +C C++ I D
Sbjct: 121 SQDGGTLAACINATTLALIDAGIPLKDY---VCACTSGQSTSIFD 162
>gi|417396273|gb|JAA45170.1| Putative exosome complex component rrp46-like protein [Desmodus
rotundus]
Length = 151
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 58/98 (59%), Gaps = 1/98 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT +LA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSILAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
P+ G G EK E +++ T +++ + ++P T+ +V+
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGVLHPRTSITVV 119
>gi|395323371|gb|EJF55845.1| hypothetical protein DICSQDRAFT_150740 [Dichomitus squalens
LYAD-421 SS1]
Length = 264
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R+DGR +LR + + A GSA + G T+VL V+GP+ +++ ++
Sbjct: 14 RSDGRKQYELRDITIDLTQQGTADGSAQLTHGLTQVLVTVFGPREAKMRSQTLHDRAVLN 73
Query: 63 -EVIWKP-RTGQIGKPEKEYEIILK------RTLQSICILTINPNTTTSVIIQVVHDDGA 114
E+ P TG+ K + IL+ T + + + P + + + V+ DG+
Sbjct: 74 VEMSVAPFSTGERRKRSRADRRILEMAAMIASTFEPVVQTNLYPRSQIDIYVHVLQQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LLP INA ALV AG+P+ A+ S +LD T LEE + V P +
Sbjct: 134 LLPACINATTLALVTAGVPLLDFVCAV-TGGVHSTSPLLDLTTLEENDVPHMTVAVMPRT 192
>gi|367001256|ref|XP_003685363.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
gi|357523661|emb|CCE62929.1| hypothetical protein TPHA_0D02930 [Tetrapisispora phaffii CBS 4417]
Length = 222
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 96/226 (42%), Gaps = 19/226 (8%)
Query: 21 CSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY 80
C +L GS+ DTKVL +V GP + E P + ++EVI +P G EK
Sbjct: 7 CGVLTHVDGSSQVEWNDTKVLCSVTGPIEPKARQELPSQLALEVIIRPAKGVSSTREKLM 66
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGA-------LLPCAINAACAALVDAGIP 133
E L+ L I L P + Q++ + L C INAA AL+DAGI
Sbjct: 67 EDKLRSVLTPIITLYQYPRQLCQITCQILESGESEYEFSEKELSCCINAAFLALIDAGIA 126
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
+K +I +++ I++PT + + L L++ + +
Sbjct: 127 LKSTVSSISLVISQNNEVIVNPTGAQLLNSRSVHILAL------------ELIKEMNIVN 174
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++ ++G + + F LE G + L LR+ +Q+ + ++
Sbjct: 175 NVLLLDSNGDFNEKELFQVLETGEKSCLALGQDLRKVIQNNVDSNI 220
>gi|42567185|ref|NP_194479.2| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
gi|124300968|gb|ABN04736.1| At4g27490 [Arabidopsis thaliana]
gi|124301080|gb|ABN04792.1| At4g27490 [Arabidopsis thaliana]
gi|332659949|gb|AEE85349.1| 3'-5'-exoribonuclease family protein [Arabidopsis thaliana]
Length = 256
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/240 (26%), Positives = 99/240 (41%), Gaps = 29/240 (12%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-- 58
++ R DGR +Q RP + A GSA G+TKV+ +V+GP+ K +
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89
Query: 59 ----KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
S P GQ G KEY +L + L+ + ++ P TT V V+ G+
Sbjct: 90 RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 148
Query: 115 LLPCAINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
L I+ A AL DAGI M L AV++ C ++DP EE
Sbjct: 149 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKS---LMIDPVTEEEG----------- 194
Query: 173 NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS ++ P + I G + + ++ AS+KL + +R L+
Sbjct: 195 ------CEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRDCLK 248
>gi|118489169|gb|ABK96391.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 257
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNSAAGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNC 94
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P G +G KE+ +L + L+ +L P TT V V+ G+ LP
Sbjct: 95 NVSCTTFATPARG-LGSDNKEFSSMLHKALEGAIMLETFPKTTVDVFALVLESGGSDLPV 153
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L V++ C I+DP EE G
Sbjct: 154 VISCASLALADAGIMMYDLVAGVSVSCLGRN---LIIDPILEEESFQDG 199
>gi|453086483|gb|EMF14525.1| ribosomal protein S5 domain 2-like protein [Mycosphaerella
populorum SO2202]
Length = 371
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-----ENPEK 59
R DGR N+LR ++ S A GS+ + G+TKV+ V GP+ T+ + ++
Sbjct: 131 RVDGRRWNELRCISGQMSTQAAADGSSYFEMGNTKVICTVVGPRQQTRSGGGGGRDQTKE 190
Query: 60 ASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
ASIEV + + + + K +E + + S ++ P +T S+++ V+
Sbjct: 191 ASIEVEIGIAGFSGMDRKKRSRSDKRTQEMQYTISSAFASTVFTSLYPQSTISIVLHVLS 250
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQK 162
DGALL +NAA AL+DAG+PMK VA C + + Y +LD LEEQ+
Sbjct: 251 QDGALLAACLNAATLALIDAGVPMKDY-VAACTVGSTASYASNEEEADPLLDLNGLEEQE 309
Query: 163 M 163
+
Sbjct: 310 L 310
>gi|71018287|ref|XP_759374.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
gi|46099099|gb|EAK84332.1| hypothetical protein UM03227.1 [Ustilago maydis 521]
Length = 273
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKAS 61
R DGR +LR + S A G A +QG T V A V+GP+ A + N ++AS
Sbjct: 13 RIDGRKQFELRSIGIQLGGSQDTAADGCAQITQGLTIVSATVFGPREARSGANVMHDRAS 72
Query: 62 IEVIWKPRTGQIGKPEK-----------EYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ V + G E+ E+ +K T + + + P + + +QV
Sbjct: 73 VNV--EVSVAPWGSMERRRRNRGDRRLVEFANSIKSTFEPVIHTHLYPRSQIDIFVQVHQ 130
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
DG +LP AINA+ AL+DAGI M+ VA C S +LD + EEQ + V
Sbjct: 131 QDGGVLPAAINASTLALLDAGIAMQDF-VASVSCGIHSTSAMLDLSNTEEQDLPHVTVAV 189
Query: 171 FPNS 174
P +
Sbjct: 190 LPRT 193
>gi|170103316|ref|XP_001882873.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642244|gb|EDR06501.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 247
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/225 (30%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 14 LRPLACSCSILHRAHGSASWSQG-DTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+R L S L R GSA + G +T LA++ GP E P +A+ EV +P +
Sbjct: 1 MRSLHLSYEHLARTDGSARFGFGPNTHALASLSGPIEVRLAAELPSQATFEVHVRPLSNV 60
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV---HDDGALLPCAINAACAALVD 129
K I+K L IL+ NP T +++Q + D ++ INAA A ++
Sbjct: 61 PATEAKALASIVKSALSPSLILSRNPRTLVQLVVQALSPSRDGSGMVAAMINAATLAFLN 120
Query: 130 AG-IPMKHLAVAICCCSAESGYCILDPTKLE-EQKMKG-FAYLVFPNSILSVLPEGSSLV 186
AG IPMK + A+ G ++DP++ E E + G FA+LV N L +S V
Sbjct: 121 AGSIPMKGIICAMPVGRRVGGELVVDPSEEEVEVEATGCFAFLVTQN--LGHQEMTASCV 178
Query: 187 QGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
E G+ G+ +DD E + A+ ++D +R SL
Sbjct: 179 HTSWKEGGV------GSSGLDDLVRATELAKGAALVIADEMRESL 217
>gi|449456022|ref|XP_004145749.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
gi|449531263|ref|XP_004172607.1| PREDICTED: exosome complex component MTR3-like [Cucumis sativus]
Length = 258
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 35 RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G K++ +L ++L+ IL P TT V V+ G+ LP
Sbjct: 95 SVSYTTFSTPVRGQ-GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPV 153
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170
I+ A AL DAGI + L +V++ C G +L T LEE+ + + ++
Sbjct: 154 VISCASLALADAGIMLYDLVASVSVSCF----GKNLLIDTVLEEENYQDGSLMI 203
>gi|424819695|ref|ZP_18244762.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
gi|326422491|gb|EGD71888.1| 3' exoribonuclease [Candidatus Parvarchaeum acidophilus
ARMAN-5_'5-way FS']
Length = 236
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 23/244 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK 59
M +R D R N+LRP+ ++ A GSA + G+T+ +AAVYGP+ ++ E ++
Sbjct: 1 MYEERFDKRAFNELRPMEAETGVVPNAKGSARFRIGNTEAIAAVYGPEEVKPRHIEKVDR 60
Query: 60 ASIEVIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHD 111
I + P + G ++ EI ++ L IL P +V + +
Sbjct: 61 GVIVCKYDMLPFSVPDRAKPGMDRRDIEISQVITNALNRAIILEDMPRAMINVRVYITQA 120
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
D ++ AA A DAG+PM+ L A+ C LD +K EE +G
Sbjct: 121 DAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDHVC-LDLSKEEEDFHEGEGATDV 179
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
P + L P ++ I+ G +S D+ +E G+ + K+ + + +L
Sbjct: 180 PIAFL-------------PSKNEILLLQLDGRVSRDELKKVIEVGKEGAMKIYELEKEAL 226
Query: 232 QSKL 235
+ +
Sbjct: 227 KRRF 230
>gi|52550472|gb|AAU84321.1| ribonuclease PH [uncultured archaeon GZfos9D1]
Length = 245
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 84/191 (43%), Gaps = 15/191 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++LRP+ +L RA GS G+ KV+AAVYGP+ ++ K ++ V
Sbjct: 13 RLDGRGFDELRPIKIEVGVLKRADGSCYLELGNNKVIAAVYGPREMHPRHAQDAKMAV-V 71
Query: 65 IWKPRTGQI--------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ G + EI + + + + + P V ++++ D
Sbjct: 72 KFRYNMAPFSTDDRKRPGPDRRSVEISKVCREAFDPVIMRELYPKMGIDVYVELLQSDAG 131
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVF 171
INAA AL DAGIPMK L +I G +LD E+ + A +
Sbjct: 132 TRTAGINAASIALADAGIPMKDLVSSIAVGKI-GGEMVLDLNAAEDNNGEADMPIAMIAR 190
Query: 172 PNSILSVLPEG 182
N+I ++ +G
Sbjct: 191 TNTITALQMDG 201
>gi|225719528|gb|ACO15610.1| Exosome complex exonuclease MTR3 [Caligus clemensi]
Length = 274
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 5 RADGR--NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA-- 60
R DG + +RPL C +L + GSA +G TKV+A+V+GP+ KK +
Sbjct: 40 RPDGERDKDSSVRPLFCEVGVLTQCKGSAYIERGRTKVIASVFGPREVNKKLDFSSTTGI 99
Query: 61 -SIEVIWKP--------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
S+E P + +K + L +T +S L + P + + I V+ +
Sbjct: 100 LSVEYCETPFSSSSSNRSSKSPSNEDKNISLFLAQTFRSTVCLHLYPKSRIDIFITVLEN 159
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
DG+ +P AI A AL DA I + L + G ++DP K EE+
Sbjct: 160 DGSAIPTAITAGALALSDASINLFDLVIG-ASVKMSLGKALIDPCKAEEE 208
>gi|71410195|ref|XP_807405.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70871397|gb|EAN85554.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 284
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 19/154 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R S L + GSA +SQG T V+AAV GP A + E+ K +++V
Sbjct: 7 RRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA--RQEDYRKCNVQV 64
Query: 65 -----IWKPRTG------------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
+ PR G + + + E E+ L ++Q++ L P V +
Sbjct: 65 YVNRAVRIPRAGGTDRLCVEEQRLEQQRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVT 124
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 141
++ DDGALL A NA AL+DAG+P + A+
Sbjct: 125 ILADDGALLSVATNALMCALLDAGVPCRTTVAAV 158
>gi|154295932|ref|XP_001548399.1| hypothetical protein BC1G_13119 [Botryotinia fuckeliana B05.10]
gi|347441428|emb|CCD34349.1| similar to exosome complex exonuclease RRP41 [Botryotinia
fuckeliana]
Length = 261
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP--------KAGTKKNEN 56
R DGR N+LR L S + GS+ S G+T+VL V GP G N
Sbjct: 14 RLDGRRWNELRRLTAQISTQPSSDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGSNNA 73
Query: 57 PEKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
EKA + V + + + G+ K +E L T + T+ ++T + +
Sbjct: 74 GEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSHSTILISLH 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 148
++ DG+LL INA+ AL+DAGIPM IC C+A S
Sbjct: 134 ILSLDGSLLSALINASTLALIDAGIPMPSY---ICACTAGS 171
>gi|91087143|ref|XP_975288.1| PREDICTED: similar to exosomal 3-5 exoribonuclease complex subunit
Rrp41-like protein [Tribolium castaneum]
Length = 282
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
RADGR + R + ++ +A GSA TKV+ +V+ P+ K + K I
Sbjct: 42 RADGRTSTEHRKIFLKTGVVSQAKGSAYIELDQTKVIVSVFDPREIPNKTDYSSKGEIYC 101
Query: 63 EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P R Q E+++ I+K+ L+S PN + V+H+DGA L
Sbjct: 102 EFKFAPFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFPNFQVDIYAMVLHNDGAAL 161
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
AI AA AL AGIPM L ++ + + + ++DPT LEE+++
Sbjct: 162 SAAITAAGVALAHAGIPMYDLITSV-TLAVQGNHLLVDPT-LEEERL 206
>gi|121710390|ref|XP_001272811.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
gi|119400961|gb|EAW11385.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus clavatus NRRL 1]
Length = 269
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L+ S + GS+ S G+T ++ +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLSAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V K R G + IL+ QS + P++T S+ + V+
Sbjct: 75 AIVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
DG+LL A+NA ALVDAGIPM L A C S SG
Sbjct: 135 SSDGSLLAAAVNACTLALVDAGIPMPGLLSA--CTSGMSG 172
>gi|156845783|ref|XP_001645781.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
gi|156116449|gb|EDO17923.1| hypothetical protein Kpol_1010p39 [Vanderwaltozyma polyspora DSM
70294]
Length = 246
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + H + GS+ QG+ K++ V GP+ +++ + KAS+
Sbjct: 13 RLDGRRWNELRRFECSINTHAHASDGSSYLEQGNNKIVTLVKGPQEPILRSQLDATKASL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ R+ K E+ E + L RT + +L + P T + I V+ D
Sbjct: 73 NITVNITKFSKMERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTLIDIEIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G +L IN+ AL+D+GI M AI ++ +LD LEE M
Sbjct: 133 GGILGSLINSITLALIDSGIAMYDYVSAISIGLYDTT-PLLDVNTLEENAM 182
>gi|255725122|ref|XP_002547490.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135381|gb|EER34935.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 225
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 12/203 (5%)
Query: 21 CSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY 80
SIL A GSA + G TKV+ ++ GP ++ E P ++S+E+I +P TG EK
Sbjct: 10 TSILENADGSAELTIGGTKVITSISGPIEPKQRQELPNQSSLEIIVRPATGLPTTREKLI 69
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL------LPCAINAACAALVDAGIPM 134
E L+ LQS+ I P V++Q + D ++ L AIN+ AL+DA + +
Sbjct: 70 EDKLRSVLQSVIISYKYPRQLIQVVVQFCNTDESVEFNVNELNAAINSCYFALIDADVAL 129
Query: 135 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLV--QGEPME 192
+ + A S SG I +PT + F + F +I + ++ QGE E
Sbjct: 130 -YSSFASVVISINSGNLIKEPTGDVLETSDSFHLVCF--TIQDAQAKKLLMLESQGEFTE 186
Query: 193 HGIITSVTHGAMSVDDYFHCLER 215
+ T ++ V++ H ++R
Sbjct: 187 QELFTVLSESVHEVEN-LHTIQR 208
>gi|444322810|ref|XP_004182046.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
gi|387515092|emb|CCH62527.1| hypothetical protein TBLA_0H02430 [Tetrapisispora blattae CBS 6284]
Length = 245
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + H + GS+ QG+ KV+ V GP+ K++ + KA++
Sbjct: 13 RQDGRRWNELRRFDCSINTHAHTSDGSSYLEQGNNKVITIVKGPQEPPLKSQLDQTKATL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ R+ K EK E + IL +T + ++ + P T + I V+ D
Sbjct: 73 NISLNITPFSKFERSKTQHKNEKRILELQTILIKTFKKNILMHLYPRTLIDIQIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPM 134
G+LL C IN AL+DAGI +
Sbjct: 133 GSLLSCLINGITLALIDAGIAI 154
>gi|71651570|ref|XP_814460.1| ribosomal RNA processing protein 41B [Trypanosoma cruzi strain CL
Brener]
gi|70879434|gb|EAN92609.1| ribosomal RNA processing protein 41B, putative [Trypanosoma cruzi]
Length = 285
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R S L + GSA +SQG T V+AAV GP A + E+ K ++V
Sbjct: 7 RRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQV 64
Query: 65 -----IWKPRTG------------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
+ PR G + + + E E+ L ++Q++ L P V +
Sbjct: 65 YVNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVT 124
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESG 149
++ DDGALL A NA AL+DAG+P + AV+I + E G
Sbjct: 125 ILADDGALLSVATNALMCALLDAGVPCRTTVAAVSIVALTPEDG 168
>gi|322708621|gb|EFZ00198.1| hypothetical protein MAA_03975 [Metarhizium anisopliae ARSEF 23]
Length = 254
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 35/218 (16%)
Query: 16 PLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK 75
PLA S L A GSA++S V AAV GP +++ENP +A I+V+ +P G G
Sbjct: 7 PLA-QLSNLPNADGSATFSNCGYAVTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGT 65
Query: 76 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVV---------------HDDGALLPCAI 120
E++ E +L+ L+ + + P T V +Q++ + A++P
Sbjct: 66 AERQIESMLQAALRQLIPIRNFPRCTIQVTLQIMEAPENAYQNTKLLQPQQNLAIIPALF 125
Query: 121 NAACAALVDAGIPMKHLAVAICCCS-AESGYCILDPTKLEEQKMKGFAYLVFPNSILSVL 179
+AA L+ A IP+K +A A A SG I+DP+ E K L F + +L
Sbjct: 126 HAAILGLLTAAIPLKTIATATTIAIPAGSGALIIDPSTEESAKATSLHALAFTSHDELLL 185
Query: 180 PEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 217
E S G+ S++D+ LE G+
Sbjct: 186 AESS------------------GSFSIEDWDRVLETGQ 205
>gi|134076396|emb|CAK48214.1| unnamed protein product [Aspergillus niger]
Length = 248
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 18/159 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L S + GS+ + G+T +L +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V K R G K IL+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 148
DG+LL A+NA ALVDAGIPM L +C C+A +
Sbjct: 135 SSDGSLLAAAVNACTLALVDAGIPMPGL---LCGCTAST 170
>gi|190346269|gb|EDK38314.2| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 83/181 (45%), Gaps = 12/181 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + T+ + +A+I
Sbjct: 13 RVDGRRWNELRRFECKINTHPNSSTGSSYVEQGNTKVICMVEGPSEPETRSQVDVSRATI 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV I + + + K E + ++RT + I + P T V + V+ DG
Sbjct: 73 EVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+L INA AL+DAGI M + VA + +LD LEE M V
Sbjct: 133 GMLATMINATTLALIDAGIAM-YDYVAAVAAGLHNETPLLDLNTLEENDMSHLTLGVIGK 191
Query: 174 S 174
S
Sbjct: 192 S 192
>gi|255943151|ref|XP_002562344.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587077|emb|CAP94741.1| Pc18g05170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 265
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 16/155 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR L S + GS+ S G+T ++ +V+GP G + + + V
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGSAGSGHAV 74
Query: 65 I-------------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ K R G + L+ QS + P++T S+ + V+
Sbjct: 75 VEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVLSA 134
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG+LL A+NA ALVDAGIPM L +C C++
Sbjct: 135 DGSLLAAALNACTLALVDAGIPMPGL---LCGCTS 166
>gi|403218498|emb|CCK72988.1| hypothetical protein KNAG_0M01350 [Kazachstania naganishii CBS
8797]
Length = 247
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 79/170 (46%), Gaps = 17/170 (10%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR S S H A GS+ QG+ KV+ V GP + ++ + ++A++
Sbjct: 13 RLDGRRWNELRRFQASISTHAHSADGSSYLEQGNNKVVTLVRGPGEPASRGQLDGQRATL 72
Query: 63 EV---------IWKPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
V + RT + E+ E + L+RT + C+L + P T V + V+
Sbjct: 73 RVSVNVTKFSKFERSRTSH--RNERRVLEIQTSLRRTFEKACLLHLYPRTAIDVELHVLE 130
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DG +L IN ALVDAG+ M VA +LD LEE
Sbjct: 131 QDGGVLGAMINGITLALVDAGVAMWDY-VAGVSVGLHDQTPLLDCNSLEE 179
>gi|255711166|ref|XP_002551866.1| KLTH0B01738p [Lachancea thermotolerans]
gi|238933244|emb|CAR21428.1| KLTH0B01738p [Lachancea thermotolerans CBS 6340]
Length = 245
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRA-HGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR L CS + A GS+ QG+ KV+ V GP+ +++ N KA+I
Sbjct: 13 RVDGRRWNELRRLECSINTHANASDGSSYLEQGNNKVITLVTGPQEPKLRSQMNVTKATI 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V R+ K E+ E + L RT + +L + P T + I V+ D
Sbjct: 73 SVALNITRFSKIERSKSSHKNERRVLEMQTALVRTFEKNVMLHLYPRTQIEIQIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G L+ IN AL+DAGI M + ++ +LD +EE M
Sbjct: 133 GGLMSSLINGITLALIDAGIAMYDYISGVSIGLYDT-TPLLDLNSVEENAM 182
>gi|424814253|ref|ZP_18239431.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
gi|339757869|gb|EGQ43126.1| ribosomal RNA-processing protein RRP41/SKI6 [Candidatus Nanosalina
sp. J07AB43]
Length = 253
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 10/168 (5%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASI 62
+R DGR ++LR +L A GSA G+T+V+A+V+GP+ K+ + ++A I
Sbjct: 14 NRVDGRKADELRETEMEVGVLEEADGSAMVEIGNTRVIASVFGPQDLHPKHLQESDRAVI 73
Query: 63 EVIWKPRTGQI--------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ + + + +E E++ K L+ L P + ++VV DG
Sbjct: 74 KMRYNMAPFSVDDRMSPGPNRRAQEIELVAKNALKPALELERFPTAGIDISMEVVESDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPMK + V+ C +LD E++K
Sbjct: 134 TRVTGITAASLALADAGIPMKGM-VSACAAGVVDDTPVLDVNGKEDKK 180
>gi|452848085|gb|EME50017.1| hypothetical protein DOTSEDRAFT_68766 [Dothistroma septosporum
NZE10]
Length = 240
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L RA GS + G V+AA GP +++E PE+A+IEV +P +G G E+ E +
Sbjct: 10 LERADGSTIFGDGLYTVIAAANGPVEVQRRDELPEEAAIEVNLRPLSGVGGPRERWLENL 69
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHD----------DGALLPCAINAACAALVDAGIP 133
L+ L+ I ++ ++P T V +Q+ D +++P +NAA ALVD +P
Sbjct: 70 LQPLLEKILLVHMHPRTLIQVTLQITKQPTAKFRRSNADISIIPTLVNAAFTALVDGALP 129
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
+ A+ + + G P + + + + F N+I + E SS
Sbjct: 130 LATTVNAVLVTTGKDGKINTTPKEQDIETCASIHAMAF-NTINEQVLEQSS 179
>gi|169778981|ref|XP_001823955.1| exosome complex endonuclease 1 [Aspergillus oryzae RIB40]
gi|238499561|ref|XP_002381015.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|83772694|dbj|BAE62822.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692768|gb|EED49114.1| exosome complex endonuclease 1, putative [Aspergillus flavus
NRRL3357]
gi|391869326|gb|EIT78525.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41 [Aspergillus
oryzae 3.042]
Length = 269
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 74/157 (47%), Gaps = 18/157 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-----PEK 59
R DGR N+LR L S + GS+ + G+T ++ +V+GP G + +
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGAAGSSG 74
Query: 60 ASIEVI----------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
A +EV K R G K L+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRKRRAGGSDKQSSRIATTLRAAFQSHLHTYLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG+LL AINA ALVDAGIPM L +C C+A
Sbjct: 135 SADGSLLAAAINACTLALVDAGIPMPGL---LCGCTA 168
>gi|255720833|ref|XP_002545351.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
gi|240135840|gb|EER35393.1| exosome complex exonuclease RRP41 [Candida tropicalis MYA-3404]
Length = 240
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 12/174 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + + ++ E A+I
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVVCTVQGPIEPQLRSQQHSEHANI 69
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
E+ + + + K E + IL++T ++ + P T + IQV+ DG
Sbjct: 70 EINLTIANFATFERKKRNKNEKRLIELKNILEKTFMESIMINLYPRTNIIINIQVLSQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFA 167
LL N+ AL+D+GI M +I C ++ +LD LEE +
Sbjct: 130 GLLSAITNSITLALIDSGISMYDYVSSINCGLYDTT-PLLDLNNLEENDISNLT 182
>gi|322695534|gb|EFY87340.1| exosome complex exonuclease RRP41 [Metarhizium acridum CQMa 102]
Length = 291
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 46/204 (22%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR N+LR L A GS+ + G TKV+ V GP
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYFEMGHTKVMCVVTGPSEQQQAQVQAQRRGAQA 73
Query: 49 --------------AG------TKKNENPEKASIEVIWKPRTGQ-IGKPEKEYEIILKRT 87
AG K+ N ++ E+ + T + G+ +E EI + +
Sbjct: 74 SGRDAASIIVNVVIAGFSSVDRKKRGRNDKEGGREIEHRALTWRGYGRRTQEIEITIAKA 133
Query: 88 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147
L S + P+++ +V + V+ DG+LL INAA A++DAGIPM +A C +
Sbjct: 134 LSSTVHTHLFPHSSITVSLHVLSQDGSLLAALINAATLAVIDAGIPMTDY-IAACTAGST 192
Query: 148 SGYC--------ILDPTKLEEQKM 163
S Y +LD EEQ++
Sbjct: 193 SSYAAGDDSADPLLDLNNQEEQEL 216
>gi|452844097|gb|EME46031.1| hypothetical protein DOTSEDRAFT_86692 [Dothistroma septosporum
NZE10]
Length = 251
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE--KASI 62
R DGR N+LR + S A GS+ + G+TKV+ V+GP+ + + +A+I
Sbjct: 14 RTDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKVICTVHGPRQARQGGSGGQSREAAI 73
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+V + + R G+ K +E + + S T P++T ++++ V+ DG
Sbjct: 74 DVEIGIAGFSGMDRKRRGKNDKRVQEMQYTISSAFASTVFTTSYPHSTITIVLHVLSQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKG 165
ALL +NAA ALVDAG+PMK A+ S S Y +LD +EEQ++
Sbjct: 134 ALLAACLNAATLALVDAGVPMKDYVAAVTTGSTAS-YASNDEEADPLLDLNGVEEQELPF 192
Query: 166 F 166
F
Sbjct: 193 F 193
>gi|302780062|ref|XP_002971806.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
gi|300160938|gb|EFJ27555.1| hypothetical protein SELMODRAFT_441621 [Selaginella moellendorffii]
Length = 250
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 92/238 (38%), Gaps = 27/238 (11%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---------N 54
+R DGR+ R + A GSA GDTKV+ +V+GP+ K N
Sbjct: 26 ERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLN 85
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
N + S + + G E++ +L +++ L P TT V V+ G
Sbjct: 86 CNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGG 145
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LP + A AL DAGI + L A+ S + G +LDP+ EE
Sbjct: 146 DLPVIVTCASLALADAGIVLYDLVAAVSASSIQ-GQVLLDPSTSEEN------------- 191
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS +V P I G S LE A AK+ D +R L+
Sbjct: 192 ----CEDGSLMVAYMPSRKEITQVTMTGEWSSSRASESLELCLDACAKIGDVMRSCLK 245
>gi|291237650|ref|XP_002738745.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 273
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR PN +RP+ C I+ A GSA DTKV AVYGP+ ++ + ++
Sbjct: 37 RHDGRKPNDIRPIFLRCGIISNAKGSAYIETKDTKVTCAVYGPRQVVRREDFKLTGTLTC 96
Query: 65 IWKPRTGQIGK--------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+K T K EK+ +I+ + ++ L P + I V+ + G+ L
Sbjct: 97 DFKFATFSCQKRQQHMQSSNEKDLSLIVLQAMEPAVCLEKYPRAQIDIFITVLQNGGSAL 156
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMK 164
AI A AAL AGI M + V C C++DP EE K
Sbjct: 157 SAAITCASAALAAAGIEMYDVVVG-CSTRQIGNTCLVDPAYDEEYNSK 203
>gi|126459546|ref|YP_001055824.1| exosome complex exonuclease Rrp41 [Pyrobaculum calidifontis JCM
11548]
gi|254782536|sp|A3MUP1.1|ECX1_PYRCJ RecName: Full=Probable exosome complex exonuclease 1
gi|126249267|gb|ABO08358.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
calidifontis JCM 11548]
Length = 246
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L V + + G +LD LE+ +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDNYGEG 183
>gi|407409247|gb|EKF32229.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi marinkellei]
Length = 280
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 88/197 (44%), Gaps = 43/197 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R S L + GSA +SQG T V+AAV GP A + E+ K ++V
Sbjct: 7 RRDGRGFREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQV 64
Query: 65 -----IWKPRTG------------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
+ PR G + + + E E+ L ++Q++ L P V I
Sbjct: 65 YVNRAVRIPRAGGTDRICMEEQRVEQHRMDAELEMFLTTSIQAVVRLDQFPRCVLEVHIT 124
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESGYCI------------- 152
++ +DGALL A NA AL+DAG+P + AV+I + E G +
Sbjct: 125 ILAEDGALLSVATNALMCALLDAGVPCRTTVAAVSIVAFAPEDGSLVTAPTTKTKTAAPE 184
Query: 153 ---------LDPTKLEE 160
LDPT +EE
Sbjct: 185 ASSFSLALLLDPTGVEE 201
>gi|195166781|ref|XP_002024213.1| GL22907 [Drosophila persimilis]
gi|194107568|gb|EDW29611.1| GL22907 [Drosophila persimilis]
Length = 328
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 33/251 (13%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKASIEV 64
G+NP +L PL +L GSA G+TKV+A V P T + N + V
Sbjct: 39 GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHELMRATARRMNMGVINCFV 97
Query: 65 IWKP-RTGQIGK-PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+ TG++ PE+E + +L + L+ + T N + + ++ DDG LL AI
Sbjct: 98 NFAAFATGELESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 157
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMK----GFAYLVFPNSIL 176
N ALV+ GI L A C L+PT EE+ ++ G A NS
Sbjct: 158 NCCGVALVECGISTYDLVTASTACIYRDN-VFLNPTAKEEELLRKHRGGHALAGSENS-- 214
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTH------------GAMSVDDYFHCLERGRAASAKLS 224
SS G P EHG+IT+ + G +S Y L+ A + L
Sbjct: 215 ------SSTTTGAPQEHGLITTASMDTFDQLAQCQQCGYLSPGTYVKLLDYTLAINKSLR 268
Query: 225 DFLRRSLQSKL 235
+RR L +++
Sbjct: 269 QIIRRVLTARI 279
>gi|198466492|ref|XP_001354017.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
gi|198150625|gb|EAL29754.2| GA20773 [Drosophila pseudoobscura pseudoobscura]
Length = 328
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 107/251 (42%), Gaps = 33/251 (13%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKASIEV 64
G+NP +L PL +L GSA G+TKV+A V P T + N + V
Sbjct: 39 GKNPKKLSPL-LRAGVLTTVRGSAYMEYGNTKVMAIVAPPHEMMRATARRMNMGVINCFV 97
Query: 65 IWKP-RTGQIGK-PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+ TG++ PE+E + +L + L+ + T N + + ++ DDG LL AI
Sbjct: 98 NFAAFATGELESVPEREKHLGSMLSKALEPVVCRTEFLNFQLDIRVLILDDDGCLLSTAI 157
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMK----GFAYLVFPNSIL 176
N ALV+ GI L A C L+PT EE+ ++ G A NS
Sbjct: 158 NCCGVALVECGISTYDLVTASTACIYRDN-VFLNPTAKEEELLRKHRGGHALAGSENS-- 214
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTH------------GAMSVDDYFHCLERGRAASAKLS 224
SS G P EHG+IT+ + G +S Y L+ A + L
Sbjct: 215 ------SSTTTGAPQEHGLITTASMDTFDQLAQCQQCGYLSPGTYVKLLDYTLAINKSLR 268
Query: 225 DFLRRSLQSKL 235
+RR L +++
Sbjct: 269 QIIRRVLTARI 279
>gi|145592134|ref|YP_001154136.1| exosome complex exonuclease Rrp41 [Pyrobaculum arsenaticum DSM
13514]
gi|379003148|ref|YP_005258820.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
gi|254782535|sp|A4WM67.1|ECX1_PYRAR RecName: Full=Probable exosome complex exonuclease 1
gi|145283902|gb|ABP51484.1| ribosomal RNA-processing protein RRP41/SKI6 [Pyrobaculum
arsenaticum DSM 13514]
gi|375158601|gb|AFA38213.1| archaeal exosome-like complex exonuclease 1 [Pyrobaculum oguniense
TE7]
Length = 246
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + S ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMK 135
++ AA AL DAGI M+
Sbjct: 134 TRVASLTAASLALADAGIYMR 154
>gi|146417428|ref|XP_001484683.1| hypothetical protein PGUG_02412 [Meyerozyma guilliermondii ATCC
6260]
Length = 242
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 82/181 (45%), Gaps = 12/181 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + GS+ QG+TKV+ V GP + T+ + +A+I
Sbjct: 13 RVDGRRWNELRRFECKINTHPNSLTGSSYVEQGNTKVICMVEGPLEPETRSQVDVSRATI 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV I + + + K E + ++RT + I + P T V + V+ DG
Sbjct: 73 EVNIAVASFSTIERKKRLKNEKRIIELKATMERTFEQSVICKLYPRTVIKVNLHVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+L INA AL+DAGI M + VA + +LD LEE M V
Sbjct: 133 GMLATMINATTLALIDAGIAM-YDYVAAVAAGLHNETPLLDLNTLEENDMSHLTLGVIGK 191
Query: 174 S 174
S
Sbjct: 192 S 192
>gi|348678286|gb|EGZ18103.1| hypothetical protein PHYSODRAFT_504652 [Phytophthora sojae]
Length = 713
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 69/161 (42%), Gaps = 25/161 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR ++R + + R GSA + QG+TKV+A VYGP+
Sbjct: 28 RVDGRRSEEVRRIRTRFGLFSRVDGSAYYEQGNTKVVAVVYGPRELRVGPAGGAAAVGTG 87
Query: 49 -AGTKKNENPEKA-SIEVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPN 99
N P + E KP++ E + +K+ ++ + P
Sbjct: 88 SGNAASNTQPRAVVNCEFTQAAFATSERKPQRSGDRKKVEMSLAVKQIFEACVQTQLYPR 147
Query: 100 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+ + +QV+H DG LP +INA AL+DAGI + VA
Sbjct: 148 SQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVA 188
>gi|424819350|ref|ZP_18244459.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
gi|269986356|gb|EEZ92654.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum ARMAN-4]
gi|326422442|gb|EGD71841.1| 3' exoribonuclease [Candidatus Parvarchaeum acidiphilum
ARMAN-4_'5-way FS']
Length = 235
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 24/244 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK 59
M +R D R ++LRP+ I+ A GSA + G+T+ +AAVYGP+ ++ E K
Sbjct: 1 MYEERFDKRKFDELRPMEAETGIIPNAKGSARFKIGNTEAIAAVYGPEEVKPRHIEKVNK 60
Query: 60 ASIEVIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHD 111
I + P + G ++ EI ++ L IL P +V I +
Sbjct: 61 GIIVCKYDMLPFSVPDRARPGMDRRDIEISQVITNALNRAVILEEMPRAMVNVRIYITQA 120
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
D ++ AA A DAG+PM+ L A+ C LD TK EE +G A V
Sbjct: 121 DAGTRCASLTAASMACADAGLPMRDLVAAVAAGKIGDSIC-LDLTKEEEDFHEGGATDV- 178
Query: 172 PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231
P ++L P ++ I+ G ++ ++ +E G+ + ++ + + +L
Sbjct: 179 PIALL-------------PSKNEIVLLQLDGKVTREELKKVIEMGKKGAMEIYELEKAAL 225
Query: 232 QSKL 235
+ +
Sbjct: 226 KRRF 229
>gi|317029576|ref|XP_001391907.2| exosome complex endonuclease 1 [Aspergillus niger CBS 513.88]
gi|350635872|gb|EHA24233.1| hypothetical protein ASPNIDRAFT_39724 [Aspergillus niger ATCC 1015]
gi|358368844|dbj|GAA85460.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus kawachii IFO 4308]
Length = 269
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L S + GS+ + G+T +L +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTAILCSVHGPAEGRRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V K R G K IL+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRKRRAGGSDKQSSRVATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG+LL A+NA ALVDAGIPM L +C C++
Sbjct: 135 SSDGSLLAAAVNACTLALVDAGIPMPGL---LCGCTS 168
>gi|367014877|ref|XP_003681938.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
gi|359749599|emb|CCE92727.1| hypothetical protein TDEL_0E04840 [Torulaspora delbrueckii]
Length = 246
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + H A GS+ QG+ KV+ V GP+ + +++ + KA +
Sbjct: 13 RLDGRRWNELRRFECSINTHSHAADGSSYLEQGNNKVITLVKGPQEPSSRSQVDTAKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ I K R+ K E+ E + L RT +L + P T ++ + V+ D
Sbjct: 73 RISVNITKFSKTERSKTSHKNERRVLEMQTALVRTFNKNVMLNVYPRTLINIEVHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M + ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGIAMYDYISGVSVGLYDT-TPLLDTNSLEENAM 182
>gi|225435349|ref|XP_002285257.1| PREDICTED: exosome complex component MTR3 [Vitis vinifera]
gi|147834996|emb|CAN61380.1| hypothetical protein VITISV_037546 [Vitis vinifera]
gi|297746275|emb|CBI16331.3| unnamed protein product [Vitis vinifera]
Length = 254
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 98/236 (41%), Gaps = 29/236 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR +Q RP ++ A GSA G+TKV+ +V+GP+ K
Sbjct: 32 RPDGRGFHQCRPAFLKTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMAYSGTGRLNC 91
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G K Y +L + L+ I+ P TT V V+ G+ LP
Sbjct: 92 NVSYTTFAMPIRGQ-GSDHKGYSSMLHKALEGAIIVESFPKTTVDVFALVLESGGSDLPV 150
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSIL 176
I+ A AL DAGI M L +V++ C ++DP LEE+ +
Sbjct: 151 VISCASLALADAGIMMYDLVASVSVSCLGKN---LVIDPI-LEEESYQ------------ 194
Query: 177 SVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS L+ P + + +G S ++ A +KL+ +R L+
Sbjct: 195 ----DGSLLITCMPSRNEVTQLTVNGEWSTPRVHEAMQICLEACSKLAKIIRSCLK 246
>gi|344231786|gb|EGV63668.1| ribosomal protein S5 domain 2-like protein [Candida tenuis ATCC
10573]
gi|344231787|gb|EGV63669.1| hypothetical protein CANTEDRAFT_114736 [Candida tenuis ATCC 10573]
Length = 242
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG++K++ V GP + + + KA+I
Sbjct: 13 RVDGRRWNELRRFECKINTHPNSSDGSSYVEQGNSKIICMVQGPMEPKLRSQMDVNKANI 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + K E + ++ T ++ I + P T + IQV+ DG
Sbjct: 73 EVSISIAHFSTFHRKKRSKNEKRIVELKTAIENTFENSIISHLYPRTFIQINIQVLAQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA--ESGYCILDPTKLEEQKM 163
LL NAA AL+DAGI M + C SA Y +LD LEE M
Sbjct: 133 GLLAGMANAATLALIDAGIAMYDY---VSCVSAGLYDQYPLLDLNTLEENDM 181
>gi|344302854|gb|EGW33128.1| hypothetical protein SPAPADRAFT_136405 [Spathaspora passalidarum
NRRL Y-27907]
Length = 219
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 98/223 (43%), Gaps = 21/223 (9%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 81
S+L + GSA G+TKV+A+V GP ++ E P +AS+E+I +P G EK E
Sbjct: 8 SVLDNSDGSAELIIGNTKVIASVSGPIEPKQRQELPNQASLEIIIRPAKGLSTTREKLLE 67
Query: 82 IILKRTLQSICILTINPNTTTSVIIQVVHDD------GALLPCAINAACAALVDAGIPMK 135
L+ LQSI I P S+++Q + D L AIN AL+DA I +
Sbjct: 68 DKLRALLQSIIIRYKYPRQLISIVVQFLVTDEDPKFTANELNAAINCCYFALIDADIALY 127
Query: 136 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 195
++ C E+ I +PT E + + F + EG + I
Sbjct: 128 SSFASVVSCITENK-LIQNPTGKELSQSDSHHVVCFN------IQEGKA--------DKI 172
Query: 196 ITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
+ + G ++ F+ L + + +L R+ L+ K+ D
Sbjct: 173 LLLESQGEFVQEELFNLLSESVSNAEELHTLQRKYLKEKIDQD 215
>gi|116182446|ref|XP_001221072.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
gi|88186148|gb|EAQ93616.1| hypothetical protein CHGG_01851 [Chaetomium globosum CBS 148.51]
Length = 253
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 111/250 (44%), Gaps = 37/250 (14%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
+ +L R+ GSA +S + A+V GP +++E+ +A +EVI +P G G E+
Sbjct: 9 AALGVLPRSDGSAKYSHAGYTLTASVNGPIEAQRRDEHAYEAHVEVIVRPAAGVGGTRER 68
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E +L+ +L + ++ P + V++Q+ + A++P + A
Sbjct: 69 HLESLLQSSLAQLILVKNFPRSLIQVVLQIEDSPENDYVNTKLVQASLNFAIMPALVQTA 128
Query: 124 CAALVDAGIPMKHLAVAICCCSAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSV 178
AL+ AG+PM+ A A + ++DP++ E + L F N +L
Sbjct: 129 ILALLSAGVPMRATATATAVAVVHQDGAKKTVVDPSQREVETASSVHVLAFTSHNGLLLA 188
Query: 179 LPEGSSLVQGE-----PMEHGI---ITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRR 229
EG V GE GI TSV G AM +DD ++ + FLR
Sbjct: 189 ESEGDFTV-GEWDDVYETAKGICCRSTSVKEGTAMVLDDE-------EPSATDMRQFLRS 240
Query: 230 SLQSKLPGDL 239
+++SK+ DL
Sbjct: 241 TMESKVAADL 250
>gi|161527940|ref|YP_001581766.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
gi|259645400|sp|A9A5C9.1|ECX1_NITMS RecName: Full=Probable exosome complex exonuclease 1
gi|160339241|gb|ABX12328.1| exosome complex exonuclease 1 [Nitrosopumilus maritimus SCM1]
Length = 244
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++ R + L A GS+ GD K+L V+GP+ K + + +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + +G+ +E EI ++K L+ +L P T V I+V+ DG
Sbjct: 77 VRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
A+ AA AL DAGIPM+ + AI + ILD E+Q
Sbjct: 137 RCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTVILDVNNEEDQ 181
>gi|358400730|gb|EHK50056.1| hypothetical protein TRIATDRAFT_297398 [Trichoderma atroviride IMI
206040]
Length = 247
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+ PL S L + GSA+++ G V AAV GP +++ENP +A ++V +P G
Sbjct: 1 MAPLTAELSHLPKTDGSANFAYGGYTVTAAVNGPVEAQRRDENPFEALVDVNVRPAAGVG 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPC 118
G E++ E IL+ L+ + + P V +QV+ + ++P
Sbjct: 61 GTGERQLEAILQPALRHLIPVRNFPRCVIQVTLQVMETPENAYVNSKVMQPRLNLGIIPA 120
Query: 119 AINAACAALVDAGIPMKHLAVAICCC--SAESGYCILDPTKLEEQKMKGFAYLVF 171
++AA L+ A +PMK +A A C +A+ +DPT E + + L F
Sbjct: 121 LLHAAILGLLTAAVPMKTVASATCLAITNADGSSVKVDPTPAEIDQARSVHVLGF 175
>gi|50307027|ref|XP_453491.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642625|emb|CAH00587.1| KLLA0D09625p [Kluyveromyces lactis]
Length = 245
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR CS + + A GS+ QG+ K++ V GP+ + +++ N ++A++
Sbjct: 13 RVDGRRWNELRSFNCSINTHPNAADGSSYLEQGNNKIITLVAGPQEPSSRSQVNTKQATL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V R+ K E+ E++ L RT + +L + P T+ V + + D
Sbjct: 73 SVTINLTKFAKMERSKSSHKNERRTLEWQASLVRTFEKNLMLHLYPRTSIDVQVHALQLD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G +L +N AL+DAGI M + ++ +LD LEE M
Sbjct: 133 GGILGAMLNGITLALIDAGIAMYDFVSGVSVGLYDT-TPLLDLNSLEENAM 182
>gi|115442662|ref|XP_001218138.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114188007|gb|EAU29707.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 268
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 73/157 (46%), Gaps = 18/157 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAG-----TKKNENPEK 59
R DGR N+LR S + GS+ + G+T ++ +V+GP G T +
Sbjct: 15 RLDGRRWNELRLFQAQISTNPASSGSSYLAMGNTTIMCSVHGPAEGRRGDATGGSAGSSG 74
Query: 60 ASIEVI----------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
A +EV K R G + L+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRKRRAGGSDRQSSRVATTLRAAFQSHLHTYLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG+LL A+NA ALVDAGIPM L +C C+A
Sbjct: 135 SSDGSLLAAAVNACTLALVDAGIPMPGL---LCGCTA 168
>gi|357121840|ref|XP_003562625.1| PREDICTED: exosome complex component MTR3-like [Brachypodium
distachyon]
Length = 262
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 76/168 (45%), Gaps = 10/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKASI 62
RADGR+ + RP A GSA G TKV+ +V+GP+ K + + +
Sbjct: 40 RADGRSFHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99
Query: 63 EVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
V + I G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 100 NVSYTTFATGIRGQGLDNKEYSEMLHKALEGAVMLDTFPKTTVDVFALVLESGGSDLPII 159
Query: 120 INAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L +V++ C I+DPT EE G
Sbjct: 160 ISCASLALADAGIMMYDLVTSVSVSCLGKN---VIIDPTSDEEAWQDG 204
>gi|50288675|ref|XP_446767.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526075|emb|CAG59694.1| unnamed protein product [Candida glabrata]
Length = 246
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 80/171 (46%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR + + H A GS+ QG+ KV+ V GPK T K++ + +KA +
Sbjct: 13 RLDGRRWNELRRFESAINTHPHAADGSSYLEQGNNKVITLVKGPKEPTLKSQMDIQKAIL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+V R+ K E+ E + L RT + +L + P T + I V+ D
Sbjct: 73 KVTVNITKFSKFERSKSSHKNERRVLEMQTALVRTFEKNVMLHVYPRTLIDIEIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ +N AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGTLLNGISLALIDAGIAMYDYVSGISVGLYDTT-PLLDINSLEENAM 182
>gi|390598731|gb|EIN08128.1| hypothetical protein PUNSTDRAFT_102893 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 276
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 20/177 (11%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+R + C L RA GSA ++ G TK LA+V GP +NE P +A+ EVI +P +G
Sbjct: 1 MREIVVICEGLDRADGSARFAFGLTKCLASVSGPIEVRPQNELPTQAAFEVIVRPLSGVA 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG---------ALLP------- 117
G K L+ L ILT +P T +++Q +++D LP
Sbjct: 61 GTRAKSIGTTLQFLLAPSIILTAHPRTLLQLVVQALNEDSPPTPSLCRMTFLPDTMSGLA 120
Query: 118 CAINAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLV 170
INA+ AL++AG I M+ + A+ SG ++DP E + FA+++
Sbjct: 121 AMINASTIALLNAGSIQMRGVVCAVAVGVDTSGSLLVDPAPSELPHLAACGCFAFII 177
>gi|407854103|gb|EKG06647.1| ribosomal RNA processing protein 41B, putative,3' exoribonuclease,
putative [Trypanosoma cruzi]
Length = 285
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 19/148 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R S L + GSA +SQG T V+AAV GP A + E+ K ++V
Sbjct: 7 RRDGRGHREMRGKELRTSELTQFDGSAWYSQGLTTVVAAVNGPVAA--RQEDYRKCGVQV 64
Query: 65 -----IWKPRTG------------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
+ PR G + + + E E+ L ++Q++ L P V +
Sbjct: 65 YVNRAVRIPRAGGTDRLCVEEQRVEQRRMDAEVEMFLTASIQAVVRLDQFPRCVLEVHVT 124
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK 135
++ DDGALL A NA AL+DAG+P +
Sbjct: 125 ILADDGALLSVATNALMCALLDAGVPCR 152
>gi|310793767|gb|EFQ29228.1| exosome complex subunit Rrp46 [Glomerella graminicola M1.001]
Length = 243
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 81
S L RA GSA++S+G V+++V GP +++ENP ++ ++V+ +P G G E++ E
Sbjct: 12 SHLPRADGSATFSRGGYCVVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTGERQLE 71
Query: 82 IILKRTLQSICILTINPNTTTSVIIQVV---HDDGA------------LLPCAINAACAA 126
IL+ L+ + + P + +QV +D A LLP ++A +
Sbjct: 72 NILQSALRQLIPVKNFPRCLIQITLQVTETPQNDYANSKVVQAQSSLTLLPALFHSAVLS 131
Query: 127 LVDAGIPMKHLAVAICCCSAESGYCIL-DPTKLEEQKMKGFAYLVF 171
L+ A +P+K +A E G I+ DP+ LE K L F
Sbjct: 132 LLSAAVPLKAIATCTTLAILEDGSKIIADPSPLEADHAKSLHVLSF 177
>gi|301097298|ref|XP_002897744.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
gi|262106765|gb|EEY64817.1| exosome complex exonuclease RRP41-like protein [Phytophthora
infestans T30-4]
Length = 777
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 29/165 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR ++R + + R GS+ + QG+TKV+A VYGP+
Sbjct: 26 RVDGRRSEEVRRIRTRFGLFSRVDGSSYYEQGNTKVVAVVYGPRELRTAAAGSVNSGAAA 85
Query: 49 ----AGTKKNENPEKASI--EVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILT 95
+G + +A++ E KP++ E + +K+ ++
Sbjct: 86 VGTGSGNAASNTQPRATVNCEFTQAAFATSERKPQRSGDRKKLEMSLAVKQIFEACIQTQ 145
Query: 96 INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+ P + + +QV+H DG LP +INA AL+DAGI + VA
Sbjct: 146 LYPRSQIDIFVQVLHADGGELPASINAITLALIDAGIALNDFVVA 190
>gi|268532254|ref|XP_002631255.1| C. briggsae CBR-CRN-5 protein [Caenorhabditis briggsae]
Length = 214
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 9/156 (5%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP N E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGSTCIWASCSGPGDVHASKANEEAMTLDISYRANCG- 62
Query: 73 IGKPEKEYEI---ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVD 129
+ ++ + I++ TL L + P+T V I + DDG++ ++N AC AL+D
Sbjct: 63 ----DNKFSVLNNIIQSTLAKAINLELFPHTGLVVTIHGIQDDGSMGAVSLNGACFALLD 118
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
G+P + + + + I+DPT +E G
Sbjct: 119 NGMPFETVFCGVLIVRVKDEL-IIDPTAKQEAASTG 153
>gi|320590667|gb|EFX03110.1| exosome complex subunit [Grosmannia clavigera kw1407]
Length = 246
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
L + L RA GSA++S G V A+ GP +++E+P+ A+I+V+ +P G G
Sbjct: 6 LQARLATLPRADGSATYSHGGYTVTASANGPIEAQRRDEDPDAANIDVVVRPAAGVGGPS 65
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
E+ +E+IL++TLQ I ++ P T V++Q+
Sbjct: 66 ERNHELILQKTLQDIVLVQEFPRCTIQVVLQI 97
>gi|255513309|gb|EET89575.1| 3' exoribonuclease [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 246
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 69/243 (28%), Positives = 116/243 (47%), Gaps = 24/243 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR+ N+LRPL IL A+GSA G+ KVLAAVYGPK T ++ + KA I+
Sbjct: 16 RLDGRDFNELRPLKIEAGILANANGSAYLEWGNNKVLAAVYGPKEATPRHLADTNKAIIK 75
Query: 64 VIWK--PRT-----GQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ P + G+ G + EI + K +++ +L P + + I+++ DG
Sbjct: 76 CRYSMAPFSSMGDHGRSGPNRRAIEISKVTKEVFENVVMLEEFPGSEIEIFIEILQSDGG 135
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
I AA AL +AGI +K + A+ + + ++D +E+ ++ P
Sbjct: 136 TRAAGITAAAVALANAGIHVKDMVYAVSAGRIDE-HVVIDVNMIEDN----YSDADMP-- 188
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+S+ P+ +S++ + M+ G AM + LE G+ S D L+R ++
Sbjct: 189 -VSISPKDNSVLLLQ-MDGGFTKEQFGEAMKM-----ILESGKVISKVQRDALKRLYENA 241
Query: 235 LPG 237
G
Sbjct: 242 EKG 244
>gi|67526709|ref|XP_661416.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|40740830|gb|EAA60020.1| hypothetical protein AN3812.2 [Aspergillus nidulans FGSC A4]
gi|259481631|tpe|CBF75330.1| TPA: exosome complex endonuclease 1/ribosomal RNA processing
protein, putative (AFU_orthologue; AFUA_2G03740)
[Aspergillus nidulans FGSC A4]
Length = 265
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--- 61
R DGR N+LR L S + GS+ + G+T +L +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSSG 74
Query: 62 ------------IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V K R G + L+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG++L A+NA ALVDAGIPM L +C C+A
Sbjct: 135 SSDGSVLAAAVNACTLALVDAGIPMPGL---LCGCTA 168
>gi|25152573|ref|NP_497279.2| Protein EXOS-4.2 [Caenorhabditis elegans]
gi|351064253|emb|CCD72537.1| Protein EXOS-4.2 [Caenorhabditis elegans]
Length = 241
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 1 MEVDRADGRNPNQ-LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK 59
ME D + + N RPL C + GS G+T+VLA + GP K E+ K
Sbjct: 23 METDSEEHKRANTAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPDGDGKWEEDRAK 82
Query: 60 ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
+IE+ + ++ EY L + ++ + P + I V+ DDG +L A
Sbjct: 83 ITIELKGIEDSVKVA----EYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGVLSTA 138
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE-EQKMKGFAYLVFPN 173
++A A+ +GI L ++ G C+ DP+ E E + G + PN
Sbjct: 139 LSAVTLAISHSGIENMGLMASVHVAMNSDGECLTDPSTSESEGAIGGVTFAFVPN 193
>gi|397579612|gb|EJK51273.1| hypothetical protein THAOC_29565, partial [Thalassiosira oceanica]
Length = 340
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 15/130 (11%)
Query: 29 GSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIWK------PRTGQIGKPEKEYE 81
GSA + G TKVL + GP T+++E P++AS+EV+ + P + P +
Sbjct: 109 GSAMVTLGLTKVLCSSGGPCDATRRSEELPDRASLEVLVRAAPFAPPGDRRNVNPTTDRR 168
Query: 82 II-----LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
++ L+R L + +L + P + SV + V+ DDG L +INAA AL+DAGIP++
Sbjct: 169 LVEASHLLQRALSASILLHLFPRSKISVTVMVLADDGGRLEASINAATLALMDAGIPLRD 228
Query: 137 LAVAICCCSA 146
+ +C CSA
Sbjct: 229 M---VCACSA 235
>gi|326521482|dbj|BAK00317.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGR+ + RP A GSA G TKV+ +V+GP+ K + +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99
Query: 65 IWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
T GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 100 SVSYTTFATGIRGQ-GLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 158
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L +V++ C I+DPT EE G
Sbjct: 159 IISCASLALADAGIMMYDLVTSVSVSCLGKN---VIIDPTSDEEAWQDG 204
>gi|302760867|ref|XP_002963856.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
gi|300169124|gb|EFJ35727.1| hypothetical protein SELMODRAFT_80529 [Selaginella moellendorffii]
Length = 250
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 92/238 (38%), Gaps = 27/238 (11%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---------N 54
+R DGR+ R + A GSA GDTKV+ +V+GP+ K N
Sbjct: 26 ERIDGRHAQMCRAAFLRTGAVRAAAGSAYAESGDTKVIVSVFGPRESKKAEAFSDAGRLN 85
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
N + S + + G E++ +L +++ L P TT V V+ G
Sbjct: 86 CNVKYCSFATPVRGKMGAANAEERDLSSMLYKSVVGAVDLRTFPKTTVDVFALVLQSGGG 145
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LP + A AL DAGI + L A+ S + G +LDP+ EE
Sbjct: 146 DLPVIVTCASLALADAGIVLYDLVAAVSVSSIQ-GQVLLDPSTSEEN------------- 191
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
+GS +V P I G S L+ A AK+ D +R L+
Sbjct: 192 ----CEDGSLMVAYMPSRKEITQVTMTGEWSSSRASESLDLCLDACAKIGDVMRSCLK 245
>gi|70989313|ref|XP_749506.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Aspergillus fumigatus Af293]
gi|66847137|gb|EAL87468.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus Af293]
Length = 269
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L S + GS+ S G+T ++ +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V + R G + IL+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
DG+LL A+NA ALVDAGIPM L A C S SG
Sbjct: 135 SADGSLLAAAVNACTLALVDAGIPMPGLLSA--CTSGMSG 172
>gi|156937005|ref|YP_001434801.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
gi|156565989|gb|ABU81394.1| ribosomal RNA-processing protein RRP41/SKI6 [Ignicoccus hospitalis
KIN4/I]
Length = 241
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P LRPL +L+ A GSA G T+V+AAVYGP+ + P++A I
Sbjct: 15 RHDGRGPADLRPLEMKVGVLYNADGSAWLRIGGTEVVAAVYGPREPPMRGMVLPDRAVIR 74
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + + E E +++ L++ + + P T V I+V+ DG
Sbjct: 75 CRYHMAPFSTDERKNPAPSRREIELSKVIREALEATILTHLFPRTIIDVFIEVIRADGGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ AA AL DAGIPMK L + + G +LD +LE+
Sbjct: 135 RTAALTAASLALADAGIPMKGLVAGVAVGKVQ-GTLVLDIDELED 178
>gi|346971917|gb|EGY15369.1| exosome complex exonuclease RRP41 [Verticillium dahliae VdLs.17]
Length = 275
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------AGTKKNENP 57
R DGR N+LR L A GS+ G TKV+ V GP AG + +
Sbjct: 14 RVDGRRWNELRRLQAQIRTQDAADGSSYLEIGHTKVMCVVTGPTEPQRRGPAGGQSKDAA 73
Query: 58 EKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
SI V + + + G+ K E E + + S + P+++ + + V+ D
Sbjct: 74 VNVSIVVAGFSSVDRRKYGRNDKRISELEATVSKAFASTLHTHLFPHSSIYISLHVLSQD 133
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMK 164
G+LL +NA ALVDAGIPM +A C + S Y +LD EEQ++
Sbjct: 134 GSLLAALLNATTLALVDAGIPMTDY-IAACTAGSTSTYAAADDGADPLLDLNTQEEQELP 192
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPME 192
+S V+ S VQ +E
Sbjct: 193 FLTAATLGDSDKVVVLVCESRVQASRLE 220
>gi|119479959|ref|XP_001260008.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
gi|119408162|gb|EAW18111.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Neosartorya fischeri NRRL 181]
Length = 269
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L S + GS+ S G+T ++ +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V + R G + IL+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
DG+LL A+NA ALVDAGIPM L A C S SG
Sbjct: 135 SADGSLLAAAVNACTLALVDAGIPMPGLLSA--CTSGMSG 172
>gi|326436033|gb|EGD81603.1| hypothetical protein PTSG_02318 [Salpingoeca sp. ATCC 50818]
Length = 221
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 87/183 (47%), Gaps = 10/183 (5%)
Query: 6 ADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE-- 63
ADG Q R + ++ +A GSA + G+TKV+AA YGP + +++ E ++
Sbjct: 31 ADGAK-AQPRSVFAEVGVVSQAKGSAFFEIGNTKVVAACYGPLSTSRRQGFQETCILDCD 89
Query: 64 VIWKPRTG---QIGKP---EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
V + P +G Q K E+E +L+ +L+ ++ P + V V+ DDGA
Sbjct: 90 VKFSPFSGVKHQQTKQTALERELSQLLESSLKPCVCVSKYPKSVIQVYATVLQDDGAAFS 149
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE-QKMKGFAYLVFPNSIL 176
INAA AL +AGI M L A C SG PT+ EE K+ + + P +
Sbjct: 150 AVINAASMALANAGIEMFDLLAAASVCFDTSGGLHPHPTRDEEAAKVHAYNPMRLPKGLF 209
Query: 177 SVL 179
L
Sbjct: 210 VSL 212
>gi|159128917|gb|EDP54031.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Aspergillus fumigatus A1163]
Length = 269
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 17/160 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE- 63
R DGR N+LR L S + GS+ S G+T ++ +V+GP G + + A
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSFLSMGNTSIMCSVHGPAEGKRGDATGGAAGSAG 74
Query: 64 --------------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
V + R G + IL+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNIAGFAGVDRRRRAGGSDRQSSRIATILRSAFQSHLHTHLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
DG+LL A+NA ALVDAGIPM L A C S SG
Sbjct: 135 SADGSLLAAAVNACTLALVDAGIPMPGLLSA--CTSGMSG 172
>gi|76155868|gb|AAX27138.2| SJCHGC06185 protein [Schistosoma japonicum]
Length = 251
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASI- 62
R DGR PN+LR + C + + G QG+TKV+A+V GP A TK + NP+ A+I
Sbjct: 3 RVDGRRPNELRRVHCQFGSGN-SDGIVFLHQGNTKVIASVVGPHAPRTKGDGNPDGATII 61
Query: 63 -EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ P G+ K ++ ++ + P + + ++V+ D
Sbjct: 62 CQFTKPPFASTSGERRKVASNDRSANDFSTAIEEIFSCVVRTEKYPMSQIDIFLEVIQSD 121
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVA 140
G+ CA+NA AL DAGI M +L A
Sbjct: 122 GSEFACAVNATTLALTDAGIEMHYLVSA 149
>gi|405978444|gb|EKC42833.1| Exosome complex exonuclease MTR3 [Crassostrea gigas]
Length = 426
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--------PRTGQIG 74
I+ +A GSA Q +TKV+ AVYGP+ TKK E K + +K R Q
Sbjct: 207 IISQARGSAYIEQNETKVMCAVYGPREVTKKEEFSMKGQLTCEFKFATFSCRVRRQYQQD 266
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 134
E++Y L+ L+ + P +V + V+ +DG+ L ++ A AL +AGI M
Sbjct: 267 NEERDYSCQLQDALEPAVRMDKFPKAQVNVYVTVLQNDGSPLAASLTCASVALANAGIEM 326
Query: 135 KHLAVAICCCSAESGYCILDPTKLEEQK 162
L V C +DPT+ E+ K
Sbjct: 327 YDLVVG-CSARITPSEVFIDPTESEDYK 353
>gi|452982879|gb|EME82637.1| hypothetical protein MYCFIDRAFT_80273 [Pseudocercospora fijiensis
CIRAD86]
Length = 251
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 20/175 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKASI 62
R DGR N+LR + S A GS+ + G+TK++ V GP+ T+ + ASI
Sbjct: 14 RVDGRRWNELRRIHGQMSTQAAADGSSYFEMGNTKIICTVLGPRQQTRGGGRDQSRSASI 73
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + + + + K +E + + S + ++ P +T S+++ V+ DG
Sbjct: 74 EVEIGIAGFSGMDRKKRSRTDKRTQEMQYTISSAFASTILTSLYPQSTISIMLHVLSQDG 133
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEE 160
ALL +NAA AL+DAGIPMK VA C + + Y +LD +EE
Sbjct: 134 ALLAACLNAATLALIDAGIPMKDY-VAACTTGSTASYASNDEEADPLLDLNGMEE 187
>gi|343473099|emb|CCD14915.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 255
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 86/194 (44%), Gaps = 25/194 (12%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
V R DGR P ++R S L + GS +SQG T V A+ GP A ++N ++
Sbjct: 4 VTRRDGRGPCEMRGKELRASDLSQFDGSVWYSQGLTAVCVAINGPTAARQENYRRCTLNV 63
Query: 63 EVIWKPR------TGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQ 107
V R T ++ EK E E L +++ L P V +
Sbjct: 64 RVSRMSRIPPAGGTDRLAVMEKRERQQRADGEMEQFLAGLAEAVVQLDRFPRCVLEVNVM 123
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCC------SAESGYCILDPTKLE 159
V+ DDGALL A NA AL+DAG+P AV++ C E+ +LDPT E
Sbjct: 124 VLMDDGALLAVAANAMMCALLDAGVPCHSTVAAVSLLLCVPAKTEDEETPVLLLDPTAAE 183
Query: 160 E--QKMKGFAYLVF 171
E +++ +A F
Sbjct: 184 ESTDEVRSYAAATF 197
>gi|431908123|gb|ELK11726.1| Exosome complex exonuclease RRP41 [Pteropus alecto]
Length = 287
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 58/211 (27%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--------------- 49
R DGR +LR + + +A GSA QG+TK LA VYGP
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEASGRAPGAGGGLGRR 72
Query: 50 -----------------------------GTKKNENPEKASIEVIWKPRTGQIGKPEK-- 78
G++ P++A + + T G+ ++
Sbjct: 73 RPAHASVYAAHIPGRFNRSKSQSPRTAIRGSRSRALPDRALVNCQYSSATFSTGERKRRP 132
Query: 79 -------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
E + L++T ++ + ++P + + +QV+ DG +NAA A++DAG
Sbjct: 133 HGDRKSCEMGLQLRQTFEAAILTQLHPCSQIDIYVQVLQADGGTYAACVNAATLAVLDAG 192
Query: 132 IPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
IP++ +C CSA G + D + +EE
Sbjct: 193 IPVRDF---VCACSAGFVDGTALADLSHVEE 220
>gi|325189047|emb|CCA23575.1| exosome complex exonuclease RRP41like protein putati [Albugo
laibachii Nc14]
Length = 261
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR + R + + HRA GSA QG+TKVL VYGP+ K + +
Sbjct: 19 RLDGRREAETRRVRARLGVFHRADGSAYIEQGNTKVLVVVYGPREVDGTTLKNAKGAASL 78
Query: 65 IWKP----------------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVII 106
+ K + + K E+ +K+ +S + P + S+
Sbjct: 79 VKKAIVHCECTQASFATSDRKVSRNASDRKNVEMSSAIKQIFESCIFTNLYPQSQISIYP 138
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
QV+ DG L +INA AL+DAGI + VA
Sbjct: 139 QVLQADGGELAASINATSLALMDAGIALNDFVVA 172
>gi|297840733|ref|XP_002888248.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
gi|297334089|gb|EFH64507.1| hypothetical protein ARALYDRAFT_475442 [Arabidopsis lyrata subsp.
lyrata]
Length = 140
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 44/62 (70%), Gaps = 5/62 (8%)
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
+ K E+EYE ILKRTLQSIC+LT+ NTTTSVIIQVVHD G +++ C+ + +
Sbjct: 67 LRKVEREYETILKRTLQSICVLTVVSNTTTSVIIQVVHDGG-----SVSFLCSLHLGKHL 121
Query: 133 PM 134
PM
Sbjct: 122 PM 123
>gi|326514708|dbj|BAJ99715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/169 (33%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
RADGR+ + RP A GSA G TKV+ +V+GP+ K + +
Sbjct: 40 RADGRSLHDCRPAFMQTGPTTAASGSAYAEFGKTKVIVSVFGPRESKKAMLYSDTGRLNC 99
Query: 65 IWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
T GQ G KEY +L + L+ +L P TT V V+ G+ LP
Sbjct: 100 SVSYTTFATGIRGQ-GLENKEYSGMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPI 158
Query: 119 AINAACAALVDAGIPMKHL--AVAICCCSAESGYCILDPTKLEEQKMKG 165
I+ A AL DAGI M L +V++ C I+DPT EE G
Sbjct: 159 IISCASLALADAGIMMYDLVTSVSVSCLGKN---VIIDPTSDEEAWQDG 204
>gi|299470099|emb|CBN78128.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 270
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/177 (33%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P +R + ++ A GSA TKV+ AVYGP A T + E+ ++
Sbjct: 43 REDGRAPYDMRQVYMDVGVVAHATGSAYVEFNHTKVICAVYGPHAQTGGDSAFSEEGQLQ 102
Query: 64 --VIWKP-------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ P R + GK + E E+ +L++TL+S + + V + V+ D
Sbjct: 103 CDFSYAPFAMPGGRRETRGGKKDDERELSTLLRQTLESSIQVHRLTKSVVGVHVMVLQAD 162
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEEQKMKG 165
G L A A AL DAGI + L A CS GYC +LDPTK EE+ G
Sbjct: 163 GGELAVATTCASMALADAGIELYDLVTA---CSV--GYCGTQMVLDPTKEEEKSGAG 214
>gi|294659898|ref|XP_462331.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
gi|199434319|emb|CAG90837.2| DEHA2G18194p [Debaryomyces hansenii CBS767]
Length = 245
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 12/170 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + GS+ QG+TK++ V GP + + N KASI
Sbjct: 13 RIDGRRWNELRRFECRINTHPSSSDGSSYIEQGNTKIICMVQGPMEPSLRSQTNSSKASI 72
Query: 63 EV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
E+ I + + + K E + L+RT + I + P T + + V+ DG
Sbjct: 73 EINLSVANFSTIERKKRLKNEKRLIELKTTLERTFEQSVICKLYPRTVIQINLHVLCQDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
LL NA AL+DAGI M AI + +LD LEE M
Sbjct: 133 GLLAGMTNAITLALIDAGIAMYDYVSAINAGLYDQ-TPLLDLNTLEENDM 181
>gi|123464254|ref|XP_001317083.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
gi|121899808|gb|EAY04860.1| 3' exoribonuclease family, domain 1 containing protein [Trichomonas
vaginalis G3]
Length = 203
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 81/184 (44%), Gaps = 12/184 (6%)
Query: 3 VDRAD-GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
+DR D R + R +AC + + GS+ G T+V+ + GPK + K +
Sbjct: 1 MDRLDTSRVYEEEREIACEKGLCISSQGSSRVRVGKTEVIVNIVGPKQMVFREIETGKVN 60
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
I+ P I K I+ +++ P++ V + +V DDG L CA+N
Sbjct: 61 IKAKSYPENPTINK-------IVADAIENSLKCDAYPDSNLEVSVTIVCDDGGLKACAVN 113
Query: 122 AACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSV 178
A ALVDAG M HL +A + + + DP EE+ G F Y + I+S
Sbjct: 114 ATILALVDAGFEMNHL-LAASSLAVKGDILVNDPNASEEELYDGAATFVYEIDSQKIIST 172
Query: 179 LPEG 182
EG
Sbjct: 173 FFEG 176
>gi|346320011|gb|EGX89612.1| exosome complex exonuclease RRP41 [Cordyceps militaris CM01]
Length = 273
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 28/186 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP----------------- 47
R DGR N+LR L A GS+ G TKV+ V GP
Sbjct: 14 RVDGRRWNELRRLHALIRTQDAADGSSYLEIGHTKVMCVVSGPSEQQQQQQAQRRGGQAN 73
Query: 48 --KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
+ G + N A + + + G+ K +E EI + + S I P+++ ++
Sbjct: 74 ATRDGATVHVNIIIAGFSSVDRKKRGRNDKRIQEMEITIAKAFSSNLHTHIFPHSSIAIS 133
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTK 157
+ V+ DG+LL +NA ALVDAGIPM +A C + S + +LD
Sbjct: 134 LHVLSQDGSLLAALLNATTLALVDAGIPMTDY-IAACTAGSTSSFAAGDDAADPLLDLNT 192
Query: 158 LEEQKM 163
EEQ++
Sbjct: 193 QEEQEL 198
>gi|261326393|emb|CBH09353.1| RNase PH-like protein [Trypanosoma brucei gambiense DAL972]
Length = 256
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
+ R DGR ++R S L + GSA +SQG T V A+ GP A ++N I
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCI 63
Query: 63 EVIWKPRTGQIG---------------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V R Q G + E + L +++I L P +
Sbjct: 64 HVNRAARIPQEGGTGRLIMMERRERERCEDGELKQFLASLVEAIVCLDRFPRCVLEAHVT 123
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESG------YCILDPTKLE 159
V+ DDGAL A NA AL+DAG+P + AV++ C+ E+ LDPT +E
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLLMCNPEASGNEGEPEIFLDPTAVE 183
Query: 160 E--QKMKGFAYLVF 171
E +++ +A F
Sbjct: 184 ESTDEVRSYASATF 197
>gi|308801625|ref|XP_003078126.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
gi|116056577|emb|CAL52866.1| Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related
exoribonucleases (ISS) [Ostreococcus tauri]
Length = 378
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ LR S + A GSA + T V+AAV+GP E ++ I+V
Sbjct: 129 RPDGRSREMLRRQRLHRSRVPSASGSAEYRIDGTIVVAAVHGPLRIAPWREAHDRGVIDV 188
Query: 65 I-----WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
W R Q + E L+ ++ L P + +VV DDG
Sbjct: 189 ELSAPGWMSRDDQ-----RACEGRLRGAIERCVELRDFPRFGLRISARVVSDDGNAEAAC 243
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
+NA C AL+DA +PM+ L A C G ++DPTK EE + +
Sbjct: 244 VNAVCCALIDANVPMRGLICANACALTREGSMVIDPTKREETEARA 289
>gi|156039812|ref|XP_001587013.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980]
gi|154696099|gb|EDN95837.1| hypothetical protein SS1G_12042 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 261
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-------KAGTKKNENP 57
R DGR N+LR + S + GS+ S G+T+VL V GP G N N
Sbjct: 14 RLDGRRWNELRRVTAQISTQPASDGSSYLSMGNTQVLCTVTGPCDPSKLRSIGGGGNSNA 73
Query: 58 -EKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
EKA + V + + + G+ K +E L T + T+ N+T + +
Sbjct: 74 GEKAEVRVEISFAGFAGVDRKKYGRNDKRIQELSNTLSTTFTPHLLTTLTSNSTILLSLH 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 148
++ DG+LL INA+ AL+DAGIPM IC C+A S
Sbjct: 134 ILSLDGSLLSALINASTLALIDAGIPMPSY---ICACTAGS 171
>gi|84043476|ref|XP_951528.1| ribosomal RNA processing protein 41B [Trypanosoma brucei TREU927]
gi|14250914|emb|CAC39262.1| Rrp41p homologue [Trypanosoma brucei]
gi|33348349|gb|AAQ15675.1| ribosomal RNA processing protein 41B [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|62358716|gb|AAX79172.1| ribosomal RNA processing protein 41B [Trypanosoma brucei]
Length = 256
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 84/194 (43%), Gaps = 25/194 (12%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
+ R DGR ++R S L + GSA +SQG T V A+ GP A ++N I
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCI 63
Query: 63 EVIWKPRTGQIG---------------KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V R Q G + E + L +++I L P +
Sbjct: 64 HVNRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVT 123
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESG------YCILDPTKLE 159
V+ DDGAL A NA AL+DAG+P + AV++ C+ E+ LDPT +E
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLIMCNPEASGNEGEPEIFLDPTAVE 183
Query: 160 E--QKMKGFAYLVF 171
E +++ +A F
Sbjct: 184 ESTDEVRSYASATF 197
>gi|66472734|ref|NP_001018322.1| exosome complex component MTR3 [Danio rerio]
gi|123905166|sp|Q6P0I8.2|EXOS6_DANRE RecName: Full=Exosome complex component MTR3; AltName: Full=Exosome
component 6; AltName: Full=mRNA transport regulator 3
homolog
gi|63101434|gb|AAH95173.1| Exosome component 6 [Danio rerio]
gi|68262418|gb|AAH65602.2| Exosome component 6 [Danio rerio]
gi|182890526|gb|AAI64622.1| Exosc6 protein [Danio rerio]
Length = 271
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP 68
R +RP+ C ++ +A GSA G+TK++ +VYGPK +++E K ++
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTG-RLVCDF 95
Query: 69 RTGQI----------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
R G E++ L +L+ L P + V + V+ +DG++L
Sbjct: 96 RLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAH 155
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ A AL DAGI M + + C C++DP+ EE
Sbjct: 156 AVTCASMALADAGIEMYDIVLG-CTLRQSGNACLVDPSYAEE 196
>gi|1323143|emb|CAA97098.1| unnamed protein product [Saccharomyces cerevisiae]
gi|323337705|gb|EGA78950.1| Rrp46p [Saccharomyces cerevisiae Vin13]
Length = 256
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
+R D + + IL GS+ + DTKV+ +V GP + E P + ++E
Sbjct: 23 NRLDSAEKKKKMSVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALE 82
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----L 116
+I +P G EK E L+ L + P + Q++ D+ L
Sbjct: 83 IIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLREL 142
Query: 117 PCAINAACAALVDAGIPMKHLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
C INAA ALVDAGI + + +I ++ I+DPT E+ K+
Sbjct: 143 SCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTA-EQLKIS----------- 190
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
LSV V G + ++ ++G + D F LE G +L +RR +Q +
Sbjct: 191 LSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 250
>gi|118399581|ref|XP_001032115.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila]
gi|89286453|gb|EAR84452.1| 3' exoribonuclease family, domain 1 containing protein [Tetrahymena
thermophila SB210]
Length = 240
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + C GS QG T+++ + GP + + E+ +++
Sbjct: 12 REDGRKKNELRKVDCILGFDQTVEGSCKLIQGLTEIVCLIKGPHNKSTRRESEGFLNVQY 71
Query: 65 IWKPRTG----QIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
P +G +I K +K E+ L+ + +S+ + + +I+ V+ DG+
Sbjct: 72 NVAPFSGTDRRKISKFDKDWNEFTENLRVSFESVILTEQLGSGEIDIIVSVIQADGSAKS 131
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
NA AL+DAGIPMK V+ S S +LD T E++K
Sbjct: 132 SIFNAISLALMDAGIPMKDFTVSSTVISLNSE-ILLDATYQEQKK 175
>gi|126136733|ref|XP_001384890.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
gi|126092112|gb|ABN66861.1| Exosome complex exonuclease RRP46 (Ribosomal RNA processing protein
46) [Scheffersomyces stipitis CBS 6054]
Length = 226
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 18 ACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPE 77
+ + S+L ++ GSA G TKV+A+V GP + E P +AS+E++ +P G E
Sbjct: 3 SVNTSLLQKSDGSAELLLGSTKVIASVTGPIEPKARQELPNQASLEILIRPAVGLATTRE 62
Query: 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL------------LPCAINAACA 125
K E L+ LQSI + P V++Q + D L AIN
Sbjct: 63 KLLEDKLRSLLQSIIVRFKYPRQLIQVVVQFLISDSKRTETDLVDYTSNDLNAAINCCYY 122
Query: 126 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
AL+DAGI +K V++ + ++G ++PT E
Sbjct: 123 ALIDAGIALKASFVSL-SIAVKNGNLTVNPTVYE 155
>gi|429853450|gb|ELA28524.1| 3 exoribonuclease family protein [Colletotrichum gloeosporioides
Nara gc5]
Length = 570
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 83/183 (45%), Gaps = 21/183 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK------- 53
M + R DGR N+LR L A GS+ G TKV+ V GP ++
Sbjct: 314 MALLRVDGRRWNELRRLHAQIRTQEAADGSSYLEMGHTKVMCVVTGPSEPQRRGGAGGQT 373
Query: 54 -----NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N N A + + + G+ K +E E + + + + + P+++ S+ + V
Sbjct: 374 KDAAVNVNIVVAGFSSVDRRKRGRNDKRNQELEAAIAKAVAANLHTHLFPHSSISISLHV 433
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEE 160
+ DG+LL +NA+ AL+DAGIPM +A C + S Y +LD EE
Sbjct: 434 LSQDGSLLATLLNASTLALIDAGIPMTDY-IAACTAGSTSTYAAADDGADPLLDLNTQEE 492
Query: 161 QKM 163
Q++
Sbjct: 493 QEL 495
>gi|320581308|gb|EFW95529.1| exosome component Ski6p, putative [Ogataea parapolymorpha DL-1]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 16/174 (9%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-------KAGTKKNEN 56
R DGR N+LR C + + A GS+ QG++KVL V GP AGTK + N
Sbjct: 13 RVDGRRWNELRRFECQINTHPNAADGSSYVQQGNSKVLCLVKGPMEHGANLAAGTKLDPN 72
Query: 57 PEKASIEVIWKPRTGQIGKPE-------KEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
S+ + + P K +E IILKR +L T + + V+
Sbjct: 73 GPVLSLNINYPPFASNERKKRPKNDRRLQEISIILKRCFMKTIVLKNYSRTAIDINLTVL 132
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
DG LL C NA AL+DAGI + A+ + +LD LEE +
Sbjct: 133 AMDGGLLACFCNAITLALIDAGISLYDYVSAVSVGLYDQ-TPLLDMNALEENDL 185
>gi|448262636|pdb|4IFD|D Chain D, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 245
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
+R D + + IL GS+ + DTKV+ +V GP + E P + ++E
Sbjct: 12 NRLDSAEKKKKMSVQAEIGILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALE 71
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----L 116
+I +P G EK E L+ L + P + Q++ D+ L
Sbjct: 72 IIVRPAKGVATTREKVLEDKLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLREL 131
Query: 117 PCAINAACAALVDAGIPMKHLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
C INAA ALVDAGI + + +I ++ I+DPT E+ K+
Sbjct: 132 SCCINAAFLALVDAGIALNSMCASIPIAIIKDTSDIIVDPTA-EQLKIS----------- 179
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
LSV V G + ++ ++G + D F LE G +L +RR +Q +
Sbjct: 180 LSVHTLALEFVNGGKVVKNVLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 239
>gi|301099917|ref|XP_002899049.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
gi|262104361|gb|EEY62413.1| exosome complex exonuclease MTR3-like protein [Phytophthora
infestans T30-4]
Length = 252
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 11/159 (6%)
Query: 27 AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS---IEVIWKPRTGQIGKPEK----- 78
A GSA G T+VL AVYGP+ T+ K +V + P ++ + E+
Sbjct: 50 AAGSAYVELGRTRVLCAVYGPRTDTRARREFSKDGQLVCDVKYAPFADKLTRRERGQDPD 109
Query: 79 --EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
E I++ L +L P SV + ++ DDG +L A+N A AL DA + M
Sbjct: 110 EMELSAIVEEALAPAVMLHKLPKCIISVFVTILEDDGGVLAAALNCASLALADAAVEMYD 169
Query: 137 LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
+ A +G +LDP++ EEQ+ G L + S+
Sbjct: 170 VVTA-SSAGIVNGSVVLDPSREEEQRGDGKLALAYMPSM 207
>gi|224146058|ref|XP_002325864.1| predicted protein [Populus trichocarpa]
gi|222862739|gb|EEF00246.1| predicted protein [Populus trichocarpa]
Length = 730
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENP------ 57
R+DGR P+++RP+ C IL RAHGSA +++G+T+ LA V G K ++ +N
Sbjct: 380 RSDGRTPDRIRPIDSRCGILPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 439
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ ++ P G+IG P + + ++++R L+ I + T V +
Sbjct: 440 KRFYLQYLFPPSCVGEVGRIGAPSRREIGHGMLVERALKPILPSDDDFPYTVRVESTITE 499
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K + I
Sbjct: 500 SNGSSSMASVCGGCLALQDAGVPVKCMIAGIA 531
>gi|255076363|ref|XP_002501856.1| predicted protein [Micromonas sp. RCC299]
gi|226517120|gb|ACO63114.1| predicted protein [Micromonas sp. RCC299]
Length = 232
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 33/250 (13%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-- 58
M + R DGR+ Q+RP+ ++ +A GSA TKV+ VYGP+ G + E
Sbjct: 1 MTIPREDGRSAEQMRPIFVKTGVISQAAGSAYVELDKTKVMCGVYGPRQGGPGIDKVEFD 60
Query: 59 KASIEVIWK--------PRTGQI--GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ ++V K PR G++ G E+E+ I+ R L + P TT V V
Sbjct: 61 RGRLDVDVKLATFATSGPR-GKVAQGDAEREFSSIVHRALSGAVMTETFPKTTVDVFATV 119
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCILDPTKLEEQKMKGF 166
+ +G+ L I AA AAL +AG+ M+ L V+ C G +LDP + EE +
Sbjct: 120 LEANGSELCATIAAASAALCEAGVAMRDL-VSACTGGGADGPNALLLDPARGEEAAAEAG 178
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDF 226
L + + L E S ++ + T S+DD G A++
Sbjct: 179 VTLAY----MCRLGEASQ----------VVATGTWDGESLDDAVQLAASG---CARVDAA 221
Query: 227 LRRSLQSKLP 236
LR +L+S +P
Sbjct: 222 LREALRSSVP 231
>gi|365984727|ref|XP_003669196.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
gi|343767964|emb|CCD23953.1| hypothetical protein NDAI_0C02930 [Naumovozyma dairenensis CBS 421]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H + GS+ QG+ K++ V GPK T +++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHASDGSSYLEQGNNKIITLVKGPKEPTSRSQVDTNKALL 72
Query: 63 EVIWKPRTGQIGKPEK------------EYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ Q K E+ E + L RT + +L + P T + I V+
Sbjct: 73 RI--SVNITQFSKFERSKSSHRNERRVLEMQTALVRTFEKNVMLNLYPRTLIDIEIHVLQ 130
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
DG ++ +N AL+DAGI M I ++ +LD LEE M
Sbjct: 131 QDGGIMGSLLNGITLALIDAGIAMYDYISGISVGLYDT-TPLLDVNSLEETAM 182
>gi|443919506|gb|ELU39651.1| exosome component 4 [Rhizoctonia solani AG-1 IA]
Length = 296
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 96/221 (43%), Gaps = 28/221 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR +LR + S A GSA+ S G T V V+GP+ +++ +KA I
Sbjct: 13 RADGRKARELRSITIELSPHPTADGSATVSHGLTTVNVCVFGPREAKNRSQTMHDKALIN 72
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
V G +G + LK + C + N V+ Q DG +L AINAA
Sbjct: 73 VEISEAPGGVGT-----NVSLKADPRICCFYSRNIRARRPVLQQ----DGGVLQTAINAA 123
Query: 124 CAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
AL+DAGI + +C C+A +LD T EE + PN L+VLP
Sbjct: 124 TLALIDAGIALTDY---VCACTAACIDTTGLLDLTNTEESDL--------PNLTLAVLPR 172
Query: 182 GS--SLVQGEPMEH-GIITSVTHGAMSVDDYFHCLERGRAA 219
+LV E H + A+ D H ER RAA
Sbjct: 173 SKRVTLVTMETRLHVERFDQIFKLALLAGDILH--ERMRAA 211
>gi|365760507|gb|EHN02222.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840726|gb|EJT43427.1| SKI6-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHSHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>gi|350295872|gb|EGZ76849.1| ribosomal protein S5 domain 2-like protein [Neurospora tetrasperma
FGSC 2509]
Length = 273
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 28/197 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------------AGT 51
R DGR N+LR + A GS+ G TKV+ V GP G
Sbjct: 14 RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGG 73
Query: 52 KKNENPEKASIEVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
+++N E A VI + R G+ K E + + + L + + P++T ++
Sbjct: 74 GQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINIS 133
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTK 157
+ V+ DG+LL INAA A VDAGIPM VA C + S Y +LD
Sbjct: 134 LHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 158 LEEQKMKGFAYLVFPNS 174
EEQ++ G +S
Sbjct: 193 QEEQELPGLTVATLGDS 209
>gi|190406796|gb|EDV10063.1| exosome complex exonuclease RRP41 [Saccharomyces cerevisiae
RM11-1a]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>gi|448262634|pdb|4IFD|B Chain B, Crystal Structure Of An 11-subunit Eukaryotic Exosome
Complex Bound To Rna
Length = 248
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 15 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 74
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 75 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 134
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 135 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 184
>gi|294893125|ref|XP_002774343.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239879681|gb|EER06159.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--- 61
R DGR + +RP +L + GSA GDT+VL V GP +N P S
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPV----ENRFPLGVSTPG 81
Query: 62 --IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINP-NTTTSVIIQVVHDDGALLPC 118
++V + +G +K E L + + +I + P NT +V ++V+++DG+LL
Sbjct: 82 YPLDVTVRRASGMPTAEDKSVEYQLTKFINTIIDTHLLPGNTMVTVAVEVMNNDGSLLST 141
Query: 119 AINAACAALVDAG-IPMKHLAVAICCCSA--ESGYCIL-DPTKLEEQ 161
NAA AL+DAG IP++ A A G IL DP + EE+
Sbjct: 142 IFNAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEE 188
>gi|398366099|ref|NP_011711.3| Ski6p [Saccharomyces cerevisiae S288c]
gi|1176073|sp|P46948.1|RRP41_YEAST RecName: Full=Exosome complex component SKI6; AltName:
Full=Extracellular mutant protein 20; AltName:
Full=Ribosomal RNA-processing protein 41; AltName:
Full=Superkiller protein 6
gi|791127|emb|CAA58018.1| G7587 [Saccharomyces cerevisiae]
gi|1323347|emb|CAA97221.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270908|gb|AAS56835.1| YGR195W [Saccharomyces cerevisiae]
gi|151943471|gb|EDN61782.1| superkiller [Saccharomyces cerevisiae YJM789]
gi|207345003|gb|EDZ71963.1| YGR195Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271491|gb|EEU06540.1| Ski6p [Saccharomyces cerevisiae JAY291]
gi|259146697|emb|CAY79954.1| Ski6p [Saccharomyces cerevisiae EC1118]
gi|285812388|tpg|DAA08288.1| TPA: Ski6p [Saccharomyces cerevisiae S288c]
gi|323304789|gb|EGA58548.1| Ski6p [Saccharomyces cerevisiae FostersB]
gi|323333367|gb|EGA74763.1| Ski6p [Saccharomyces cerevisiae AWRI796]
gi|323337488|gb|EGA78736.1| Ski6p [Saccharomyces cerevisiae Vin13]
gi|323348458|gb|EGA82703.1| Ski6p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354862|gb|EGA86695.1| Ski6p [Saccharomyces cerevisiae VL3]
gi|349578400|dbj|GAA23566.1| K7_Ski6p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765457|gb|EHN06965.1| Ski6p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299448|gb|EIW10542.1| Ski6p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 246
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>gi|319411528|emb|CBQ73572.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 332
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 39/198 (19%)
Query: 11 PNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT 70
P LRPL+ L R+ SAS+S G V+A+V GP ++E ++A+++VI++P+
Sbjct: 14 PTALRPLSADLGTLARSDASASFSFGPVHVVASVSGPTEVRIRDELTDRATLDVIYQPQH 73
Query: 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII-------------QVVHDDGA--- 114
G G P + L S+ +L +P + V++ Q +H D A
Sbjct: 74 GVAGIPAQAESDSLFTAFSSVLLLHHHPRSLIQVVLQTLSSPSLPQSSAQTLHKDVASSQ 133
Query: 115 ---------LLP----------CAINAACAALVDAGIPMKHLAVAICCCS---AESGYCI 152
L P INAA AL+DAGIP + +VA C C+ A G +
Sbjct: 134 RHVPRQPLLLGPDSPPSVSEQAALINAASLALLDAGIPAR-ASVAACACAILPAAQGTVL 192
Query: 153 LDPTKLEEQKMKGFAYLV 170
+ + E A LV
Sbjct: 193 RQNSHVAEMSESQLAGLV 210
>gi|37362654|ref|NP_011609.2| Rrp46p [Saccharomyces cerevisiae S288c]
gi|118595829|sp|P53256.2|RRP46_YEAST RecName: Full=Exosome complex component RRP46; AltName:
Full=Ribosomal RNA-processing protein 46
gi|151943372|gb|EDN61685.1| 3'-5'-exoribonuclease [Saccharomyces cerevisiae YJM789]
gi|190406885|gb|EDV10152.1| 3'->5' exoribonuclease [Saccharomyces cerevisiae RM11-1a]
gi|207345132|gb|EDZ72051.1| YGR095Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269404|gb|EEU04701.1| Rrp46p [Saccharomyces cerevisiae JAY291]
gi|259146598|emb|CAY79855.1| Rrp46p [Saccharomyces cerevisiae EC1118]
gi|285812288|tpg|DAA08188.1| TPA: Rrp46p [Saccharomyces cerevisiae S288c]
gi|323348611|gb|EGA82855.1| Rrp46p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355041|gb|EGA86872.1| Rrp46p [Saccharomyces cerevisiae VL3]
gi|349578307|dbj|GAA23473.1| K7_Rrp46p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765690|gb|EHN07197.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299350|gb|EIW10444.1| Rrp46p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 223
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 20/221 (9%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL GS+ + DTKV+ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 ILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMK 135
L+ L + P + Q++ D+ L C INAA ALVDAGI +
Sbjct: 69 KLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALN 128
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I ++ I+DPT E+ K+ LSV V G +
Sbjct: 129 SMCASIPIAIIKDTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKN 176
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
++ ++G + D F LE G +L +RR +Q +
Sbjct: 177 VLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>gi|357508847|ref|XP_003624712.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
gi|355499727|gb|AES80930.1| Polyribonucleotide nucleotidyltransferase [Medicago truncatula]
Length = 734
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKKNEN------P 57
R+DGR PN++RP+ SC +L RAHGSA +++G+T+ LA A G ++ +N
Sbjct: 502 RSDGRTPNEIRPINSSCGLLPRAHGSALFTRGETQSLAVATLGDNKMAQRIDNLMDVDDY 561
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P G+IG P + + ++ +R+L++I + T V +
Sbjct: 562 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLETILPSDKDFPYTIRVESTITE 621
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 622 SNGSSSMASVCGGCLALQDAGVPIK 646
>gi|342876785|gb|EGU78342.1| hypothetical protein FOXB_11157 [Fusarium oxysporum Fo5176]
Length = 268
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 23/181 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R DGR N+LR L A GS+ G TKV+ V GP +
Sbjct: 14 RVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCIVTGPSEQQVQRRGGQQAPRDT 73
Query: 54 ---NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
N N A + + + G+ K +E E + S + P+++ ++ + V+
Sbjct: 74 AAINVNVVVAGFSSVDRKKRGRNDKRIQEIETTIANAFTSNLHTHLFPHSSITISLHVLS 133
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQK 162
DG+LL +NA AL+DAGIPM +A C + S Y +LD EEQ+
Sbjct: 134 QDGSLLAALLNATTLALIDAGIPMTDY-IAACTAGSTSTYAAGDDTADPLLDLNNQEEQE 192
Query: 163 M 163
+
Sbjct: 193 L 193
>gi|336275813|ref|XP_003352660.1| hypothetical protein SMAC_01493 [Sordaria macrospora k-hell]
gi|380094550|emb|CCC07930.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 273
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 85/197 (43%), Gaps = 28/197 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------------AGT 51
R DGR N+LR + A GS+ G TKV+ V GP G
Sbjct: 14 RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPSEPGPRRGATSGGGGGG 73
Query: 52 KKNENPEKASIEVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
+++N E A VI + R G+ K E + + + L + + P++T ++
Sbjct: 74 GQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINIS 133
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTK 157
+ V+ DG+LL INAA A VDAGIPM VA C + S Y +LD
Sbjct: 134 LHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 158 LEEQKMKGFAYLVFPNS 174
EEQ++ G +S
Sbjct: 193 QEEQELPGLTVATLGDS 209
>gi|308481633|ref|XP_003103021.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
gi|308260397|gb|EFP04350.1| CRE-EXOS-4.2 protein [Caenorhabditis remanei]
Length = 273
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME D + R+ RPL C + GS G+T+VLA + GP+ K E K
Sbjct: 56 METDDVEKRSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQITGPEGDGKWEEAYAKV 115
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+I + ++ + + + +L ++ + P + + V+ DDG +L AI
Sbjct: 116 TITLKGVENETKVAELRAD----MTSSLSAVIFVNKYPGKVIDIEVTVLSDDGGVLSTAI 171
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE-EQKMKGFAYLVFPN 173
A AL +GI L + ++G I DP+ E E + G + PN
Sbjct: 172 TAVTLALAHSGIEHMGLTASAHVTLRQNGDYITDPSTSEAEDAIGGVTFAFVPN 225
>gi|326473180|gb|EGD97189.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton tonsurans CBS 112818]
Length = 286
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A+ +
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAAQK- 72
Query: 65 IWKPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
K TG G + E L+ Q + P +T SV + V+ DG+L +N
Sbjct: 73 -KKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVSVLSSDGSLFAACLN 131
Query: 122 AACAALVDAGIPMKHLAVAICCCS 145
A ALVDAGIPM L +C C+
Sbjct: 132 ACTLALVDAGIPMPGL---LCACT 152
>gi|294889655|ref|XP_002772906.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
gi|239877486|gb|EER04722.1| Exosome complex exonuclease RRP46, putative [Perkinsus marinus ATCC
50983]
Length = 258
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 82/167 (49%), Gaps = 14/167 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--- 61
R DGR + +RP +L + GSA GDT+VL V GP +N P S
Sbjct: 26 RIDGRECSMMRPPTLELGLLPQKDGSARLGFGDTEVLVGVNGPV----ENRFPLGVSTPG 81
Query: 62 --IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINP-NTTTSVIIQVVHDDGALLPC 118
++V + +G +K E L + + +I + P NT +V ++V+++DG+LL
Sbjct: 82 YPLDVTVRRASGMPTAEDKSVEYQLTKFINTIIDAHLLPGNTMVTVAVEVMNNDGSLLST 141
Query: 119 AINAACAALVDAG-IPMKHLAVAICCCSA--ESGYCIL-DPTKLEEQ 161
NAA AL+DAG IP++ A A G IL DP + EE+
Sbjct: 142 IFNAAILALLDAGSIPLRGTAFAAALGKRYHRGGTQILVDPDQSEEE 188
>gi|291000756|ref|XP_002682945.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
gi|284096573|gb|EFC50201.1| 3'-5' exoribonuclease/RNA-binding protein-like protein [Naegleria
gruberi]
Length = 300
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 91/211 (43%), Gaps = 24/211 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWS-QGDTKVLAAVYGPKAGTKKNENPEKASIE 63
R D R ++ R + ++ +A GSA Q TKV+ +VYGP+ + +NE + +I+
Sbjct: 65 RQDNRTCDKFRNVFMQVGVIKQARGSAYMEYQNGTKVICSVYGPRQISARNEFSDIGAIQ 124
Query: 64 VIWKPRTGQIGKPEK-----------------EYEIILKRTLQSICILTINPNTTTSVII 106
++ E I L+ L+ L P + V
Sbjct: 125 CEYRVANFAYQSSNNQSTFLNNSSNNNRRHHVENSIHLREALEVSIRLDKYPKSVIDVYC 184
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG- 165
++ DDG+ L AI+ A AL +AGI M + V+ C S G+ I+DPT LE + G
Sbjct: 185 FILQDDGSALSAAISCASLALANAGIEMYDM-VSACTTSELEGHIIVDPTNLEYKYASGG 243
Query: 166 --FAYLVFPNSILSVLPEGSSLVQ--GEPME 192
AY+ N + + G Q GE M+
Sbjct: 244 MVCAYMSNLNQVTQLSQVGDMSYQKIGEAMD 274
>gi|46108418|ref|XP_381267.1| hypothetical protein FG01091.1 [Gibberella zeae PH-1]
Length = 250
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 108/257 (42%), Gaps = 54/257 (21%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
S+L ++ GSA++S G V+AAV GP +++EN +A ++VI +P G G E+
Sbjct: 9 AEISLLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRER 68
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
+ E I++ L+ + + P + + +QV + ++P +++A
Sbjct: 69 QLESIMQAALRQLIPVRDYPRSVIQITLQVAETPENAYVNAKIVQAQLNLPIIPALLHSA 128
Query: 124 CAALVDAGIPMKHLAVA--ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
L+ A IP+K + A I E I+DP+ ++ + K L F +
Sbjct: 129 ILGLLSAAIPLKTIGAATLIAVPEEEGKDIIVDPSAVDIDRAKSVHALAFTS-------- 180
Query: 182 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA-------------------SAK 222
++ S + GA + D++ L+ G+ S
Sbjct: 181 ----------HDELLLSESEGAFTPDEWTKVLQLGQRVCCEHQQPGLDTAMSGDDIESPS 230
Query: 223 LSDFLRRSLQSKLPGDL 239
+ F+R ++ +K+ DL
Sbjct: 231 MRQFIRSAMGTKVAEDL 247
>gi|409048701|gb|EKM58179.1| hypothetical protein PHACADRAFT_88763 [Phanerochaete carnosa
HHB-10118-sp]
Length = 290
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 101/228 (44%), Gaps = 29/228 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ ++LRP+ L R GSA + G T+ LA++ GP E P +A++E+
Sbjct: 7 RHDGRDNDELRPVTIKYEGLDRVDGSAKFGFGQTQALASLSGPIEIRPNLELPSQATLEI 66
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV--------------H 110
+P G + LK L +L+ +P T ++ Q +
Sbjct: 67 HIRPLASVPGTDSRALAATLKAVLSPSLLLSHHPRTLVQIVGQALCGSDSGSGLGSTGRG 126
Query: 111 DDGALLPCAINAACAALVDAG-IPMKHLAVAICCCSA-------ESG--YCILDPTKLEE 160
+ +L+ +NA A+L++AG +P+K + +C S +SG +LDP++ E
Sbjct: 127 WNASLVASLVNACSASLINAGSVPIKGV---VCAASVGRIPDLNDSGSYVLVLDPSEAEL 183
Query: 161 QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDD 208
++G VF S LP Q P + T+ T + +DD
Sbjct: 184 ASLEGGGCFVF--MFASTLPPSPDDDQDTPHTSLLWTNYTATSGVIDD 229
>gi|348674314|gb|EGZ14133.1| hypothetical protein PHYSODRAFT_512336 [Phytophthora sojae]
Length = 252
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 12/183 (6%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS- 61
+D+ G + RP + A GSA G T+V+ AVYGP+ T+ K
Sbjct: 27 LDKTRGSSDEMRRPF-MQLGAVSGAAGSAYVEMGRTRVVCAVYGPRTDTRARREFSKDGQ 85
Query: 62 --IEVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+V + P ++ + E+ E I++ L +L P SV + V+ D+
Sbjct: 86 LVCDVKYAPFADKLTRRERGQDPDEMELSAIVEEALAPAVMLHKLPKCIVSVFVTVLEDE 145
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G + AIN A AL DA + M + A +G +LDP++ EEQ+ G L +
Sbjct: 146 GGVFAAAINCASLALADAAVEMYDVVTA-SSAGIVNGSVVLDPSREEEQRGDGKLALAYM 204
Query: 173 NSI 175
S+
Sbjct: 205 PSM 207
>gi|328850748|gb|EGF99909.1| hypothetical protein MELLADRAFT_68249 [Melampsora larici-populina
98AG31]
Length = 271
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 95/209 (45%), Gaps = 32/209 (15%)
Query: 5 RADGRNPNQLRPLACSC--SILHRAHGSASWSQGDTKVLAAVYGPKAGTK---------- 52
R D R P +LR L S + GS+ S G TKV ++V GPK T
Sbjct: 13 RQDNRRPYELRQLDFKILKSSPNSLDGSSIVSHGLTKVTSSVSGPKEITSSSSSNHKSNL 72
Query: 53 KNENPEKASIEVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 103
K+ SI+V + + ++ K + ++ T +S+ +L + P +
Sbjct: 73 KSHTNNVGSIQVYVNMTNFSQSDRKKLSKVDKRLMDLSFSIQNTFESVIMLKLYPRSLIE 132
Query: 104 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES-GYCILDPTKLEEQK 162
+ I+V+ +DG LL AINA +L+ +GI ++ +AI S + +LD T LE+
Sbjct: 133 IFIEVLQEDGGLLQAAINATSLSLIASGISIQDYILAISIGSLSNPNLPLLDVTNLEQ-- 190
Query: 163 MKGFAYLVFPNSILSVLPEGS--SLVQGE 189
L P+ ++ LP S SL+Q E
Sbjct: 191 ------LDLPSLTIASLPRSSKISLIQVE 213
>gi|266618485|pdb|2WP8|B Chain B, Yeast Rrp44 Nuclease
Length = 246
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNINKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>gi|358399876|gb|EHK49213.1| hypothetical protein TRIATDRAFT_49744 [Trichoderma atroviride IMI
206040]
Length = 274
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 29/187 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNE------ 55
R DGR N LR L A GS+ G TKV+ V GP +AG KK
Sbjct: 14 RIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQKKGTVGSAQA 73
Query: 56 --NPEKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSV 104
E ASI V + + R G+ + +E EI +++ L + + P++T +V
Sbjct: 74 TGQKEGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHTHLFPHSTITV 133
Query: 105 IIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPT 156
+ V+ DG+LL INA A++DAGIPM A C + S Y +LD
Sbjct: 134 SLHVLSQDGSLLAALINATTLAVIDAGIPMTDYITA-CTAGSTSSYAAGDDAADPLLDLN 192
Query: 157 KLEEQKM 163
EEQ++
Sbjct: 193 TQEEQEL 199
>gi|401827619|ref|XP_003888102.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
gi|392999302|gb|AFM99121.1| RNase PH-like protein [Encephalitozoon hellem ATCC 50504]
Length = 188
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK-PEKEY 80
S++ GS+ +S +T V V+GP T + E+PEKA ++V WK G+ +K +
Sbjct: 9 SVIPHCTGSSRFSYNNTTVFCTVHGPSDATSRQEDPEKAFLDVRWKDMILINGRIYDKYF 68
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+++R L IL ++ T V VV + L CA+NAA AL D GIP+K + A
Sbjct: 69 SKVIERVLSKNIILELDACRTIQVGFNVVGETRNALFCAVNAALLALADGGIPLKSMFYA 128
Query: 141 ICCCSAESGYCILD 154
E I D
Sbjct: 129 SSSFMHEEEVIIFD 142
>gi|357625820|gb|EHJ76127.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 306
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R GR ++ R L ++ +A GS+ TKV +V+ P+ +NE +
Sbjct: 42 RKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYC 101
Query: 63 EVIWKP------RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
EV + P R + E+ + LK+ L+ + PN + I ++ +DGA
Sbjct: 102 EVKYAPFSCRGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGAC 161
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
LP AINAA AL DA +PM + A + +DPT EEQ
Sbjct: 162 LPAAINAAGLALSDAAVPMYDIITA-SSLAISGDKVFVDPTDDEEQ 206
>gi|396082222|gb|AFN83832.1| exosome RNAse PH-like protein [Encephalitozoon romaleae SJ-2008]
Length = 188
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 29 GSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK-PEKEYEIILKRT 87
GS+ +S +T V V+GP ++E+PEKA ++V WK G+ +K + +++R
Sbjct: 16 GSSRFSYNNTTVFCIVHGPSDAISRHEDPEKAFLDVRWKDMVLINGRIYDKYFSRVVERV 75
Query: 88 LQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147
+ IL ++ T +I VV + L CA+NAA AL D GIP+K + A + E
Sbjct: 76 ISKNIILELDAWKTIQIIFNVVGEARNALFCAVNAALLALADGGIPLKSMFYASSSFTNE 135
Query: 148 SGYCILD 154
+ D
Sbjct: 136 EEVVVFD 142
>gi|71018123|ref|XP_759292.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
gi|46099142|gb|EAK84375.1| hypothetical protein UM03145.1 [Ustilago maydis 521]
Length = 332
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 39/199 (19%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR 69
+P LR L+ IL R+ SAS+S G V+A+V GP ++E ++A+++VI++P+
Sbjct: 18 SPTALRSLSAEFGILARSDASASFSFGPVNVVASVSGPTEVRIRDELTDRATLDVIYQPQ 77
Query: 70 TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH-----------------DD 112
G G P + L S+ +L +P + +++Q + D+
Sbjct: 78 HGVAGIPARAVSDALTTAFSSVLLLHHHPRSLIQLVLQTLSSPSLPQSAGQPLQTDTGDN 137
Query: 113 GALLP------------------CAINAACAALVDAGIPMKHLAVAICCCS---AESGYC 151
+P INAA AL+DAGIP + +VA C C+ A G
Sbjct: 138 HRHVPRQPLLLGPDVPPSATEQAALINAASLALLDAGIPAR-ASVAACACAILPATQGLV 196
Query: 152 ILDPTKLEEQKMKGFAYLV 170
+ + + E A LV
Sbjct: 197 LRQNSHITEMSQSQLAGLV 215
>gi|380015549|ref|XP_003691763.1| PREDICTED: exosome complex component RRP41-like [Apis florea]
Length = 271
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENPEKAS 61
R DGR +LR + + +A GSA G+TK+L VYGP + T ++ +
Sbjct: 14 RLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKVTKG 73
Query: 62 I---------------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII 106
I E KPR + +E + LK +++I L + P + + +
Sbjct: 74 IVNCQYSMAVFSLSSGERKRKPRGD---RKSQERSLQLKHAMEAIIHLELYPRSQIDIYV 130
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+ + DG+ ++NAA AL+DAGIP+K+ A+
Sbjct: 131 EALQVDGSEYCASVNAATLALIDAGIPIKNYAIG 164
>gi|388854473|emb|CCF51860.1| uncharacterized protein [Ustilago hordei]
Length = 328
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 36/171 (21%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR 69
+P LRPL+ L RA SAS+S G V+A+V GP ++E ++A+++VI++P+
Sbjct: 18 SPTALRPLSAQLGTLARADASASFSFGPLNVVASVSGPTEVRIRDELTDRATLDVIFQPQ 77
Query: 70 TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII-------------QVVHDD---- 112
G G + L S+ +L P + V++ QVVH D
Sbjct: 78 HGVAGIASQAVSDSLFTAFSSVLLLHHYPRSLIQVVLQTLSCPTLPQTSAQVVHSDVQAS 137
Query: 113 ------------------GALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
+ L INAA AL+DAGIP + +VA C C+
Sbjct: 138 QRVVARQPLLLGPDKPPSVSELAALINAASLALLDAGIPARG-SVAACACA 187
>gi|336463800|gb|EGO52040.1| hypothetical protein NEUTE1DRAFT_89939 [Neurospora tetrasperma FGSC
2508]
Length = 273
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 85/197 (43%), Gaps = 28/197 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-------------AGT 51
R DGR N+LR + A GS+ G TKV+ + GP G
Sbjct: 14 RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVINGPSEPGPRRGATSGGGGGG 73
Query: 52 KKNENPEKASIEVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
+++N E A VI + R G+ K E + + + L + + P++T ++
Sbjct: 74 GQSKNAEVAVNIVIAGFSSVDRKRRGRGDKHILELQSTISQALAASLHTHLFPHSTINIS 133
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTK 157
+ V+ DG+LL INAA A VDAGIPM VA C + S Y +LD
Sbjct: 134 LHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLLDMNH 192
Query: 158 LEEQKMKGFAYLVFPNS 174
EEQ++ G +S
Sbjct: 193 QEEQELPGLTVATLGDS 209
>gi|296423938|ref|XP_002841509.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637749|emb|CAZ85700.1| unnamed protein product [Tuber melanosporum]
Length = 204
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 27 AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKR 86
A GSA ++ G T +LA++ GP ++E P +A +E+ +P G EK E +L+
Sbjct: 2 ADGSAQYTDGPTTLLASINGPIEVKPRDEIPLEAYLEITIRPSAGVTSVREKHLEALLRS 61
Query: 87 TLQSICILTINPNTTTSVIIQVVHDDGA--------LLPCAINAACAALVDAGIPMKHLA 138
+ + I T P T + +QV+ + A LL AI ALVDAG+PM+ +
Sbjct: 62 AISPLIIRTAYPRTLLQITLQVIQHEQASMAYALHTLLTSAIVVVMLALVDAGVPMRGML 121
Query: 139 VA 140
A
Sbjct: 122 AA 123
>gi|307104174|gb|EFN52429.1| hypothetical protein CHLNCDRAFT_12102, partial [Chlorella
variabilis]
Length = 241
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P +LR L +L A GSA + G+T+VLAAV+GPK ++++ E+ +I
Sbjct: 9 RLDGRRPKELRQLRAELGVLSSADGSALFEMGNTRVLAAVFGPKPVEQRSQEDERRAIVK 68
Query: 63 --EVIWKPRTGQIGKPE------KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ TG+ + E + ++ T++ + + P + + +QV+ DG
Sbjct: 69 CEYAMASFSTGERRRRGKADRRATEIGMAIRNTMEQTILTELLPRSQIDIYVQVLQADGG 128
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAAC A A IPM+ L VA C +LD +E+
Sbjct: 129 TRCACINAACMAAAAAAIPMRDL-VASCAAGYLESTALLDLNYMED 173
>gi|401625567|gb|EJS43567.1| ski6p [Saccharomyces arboricola H-6]
Length = 246
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYLEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITRFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGTLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>gi|328777661|ref|XP_003249381.1| PREDICTED: exosome complex exonuclease RRP41-like isoform 1 [Apis
mellifera]
Length = 284
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 73/154 (47%), Gaps = 21/154 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNENPEKAS 61
R DGR +LR + + +A GSA G+TK+L VYGP + T ++ +
Sbjct: 30 RLDGRRALELRQIRIKMGVFGQADGSAYIEHGNTKILVTVYGPHQPRNSTGRSTSKITKG 89
Query: 62 I---------------EVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII 106
I E KPR + +E + LK +++I L + P + + +
Sbjct: 90 IVNCQYSMAVFSLSSGERKRKPRGD---RKSQERSLQLKHAMEAIIHLELYPRSQIDIYV 146
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+ + DG+ ++NAA AL+DAGIP+K+ A+
Sbjct: 147 EALQVDGSEYCASVNAATLALIDAGIPIKNYAIG 180
>gi|299750699|ref|XP_001829767.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
gi|298409029|gb|EAU91989.2| exosome component Rrp46 [Coprinopsis cinerea okayama7#130]
Length = 238
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R+ N Q RPL L+R GSA + G++ LA+V GP E +A+ EV +
Sbjct: 8 RSSNEQFRPLHIVYDGLNRVDGSARFGFGNSAALASVSGPIEVRLAAEQSSQATFEVHVR 67
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD-------DGALLPCAI 120
P + K +++ L ILT NP T +++Q + DG L I
Sbjct: 68 PFSNVPATDSKSQATVIRSALTPSLILTKNPRTLVQLVVQNLSSASTNTERDG-LTAAMI 126
Query: 121 NAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
NA+ AL++AG +PM+ + A+ +G ++DPT E + +
Sbjct: 127 NASTLALLNAGSLPMRGVVCAVAVGRTSNGEFLVDPTAEEAKDI 170
>gi|2286200|gb|AAC50039.1| polynucleotide phosphorylase [Pisum sativum]
Length = 897
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 77/145 (53%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKKNEN------P 57
R+DGR P ++RP+ SCSIL RAHGSA +++G+T+ LA A G ++ N
Sbjct: 444 RSDGRTPKEIRPINSSCSILPRAHGSALFTRGETQALAVATLGDNKMAQRINNLIEVDDY 503
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P G+IG P + + ++ +R+L++I + T V +
Sbjct: 504 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITE 563
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 564 SNGSSSMASVCGGCLALQDAGVPIK 588
>gi|357622504|gb|EHJ73955.1| mRNA transport regulator 3 [Danaus plexippus]
Length = 548
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R GR ++ R L ++ +A GS+ TKV +V+ P+ +NE +
Sbjct: 42 RKGGREMDEARTLFARTGMISQAKGSSYIELKRTKVACSVFDPREIVHQNEYSTLGQLYC 101
Query: 63 EVIWKP------RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
EV + P R + E+ + LK+ L+ + PN + I ++ +DGA
Sbjct: 102 EVKYAPFSCRGERKALVPDSDERALSVALKKALEPAVCRHLFPNYQIDIFIYILENDGAC 161
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
LP AINAA AL DA +PM + A + +DPT EEQ
Sbjct: 162 LPAAINAAGLALSDAAVPMYDIITA-SSLAISGDKVFVDPTDDEEQ 206
>gi|150951278|ref|XP_001387575.2| predicted protein [Scheffersomyces stipitis CBS 6054]
gi|149388461|gb|EAZ63552.2| 3'->5' exoribonuclease [Scheffersomyces stipitis CBS 6054]
Length = 241
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 79/181 (43%), Gaps = 12/181 (6%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N++R C + + + GS+ QG+TKV+ V GP + + N +A++
Sbjct: 10 RIDGRRWNEIRNFECRINTHPNSSDGSSYIEQGNTKVICVVQGPMEPALRSQANSNEATL 69
Query: 63 EV------IWKPRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV + K EK + + L+RT Q + + P T + + V+ DG
Sbjct: 70 EVNLSVANFSTTERKKRSKSEKRMVQLKTTLERTFQQSVMCNLYPRTLIRIDLHVLSQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+L NA AL+DAG+ M + VA +LD LEE M V
Sbjct: 130 GMLAACTNAMTLALIDAGVSM-YDYVAAMTAGLHDQTPLLDMNGLEENDMSTLTIGVIGK 188
Query: 174 S 174
S
Sbjct: 189 S 189
>gi|380492438|emb|CCF34604.1| exosome complex subunit Rrp46 [Colletotrichum higginsianum]
Length = 243
Score = 67.0 bits (162), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 16/166 (9%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 81
S L RA GSA++S+ V+++V GP +++ENP ++ ++V+ +P G G E++ E
Sbjct: 12 SHLPRADGSATFSRNGYCVVSSVNGPMEVQRRDENPFESVVDVVVRPAAGVGGTAERQLE 71
Query: 82 IILKRTLQSICILTINPNTTTSVIIQVV---HDDGA------------LLPCAINAACAA 126
+L+ +L+ + + P + +QV +D A LLP ++A
Sbjct: 72 NVLQSSLRQLVPVKSFPRCLIQITLQVTETPQNDYANSKIVQAQSSLPLLPALFHSAILG 131
Query: 127 LVDAGIPMKHLAVAICCCSAESGYCIL-DPTKLEEQKMKGFAYLVF 171
L+ A +P+K +A E+G I+ DP+ LE + L F
Sbjct: 132 LLSAAVPLKGIATCTTLAVLENGSKIVADPSPLEVDQATSLHVLSF 177
>gi|297853206|ref|XP_002894484.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
gi|297340326|gb|EFH70743.1| hypothetical protein ARALYDRAFT_474556 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 38/43 (88%)
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ K E+EY+ ILKRTLQSIC+LT+ PN+TTSVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQSICVLTVVPNSTTSVIIQVVHDGGSV 91
>gi|425769344|gb|EKV07839.1| Exosome complex component ski6 [Penicillium digitatum Pd1]
gi|425771116|gb|EKV09570.1| Exosome complex component ski6 [Penicillium digitatum PHI26]
Length = 508
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 72/157 (45%), Gaps = 18/157 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-----KAGTKKNENPEK 59
R DGR N+LR L S + GS+ S G+T ++ +V+GP G
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTSIMCSVHGPAEGRRGDGGGGAAGSGH 74
Query: 60 ASIEVI----------WKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
A +EV K R G + L+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNVAGFAGVDRKRRAGGSDRQSSRIATTLRSAFQSHLHTYLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG+LL AINA ALVDAGIPM L +C C+A
Sbjct: 135 SADGSLLAAAINACTLALVDAGIPMPGL---LCGCTA 168
>gi|156086228|ref|XP_001610523.1| exosome complex exonuclease rrp41 [Babesia bovis T2Bo]
gi|154797776|gb|EDO06955.1| exosome complex exonuclease rrp41, putative [Babesia bovis]
Length = 259
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 5 RADGRNPNQLRPL------ACSCSILHRAHGSASWSQGDTKVLAAVYGP--------KAG 50
R DGR P+++R + C I++ G A +QG TKV A + GP K G
Sbjct: 13 RIDGRRPSEVRHIDILCGPECGVDIINY-DGVAQVTQGLTKVQAFINGPTDIGRSKTKEG 71
Query: 51 TKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKR----TLQSICILTINPNTTTSVII 106
+ ++P + EV +G + + + R T + + I + N+T + +
Sbjct: 72 FETADSPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKNSTIHIFV 131
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
V+ DG + INA AL+DAGI MK + VA C + ++DP +LE
Sbjct: 132 NVLEADGGVKATVINAVLIALIDAGIAMKDIIVA-CTAVMLNETLLIDPNQLE 183
>gi|340521310|gb|EGR51545.1| predicted protein [Trichoderma reesei QM6a]
Length = 248
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+ P A S L +A GSA++S G + AAV GP +++ENP +A ++V +P G
Sbjct: 1 MAPPAAELSHLPKADGSANFSFGGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVG 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPC 118
G E++ E IL+ L+ + + P V +QV+ + ++P
Sbjct: 61 GTAERQLEAILQPALRHLIAIRNFPRCVVQVTLQVMEAPENAYVNSKVMQPRLNLGIIPS 120
Query: 119 AINAACAALVDAGIPMKHLAVAIC--CCSAESGYCI-LDPTKLEEQKMKGFAYLVF 171
++AA L+ A IP+ +A A C +A +G I +DP+ E + L F
Sbjct: 121 LLHAAMLGLLTAAIPLNTVASATCLAVTNATAGSTIKVDPSPTEIDQATSVHVLGF 176
>gi|297824101|ref|XP_002879933.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325772|gb|EFH56192.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 138
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 39/46 (84%), Gaps = 1/46 (2%)
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL-LPCAIN 121
E+EYE ILKRTLQSIC+LT+ PN TTSVIIQVVHD G++ C+++
Sbjct: 78 EREYETILKRTLQSICVLTVVPNITTSVIIQVVHDGGSVSFLCSLD 123
>gi|302667165|ref|XP_003025173.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
gi|291189263|gb|EFE44562.1| hypothetical protein TRV_00655 [Trichophyton verrucosum HKI 0517]
Length = 302
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--I 62
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A I
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVI 73
Query: 63 EVIW------------KPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V+ K TG G + E +L+ Q + P +T SV +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L +NA ALVDAGIPM L +C C+
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGL---LCACT 168
>gi|47210411|emb|CAF91679.1| unnamed protein product [Tetraodon nigroviridis]
Length = 276
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 12/164 (7%)
Query: 8 GRNPNQ--LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA---SI 62
GR Q +RP+ C + +A GSA G TK+L VYGP+ +K+E + +
Sbjct: 37 GRQREQADVRPVFVRCGLGSQAKGSAYMEAGATKLLCCVYGPRETERKDETDMRCGRLTA 96
Query: 63 EVIWKP-----RTGQI-GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+V + P R I G ++++ +L +LQ L P + V + V+ + G++L
Sbjct: 97 DVRFAPFSCPERGSWIQGSQDRDFSSMLLESLQPAVCLHRYPRSQIEVHLVVLENGGSVL 156
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ A AL DAGI M L + C + + DPT EE
Sbjct: 157 AHAVTCASVALADAGIQMYDLVLG-CSLRQDGASFVADPTYAEE 199
>gi|85112835|ref|XP_964421.1| hypothetical protein NCU03268 [Neurospora crassa OR74A]
gi|28926202|gb|EAA35185.1| predicted protein [Neurospora crassa OR74A]
Length = 251
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 20/241 (8%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
S + L RA GSA +S V A+V GP +++E+ +A ++VI +P G G E+
Sbjct: 8 ASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRER 67
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E IL+ +L I ++ P + +++QV + ++P A
Sbjct: 68 HLEFILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQTA 127
Query: 124 CAALVDAGIPMKHLAVAICCCSAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSV 178
AL+ A +PMK A + S + DP+ + ++ L F + +L
Sbjct: 128 VLALLSAAVPMKATATSTVVAVVSDDGSKKIVADPSPQDIREATSLHVLAFTSHDELLLS 187
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
EG V+ + + S D + A+S + FLR +L++K+ D
Sbjct: 188 ESEGDFTVKEWDGVYENAQKICCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASD 247
Query: 239 L 239
L
Sbjct: 248 L 248
>gi|384439796|ref|YP_005654520.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
gi|359290929|gb|AEV16446.1| Polyribonucleotide nucleotidyltransferase [Thermus sp. CCB_US3_UF1]
Length = 714
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 19/150 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 325 EGKRADGRGPRDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQIIDDL 381
Query: 57 ----PEKASIEVIWKP-RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P TG+ + + E + + KR L+++ + T V+
Sbjct: 382 GIDETEKFLVHYNFPPFSTGEVKRLRGVSRREVGHGNLAKRALKAVMPKEADFPYTVRVV 441
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMK 135
V+ +G+ + A C AL+DAG+P+K
Sbjct: 442 GDVLESNGSSSMATVCAGCLALMDAGVPLK 471
>gi|341891925|gb|EGT47860.1| CBN-EXOS-4.2 protein [Caenorhabditis brenneri]
Length = 240
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME D R+ RPL C + GS G+T+VLA + GP K E+ K
Sbjct: 23 MEAIEMDKRSATTFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQIIGPDGDGKWEEDHAKI 82
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
++ + QI EY L + S+ + P + + V+ DDG +L A+
Sbjct: 83 TVTLKGLENEKQIA----EYRAELMSSASSVIFINKYPGKVIEIEVTVLSDDGGVLSAAL 138
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE-QKMKGFAYLVFPN 173
+A AL +GI L ++ + I DP+ E + G + PN
Sbjct: 139 SAVTLALAHSGIEHMGLTASVHVGMRANEDYITDPSTSESADTLGGVTFAFVPN 192
>gi|358386690|gb|EHK24285.1| hypothetical protein TRIVIDRAFT_31322 [Trichoderma virens Gv29-8]
Length = 275
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 30/188 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNE------ 55
R DGR N LR L A GS+ G TKV+ V GP +AG +K
Sbjct: 14 RIDGRRWNDLRRLHAQIHTQDAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTGGGGQ 73
Query: 56 ------------NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTS 103
N A + + R G+ + +E EI +++ L + + + P++T +
Sbjct: 74 AGGQKDGASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAANLHVHLFPHSTIT 133
Query: 104 VIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDP 155
V + V+ DG+LL INA AL+DAGIPM A C + S Y +LD
Sbjct: 134 VSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITA-CTAGSTSSYAAGDDSADPLLDL 192
Query: 156 TKLEEQKM 163
EEQ++
Sbjct: 193 NTQEEQEL 200
>gi|443897888|dbj|GAC75227.1| hypothetical protein PANT_14d00095 [Pseudozyma antarctica T-34]
Length = 348
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 10 NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR 69
+P LRPL+ +L R+ SAS+S G V+A+V GP ++E ++A+++V+++P+
Sbjct: 27 SPTALRPLSAEVGLLARSDASASFSFGALNVVASVSGPTEVRVRDELTDRATLDVVFQPQ 86
Query: 70 TGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV--------------------- 108
G G P + L L S+ +L +P + +++Q
Sbjct: 87 HGVAGIPSQAVSDSLLTALSSVLLLHHHPRSLIQLVLQTLCSPSLPQSSEHTLPSDLASN 146
Query: 109 ------------------VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS---AE 147
V + AL INAA AL+DAGIP + +V C C+ A
Sbjct: 147 QRYVPRQPLLLGPDAPPSVTEQAAL----INAASLALLDAGIPARG-SVTACACAILPAT 201
Query: 148 SGYCILDPTKLEEQKMKGFAYLV 170
G + + L+E A LV
Sbjct: 202 QGTVLRQNSHLDEISESQLAGLV 224
>gi|350296389|gb|EGZ77366.1| hypothetical protein NEUTE2DRAFT_100177 [Neurospora tetrasperma
FGSC 2509]
Length = 251
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 101/241 (41%), Gaps = 20/241 (8%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
S + L RA GSA +S V A+V GP +++E+ +A ++VI +P G G E+
Sbjct: 8 ASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRER 67
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E IL+ +L I ++ P + +++QV + ++P A
Sbjct: 68 HLEFILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALFQTA 127
Query: 124 CAALVDAGIPMKHLAVAICCCSAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSV 178
AL+ A +PMK A + S + DP+ + ++ L F + +L
Sbjct: 128 ILALLSAAVPMKATATSTVVAVVSDDGSKKIVADPSPKDIREATSLHVLAFTSHDELLLS 187
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
EG V+ + + S D + A+S + FLR +L++K+ D
Sbjct: 188 ESEGDFTVKEWDGVYENAQKICCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASD 247
Query: 239 L 239
L
Sbjct: 248 L 248
>gi|403214056|emb|CCK68557.1| hypothetical protein KNAG_0B01100 [Kazachstania naganishii CBS
8797]
Length = 222
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L + GSA + T +L +V GP + E P + ++EVI +P G E E +
Sbjct: 8 LDQVDGSAHYKTDTTALLCSVTGPIEPKPRQELPTRMALEVIVRPALGVPLTREVEIQDK 67
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVH--------DDGALLPCAINAACAALVDAGIPMK 135
L L SI ++ P + Q++ D L+ C +NAA AL+DAGI M
Sbjct: 68 LNSILGSIIVVHRYPRQLCQITFQILESGEDPHLFDSKELVAC-VNAATLALIDAGIAMN 126
Query: 136 HLAV--AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEH 193
LA+ I G I+DPT +EQ + +S++ L +GS +V +
Sbjct: 127 SLAIGCVIAVLPESDGKHIIDPT--DEQLRNAISV----HSLVLQLVDGSKVV------N 174
Query: 194 GIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 241
++ ++G + F LE G + R+ +Q ++ + K
Sbjct: 175 NVLLLDSYGDFTEKILFEVLELGEKYILNKAQDFRKLIQERIEASILK 222
>gi|395526107|ref|XP_003765212.1| PREDICTED: exosome complex component RRP46-like [Sarcophilus
harrisii]
Length = 191
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LL C +NAAC ALVDAG+PM+ L + C G ILDPT +E++ + A L F
Sbjct: 85 LLACCLNAACLALVDAGVPMRALFCGVTCALDPDGALILDPTAKQEKEAR--AILTFAL- 141
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ E ++ S T G SV ++ CL + AS + F R SLQ +
Sbjct: 142 --------------DSTEQKLLMSTTKGLYSVAEFQQCLAAAQHASHHIFRFYRDSLQRR 187
>gi|358379900|gb|EHK17579.1| hypothetical protein TRIVIDRAFT_43493 [Trichoderma virens Gv29-8]
Length = 247
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 17/175 (9%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+ P S L +A GSA+++ G + AAV GP +++ENP +A ++V +P G
Sbjct: 1 MAPPTAELSHLPKADGSANFAFGGYTITAAVNGPVEAQRRDENPFEALVDVNVRPAAGVG 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPC 118
G E++ E IL+ L+ + + P V +QV+ + ++P
Sbjct: 61 GTAERQLEAILQPALRHLIPVRNFPRCVIQVTLQVMEAPENAYVNAKVLQPRLNLGIIPA 120
Query: 119 AINAACAALVDAGIPMKHLAVAICCC--SAESGYCILDPTKLEEQKMKGFAYLVF 171
++AA L+ A IP+K +A A C +A+ +DPT E + + L F
Sbjct: 121 LLHAAILGLLTATIPLKTVASATCLAITNADGSTVKVDPTPAEIDQARSVHVLGF 175
>gi|402080799|gb|EJT75944.1| exosome complex exonuclease RRP41 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 286
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 100/255 (39%), Gaps = 44/255 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGT------------- 51
R DGR N+LR A GS+ G+TKV+ V GP T
Sbjct: 14 RIDGRRWNELRRCHAQIRTQAAADGSSYLEMGNTKVMCVVTGPSEPTPGQRRTAGNVTAT 73
Query: 52 -------------KKNENPEK------ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 92
++++ E A + + R + K +E + L R L S
Sbjct: 74 GAGGGGGGGGGGAGQSKDAEVVVSIFVAGFSSVDRKRRARSDKRIQELQATLSRALASTL 133
Query: 93 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC- 151
+ P++T + + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 134 HTHLFPHSTITFSLHVLAQDGSLLAALINAASLAAVDAGIPMIDY-VAACTAGSTSSYAA 192
Query: 152 -------ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 204
+LD EE ++ G +S V+ S VQ +E G++ G
Sbjct: 193 GDDSADPLLDLNHQEETELPGLTVATLGSSDRVVVLNCESRVQASRLE-GMLAVAVDGCK 251
Query: 205 SVDDYFHCL--ERGR 217
+ + + ERGR
Sbjct: 252 QMREILDRVVRERGR 266
>gi|303282535|ref|XP_003060559.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458030|gb|EEH55328.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 137
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%)
Query: 40 VLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 99
V AAVYGP ++ +K IEV+ +P +G +KE E+ ++R L+ + +P
Sbjct: 5 VYAAVYGPMEIRAGKQDTDKLVIEVVVRPASGAPSSADKEREVTIRRALEHVVKTAAHPR 64
Query: 100 TTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
V++Q V DG + +NAACAAL+DA +
Sbjct: 65 CGIRVVLQTVSSDGGIDAILLNAACAALIDASV 97
>gi|401625679|gb|EJS43677.1| rrp46p [Saccharomyces arboricola H-6]
Length = 223
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 92/221 (41%), Gaps = 20/221 (9%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL GS+ + DTK++ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 ILDHVDGSSQFVSQDTKIICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKLLED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMK 135
L+ L I P + Q++ D+ L C INAA LVDAGI M
Sbjct: 69 KLRAVLTPIITRYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMN 128
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I S I++PT E+ K+ LSV G +
Sbjct: 129 SMCASIPIAIMKNSNEIIINPTA-EQLKIS-----------LSVHTLALEFTDGGKVVKN 176
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
++ ++G + D F LE G +L LR+ +Q ++
Sbjct: 177 VLLLDSNGDFNEDQLFKVLESGEQKCQELVKNLRKIIQDEI 217
>gi|297790686|ref|XP_002863228.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
gi|297309062|gb|EFH39487.1| hypothetical protein ARALYDRAFT_497144 [Arabidopsis lyrata subsp.
lyrata]
Length = 103
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/43 (69%), Positives = 37/43 (86%)
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ K E+EYE ILKRT+QSIC+LT+ NTTTSVIIQVVHD G++
Sbjct: 49 LRKVEREYETILKRTIQSICVLTVVLNTTTSVIIQVVHDGGSV 91
>gi|406862492|gb|EKD15542.1| exosome complex subunit Rrp46 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 247
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 107/252 (42%), Gaps = 52/252 (20%)
Query: 21 CSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY 80
S LHR GSA++SQ V+ AV GP +++E PE+A+I+V+ +P G E+
Sbjct: 11 LSHLHRTDGSATFSQNGYTVIGAVNGPLEIQRRDELPEEAAIDVLVRPAAGVGSTRERHL 70
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVV---HDDGA------------LLPCAINAACA 125
E IL+ TL+ I ++ P + + +Q+ D A +LP + A
Sbjct: 71 ESILQSTLRHIVLIHNFPRSLIQITLQITSTPESDSAGSKLVQASSNLPILPALLQTATL 130
Query: 126 ALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSL 185
AL+ A +P+ ++ + G I +PT L+ Q N +L+ G L
Sbjct: 131 ALLSASMPLSMTLTSVYLALSPEG-IISNPTPLQSQSASS-------NHVLAFTSNGDLL 182
Query: 186 VQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA------------------ASAKLSDFL 227
V + + G+ ++ D+ E G+A LS FL
Sbjct: 183 V-----------AESEGSFTLKDWEGVYEAGKAICCDNSGAHGDYAMGDDEKDVSLSVFL 231
Query: 228 RRSLQSKLPGDL 239
+ +L+ K+ DL
Sbjct: 232 KSTLEEKIKTDL 243
>gi|167043479|gb|ABZ08176.1| putative 3' exoribonuclease family, domain 1 [uncultured marine
microorganism HF4000_APKG2H5]
Length = 238
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 12/167 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR P LRP++ ++ A GSA G V+AAVYGP +A +K ++A ++
Sbjct: 16 RMDGRKPADLRPISIEVGVVPVAAGSACVRWGTNHVIAAVYGPMEAHPRKISRQDRAVLD 75
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + R G + +E + L+S+ +L + P + V I+++ +
Sbjct: 76 VRYNMAPFSTTDRIRPG-FNRRSREISKVTSDALESVVLLEMYPRSKIRVEIEILCAEAG 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+ AA AL AGIPM + V++ +G I D K E+
Sbjct: 135 TRCVGLTAASVALAHAGIPMTDMVVSVASGKI-NGVVICDLNKEEDN 180
>gi|297795147|ref|XP_002865458.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
gi|297311293|gb|EFH41717.1| hypothetical protein ARALYDRAFT_494696 [Arabidopsis lyrata subsp.
lyrata]
Length = 122
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 38/43 (88%)
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ K E+EY+ ILKRTLQ+IC+LT+ PN+TTSVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQNICVLTVVPNSTTSVIIQVVHDGGSV 91
>gi|374325948|ref|YP_005084148.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
gi|356641217|gb|AET31896.1| exosome complex exonuclease Rrp41 [Pyrobaculum sp. 1860]
Length = 224
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 11/162 (6%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIEVIW------ 66
+R + S ++ A GSA S G T +AAVYGP+ ++ + P++ + V +
Sbjct: 1 MREVKISVGVVSNADGSAMVSYGTTTAVAAVYGPREMHPRHLSLPDRGVMRVRYHMAPFS 60
Query: 67 ---KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAA 123
+ ++ + E E +L+ L+ +L P + V ++++ DG+ ++ AA
Sbjct: 61 TKDERKSPTPSRREIEISKVLREALEPAIMLEQYPRSRIDVFVEILQADGSTRVASLTAA 120
Query: 124 CAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
AL DAGI M+ L + + + G +LD LE+Q +G
Sbjct: 121 SLALADAGIYMRDLVIGVSVGLVD-GTVVLDLNGLEDQYGEG 161
>gi|322696851|gb|EFY88637.1| hypothetical protein MAC_05255 [Metarhizium acridum CQMa 102]
Length = 271
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 99/235 (42%), Gaps = 52/235 (22%)
Query: 16 PLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK 75
PLA S L A GSA++S V AAV GP +++ENP +A I+V+ +P G GK
Sbjct: 7 PLA-QLSNLPNADGSATFSYCGYVVTAAVNGPIEAPRRDENPFEALIDVVVRPAAGVGGK 65
Query: 76 -----------------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVV--------- 109
E++ E IL+ L+ + + P V +Q++
Sbjct: 66 DRPFHLNLQSLIIWPGTAERQLESILQAALRQLIPIRNFPRCMIQVTLQIMEAPENAYQN 125
Query: 110 ------HDDGALLPCAINAACAALVDAGIPMKHLAVAICCC-SAESGYCILDPTKLEEQK 162
+ A++P +AA L+ A +P+K +A A A SG I+DP+ E +
Sbjct: 126 TKLLQAQSNLAIIPALFHAAILGLLTAAVPLKTIATATTLAIPAGSGALIIDPSPEESAQ 185
Query: 163 MKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 217
+ L F + +L E S G+ S++D+ LE G+
Sbjct: 186 ARSLHALAFTSHDELLLAESS------------------GSFSIEDWDRVLETGQ 222
>gi|293335373|ref|NP_001168912.1| uncharacterized protein LOC100382718 [Zea mays]
gi|223973667|gb|ACN31021.1| unknown [Zea mays]
Length = 209
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 86/214 (40%), Gaps = 29/214 (13%)
Query: 27 AHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------KASIEVIWKPRTGQIGKPEKEY 80
A GSA G TKV+ +V+GP+ K + S P GQ G KEY
Sbjct: 9 ASGSAYAEFGKTKVIVSVFGPRESKKAMMYSDVGRLNCNVSYTTFATPVRGQ-GADNKEY 67
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL--A 138
+L + L+ +L P TT V V+ G+ LP I+ A AL DAGI M L +
Sbjct: 68 SSMLHKALEGAVMLHTFPKTTVDVFALVLESGGSDLPIIISCASLALADAGIMMYDLVTS 127
Query: 139 VAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITS 198
V++ C I+DPT EE +GS +V P I
Sbjct: 128 VSVSCFRKN---IIIDPTSDEE-----------------AWQDGSLVVAFMPARKEITQL 167
Query: 199 VTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
G S + +E A +KL D LR L+
Sbjct: 168 TLTGEWSDGRITNAVELCMDACSKLGDILRDRLK 201
>gi|336464304|gb|EGO52544.1| hypothetical protein NEUTE1DRAFT_72274 [Neurospora tetrasperma FGSC
2508]
Length = 251
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 20/241 (8%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
S + L RA GSA +S V A+V GP +++E+ +A ++VI +P G G E+
Sbjct: 8 ASLNALPRADGSARYSYAGYTVTASVNGPIEAQRRDEHAYEAHVDVIVRPSAGVGGTRER 67
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E IL+ +L I ++ P + +++QV + ++P + A
Sbjct: 68 HLESILQSSLSQIILVKNFPRSVIQIVLQVESTPENAYVNTKLVQASLNLPIIPALLQTA 127
Query: 124 CAALVDAGIPMKHLAVAICCCSAE---SGYCILDPTKLEEQKMKGFAYLVFP--NSILSV 178
AL+ A +PMK A + S + DP+ + ++ L F + +L
Sbjct: 128 VLALLSAAVPMKATATSTVVAVVSDDGSKKIVADPSPKDIKEATSLHVLAFTSHDELLLS 187
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238
EG V+ + + S D + A+S + FLR +L++K+ D
Sbjct: 188 ESEGDFTVKEWDGVYENAQKICCQTASKQDGIDMVLDDDASSPDMRHFLRSTLETKVASD 247
Query: 239 L 239
L
Sbjct: 248 L 248
>gi|380027897|ref|XP_003697651.1| PREDICTED: exosome complex component MTR3-like [Apis florea]
Length = 273
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R D R +++R + I+ +A GSA G+TKV+ +V+ P+ + +N + I
Sbjct: 37 RNDKRANSEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCTQGEIYC 96
Query: 63 EVIWKPRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P + Q K EK+Y +IL+R L+ L PN V V+ + G+ L
Sbjct: 97 EFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAGSSL 156
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AI AA AL +AG+PM L A Y ++DPT EE
Sbjct: 157 AAAIMAASTALANAGVPMFGLVTA-STIGIYDNYYLMDPTDTEE 199
>gi|449019724|dbj|BAM83126.1| similar to ribonuclease PH [Cyanidioschyzon merolae strain 10D]
Length = 294
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 53/223 (23%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-------KAGTKK 53
M+ R DGR+ RPL + +L RA GS+ S G+T+VL +VYGP ++G
Sbjct: 1 MDSVRPDGRSSEAFRPLRVALGVLERADGSSLLSLGETRVLVSVYGPLQSELSTRSGGVA 60
Query: 54 NENPEKASIEVIW-KP---------------RTGQIGKP--------------------- 76
+ P + +V W +P R G G P
Sbjct: 61 VQTPRDGTCQVTWLEPEPTLSDILTTTREAHRGGVQGAPYPVLPLSAEQAAVRSRATGLR 120
Query: 77 -EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 135
E +L+R S+ IL ++ VI+QV+H DG L A+ AA AL+DAG+ ++
Sbjct: 121 RHPATETLLERLFSSVIILMEYASSCIHVIVQVLHHDGGTLAAAVIAASLALMDAGVSLR 180
Query: 136 HLAVAICCCSAESGY------CILDPT--KLEEQKMKGFAYLV 170
VA+ + + ++DPT +L +Q + ++V
Sbjct: 181 GFLVAVPILARSIDHEQADVSWLVDPTLAELRQQSLGSSLWVV 223
>gi|340924154|gb|EGS19057.1| hypothetical protein CTHT_0056790 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 258
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 15/128 (11%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
+L RA GSA +S V A+V GP +++E+P +A ++VI +P G G E+ E
Sbjct: 16 VLPRADGSARYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRERHLES 75
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAAL 127
IL+ + I ++ P + +++QV + A++P A AL
Sbjct: 76 ILQSSFAQIILVKSFPRSLIQIVLQVEESPENEYVNTKLVQASLNFAVMPALFQTAMLAL 135
Query: 128 VDAGIPMK 135
+ AG+PM+
Sbjct: 136 LSAGVPMR 143
>gi|367018248|ref|XP_003658409.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
gi|347005676|gb|AEO53164.1| hypothetical protein MYCTH_2294138 [Myceliophthora thermophila ATCC
42464]
Length = 253
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 21/242 (8%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
+ +L R+ GSA +S V A+V GP +++E+ +A ++V+ +P G G E+
Sbjct: 9 AALGVLPRSDGSAKYSHAGYTVTASVNGPIEAQRRDEHAYEAHVDVVVRPAAGVGGTRER 68
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E +L+ +L + ++ P + +++Q+ + A++P + AA
Sbjct: 69 HLESLLQSSLTQLILVKNFPRSLIQIVLQIEDSPENDHVNTKLVQASLNFAIMPALVQAA 128
Query: 124 CAALVDAGIPMK--HLAVAICCCSAESG-YCILDPTKLEEQKMKGFAYLVFP--NSILSV 178
AL+ AG+PM+ A A+ + G I+DP+ E + + L F + +L
Sbjct: 129 ILALLSAGVPMRATATATAVAIVRQDGGKRTIVDPSPREVETAESVHVLGFTSHDGLLLA 188
Query: 179 LPEGSSLVQGEPMEHGIITSV-THGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 237
EG V + I ++ A + + L+ + + + FLR +++SK+
Sbjct: 189 ESEGDFTVSEWDQVYEIARAICCRSAPAKEGMAMVLDDEQTSGPDMRQFLRSAMESKVAA 248
Query: 238 DL 239
DL
Sbjct: 249 DL 250
>gi|342319249|gb|EGU11199.1| Exosome non-catalytic core component involved in 3'-5' RNA
processing and degradation [Rhodotorula glutinis ATCC
204091]
Length = 301
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 104/268 (38%), Gaps = 54/268 (20%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP 68
R LRPLA S L RA GSA ++ G+ VL +V GP ++E ++A++E+ +P
Sbjct: 7 RQATALRPLALSQGTLSRADGSAQFTFGNVSVLGSVTGPAEVRLRDELVDRATLEINVRP 66
Query: 69 RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV------------------H 110
GQ G P K L + + +L + P +Q +
Sbjct: 67 LRGQGGPPIKAAASTLSQLFAPLILLHLYPRALIQHTLQTISSPSTTFTKPFSTDPSLRS 126
Query: 111 DD---------------GALLPCA-INAACAALVDAGIPMKHLAVAICCC-------SAE 147
DD GA A INAA ALVDAG+ + + VA+ A+
Sbjct: 127 DDKGKGKELEAPRGTGVGAGEKAARINAAMMALVDAGVQCRGMLVAVAVAFVPVQDGEAD 186
Query: 148 SGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH-GAMSV 206
LDPT EE++ F S QG G V G S
Sbjct: 187 DEEMRLDPTSAEEEEATSTHVFAF------------SFGQGVGGTEGTCVGVDSVGTFSE 234
Query: 207 DDYFHCLERGRAASAKLSDFLRRSLQSK 234
D F + + A + F+R+S+++K
Sbjct: 235 DQLFDAQDLAQTACQTILAFIRKSVETK 262
>gi|171694984|ref|XP_001912416.1| hypothetical protein [Podospora anserina S mat+]
gi|170947734|emb|CAP59897.1| unnamed protein product [Podospora anserina S mat+]
Length = 262
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 15/133 (11%)
Query: 18 ACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPE 77
A + +L RA GSA +S V A+V GP +++E+P +A ++VI +P G G E
Sbjct: 17 AAALGVLPRADGSAKYSHAGYTVTASVNGPIEAQRRDEHPYEAHVDVIVRPAAGVGGTRE 76
Query: 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINA 122
+ E IL+ +L I ++ P + +++QV + +++P
Sbjct: 77 RHLESILQSSLSQIILVKNFPRSLIQIVLQVEDSPENDYVNTKLVQASLNFSIMPALFQT 136
Query: 123 ACAALVDAGIPMK 135
A AL+ AG+P++
Sbjct: 137 AVLALLSAGVPIR 149
>gi|363748182|ref|XP_003644309.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887941|gb|AET37492.1| hypothetical protein Ecym_1249 [Eremothecium cymbalariae
DBVPG#7215]
Length = 220
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 9/173 (5%)
Query: 20 SCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE 79
S S+L GS+ + T ++ +V GP + E P+ +IE+I++P +G EK
Sbjct: 2 SISVLEHVDGSSQYWTPTTSLICSVSGPIEPKARQEIPQHLAIEIIFRPASGPSTTREKL 61
Query: 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL----LPCAINAACAALVDAGIPMK 135
E ++ + + ++P + Q + G L AINAA AL+DAGIP+K
Sbjct: 62 LEERIRAAVTPMVETFLHPRQLCQITFQALKSVGQYSHMELNSAINAAFLALIDAGIPLK 121
Query: 136 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP-----NSILSVLPEGS 183
+ ++ E G ++P Q K + + F N++L + +GS
Sbjct: 122 SVFTSVTVSVDEDGRKFVNPDVNRLQTAKSVSTVAFKISTGNNTLLLLHSDGS 174
>gi|297838825|ref|XP_002887294.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297333135|gb|EFH63553.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 122
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 37/43 (86%)
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ K E+EY+ ILKRTLQSIC+LT+ PN+T SVIIQVVHD G++
Sbjct: 49 LRKVEREYKTILKRTLQSICVLTVVPNSTISVIIQVVHDGGSV 91
>gi|401420330|ref|XP_003874654.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490890|emb|CBZ26154.1| putative exosome complex exonuclease rrp41 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 246
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P + R + + L GS + G +KV A+V+GP+ K E ++
Sbjct: 14 RLDGRRPREARRMDIAFGTLSACDGSCDITLGQSKVCASVFGPRESLHKQEAKHDKALVT 73
Query: 63 -EVIWKPRTGQIGK-PEKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ + P++ + + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGENRRNPQRRSRLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
INAAC AL+DA + M+ A+CC A
Sbjct: 134 EKIACINAACLALIDANVAMRD---AVCCIDA 162
>gi|288560609|ref|YP_003424095.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
gi|288543319|gb|ADC47203.1| exosome complex exonuclease Rrp41 [Methanobrevibacter ruminantium
M1]
Length = 236
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 30/177 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++LRP+ +L RA GSA G K+LA+VYGP+ ++ I
Sbjct: 12 RGDGRAYDELRPIKIEAGVLKRADGSAYLEVGGNKILASVYGPR----------ESYIRR 61
Query: 65 IWKPRTGQI-----------------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVI 105
+ KP TG I G + EI I L+ +L P + V
Sbjct: 62 LLKPNTGVIRVRYNMAPFSVDDRKRPGPDRRSTEISKIAADALRPALMLESFPRSMVDVS 121
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I+V+ +G I AA AL DAGIPMK + V C + +LD ++ E+++
Sbjct: 122 IEVIEAEGGTRCAGITAAAVALADAGIPMKDIVVG-CAAGKVNDEIVLDLSEKEDKE 177
>gi|170290983|ref|YP_001737799.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175063|gb|ACB08116.1| exosome complex exonuclease 1 [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 248
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P+++RP+ +L +A GSA G ++LAAV+GP+ K+ P++A I
Sbjct: 19 RTDGRLPHEMRPIKMMVGVLEKADGSAFVEWGGNRILAAVFGPREVHPKHMVLPDRALIR 78
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ P + G + E+ +++ L+ P + + ++V+ D
Sbjct: 79 ARYNMAPFSTPERRRPGPDRRSIELSKVIREALKPAIFAENYPGSVIDIFVEVLRSDAGT 138
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
INAA AL AG+ M+ L V+ C + ++DP E+
Sbjct: 139 RVAGINAASLALASAGVAMRGL-VSACSVGRVGSFIVVDPNHDED 182
>gi|406603483|emb|CCH45039.1| Polyribonucleotide nucleotidyltransferase [Wickerhamomyces
ciferrii]
Length = 245
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 15/178 (8%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP----------KAGTKK 53
R DGR N+LR C + + + GS+ QG++K++ V GP G
Sbjct: 13 RMDGRRWNELRRFDCRINTHPNSSDGSSYVEQGNSKIVCIVNGPMEPPTKAQLSTTGATL 72
Query: 54 NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
N N I + + + + +E LKRT + I+ P TT S+ + V+ DG
Sbjct: 73 NLNLNVTPFSSIDRKKRSKNERRIQEIITSLKRTFEQSIIIDKYPRTTISINVHVLSLDG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
L+ NA AL+DAGI M A+ ++ +LD LEE K +YL
Sbjct: 133 GLISSITNAITLALIDAGIAMYEYISAVSAGWYDNT-PLLDLNSLEE---KDVSYLTL 186
>gi|381190722|ref|ZP_09898239.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
gi|380451431|gb|EIA39038.1| polynucleotide phosphorylase/polyadenylase [Thermus sp. RL]
Length = 713
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>gi|398409290|ref|XP_003856110.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
gi|339475995|gb|EGP91086.1| hypothetical protein MYCGRDRAFT_65596 [Zymoseptoria tritici IPO323]
Length = 250
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + S A GS+ + G+TKV+ V+GP+ + +A+IEV
Sbjct: 14 RIDGRRWNELRRIQGQMSTQAAADGSSYFEMGNTKVMCTVHGPRQSARSGGGTREATIEV 73
Query: 65 ---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + K +E + + P++T ++++ V+ DGAL
Sbjct: 74 EIGVAGFSGTERKKRARADKRTQEMQHSISSAFSDTVFTAFYPSSTITIVLHVLSQDGAL 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
L +NAA ALVDAG+PM +A C + + Y D
Sbjct: 134 LAACLNAATLALVDAGVPMTDY-IAACTTGSTASYASND 171
>gi|384431325|ref|YP_005640685.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333966793|gb|AEG33558.1| Polyribonucleotide nucleotidyltransferase [Thermus thermophilus
SG0.5JP17-16]
Length = 713
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>gi|84490039|ref|YP_448271.1| exosome complex exonuclease Rrp41 [Methanosphaera stadtmanae DSM
3091]
gi|84373358|gb|ABC57628.1| putative exosome complex, exonuclease 1 subunit [Methanosphaera
stadtmanae DSM 3091]
Length = 232
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 12/170 (7%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKA 60
E R DGR N LR + +L+ A GSA G+ K+L VYGP+ +KK+ P+ A
Sbjct: 4 EFIRKDGRAYNTLRNMKMEVGVLNNADGSAYIECGNNKILVGVYGPREIHSKKHSKPDGA 63
Query: 61 SIE---------VIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ V + R G + E ++ + L P + + I+V+
Sbjct: 64 VLRCKYNMAPFSVKERKRPGP-NRRSTEISKLISEAITPNIFLEKYPRASIDISIEVLEA 122
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
+G I A AL DA IPMK L ++ C + +LD ++ E+Q
Sbjct: 123 EGGTRCLGIVGASLALADAEIPMKDL-ISACAVGKVDDHIVLDLSEQEDQ 171
>gi|46199080|ref|YP_004747.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
gi|75424073|sp|Q9ZAE1.1|PNP_THETH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81405907|sp|Q72JJ8.1|PNP_THET2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|4138650|emb|CAB06341.1| polynucleotide phosphorylase [Thermus thermophilus]
gi|46196704|gb|AAS81120.1| polynucleotide phosphorylase [Thermus thermophilus HB27]
Length = 713
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>gi|384245391|gb|EIE18885.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 195
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 96/216 (44%), Gaps = 26/216 (12%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L +A GSA G+TKV+A VYGP+ +K E S E R E+E +
Sbjct: 6 LSQAAGSAYAEFGNTKVIAGVYGPREAERK----EVFSTE----GRLQCDNDEERELSVQ 57
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 143
L+ L++ L P + V+ GA L I AA AL DAGI M+ + V+ C
Sbjct: 58 LQTALEAAVRLQTFPKANVDIYCLVLESAGADLAVCICAASLALADAGIEMEDM-VSACS 116
Query: 144 CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA 203
S G+ +LDPT E + G +++L+++P +++ Q V G
Sbjct: 117 VSRVDGHLLLDPTIDEAYREDG-------SALLAMMPSANAVSQ----------VVLTGQ 159
Query: 204 MSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
S L+ A++ ++R+S++ G +
Sbjct: 160 WSNAQASEVLQLCMGGCAQIDAYMRQSIKEAAAGQV 195
>gi|242786884|ref|XP_002480892.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
gi|218721039|gb|EED20458.1| exosome complex endonuclease 1/ribosomal RNA processing protein,
putative [Talaromyces stipitatus ATCC 10500]
Length = 284
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK-ASIE 63
R DGR N+LR L S + GS+ S G+T ++ V+GP + E I+
Sbjct: 15 RLDGRRWNELRLLQAQISTNSASSGSSYLSMGNTSIMCTVHGPHETSGAGSATEALVDID 74
Query: 64 V--------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V K R G + + LK QS + P++T +V + V+ DG+L
Sbjct: 75 VNIAGFAGVDRKRRAGGSDRQSSQLSTALKSAFQSHLHTYLYPHSTITVQVSVLSSDGSL 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSA 146
AINA ALVDAGIPM L +C C+A
Sbjct: 135 FAAAINACTLALVDAGIPMPGL---LCACTA 162
>gi|55981108|ref|YP_144405.1| polynucleotide phosphorylase/polyadenylase [Thermus thermophilus
HB8]
gi|81364132|sp|Q5SJ75.1|PNP_THET8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|55772521|dbj|BAD70962.1| polynucleotide phosphorylase [Thermus thermophilus HB8]
Length = 713
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>gi|386360362|ref|YP_006058607.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
gi|383509389|gb|AFH38821.1| polyribonucleotide nucleotidyltransferase [Thermus thermophilus
JL-18]
Length = 713
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>gi|240964212|ref|XP_002400824.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
gi|215490745|gb|EEC00386.1| exosomal 3'-5' exoribonuclease complex, subunit Rrp41, putative
[Ixodes scapularis]
Length = 157
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 17/163 (10%)
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
E +++ TL+++ ++ ++P T S+ +Q +H+DG+LL C INAAC A +DA I MK A
Sbjct: 10 EKVVRSTLETVMLVALHPRTCISISLQELHNDGSLLACCINAACLAAIDAAIAMKCQVAA 69
Query: 141 ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVT 200
+ +G +LDP K +E++ + F E + ++++ T
Sbjct: 70 VSAAITHTGIVVLDPNKKQEEEARATCTFSF-----------------ESRDSKVVSTRT 112
Query: 201 HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 243
G S ++ CL RAA+A + F R + + + L E
Sbjct: 113 TGRFSAQEFQKCLSACRAAAADIFAFYRDAFRRRYSKCLEVGE 155
>gi|392566799|gb|EIW59974.1| mRNA transport regulator 3 [Trametes versicolor FP-101664 SS1]
Length = 261
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 106/237 (44%), Gaps = 29/237 (12%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-KASIEVIW 66
GR +RP+ ++++A+GSA TK+ AVYGP+ N + + ++EV +
Sbjct: 40 GRAARDIRPIYLKAGLINQANGSAYIETERTKIACAVYGPRQSKTTVYNEKGRLNVEVKF 99
Query: 67 KP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG--ALLPC 118
P R ++ + +++ L S L + P +T + + V+ +DG +
Sbjct: 100 APFSCTKRRVPIRDAEDRSVAVQIQQALASAVRLELLPKSTLDIFVTVIENDGIEGCIAA 159
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSV 178
AA AL DAGI M L VA C + +DPT+ E S
Sbjct: 160 GSVAASVALADAGIEMLGL-VASCSAAVVGKEIWMDPTEEE-----------------SK 201
Query: 179 LPEGSSLVQGEPMEHGIITSVTH-GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
L GS ++ G P G ITSV G+M+ D+ C+E + + A + + +SL K
Sbjct: 202 LASGSVVLAGLPA-LGTITSVWQSGSMAPDEAIKCMEACQESCADIHTVMAQSLLEK 257
>gi|302502983|ref|XP_003013452.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
gi|291177016|gb|EFE32812.1| hypothetical protein ARB_00270 [Arthroderma benhamiae CBS 112371]
Length = 302
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--I 62
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A I
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVI 73
Query: 63 EVIW------------KPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V+ K G G + E +L+ Q + P +T SV +
Sbjct: 74 NVVVNLAGFANVDRKKKSAAGSGGGDRQATTELATLLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L +NA ALVDAGIPM L +C C+
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGL---LCACT 168
>gi|414883682|tpg|DAA59696.1| TPA: chloroplast RNA processing4 [Zea mays]
Length = 880
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY--GPKAGTK-----KNENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G + + E+
Sbjct: 429 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 488
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P G+IG P + + ++ +R L+ I L + T V +
Sbjct: 489 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPLEEDFPYTIRVESTITE 548
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 549 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 580
>gi|297801466|ref|XP_002868617.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297838301|ref|XP_002887032.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
gi|297314453|gb|EFH44876.1| hypothetical protein ARALYDRAFT_493864 [Arabidopsis lyrata subsp.
lyrata]
gi|297332873|gb|EFH63291.1| hypothetical protein ARALYDRAFT_475740 [Arabidopsis lyrata subsp.
lyrata]
Length = 100
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
K E+EY+ ILKRTLQSIC+L + PN+TTSVIIQVVHD G++
Sbjct: 29 KVEREYKTILKRTLQSICVLKVVPNSTTSVIIQVVHDGGSV 69
>gi|395546050|ref|XP_003774907.1| PREDICTED: exosome complex component MTR3-like [Sarcophilus
harrisii]
Length = 305
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 75/172 (43%), Gaps = 17/172 (9%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---AGTKKNENPEKASIEVI 65
R+P + RP+ +A GS+ GDTK++A+VYGP+ G + +
Sbjct: 38 RDPRRQRPVYIRAGQTSQATGSSYLESGDTKIVASVYGPRQVEGGEPLTGLQGRLICDFR 97
Query: 66 WKPRTGQ--------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
P +G+ + EKE + L+ L L P V + V+ D GA+L
Sbjct: 98 RAPFSGRGKRRVPSSNNREEKEMSLALQEALMPAVQLLRYPRAQLEVYVLVLEDGGAILA 157
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESG----YCILDPTKLEEQKMKG 165
I AA AL DAGI M L A C SG +LDP EEQ+ G
Sbjct: 158 SGIIAASLALADAGIEMFDLVSA--CSLVLSGDAEPVWLLDPVLYEEQQACG 207
>gi|296412418|ref|XP_002835921.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629718|emb|CAZ80078.1| unnamed protein product [Tuber melanosporum]
Length = 278
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 25/173 (14%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASW-SQGDTKVLAAVYGP---KAGTKKNENPEKASIEV 64
RNP RP H S+ G+TKV+ +V GP +A + +N +++V
Sbjct: 56 RNPLTRRP----------PHRRPSYVEHGNTKVICSVNGPIEPRAASARNSERATVTVDV 105
Query: 65 IWKPRTG----QIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
+ +G + GK +K E + L RT + + T++P + + + ++ DG++L
Sbjct: 106 CFAAFSGTDRKKRGKSDKRVLEMQSALSRTFATTLLTTLHPRSEVHISLHILSQDGSILA 165
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSA----ESGYCILDPTKLEEQKMKGF 166
+NAA ALVDAG+PM A S ESG +LD + EE + G
Sbjct: 166 TCVNAATLALVDAGVPMSDYVTACTVASYTNPDESGEPLLDMSSAEEMDLPGI 218
>gi|255578123|ref|XP_002529931.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
gi|223530561|gb|EEF32439.1| Exosome complex exonuclease RRP41, putative [Ricinus communis]
Length = 180
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE------ 58
R DGR+ ++ RP ++ A GSA G+TKV+ +V+GP+ K +
Sbjct: 34 RPDGRSFSECRPAYFRTGAVNAAAGSAYAEFGNTKVIVSVFGPRESKKAMMYSDVGRLNC 93
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
S P GQ G KE+ +L ++L+ +L P TT V V+ G+ L
Sbjct: 94 NVSYTTFSTPVRGQ-GSDCKEFSSMLHKSLEGAIMLETFPKTTVDVFALVLESGGSDLSV 152
Query: 119 AINAACAALVDAGIPMKHLAVAI 141
++ A AL DAGI M L +
Sbjct: 153 IVSCASLALADAGIMMYDLVAGV 175
>gi|268570481|ref|XP_002640755.1| C. briggsae CBR-ARX-4 protein [Caenorhabditis briggsae]
Length = 539
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M+ + + R+ RPL+ C + GS G+T+VLA + GP K E+ K
Sbjct: 23 MDTEEVEQRSSTAFRPLSVKCGVFGAQDGSGYAEFGNTRVLAQILGPDGDGKWEEDHAKV 82
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+ + + E+ L + ++ + P + I V+ DDG +L AI
Sbjct: 83 VVTLKGVENETSVA----EWRAELTSSASAVIFVNKYPGKVIEIEITVLSDDGGVLSTAI 138
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF-PN 173
A AL +GI L ++ +G I DP+ E + G F PN
Sbjct: 139 TAMALALAHSGIEHMGLTASVHVAMRPNGDYITDPSTSESSGILGGVTFAFVPN 192
>gi|448113411|ref|XP_004202344.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359465333|emb|CCE89038.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
L S+L++ GSA G TK++A+V GP + E P AS+E+I +P G
Sbjct: 3 LVVKSSLLNKVDGSAEVEIGRTKLVASVSGPIEPRSRQELPNSASLEIIVRPAVGVSTTR 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQ--VVHDDGAL--------------LPCAI 120
EK E L+ LQ++ I P ++IQ V D L AI
Sbjct: 63 EKLIEDKLRSLLQNVIIRHKYPRQLIQIVIQFLVTEDTNNYSITESQKQKLTSIELNAAI 122
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAES 148
NA ALVDA I + + ++C C+ S
Sbjct: 123 NACYFALVDANIALYYSFSSVCICANSS 150
>gi|41615042|ref|NP_963540.1| exosome complex exonuclease Rrp41 [Nanoarchaeum equitans Kin4-M]
gi|40068766|gb|AAR39101.1| NEQ248 [Nanoarchaeum equitans Kin4-M]
Length = 233
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ N++R ++ +A GSA G+T +AAVY + N +
Sbjct: 2 RFDGRDYNEIRDTEMKIGVISKADGSAYCRTGNTIAIAAVYLKPGREQSNLKVSYRMLPF 61
Query: 65 IWKPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINA 122
+ R G +G +E E+ I+ + L+ I P T ++++ D AINA
Sbjct: 62 AGEERKG-LGLTRREIELSYIIAKALEPAIIFEEIPYLTIEASVEIIKADAGTRVAAINA 120
Query: 123 ACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AL AGIPMK L AI +LD K EE
Sbjct: 121 LSLALAHAGIPMKALVGAIAVGKVGEK-IVLDLNKQEE 157
>gi|307178493|gb|EFN67182.1| Exosome complex exonuclease MTR3 [Camponotus floridanus]
Length = 282
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR+ N+LR + I+ +A GSA G+TK++ +V+ P+ K + +
Sbjct: 37 RHDGRSNNELRNIFLKTGIISQAKGSAYIEMGNTKIICSVFDPREVPNKTGYCVQGELFC 96
Query: 63 EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P + Q EKEY +IL+R L+ L PN V V+ + G+ L
Sbjct: 97 EFKFAPFSHHKRKMHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLDNGGSAL 156
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AI AA AL +AG+PM L A + Y ++DPT EE
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGIYDHTY-LVDPTDTEE 199
>gi|390595539|gb|EIN04944.1| hypothetical protein PUNSTDRAFT_116225 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 261
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPEKAS 61
R+DGR +LR + + A G A+ S G T+V +V+GP+ +++ + +
Sbjct: 14 RSDGRRQYELRDINIDMTHQGPADGFATVSHGLTEVSVSVFGPREARLRSQTIHDRANIN 73
Query: 62 IEVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+EV P + + E+ +K T + + ++ P + + + V+ DG
Sbjct: 74 VEVNIAPFSTGDRRRRNRGDKRILEFGATIKSTFEPVIQTSLYPRSQIDIHVLVLQQDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
+L INA AL+DAGIP+ + A+ S +LD T LEE + + P +
Sbjct: 134 VLQACINATTLALIDAGIPLLDILCAV-TGGVHSTSPLLDLTNLEENDVPHITVAIMPRT 192
>gi|406959954|gb|EKD87172.1| hypothetical protein ACD_37C00024G0016 [uncultured bacterium]
Length = 759
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----K 59
R DGR PN +RP++ SIL R HGSA + +GDT+ L V G + E+ E K
Sbjct: 323 RPDGRKPNDIRPISAQVSILPRTHGSAIFQRGDTQALTVVTLGSPRMEQLIESAEGEEAK 382
Query: 60 ASIEVIWKP-----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVIIQVV 109
I P TG++G P + I L + + PN T V+ +++
Sbjct: 383 RYIHHYSMPPYSVGETGRVGTPSRRE--IGHGALAEKALANVIPNKDTFPYTIRVVSEIL 440
Query: 110 HDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ + + AL+DAG+P+K VA+ S E Y +L
Sbjct: 441 SSNGSTSMASACGSTLALMDAGVPIKTPVAGVAMGMVSDEDKYVVL 486
>gi|326477645|gb|EGE01655.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton equinum CBS 127.97]
Length = 302
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 72/158 (45%), Gaps = 21/158 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--I 62
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A I
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVI 73
Query: 63 EVIW------------KPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V+ K TG G + E L+ Q + P +T SV +
Sbjct: 74 NVVVNLAGFANVDRKKKSTTGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTISVHVS 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L +NA ALVDAGIPM L +C C+
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPMPGL---LCACT 168
>gi|224125980|ref|XP_002319726.1| predicted protein [Populus trichocarpa]
gi|222858102|gb|EEE95649.1| predicted protein [Populus trichocarpa]
Length = 853
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENP------ 57
R+DGR P +RP+ SC +L RAHGSA +++G+T+ LA V G K ++ +N
Sbjct: 376 RSDGRTPEGIRPIDSSCGLLPRAHGSALFTRGETQSLAVVTLGDKQMAQRVDNLVDEEEF 435
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P G+IG P + + ++ +R L+ I + T V +
Sbjct: 436 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPSENDFPYTVRVESTITE 495
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K + I
Sbjct: 496 SNGSSSMASVCGGCLALQDAGVPVKCMIAGIA 527
>gi|354543692|emb|CCE40413.1| hypothetical protein CPAR2_104490 [Candida parapsilosis]
Length = 219
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ + S+L A GSA + TK L +V GP + E P +AS+E+I +P +G
Sbjct: 1 MEVNTSVLSNADGSAELTMNGTKCLVSVSGPIEPKVRQELPTQASLEIIVRPSSGLSTTR 60
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQ-VVHDDGALLPC-----AINAACAALVDA 130
EK E L+ LQS+ I P ++IQ +V D+ C AIN AL+DA
Sbjct: 61 EKLLEDKLRSLLQSLIIRYKYPRQLIQIVIQFLVVDEQPEYTCNELNAAINGCYFALIDA 120
Query: 131 GIPMKHLAVAICCCSAESGYCILDPT 156
+ + + C SG I DPT
Sbjct: 121 DMALYSSFASTSVC-INSGNLIYDPT 145
>gi|327296349|ref|XP_003232869.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
gi|326465180|gb|EGD90633.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Trichophyton rubrum CBS 118892]
Length = 302
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 73/158 (46%), Gaps = 21/158 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--I 62
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A I
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVI 73
Query: 63 EVIW------------KPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V+ K TG G + E L+ Q + P +T +V +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANSLRDAFQPHIHAHLYPRSTITVHVS 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+LL +NA ALVDAGIPM L +C C+
Sbjct: 134 VLSSDGSLLAACLNACTLALVDAGIPMPGL---LCACT 168
>gi|342320046|gb|EGU11989.1| mRNA transport regulator 3 [Rhodotorula glutinis ATCC 204091]
Length = 270
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 88/182 (48%), Gaps = 20/182 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPE-KASI 62
R DGR Q+RP+ ++ A GSA G TKVL AVYGPK NP+ + ++
Sbjct: 35 RRDGRLAAQVRPIFLQPGLVTEAAGSAYIEAGRTKVLCAVYGPKPTPPSAPFNPKARLNV 94
Query: 63 EVIWKPRTGQIGK--PEKEYE-----IILKRTLQSICILTINPNTTTSVIIQVVHDDG-- 113
E+ + P + + P K+ E +L+++L +L P + + + V+ DG
Sbjct: 95 EIKFAPFASGVRRYVPGKDTEATGLAAVLQQSLLPSLLLETLPKSQIDLFVTVLESDGWD 154
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA------ESGYCILDPTKLEEQKMKGFA 167
L + AA AL +AGIPM+ L + CSA S ILDPT+ E ++ F
Sbjct: 155 NDLSIGVTAASVALAEAGIPMRGL---VTACSATLLPTPNSKSAILDPTRDEARESSAFV 211
Query: 168 YL 169
L
Sbjct: 212 SL 213
>gi|408391376|gb|EKJ70754.1| hypothetical protein FPSE_09047 [Fusarium pseudograminearum CS3096]
Length = 250
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 54/257 (21%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
S L ++ GSA++S G V+AAV GP +++EN +A ++VI +P G G E+
Sbjct: 9 AEISHLAKSDGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRER 68
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
+ E I++ L+ I + P + +QV + ++P +++A
Sbjct: 69 QLESIMQAALRQIIPVRDYPRCVIQITLQVAETPENAYVNAKVVQAQLNLPIIPALLHSA 128
Query: 124 CAALVDAGIPMKHLAVA--ICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
L+ A IP+K + A I E I+DP+ ++ K L F +
Sbjct: 129 ILGLLSAAIPLKTIGAATLIAVPEGEGEDIIVDPSAVDIDHAKSVHALAFTS-------- 180
Query: 182 GSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA-------------------SAK 222
++ S + GA + D++ L+ G+ S
Sbjct: 181 ----------HDELLLSESEGAFTPDEWTKVLQLGQRVCCEHQQPGLDTAMSGDDIESPS 230
Query: 223 LSDFLRRSLQSKLPGDL 239
+ F+R ++ +K+ DL
Sbjct: 231 MRQFIRSAMGAKVAEDL 247
>gi|410079801|ref|XP_003957481.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
gi|372464067|emb|CCF58346.1| hypothetical protein KAFR_0E01920 [Kazachstania africana CBS 2517]
Length = 246
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H + GS+ QG+ K+ V GP+ +++++ + KA++
Sbjct: 13 RLDGRRWNELRKFDASINTHAHLSDGSSYLEQGNNKIFTLVKGPREPSQRSQLDQSKATL 72
Query: 63 EVIWK-------PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V R+ K E+ E + L RT + +L P T + I V+ D
Sbjct: 73 NVTVNITRFSKFERSKASHKNERRTLEIQTSLVRTFEKNLMLQNYPRTVIDIEIHVLQQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G L+ IN A +DAGI M + ++ +LD LEE M
Sbjct: 133 GGLVGSLINGITLACIDAGIAMYDYISGVSVGLYDT-VPLLDINSLEENAM 182
>gi|146104020|ref|XP_001469709.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
gi|134074079|emb|CAM72821.1| putative exosome complex exonuclease rrp41 [Leishmania infantum
JPCM5]
Length = 246
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 73/152 (48%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P + R + + S L GS + G +KV A V+GP+ K E +
Sbjct: 14 RLDGRRPLEARRMDIAFSTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVT 73
Query: 63 -EVIWKPRTGQIGK-PEKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ + P++ ++ + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAAC AL+DA + M+ A+CC A
Sbjct: 134 EKIACVNAACLALIDANVAMRD---AVCCIDA 162
>gi|328793187|ref|XP_623498.2| PREDICTED: exosome complex exonuclease MTR3-like isoform 1 [Apis
mellifera]
Length = 270
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R D R+ N++R + I+ +A GSA G+TKV+ +V+ P+ + +N + I
Sbjct: 37 RNDKRSNNEMRKIFLKTGIVSQAKGSAYIELGNTKVVCSVFDPRELSNRNGYCSQGEIYC 96
Query: 63 EVIWKPRTGQIGK------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P + Q K EK+Y +IL+R L+ PN V V+ + G+ L
Sbjct: 97 EFKFAPFSCQKRKIHQQDAEEKQYSLILQRALEPAHEF---PNFQVDVYAMVLDNAGSSL 153
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AI AA AL +AG+PM L A ++ Y ++DPT EE
Sbjct: 154 AAAIMAASTALANAGVPMFGLVTASTIGIYDNHY-LMDPTDTEE 196
>gi|440469501|gb|ELQ38610.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae Y34]
gi|440482243|gb|ELQ62753.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae P131]
Length = 280
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 38/249 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR N+LR A GS+ G TKV+ V GP
Sbjct: 14 RVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITAT 73
Query: 49 -----AGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQSICILTINP 98
G + E SI V + + + G+ K +E + + L + +
Sbjct: 74 ATGGGQGAQSREAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQ 133
Query: 99 NTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------- 151
++T + + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 134 HSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVA-CSAGSTSSYAAADESAD 192
Query: 152 -ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 210
+LD + EE ++ G + V+ S VQ +E G++ G V +
Sbjct: 193 PLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLE-GMLAVAVDGCKQVREIL 251
Query: 211 HCL--ERGR 217
+ ERGR
Sbjct: 252 DRVVKERGR 260
>gi|6006870|gb|AAF00646.1|AC009540_23 putative polynucleotide phosphorylase [Arabidopsis thaliana]
gi|6091752|gb|AAF03462.1|AC009327_1 putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 948
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPEKAS-- 61
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E +
Sbjct: 473 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 532
Query: 62 ----IEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 533 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 592
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 593 SNGSSSMASVCGGCLALQDAGVPVK 617
>gi|30678905|ref|NP_187021.2| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
gi|75151653|sp|Q8GZQ3.1|PNP1_ARATH RecName: Full=Polyribonucleotide nucleotidyltransferase 1,
chloroplastic; Short=AtcpPNPase; AltName:
Full=Polynucleotide phosphorylase 1; Short=PNPase 1;
AltName: Full=Protein PIGMENT DEFECTIVE 326; AltName:
Full=Protein RESISTANT TO INHIBITION WITH FSM 10; Flags:
Precursor
gi|25991185|gb|AAN76771.1|AF450480_1 polynucleotide phosphorylase [Arabidopsis thaliana]
gi|332640453|gb|AEE73974.1| polyribonucleotide nucleotidyltransferase [Arabidopsis thaliana]
Length = 922
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 59 -KASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591
>gi|297828842|ref|XP_002882303.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
gi|297328143|gb|EFH58562.1| hypothetical protein ARALYDRAFT_896385 [Arabidopsis lyrata subsp.
lyrata]
Length = 922
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 59 -KASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591
>gi|297793375|ref|XP_002864572.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
gi|297310407|gb|EFH40831.1| hypothetical protein ARALYDRAFT_495957 [Arabidopsis lyrata subsp.
lyrata]
Length = 108
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
K E+EYE ILKRTLQ+IC+LT+ NT TSVIIQVVHD G
Sbjct: 37 KVEREYETILKRTLQNICVLTVVTNTATSVIIQVVHDGG 75
>gi|389623701|ref|XP_003709504.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
gi|351649033|gb|EHA56892.1| exosome complex exonuclease RRP41 [Magnaporthe oryzae 70-15]
Length = 280
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 97/249 (38%), Gaps = 38/249 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR N+LR A GS+ G TKV+ V GP
Sbjct: 14 RVDGRRWNELRRCHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITAT 73
Query: 49 -----AGTKKNENPEKASIEV-----IWKPRTGQIGKPEKEYEIILKRTLQSICILTINP 98
G + E SI V + + + G+ K +E + + L + +
Sbjct: 74 ATGGGQGAQSKEAEVVVSIVVAGFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQ 133
Query: 99 NTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC------- 151
++T + + V+ DG+LL INAA A VDAGIPM VA C + S Y
Sbjct: 134 HSTITFSLHVLSQDGSLLAALINAATLAAVDAGIPMADYVVA-CSAGSTSSYAAADESAD 192
Query: 152 -ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYF 210
+LD + EE ++ G + V+ S VQ +E G++ G V +
Sbjct: 193 PLLDLNQQEETELPGLTAATLGATDRVVVLSCESRVQASRLE-GMLAVAVDGCKQVREIL 251
Query: 211 HCL--ERGR 217
+ ERGR
Sbjct: 252 DRVVKERGR 260
>gi|358332153|dbj|GAA50858.1| exosome complex component RRP41 [Clonorchis sinensis]
Length = 477
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR N+LR + C + G QG+TKV+A+V GP+ K + P++A++
Sbjct: 231 RIDGRRTNELRRVFCQFQT-GNSDGIVLLHQGNTKVMASVVGPRPCRFKGDMKPDEATLV 289
Query: 64 VIWK--PRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ P + G+ K ++ ++ + P + + ++V+ D
Sbjct: 290 CKYNKPPFSSTSGERRKVSNRDRSTSDFAATIEEIFSCVVRKEKYPMSQIDIFLEVLQSD 349
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVA 140
G+ CA+NAA AL DAGI M+ LA A
Sbjct: 350 GSEFACAVNAATLALTDAGIEMRSLACA 377
>gi|7413616|emb|CAB85703.1| putative polynucleotide phosphorylase [Arabidopsis thaliana]
Length = 922
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 59 -KASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591
>gi|332030317|gb|EGI70060.1| Exosome complex exonuclease MTR3 [Acromyrmex echinatior]
Length = 282
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 81/172 (47%), Gaps = 25/172 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R D R+ N+LR + I+ +A GSA G+TKV+ +V+ P+ E P K
Sbjct: 37 RHDDRSDNELRNIFLKTGIVSQAKGSAYIEMGNTKVICSVFDPR------EIPNKTGFCM 90
Query: 63 ------EVIW------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
E + K + Q EKEY +IL+R L+ L PN V V+
Sbjct: 91 QGELFCEFKFASFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVLD 150
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVA--ICCCSAESGYCILDPTKLEE 160
+ G+ L AI AA AL +AG+PM L A I C G ++DPT +EE
Sbjct: 151 NGGSALAAAIMAASLALANAGVPMFGLVTASTIGIC---KGTYLVDPTDIEE 199
>gi|254468592|ref|ZP_05081998.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
gi|207087402|gb|EDZ64685.1| polyribonucleotide nucleotidyltransferase [beta proteobacterium
KB13]
Length = 710
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 115/245 (46%), Gaps = 32/245 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S S+L R HGSA +++G+T+ LA A G + + E +
Sbjct: 320 RIDGRDTRTVRPIEISTSVLPRTHGSALFTRGETQALAVATLGTPRDAQIIDALQGEYTD 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG++G P K EI + KR L ++ + + T ++ +++
Sbjct: 380 RFMLHYNFPPFSTGETGRVGSP-KRREIGHGRLAKRALLAVLPEQEDFDYTIRLVSEIME 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C A++DAG+P+K H+A +A+ ++ IL +E + +
Sbjct: 439 SNGSSSMASVCGGCMAMLDAGVPLKSHVAGIAMGLIKEDNRVAILTDILGDEDHLGDMDF 498
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
V + G + +Q + GI T + A L++ + + D ++
Sbjct: 499 KVAGSE------NGITALQMDIKIDGITTEIMQVA---------LKQAKEGREHILDLMK 543
Query: 229 RSLQS 233
++L+S
Sbjct: 544 KALKS 548
>gi|367015678|ref|XP_003682338.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
gi|359750000|emb|CCE93127.1| hypothetical protein TDEL_0F03160 [Torulaspora delbrueckii]
Length = 232
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 20 SCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE 79
S +L GS+ + DTKVL AV GP + E P + ++EV+ +P G EK
Sbjct: 7 STGVLTNVDGSSQFECRDTKVLCAVTGPVEPKARQELPTRLALEVVVRPAKGVPNTREKL 66
Query: 80 YEIILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGI 132
E L+ L + + + P + Q++ D+G L C INAA AL+DA +
Sbjct: 67 MEDRLRAVLTPLIVCSKYPRQLCQITCQILEAGEDEGEFSQKELSCCINAAFLALIDAQL 126
Query: 133 PMKHLAVAICCCS-AESGYCILDPT 156
+ + ++ ESG +L+PT
Sbjct: 127 ALHSFSSSVSLAVLKESGELVLNPT 151
>gi|384251192|gb|EIE24670.1| ribosomal protein S5 domain 2-like protein [Coccomyxa
subellipsoidea C-169]
Length = 245
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 15/201 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR P +LR L C L +A GSA + G+TKV+A YGPK +++
Sbjct: 10 RLDGRRPKELRALRCQLGPLPQADGSALFEMGNTKVIATAYGPKVADNRSQALHNRAIVK 69
Query: 57 ---PEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
E A + R G+ + E ++ L+ +L + P V +QV+ DG
Sbjct: 70 CDYAEAAFSTGNRRQRRGRGDRKTTELASTIRSALEHTILLDLFPRAQIGVSVQVLQADG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPN 173
+L INAA AL +AGIP++ + A ES +LD LE L
Sbjct: 130 GVLGACINAAMLALANAGIPLRDMIAATSAGYLES-TPLLDLNFLESTGAGPEVTLALHT 188
Query: 174 SI--LSVLPEGSSLVQGEPME 192
++ + +L E S+ + EP E
Sbjct: 189 NLDKVVILTEDST-IAAEPFE 208
>gi|401842317|gb|EJT44550.1| RRP46-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 223
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 20/218 (9%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
+L GS+ + DTK++ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 MLDNVDGSSQFVSQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTREKLLED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMK 135
L+ L + P + Q++ D+ L C INAA LVDAGI M
Sbjct: 69 KLRAVLTPLIARYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMN 128
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I +S I +PT +++K + +SV V G +
Sbjct: 129 SMCASIPIAIMKDSNEIIANPTA---EQLK---------TSVSVHSLALEFVDGGNVIKN 176
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
++ ++G + D F+ LE G +L LR+ +Q
Sbjct: 177 VLLLDSNGDFNEDQLFNVLELGEQKCQELVQDLRKIIQ 214
>gi|237841089|ref|XP_002369842.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|211967506|gb|EEB02702.1| 3' exoribonuclease, putative [Toxoplasma gondii ME49]
gi|221483644|gb|EEE21956.1| 3' exoribonuclease, putative [Toxoplasma gondii GT1]
Length = 303
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK-NENPEKASI 62
+R DGR ++R + L A GSA S G TK+ AVYGP+ K +++ ++
Sbjct: 46 ERHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGSINL 105
Query: 63 EVIWKP--RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
E + P TG+ E++ +L + L ++ L + +T +V + V+ DDG L+
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLIS 165
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGY-------CILDPTKLEEQK 162
A+ AL DAGI M + C G+ C+L EE++
Sbjct: 166 AALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERR 217
>gi|448116061|ref|XP_004202964.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
gi|359383832|emb|CCE79748.1| Piso0_001836 [Millerozyma farinosa CBS 7064]
Length = 234
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 16/148 (10%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
L S+L++ GSA G TK++A+V GP + E P AS+E+I +P G
Sbjct: 3 LIVKSSMLNKVDGSAEVEIGKTKLVASVSGPIEPRSRQELPNSASLEIIIRPAIGVSTTR 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQ--VVHDDGAL--------------LPCAI 120
EK E L+ LQS+ I P +++Q V D L AI
Sbjct: 63 EKLIEDKLRSLLQSVIIRHKYPRQLIQIVVQFLVTEDTNNYYITESQKQKLTSIELNAAI 122
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAES 148
NA AL+D+ I + + ++C C+ S
Sbjct: 123 NACYFALIDSNIALYYSFSSVCICANSS 150
>gi|71747850|ref|XP_822980.1| exosome complex exonuclease RRP41A [Trypanosoma brucei TREU927]
gi|70832648|gb|EAN78152.1| exosome complex exonuclease RRP41A [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 252
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPEKAS 61
R DGR PN+ R LA + G + G + V A VYGP+ + + E N +
Sbjct: 14 RLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLEGKYNEVTIT 73
Query: 62 IEVIWKPRTGQIGKPEKEY----EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGA 114
+V+ G+ + ++ Y E I L +S+ +L+ PN+ + I+V+ DG+
Sbjct: 74 CDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHL 137
INAAC AL+DA I MK +
Sbjct: 134 DKAACINAACLALIDASIAMKDV 156
>gi|363756298|ref|XP_003648365.1| hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891565|gb|AET41548.1| Hypothetical protein Ecym_8266 [Eremothecium cymbalariae
DBVPG#7215]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 13/182 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + + A GS+ QG+ K++ V GP+ +++ N K ++
Sbjct: 13 RIDGRRWNELRRFDYSINTHPNAADGSSYLEQGNNKIITLVKGPQEPNLRSQVNSNKGTL 72
Query: 63 EV---------IWKPRTGQIGKPEK-EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I + + G + E + L RT + +L + T + I V+ D
Sbjct: 73 TVTVNITKFSDIERSQAGHRNERRTLELQTALVRTFEKNIMLQLYSRTVIDIQIHVIQKD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172
G LL IN AL+DAGI M + ++ +LD LEE + V
Sbjct: 133 GGLLGAMINGITLALIDAGIAMYDYISGVSVGLYDT-TPLLDLNALEENALSSVTLAVVG 191
Query: 173 NS 174
S
Sbjct: 192 KS 193
>gi|303390958|ref|XP_003073709.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302857|gb|ADM12349.1| exosome RNAse PH-like protein [Encephalitozoon intestinalis ATCC
50506]
Length = 188
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGK-PEKEY 80
S++ GS+ ++ +T V V+GP + E+PE A ++V W+ G+ +K +
Sbjct: 9 SVIPHCTGSSRFTYNNTTVFCIVHGPSDSISRQEDPEMAILDVKWRDIILINGRIYDKYF 68
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
+++ L IL ++P + + VV + L CA+NAA AL DAGIP+ + A
Sbjct: 69 SREIEKILSKRIILELDPCRSIQISFNVVGEVRNTLFCAVNAALLALSDAGIPLISMFYA 128
Query: 141 ICCCSAESGYCILD 154
+ E + D
Sbjct: 129 SSSFTHEEEVIVFD 142
>gi|221504332|gb|EEE30007.1| 3' exoribonuclease, putative [Toxoplasma gondii VEG]
Length = 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 13/172 (7%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK-NENPEKASI 62
+R DGR ++R + L A GSA S G TK+ AVYGP+ K +++ ++
Sbjct: 46 ERHDGRRFEEMRAMCMQTHSLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGSINL 105
Query: 63 EVIWKP--RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLP 117
E + P TG+ E++ +L + L ++ L + +T +V + V+ DDG L+
Sbjct: 106 EFRFAPFATTGKDACSERDTAHLTTLLHQALNAVVRLDLYAKSTIAVSVLVLEDDGGLIS 165
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESGY-------CILDPTKLEEQK 162
A+ AL DAGI M + C G+ C+L EE++
Sbjct: 166 AALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLLDPDAEERR 217
>gi|68065138|ref|XP_674553.1| exosome complex exonuclease [Plasmodium berghei strain ANKA]
gi|56493201|emb|CAH99095.1| exosome complex exonuclease rrp41, putative [Plasmodium berghei]
Length = 246
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 5 RADGRNPNQLRPLACSC---SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
R DGR N+ R + + +I + A G A + G+TK+L+ + GP T+ + EK S
Sbjct: 13 RLDGRKCNEYRLIKINMGNQNIFNDADGFAFYEIGNTKILSYIQGP---TELKKTDEKCS 69
Query: 62 I--EVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
I +V P + +K E ++ ++I +L + N+ ++ + ++ D
Sbjct: 70 IKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERD 129
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
G + AIN AL+DAGI +K+ ++ C I+D +LE
Sbjct: 130 GGIKHAAINTCILALIDAGIAIKYF-ISACSVLYLQNKIIVDGNQLE 175
>gi|322792608|gb|EFZ16508.1| hypothetical protein SINV_11514 [Solenopsis invicta]
Length = 282
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR+ N+ R + I+ +A GSA G+TK++ +V+ P+ K + +
Sbjct: 37 RHDGRSHNEFRNIFLKTGIVSQAKGSAYIEIGNTKIICSVFDPREIPNKTGYCVQGELFC 96
Query: 63 EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P + Q EKEY +IL+R L+ L PN V V+ + G+ L
Sbjct: 97 EFKFAPFSHRKRKLHQQDAEEKEYSLILQRALEPAVCLQEFPNFQVDVYATVIDNGGSAL 156
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AI AA AL +AG+PM L A + Y ++DPT EE
Sbjct: 157 AAAIMAASLALANAGVPMFGLVTASTVGICDQTY-LVDPTDTEE 199
>gi|443703429|gb|ELU00980.1| hypothetical protein CAPTEDRAFT_140943 [Capitella teleta]
Length = 158
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR PN+LR + C + +A GSA QG+TKVLAAVYGP G+K ++A I
Sbjct: 13 RVDGRKPNELRRIQCRMGVFSQADGSAYIEQGNTKVLAAVYGPHEVRGSKSKAIHDQALI 72
Query: 63 EVIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + R + K E + LK+T ++ + + P + + I+V
Sbjct: 73 NCQYSMAVFSTGERRRRPRGDKKSVEMTLHLKQTFEAAILTHLYPRSQIDIFIEV 127
>gi|294464676|gb|ADE77845.1| unknown [Picea sitchensis]
Length = 256
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA---- 60
R+DGR + R ++ A GSA G TKV+ +V+GP+ +K +
Sbjct: 32 RSDGRQLLECRLAFMKTGAVNAAAGSAYAEFGSTKVIVSVFGPRESSKAQIYSDTGRLNC 91
Query: 61 --SIEVIWKPRTGQI--GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
S P G++ G +EY +L + L+ +L P T V V+ G L
Sbjct: 92 SVSFATFSTPIRGKLSQGTEHREYSTMLHKALEGAVMLNTFPKATVDVFALVLESGGGDL 151
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
P I A AL DAGI M + A+ S I+DPT EE G
Sbjct: 152 PVVITCATLALADAGIMMFDVVSAVSVSSIGKSL-IIDPTTEEENCQDG 199
>gi|422348484|ref|ZP_16429377.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
gi|404659400|gb|EKB32252.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 2_1_59BFAA]
Length = 707
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 111/259 (42%), Gaps = 35/259 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP+ S+L R HGSA +++G+T+ L GTK++E
Sbjct: 322 RIDGRDTRTVRPIEIRQSVLPRTHGSALFTRGETQALVLT---TLGTKQDEQIIDGLCEE 378
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + P TG++G P K EI + KR L+++ T V+ +
Sbjct: 379 THDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALKAVLPTAEEFQYTIRVVSE 437
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCILDPTKLEEQKMKG 165
+ +G+ ++ C +++DAG+P+K + + G + +L +E +
Sbjct: 438 ITESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNKFAVLTDILGDEDHLGD 497
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCL----ERGRAA 219
+ V + EG + +Q + GI + A++ + H L E
Sbjct: 498 MDFKVAGTA------EGVTALQMDIKIEGITAEIMQAALAQAHEGRQHILGKMHEMAGGG 551
Query: 220 SAKLSDFLRRSLQSKLPGD 238
+ +LSDF R + K+ D
Sbjct: 552 AKELSDFAPRMISFKIDQD 570
>gi|50556492|ref|XP_505654.1| YALI0F20240p [Yarrowia lipolytica]
gi|49651524|emb|CAG78463.1| YALI0F20240p [Yarrowia lipolytica CLIB122]
Length = 216
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 81
+IL+ GSA W QG T V+ +V GP ++ + P A +E++ +P GQ E +
Sbjct: 2 NILNNVDGSAKWEQG-TSVICSVTGPIETRRRTDEPTLAQVELVIRPAIGQATTRETLIK 60
Query: 82 IILKRTLQSICILTINPNTTTSVIIQVVHDDGAL------LPCAINAACAALVDAGIPMK 135
+ L + + + P ++IQ++ L +NA C AL+D+ PM
Sbjct: 61 DRIYSVLAATVVRNLYPRMLLQIVIQILEQGEGTGYNVLKLAACLNAVCLALIDSRTPMT 120
Query: 136 HLAVAICCCSAESGYCILDPTKLEEQK---MKGFAYLVFPNSILSVLPEGSSLVQGEPME 192
L A+ + IL PT+ + + +Y V N +L S +GE E
Sbjct: 121 GLFTAVAIAIVDDKL-ILHPTRKQVSQSTSTHAVSYFVENNKATGLLMCES---EGEFTE 176
Query: 193 HGIITSVTHGAMSVDD 208
+ + + A + +D
Sbjct: 177 NQLFEVLEQAARACED 192
>gi|256072702|ref|XP_002572673.1| ribonuclease pH related [Schistosoma mansoni]
gi|360044228|emb|CCD81775.1| ribonuclease pH related [Schistosoma mansoni]
Length = 258
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 15/182 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASI- 62
R DGR PN++R + C + + G QG+TKV+A+V GP A K + P+ A+I
Sbjct: 10 RVDGRRPNEIRRVDCQFGSGY-SDGIVFLHQGNTKVIASVVGPHAPRVKGDGTPDGATIT 68
Query: 63 -EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ P G+ K ++ ++ + P + + ++V+ D
Sbjct: 69 CQFTKPPFASTSGERRKLSSKDRSANDFATAIEEIFSCVIRTEKYPMSQIDIFLEVIQSD 128
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ-KMKGFAYLVF 171
G+ CA+NA AL DAGI M L V+ + D + EE ++ +
Sbjct: 129 GSEFACAVNATTLALTDAGIEMDCL-VSAATVGLWGSHVFADLCRFEENPRISQLTVVCL 187
Query: 172 PN 173
PN
Sbjct: 188 PN 189
>gi|297537320|ref|YP_003673089.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
gi|297256667|gb|ADI28512.1| polyribonucleotide nucleotidyltransferase [Methylotenera versatilis
301]
Length = 709
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 23/163 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP++ +L R HGSA +++G+T+ L GT ++E A ++
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA---TLGTGRDEQVIDA-LQG 371
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
+K R TG++G P K EI + KR+L + + + T V+
Sbjct: 372 EFKDRFMLHYNMPPYATGETGRVGTP-KRREIGHGRLAKRSLIAALPDQADFDYTMRVVS 430
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
++ +G+ ++ C AL+DAG+PMK L I + G
Sbjct: 431 EITESNGSSSMASVCGGCLALMDAGVPMKSLVAGIAMGLIKEG 473
>gi|297803290|ref|XP_002869529.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
gi|297315365|gb|EFH45788.1| hypothetical protein ARALYDRAFT_491986 [Arabidopsis lyrata subsp.
lyrata]
Length = 125
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 33/39 (84%)
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
K E+EYE ILK+TLQ+IC+LT+ NT TSVIIQVVHD G
Sbjct: 54 KVEREYETILKKTLQNICVLTVVTNTATSVIIQVVHDGG 92
>gi|320167933|gb|EFW44832.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 229
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 19/167 (11%)
Query: 20 SCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---NENPEKASIEV------IWKPRT 70
S + A+GSA T+V+AAVYGP+ T+ + E+A ++ PR
Sbjct: 2 STGTVSHANGSAYLELAGTRVMAAVYGPRENTRAGGLQQFNEQAVLQCDVARAPFASPRD 61
Query: 71 -GQIGK--------PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
+IG ++++ + LQS L ++ + + ++ DDG L AIN
Sbjct: 62 DARIGTDANTSAAAADRQFATSVATALQSSVRLEKYAKSSIDLFVTIIGDDGGALAAAIN 121
Query: 122 AACAALVDAGIPMKHLAVAICCC-SAESGYCILDPTKLEEQKMKGFA 167
AL DAGI M + A +A + + DPT LEE + A
Sbjct: 122 CCTLALADAGIEMNDMVTAASVALAANTNIVLWDPTHLEESRASAIA 168
>gi|320450042|ref|YP_004202138.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
gi|320150211|gb|ADW21589.1| polyribonucleotide nucleotidyltransferase [Thermus scotoductus
SA-01]
Length = 714
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 19/150 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L R HGSA +++G+T+VL V GT ++E
Sbjct: 325 EGKRADGRTPKDLRPIWIEVDVLPRTHGSAVFTRGETQVLGTV---TLGTGRDEQIIDDL 381
Query: 57 ----PEKASIEVIWKP-RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P TG+ + + E + + KR L+++ T V+
Sbjct: 382 GIDETEKFLVHYNFPPFSTGEVKRLRGVSRREIGHGNLAKRALKAVLPPEEAFPYTIRVV 441
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMK 135
V+ +G+ + A C AL+DAG+P+K
Sbjct: 442 GDVLESNGSSSMATVCAGCLALMDAGVPLK 471
>gi|342879541|gb|EGU80786.1| hypothetical protein FOXB_08653 [Fusarium oxysporum Fo5176]
Length = 250
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 18 ACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPE 77
A S L +A GSA++S G V+AAV GP +++EN +A ++VI +P G G E
Sbjct: 8 AAELSHLAKADGSATFSYGGYAVIAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRE 67
Query: 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINA 122
++ E I++ ++ + + P + +QV + ++P +++
Sbjct: 68 RQLESIMQAAIRQLIPVRDYPRCVIQITLQVAETPENAYVNAKLVQAQLNLPIIPALLHS 127
Query: 123 ACAALVDAGIPMKHLAVA--ICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
A L+ A IP+K + A + E I+DP+ ++ K L F
Sbjct: 128 AILGLLSAAIPLKSIGAATLLAIPEEEGKGIIVDPSAVDIDHAKSVHVLGF 178
>gi|374850064|dbj|BAL53062.1| polynucleotide phosphorylase/polyadenylase, partial [uncultured
Thermus/Deinococcus group bacterium]
Length = 537
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 25/153 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 325 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQIIDDL 381
Query: 57 --------------PEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 102
P ++ EV R + + E + + KR L+++ + T
Sbjct: 382 GIDETDPFLVHYNFPPFSTGEV---KRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTV 438
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMK 135
V+ V+ +G+ + A C AL+DAG+P++
Sbjct: 439 RVVGDVLESNGSSSMATVCAGCLALMDAGVPIR 471
>gi|154346012|ref|XP_001568943.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066285|emb|CAM44076.1| putative exosome complex exonuclease rrp41 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|449310620|gb|AGE92537.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK---AS 61
R DGR P + R + L GS + G +KV A+++GP+ K E +
Sbjct: 14 RLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVT 73
Query: 62 IEVIWKPRTGQI-------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ K ++ + + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGESRRNPQRRSKLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCS 145
INAAC ALVDA + M+ + +CC S
Sbjct: 134 EKVACINAACLALVDANVAMRDV---VCCIS 161
>gi|158300785|ref|XP_552338.3| AGAP011906-PA [Anopheles gambiae str. PEST]
gi|157013328|gb|EAL38841.3| AGAP011906-PA [Anopheles gambiae str. PEST]
Length = 308
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 71/164 (43%), Gaps = 9/164 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR + R ++ A GSA G+TKV+ +V+ P+ K+N+ E +
Sbjct: 43 RKDGRRLQESRKYYAKIGVVSTAKGSAYVELGNTKVIVSVFDPREIPKQNKFCELGELFC 102
Query: 63 EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
++ + P +T Q E+ L L + PN V V+ DDG+ L
Sbjct: 103 DLKFSPFAPAVRKTHQTDARERSMTAALTSALNPSVCRHLFPNLQIDVFANVLEDDGSAL 162
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AI AA AL DA +PM + A ++DPT EE
Sbjct: 163 AVAITAAGLALGDACVPMFDIVTA-ATAGVLGDRVVMDPTAEEE 205
>gi|240279480|gb|EER42985.1| exonuclease RRP41 [Ajellomyces capsulatus H143]
Length = 265
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ K TG G + ++ L+ Q I P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|225708764|gb|ACO10228.1| Exosome complex exonuclease MTR3 [Caligus rogercresseyi]
Length = 278
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%), Gaps = 9/119 (7%)
Query: 5 RADGRNPNQL--RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA-S 61
R DG + RPL C IL ++ GSA +G TKVLA+V+GP+ +KK + A S
Sbjct: 37 RLDGEREKDISVRPLFCEVGILTQSKGSAYLERGRTKVLASVFGPREVSKKLDFSSTAGS 96
Query: 62 IEVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ V +K G+ E++ + L +TL+S L + P + V I V+ DDG+
Sbjct: 97 LNVEYKEAPFASRSDGRGEAKERDVGLFLAQTLRSTVCLHLYPKSRIDVCITVLEDDGS 155
>gi|452211130|ref|YP_007491244.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
gi|452101032|gb|AGF97972.1| Ribonuclease PH [Methanosarcina mazei Tuc01]
Length = 465
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIEVIWKPRTGQI-- 73
+ +L RA GS G K+L V+GP+ A ++++ + A I + + +
Sbjct: 1 MKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIRYRYNMASFSVED 60
Query: 74 ----GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
G + EI + + + + + + P T + ++V+ D AINA+ AL
Sbjct: 61 RARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGTRTAAINASSIAL 120
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
DAGIPMK L + C G +LD K E+
Sbjct: 121 ADAGIPMKGL-ITSCAFGKVDGKIVLDLNKEED 152
>gi|115470767|ref|NP_001058982.1| Os07g0168000 [Oryza sativa Japonica Group]
gi|75118006|sp|Q69LE7.1|PNP1_ORYSJ RecName: Full=Probable polyribonucleotide nucleotidyltransferase 1,
chloroplastic; AltName: Full=Polynucleotide
phosphorylase 1; Short=PNPase 1; Flags: Precursor
gi|50509724|dbj|BAD31776.1| putative polynucleotide phosphorylase [Oryza sativa Japonica Group]
gi|113610518|dbj|BAF20896.1| Os07g0168000 [Oryza sativa Japonica Group]
Length = 902
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G ++ E
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507
Query: 58 EKASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + ++ +R L+ I + T V +
Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 567
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 568 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 599
>gi|225562674|gb|EEH10953.1| exonuclease [Ajellomyces capsulatus G186AR]
Length = 292
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ K TG G + ++ L+ Q I P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|255569434|ref|XP_002525684.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
gi|223534984|gb|EEF36667.1| polyribonucleotide nucleotidyltransferase, putative [Ricinus
communis]
Length = 948
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKKNENP------ 57
R+DGRN + +RP+ C +L RAHGSA +++G+T+ LA A G K +K +N
Sbjct: 450 RSDGRNADGIRPINSRCGLLPRAHGSALFTRGETQSLAVATLGDKQMAQKVDNLVDVDEF 509
Query: 58 EKASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P + G++G P + + ++ +R L+ I + T V +
Sbjct: 510 KRFYLQYSFPPSSVGEVGRMGAPSRREIGHGMLAERALEPILPSEADFPYTIRVESTITE 569
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 570 SNGSSSMASVCGGCLALQDAGVPVK 594
>gi|340522690|gb|EGR52923.1| predicted protein [Trichoderma reesei QM6a]
Length = 287
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 85/200 (42%), Gaps = 42/200 (21%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP---KAGTKKNE------ 55
R DGR N LR L A GS+ G TKV+ V GP +AG +K
Sbjct: 14 RIDGRRWNDLRRLHAQIHTQEAADGSSYLEMGHTKVMCVVTGPAEPQAGQQKRGTTGGGG 73
Query: 56 ---------------NPEKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSI 91
+ ASI V + + R G+ + +E EI +++ L +
Sbjct: 74 GGGGAAAAGGALGAGQKDAASIVVNVVVAGFSSVDRKRRGRNDRRIQEMEITIQKALAAN 133
Query: 92 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151
+ P++T +V + V+ DG+LL INA AL+DAGIPM A C + S Y
Sbjct: 134 LHTHLFPHSTITVSLHVLSQDGSLLAALINATTLALIDAGIPMTDYITA-CTAGSTSSYA 192
Query: 152 --------ILDPTKLEEQKM 163
+LD EEQ++
Sbjct: 193 AGDDSADPLLDLNTQEEQEL 212
>gi|325092610|gb|EGC45920.1| exonuclease RRP41 [Ajellomyces capsulatus H88]
Length = 291
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ K TG G + ++ L+ Q I P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|398024542|ref|XP_003865432.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
gi|322503669|emb|CBZ38755.1| exosome complex exonuclease rrp41, putative [Leishmania donovani]
Length = 246
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P + R + + L GS + G +KV A V+GP+ K E +
Sbjct: 14 RLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVT 73
Query: 63 -EVIWKPRTGQIGK-PEKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ + P++ ++ + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQKDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAAC AL+DA + M+ A+CC A
Sbjct: 134 EKIACVNAACLALIDANVAMRD---AVCCIDA 162
>gi|384499406|gb|EIE89897.1| hypothetical protein RO3G_14608 [Rhizopus delemar RA 99-880]
Length = 135
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 10/121 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR N+LR + S+ +A GSA QG+TK LAAVYGP+ + + ++A I
Sbjct: 13 RVDGRRANELRKITAKTSVFSQADGSAYIEQGNTKCLAAVYGPREVRHRMQALSDRAIIN 72
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + + + K E +++T + + + T P + + +QV +DG
Sbjct: 73 VEFNIAPFSTSERKKRSKNDKRSLEVAAFIRQTFEPVVLTTQFPRSQIDIYLQVFQNDGG 132
Query: 115 L 115
+
Sbjct: 133 I 133
>gi|328859073|gb|EGG08183.1| hypothetical protein MELLADRAFT_105134 [Melampsora larici-populina
98AG31]
Length = 285
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 5/179 (2%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R+DGR Q RP+ ++ A+GS+ D K++ AVYGPK T N + +I
Sbjct: 50 RSDGRTNQQFRPIHVKTKVVSSANGSSYLETTDCKLICAVYGPKPRTTANSSSSNLNIHF 109
Query: 65 IWKP--RTGQIGKPEKEYEIILKRTL-QSIC-ILTINPNTTTSVIIQVVHDDGAL-LPCA 119
+ P + E L + L QS+ L +NP + + V+ L +
Sbjct: 110 KFTPFSLSTSFTSSISTLESNLSQALHQSLAPSLLLNPTEFYDLHLTVLQSHSPLSITHP 169
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSV 178
I AA AL AG+P L + I + ++DPT +E Q L + SI SV
Sbjct: 170 ILAATIALGSAGVPTLGLVIGISAAISSDLELLIDPTFIESQNALAHLDLSYLTSIDSV 228
>gi|125557368|gb|EAZ02904.1| hypothetical protein OsI_25038 [Oryza sativa Indica Group]
Length = 865
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G ++ E
Sbjct: 411 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 470
Query: 58 EKASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + ++ +R L+ I + T V +
Sbjct: 471 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 530
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 531 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 562
>gi|157877098|ref|XP_001686881.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
gi|68129956|emb|CAJ09264.1| putative exosome complex exonuclease rrp41 [Leishmania major strain
Friedlin]
Length = 246
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR P + R + + L GS + G +KV A V+GP+ K E +
Sbjct: 14 RLDGRRPLEARRMDIAFGTLSACDGSCDITLGQSKVCACVFGPRESLHKQEAKHDKGLVT 73
Query: 63 -EVIWKPRTGQIGK-PEKEYEI------ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ + P++ ++ + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGENRRNPQRRSKLSEDIGAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAAC AL+DA + M+ A+CC A
Sbjct: 134 EKIACVNAACLALIDANVAMRD---AVCCIDA 162
>gi|315051732|ref|XP_003175240.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
gi|311340555|gb|EFQ99757.1| exosome complex exonuclease RRP41 [Arthroderma gypseum CBS 118893]
Length = 278
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS--I 62
R DGR N+LR L S + GS+ S G+T VL V+GP G K++E A I
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTAVLCTVHGPAEG-KRSETAGAAGAVI 73
Query: 63 EVIW------------KPRTGQIG---KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
V+ K TG G + E +L+ Q + P +T S+ +
Sbjct: 74 NVVVNLAGFANVDRKKKSATGSGGGDRQATTELANLLRDAFQPHIHAHLYPRSTISIHVS 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPM 134
V+ DG+L +NA ALVDAGIPM
Sbjct: 134 VLSSDGSLFAACLNACTLALVDAGIPM 160
>gi|154279662|ref|XP_001540644.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412587|gb|EDN07974.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 291
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ K TG G + ++ L+ Q I P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKKSATGGGGDRQASTDLAFALRDAFQPHLHTHIYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|449310644|gb|AGE92549.1| exosome complex exonuclease RRP41 [Leishmania braziliensis]
Length = 246
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK---AS 61
R DGR P + R + L GS + G +KV A+++GP+ K E +
Sbjct: 14 RLDGRRPLEARRMDIVFGTLSACDGSCDITVGQSKVCASIFGPRESLHKQEAKHDKVLVT 73
Query: 62 IEVIWKPRTGQIGK-PEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV G+ + P++ + + + + +S+ +L+ PN+ + I+V+ DG
Sbjct: 74 CEVAVAAFAGESRRNPQRRSRLSEDIDAAVVQVARSVILLSQYPNSQIHIYIEVLQQDGN 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCS 145
INAAC ALVDA + M+ + +CC S
Sbjct: 134 EKVACINAACLALVDANVAMRDV---VCCIS 161
>gi|242047540|ref|XP_002461516.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
gi|241924893|gb|EER98037.1| hypothetical protein SORBIDRAFT_02g003900 [Sorghum bicolor]
Length = 877
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY--GPKAGTK-----KNENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G + + E+
Sbjct: 424 RSDGRSPWELRPINSQCGLLPRAHGSALFTRGETQSLAVVTLGGYQMAQRIDNLVDTEDS 483
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P G+IG P + + ++ +R L+ I + T V +
Sbjct: 484 KSFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 543
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 544 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 575
>gi|146414860|ref|XP_001483400.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
gi|146391873|gb|EDK40031.1| hypothetical protein PGUG_04129 [Meyerozyma guilliermondii ATCC
6260]
Length = 221
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 20 SCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKE 79
S SIL + GS+ + G TKV+ +V GP ++E P ++S E+I +P G EK
Sbjct: 6 STSILTKVDGSSQLTVGGTKVVVSVTGPIEPKLRHELPTQSSFEIIIRPAVGVSSTREKL 65
Query: 80 YEIILKRTLQSICILTINPNTTTSVIIQVV-------HDDGALLPCAINAACAALVDAGI 132
E L LQ++ NP ++IQ + H + L A NA AL+DA +
Sbjct: 66 MEDKLLSLLQNVIARFQNPRQLIQIVIQFLITEPIPNHYTNSQLSAAANACYYALIDANV 125
Query: 133 PM 134
P+
Sbjct: 126 PL 127
>gi|270009587|gb|EFA06035.1| hypothetical protein TcasGA2_TC008865 [Tribolium castaneum]
Length = 300
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 28/185 (15%)
Query: 5 RADGRNPNQLRP------------------LACSCSILHRAHGSASWSQGDTKVLAAVYG 46
RADGR + R L ++ +A GSA TKV+ +V+
Sbjct: 42 RADGRTSTEHRKICNLSLGPCVFLDLIFNFLVLKTGVVSQAKGSAYIELDQTKVIVSVFD 101
Query: 47 PKAGTKKNENPEKASI--EVIWKP------RTGQIGKPEKEYEIILKRTLQSICILTINP 98
P+ K + K I E + P R Q E+++ I+K+ L+S P
Sbjct: 102 PREIPNKTDYSSKGEIYCEFKFAPFSCHKRRLHQQDAEEQQFSAIMKQALESAVFRHEFP 161
Query: 99 NTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKL 158
N + V+H+DGA L AI AA AL AGIPM L ++ + + + ++DPT L
Sbjct: 162 NFQVDIYAMVLHNDGAALSAAITAAGVALAHAGIPMYDLITSV-TLAVQGNHLLVDPT-L 219
Query: 159 EEQKM 163
EE+++
Sbjct: 220 EEERL 224
>gi|125599245|gb|EAZ38821.1| hypothetical protein OsJ_23227 [Oryza sativa Japonica Group]
Length = 778
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 14/151 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G ++ E
Sbjct: 324 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 383
Query: 58 EKASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + ++ +R L+ I + T V +
Sbjct: 384 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 443
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAI 141
+G+ ++ C AL DAG+P+K I
Sbjct: 444 SNGSSSMASVCGGCLALQDAGVPIKFPVAGI 474
>gi|300121002|emb|CBK21384.2| unnamed protein product [Blastocystis hominis]
Length = 204
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 36 GDTKVLAAVYGPK-AGTKKNEN--PEKASIE--VIWKPRTG-------QIGKPEKEYEII 83
G+TKVLA VYGP+ AG+K + + +KA++ V P G + EY
Sbjct: 2 GNTKVLAVVYGPRDAGSKSSHDIDNDKATVSAGVTMAPYCGTERRVVHMNSRICTEYAQA 61
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 141
++R + + + T+ P++T S+ + DG LPC +NAA A++DAGI + V++
Sbjct: 62 IRRCFEHVILTTLYPHSTISIHCTIFQADGGELPCCLNAALLAIIDAGIDILDFQVSL 119
>gi|308481795|ref|XP_003103102.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
gi|308260478|gb|EFP04431.1| hypothetical protein CRE_25738 [Caenorhabditis remanei]
Length = 256
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 73/190 (38%), Gaps = 21/190 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY--------------- 45
ME D + R+ RPL C + GS G+T+VLA +Y
Sbjct: 23 METDDVEKRSATAFRPLCVKCGVFGAQDGSGYAEFGNTRVLAQMYEKKHLTSVNKLYNFS 82
Query: 46 -GPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSV 104
GP+ K E K +I + ++ E L +L ++ + P +
Sbjct: 83 TGPEGDGKWEEAHAKVTITLKGVENETKVA----ELRADLTSSLSAVIFINKYPGKVIDI 138
Query: 105 IIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE-EQKM 163
+ V+ DDG +L AI A AL +GI L + +G I DP+ E E +
Sbjct: 139 EVTVLSDDGGVLSTAITAVTLALAHSGIEHMGLTASAHVALKSNGDYITDPSTSEAEDAI 198
Query: 164 KGFAYLVFPN 173
G + PN
Sbjct: 199 GGVTFAFVPN 208
>gi|403349665|gb|EJY74273.1| RNase PH [Oxytricha trifallax]
Length = 252
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK----------- 53
R +GR ++R + C ++ GSA + G+TKV+A + GP T++
Sbjct: 14 RMNGRKLLEIRDIKCQLGVMKNTSGSALFEIGNTKVVAFLQGPHQITQRQAQSLGVNQSN 73
Query: 54 ----NENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
N N + I + KE+ ++K + + L + P + + + V+
Sbjct: 74 RGILNVNFFVTNFSAIEHRADVKKDAKMKEFTRMIKSVFEQVIQLDLYPRSQLDLQVFVL 133
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVA 140
DG A NA AL+D GI MK VA
Sbjct: 134 ESDGGYRSAAFNAVSMALMDGGIAMKDFVVA 164
>gi|367052063|ref|XP_003656410.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
gi|347003675|gb|AEO70074.1| hypothetical protein THITE_2097043 [Thielavia terrestris NRRL 8126]
Length = 253
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 19 CSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK 78
+ IL RA GSA +S V +V GP +++E+ +A ++VI +P G G E+
Sbjct: 9 AALGILPRADGSAKYSHAGYTVTGSVNGPIEAQRRDEHAYEAHVDVIVRPAAGVGGTRER 68
Query: 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAA 123
E IL+ +L + ++ P + +++QV + + +++P + A
Sbjct: 69 HLESILQSSLSQLILVKDFPRSLIQIVLQVENSPENDYVDTKLVQASLNFSIMPALLQTA 128
Query: 124 CAALVDAGIPMKHLAVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVF 171
AL+ A +PM+ A A A+ G I+DP+ + + L F
Sbjct: 129 VLALLSAAVPMRATATATAIAVAQQGDHKKTIIDPSPRDIETAHSVHVLAF 179
>gi|164428624|ref|XP_964355.2| hypothetical protein NCU00812 [Neurospora crassa OR74A]
gi|157072219|gb|EAA35119.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 257
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + A GS+ G TKV+ V GP P + +
Sbjct: 14 RVDGRRWNELRRIHAQIRTQAAADGSSYLEMGHTKVMCVVNGPS-----EPGPRRGATSG 68
Query: 65 IWKPRTGQIGKPEKEYEIIL--------KRTLQSICILT-INPNTTTSVIIQVVHDDGAL 115
Q E I++ KR + + T + P++T ++ + V+ DG+L
Sbjct: 69 GGGGGG-QSKNAEVAVNIVIAGFSSVDRKRRGRGDNLHTHLFPHSTINISLHVLSQDGSL 127
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFA 167
L INAA A VDAGIPM VA C + S Y +LD EEQ++ G
Sbjct: 128 LAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLLDMNHQEEQELPGLT 186
Query: 168 YLVFPNS 174
+S
Sbjct: 187 VATLGDS 193
>gi|410697463|gb|AFV76531.1| polyribonucleotide nucleotidyltransferase [Thermus oshimai JL-2]
Length = 714
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 25/158 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 328 RADGRGPKDLRPIWIEVDVLPRAHGSAIFTRGETQVLGTV---TLGTGRDEQIIDDLGID 384
Query: 57 -----------PEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
P ++ EV R + + E + + KR L+++ + T V+
Sbjct: 385 ETDPFLVHYNFPPFSTGEV---KRLRGVSRREVGHGNLAKRALRAVLPKEEDFPYTIRVV 441
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 143
V+ +G+ + A C AL+DAG+P++ +
Sbjct: 442 GDVLESNGSSSMATVCAGCLALMDAGVPIRRPVAGVAM 479
>gi|302925936|ref|XP_003054194.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735135|gb|EEU48481.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 250
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 54/254 (21%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYE 81
S L +A GSA++S G ++AAV GP +++EN +A ++VI +P G G E++ E
Sbjct: 12 SHLPKADGSATFSYGGYTIVAAVNGPVEAQRRDENAFEALVDVIVRPAAGVGGTRERQLE 71
Query: 82 IILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCAINAACAA 126
IL+ L+ + + P + +QV + ++P +++A +
Sbjct: 72 SILQAALRQLIPVRDYPRCVIQITLQVAETPENAYVNTKLSQSQLNLPIIPALLHSAILS 131
Query: 127 LVDAGIPMKHLAVA-ICCCSAESGY-CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSS 184
L+ A I +K + A + E G I+DPT +E K L F + +L E
Sbjct: 132 LLSAAISLKAIGAATVLAIPEEEGKDIIVDPTAVEVDHAKSVHALGFTSHDELLLAE--- 188
Query: 185 LVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR-------------------AASAKLSD 225
+ G+ S D++ L+ G+ S ++
Sbjct: 189 ---------------SEGSFSPDEWAKVLQLGQRICCEHQQPGFDTSMAGNDLESKSMTQ 233
Query: 226 FLRRSLQSKLPGDL 239
F+R +++K+ DL
Sbjct: 234 FIRSVMEAKVAEDL 247
>gi|294655825|ref|XP_458018.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
gi|199430635|emb|CAG86078.2| DEHA2C07766p [Debaryomyces hansenii CBS767]
Length = 235
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 16/134 (11%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ S+L R GSA S G TKV+ +V GP + E P AS+E+I +P G
Sbjct: 3 FEVNTSVLSRVDGSAELSVGTTKVITSVTGPIEPKIRQELPNLASLEIIVRPSLGVSTTR 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQV------VHDDGA----------LLPCAI 120
EK E L+ LQSI I P +++Q ++D+G+ L AI
Sbjct: 63 EKALEDKLRSILQSIIIRYKYPRQLIQIVVQFLITENNINDNGSNQHNKDFTSTELNAAI 122
Query: 121 NAACAALVDAGIPM 134
N AL+DA I +
Sbjct: 123 NCCYFALIDANIAL 136
>gi|384491910|gb|EIE83106.1| hypothetical protein RO3G_07811 [Rhizopus delemar RA 99-880]
Length = 255
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 88/196 (44%), Gaps = 15/196 (7%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
E R D R LR + ++ +A+GSA G+TKV AVYGP+ KK+ + +
Sbjct: 31 ERKRLDNRGLEDLRAIFLKPGLVTQANGSAYIEVGNTKVACAVYGPRQ-LKKSSFSQNGT 89
Query: 62 IEVIWK-------PRTGQIGKP-EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ +K R + P EKE+ IL + L L + P +T + I V+ DG
Sbjct: 90 LNCDFKFSPFSCVKRRSAVRDPEEKEFSQILIQALSPAVRLELLPKSTIDIYINVLESDG 149
Query: 114 --ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
+ L AI A+ AL DAGI M V C ++D T+ EE + G L F
Sbjct: 150 TSSCLAAAIVASSIALADAGIEMLD-QVTACSSVFAQDQILMDGTEREESQKDGSLVLSF 208
Query: 172 P---NSILSVLPEGSS 184
N + +L G S
Sbjct: 209 MPSLNEVTHILQIGQS 224
>gi|321262691|ref|XP_003196064.1| 3'-to-5' phosphorolytic exoribonuclease; Ski6p [Cryptococcus gattii
WM276]
gi|317462539|gb|ADV24277.1| 3'-to-5' phosphorolytic exoribonuclease, putative; Ski6p
[Cryptococcus gattii WM276]
Length = 262
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 10/140 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R D R P +LR + S + GS++ +QG T V+ +V+GP+ ++ + ++A +
Sbjct: 15 RQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVVVSVFGPREPRNRSLASHDRAVVS 74
Query: 64 VI-----WKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V W R + K +E +++T + + + + P + ++ +QV+ DG
Sbjct: 75 VEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGG 134
Query: 115 LLPCAINAACAALVDAGIPM 134
+LP +INA AL+DAGI +
Sbjct: 135 ILPTSINATTLALIDAGISL 154
>gi|365760630|gb|EHN02338.1| Rrp46p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 240
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 20/220 (9%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
+L GS+ + DTK++ +V GP + E P + ++E+I +P G EK E
Sbjct: 1 MLDNVDGSSQFVSQDTKIICSVTGPIEAKARQELPTQLALEIIVRPAKGVATTREKLLED 60
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMK 135
L+ L + P + Q++ D+ L C INAA LVDAGI M
Sbjct: 61 KLRAVLTPLIARYCYPRQLCQITCQILESGEDEPEFSLRELSCCINAAFLGLVDAGIAMN 120
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I +S I +PT +++K + +SV V G +
Sbjct: 121 SMCASIPIAIMKDSNEIIANPTA---EQLK---------TSVSVHTLALEFVDGGNVIKN 168
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++ ++G + D F+ LE G +L LR+ + +
Sbjct: 169 VLLLDSNGDFNEDQLFNVLELGEQKCQELVQDLRKIIHGR 208
>gi|440300726|gb|ELP93173.1| exosome complex exonuclease RRP46, putative [Entamoeba invadens
IP1]
Length = 226
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV-IW 66
+ ++R L+ + ++ G + QG T V+A V P+ K E P A ++V +
Sbjct: 11 AKESGKIRALSYQREVNTKSDGCYMFHQGKTCVIAGVNAPRNTLKSKEQPNTAYVDVQFY 70
Query: 67 KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAA 126
+ Q GK + E E ++ ++ + P +V IQ V DDG + +NA +
Sbjct: 71 EKVAAQQGKRKTELEEFVRSGVEWAVLCEKYPRGLINVCIQTVKDDGCVESVGMNATMTS 130
Query: 127 LVDAGIPMKHLAVAIC 142
L+ +G+ MK + V +C
Sbjct: 131 LLYSGVDMKSIVVGMC 146
>gi|66824695|ref|XP_645702.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
gi|60473889|gb|EAL71828.1| hypothetical protein DDB_G0271396 [Dictyostelium discoideum AX4]
Length = 217
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 10/147 (6%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE-----VIWKPRTGQI---- 73
++ + GS+ +TKVL ++GP+A T+K E E A + + T +I
Sbjct: 5 VVSQGSGSSYVEMENTKVLCTIHGPRA-TQKTELFETAKLNCELKYTTFSSTTEKIDYVE 63
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
EK+ +++ +++ L P T + I V++DDG +L +I AA AL DAG+
Sbjct: 64 NSKEKDLSLLISQSIIGSIRLEKYPKTAIDIYILVLNDDGNVLVASITAATMALADAGVE 123
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEE 160
M + + + ++DPT LEE
Sbjct: 124 MFDMVSSCSVSCTKDNRTLIDPTTLEE 150
>gi|340052331|emb|CCC46607.1| putative exosome complex exonuclease 1 [Trypanosoma vivax Y486]
Length = 270
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 31/188 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR ++R S L + GS+ +SQG T V AV GP A +++ S++V
Sbjct: 7 RRDGRGRCEMRKKEMRISDLSQFDGSSWYSQGLTAVCVAVNGPVAAKQEDYRKCVVSVQV 66
Query: 65 IWKPRTGQIGKPEK---------------EYEIILKRTLQSICILTINPNTTTSVIIQVV 109
R G ++ E L +++I L P V + V+
Sbjct: 67 THASRIPPAGGADRLCVIQKQEQQRREDGEIGQFLTSIVEAIVRLERFPRCVLQVHVTVL 126
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAIC--CCSAESG--------------YCIL 153
+DG+LL A N AL+DAG+P + A+C CS + +L
Sbjct: 127 FNDGSLLAVATNGLMCALLDAGVPCRTTVAAVCLLACSTDGNDQKNSSTEQVSSTPVLLL 186
Query: 154 DPTKLEEQ 161
DPT EE+
Sbjct: 187 DPTLAEEE 194
>gi|320582632|gb|EFW96849.1| hypothetical protein HPODL_1559 [Ogataea parapolymorpha DL-1]
Length = 222
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
L + GSAS+ G TKV+++V GP ++ +NE P KA +++ +P +G E E
Sbjct: 10 LDQVDGSASYEFGATKVISSVTGPIESARPRNELPTKAYLDINIRPSSGVPSTRETLLEH 69
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHD------DGALLPCAINAACAALVDAGIPMKH 136
L + L ++ L P T + +Q++ + L IN+ AL+++GI +K
Sbjct: 70 KLGQLLPTVINLDQYPRQTIQIAVQILKNGEPKEYTARQLVAIINSVFVALINSGISLKS 129
Query: 137 LAVAICCCSAESGYCILDPT 156
+A CC + G PT
Sbjct: 130 SFMATCCSISTEGEIKTSPT 149
>gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales
bacterium 1_1_47]
Length = 724
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ +L RAHGSA +++G+T+ L GTK++ E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVT---TLGTKQDEQIVDGLTGE 378
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
E+ + P TG++G P K EI + KR L ++ + T V+ +
Sbjct: 379 QRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALTAVLPNEEDFQYTMRVVSE 437
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+ +G+ ++ C +L+DAG+P+K + + G
Sbjct: 438 ICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEG 479
>gi|254580403|ref|XP_002496187.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
gi|238939078|emb|CAR27254.1| ZYRO0C12496p [Zygosaccharomyces rouxii]
Length = 224
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 20/234 (8%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ S IL+ GS+ + TKV+ +V GP + E P + ++E+I +P G
Sbjct: 3 IIASTGILNHVDGSSEFESHSTKVVCSVTGPIEPKARQELPTQLALEIIVRPAKGVPNTR 62
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD-------DGALLPCAINAACAALVD 129
EK E L+ L + + P + QV+ L C INAA ALVD
Sbjct: 63 EKLIEDKLRGVLTPLIARYLYPRRLCQITFQVMEAGEPELEFSQRELSCCINAAVLALVD 122
Query: 130 AGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGE 189
+GI + +A ++ + G ++DP + Q+ + L L + G ++
Sbjct: 123 SGIGLLAMASSVPLAIIK-GQLVVDPNAQQLQESQSVHTLA-----LEITESGKNV---- 172
Query: 190 PMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSKAE 243
I+ + GA + ++ F L +G L LR+ L ++ ++ + +
Sbjct: 173 ---QNILLLDSTGAFTQNELFQILSQGEERCLTLVQELRKVLGDRINSEIIRTK 223
>gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella
excrementihominis YIT 11859]
Length = 735
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ +L RAHGSA +++G+T+ L GTK++ E
Sbjct: 333 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVT---TLGTKQDEQIVDGLTGE 389
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
E+ + P TG++G P K EI + KR L ++ + T V+ +
Sbjct: 390 QRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALTAVLPNEEDFQYTMRVVSE 448
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+ +G+ ++ C +L+DAG+P+K + + G
Sbjct: 449 ICESNGSSSMASVCGGCLSLLDAGVPLKDFVAGVAMGLIKEG 490
>gi|296136710|ref|YP_003643952.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
gi|295796832|gb|ADG31622.1| polyribonucleotide nucleotidyltransferase [Thiomonas intermedia
K12]
Length = 719
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR+ +RPL+ S+L R HGSA +++G+T+ LA A G + E +
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L ++ + T V+ +V
Sbjct: 375 RFLLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALLAVLPKKEDFAYTMRVVSEVTE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A +A+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVL 478
>gi|116181272|ref|XP_001220485.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
gi|88185561|gb|EAQ93029.1| hypothetical protein CHGG_01264 [Chaetomium globosum CBS 148.51]
Length = 277
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 78/201 (38%), Gaps = 32/201 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK--------------AG 50
R DGR N+LR + A GS+ G TKV+ V GP G
Sbjct: 14 RVDGRRWNELRRVNAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGVGGAGGGG 73
Query: 51 TKKNENPEKASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 101
KA I V + + R G+ K E + L + + P++
Sbjct: 74 GGGGGAGGKAEIVVGIVIAGFSSVDRKRHGRGDKRTLELASTVANALAASLHTHLFPHSQ 133
Query: 102 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------IL 153
+V + V+ DG+LL INAA A VDAGIPM VA C + S Y +L
Sbjct: 134 INVSLHVLSQDGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLL 192
Query: 154 DPTKLEEQKMKGFAYLVFPNS 174
D EEQ++ G S
Sbjct: 193 DLNHQEEQELPGLTVATLGES 213
>gi|348617851|ref|ZP_08884385.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816795|emb|CCD29035.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 704
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 37/260 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP++ +L RAHGSA +++G+T+ LA GTK +E A IE
Sbjct: 322 RIDGRSTRAVRPISIRSGVLPRAHGSALFTRGETQALAVT---TLGTKSDEQMIDA-IEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + +R L + + T V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGAP-KRREIGHGRLARRALAPVLPDEQSFGYTIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ AL+DAG+P+K H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGSLALMDAGVPVKAHVAGIAMGLILEGNRFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + +G + +Q + G+ + A++ + H LE+ + A A
Sbjct: 497 DMDFKVAGTA------QGITALQMDIKIAGVTEEIMRIALAQAREGRLHILEQMQGAIAG 550
Query: 222 ---KLSDFLRRSLQSKLPGD 238
+LS F R + ++P D
Sbjct: 551 ARSELSTFAPRMVTIRIPTD 570
>gi|328875321|gb|EGG23686.1| hypothetical protein DFA_05820 [Dictyostelium fasciculatum]
Length = 307
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 10/147 (6%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
+ + R+ Q R + ++ +A GSA +TKV+ +V+GP+A + K E E A
Sbjct: 49 IKKRTNRSEEQFRQIFMKTGVVSQASGSAYIEIENTKVICSVHGPRA-SPKTELFESAKF 107
Query: 63 EVIWK----PRTGQI-----GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
K R G+ EK+ I L++++ L P T V + V++DDG
Sbjct: 108 SCELKFASFARPGERIDYMESAKEKDLSINLRQSIIGAIRLEKYPKTVIDVYVMVLNDDG 167
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVA 140
+L AI AA AL DAG+ M + A
Sbjct: 168 GVLVAAITAASMALADAGVEMYDMVSA 194
>gi|410694440|ref|YP_003625062.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
gi|294340865|emb|CAZ89260.1| Polyribonucleotide nucleotidyltransferase (Polynucleotide
phosphorylase) (PNPase) [Thiomonas sp. 3As]
Length = 719
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR+ +RPL+ S+L R HGSA +++G+T+ LA A G + E +
Sbjct: 315 RIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQDAQIIDALGGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L ++ + T V+ +V
Sbjct: 375 RFLLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALLAVLPKKEDFAYTMRVVSEVTE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A +A+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVL 478
>gi|296810936|ref|XP_002845806.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
gi|238843194|gb|EEQ32856.1| exosome complex exonuclease RRP41 [Arthroderma otae CBS 113480]
Length = 298
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 77/185 (41%), Gaps = 20/185 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR L S + GS+ S G+T VL V+GP G + ++
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLSMGNTTVLCTVHGPAEGKRSETAGATGAVIS 74
Query: 65 IWKPRTG--QIGKPEK--------------EYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ G + + +K E +++ Q + P +T S+ + V
Sbjct: 75 VVVNLAGFANVDRKKKSAAGGGGGDRQATTELANLIRDAFQPHIHAHLYPRSTISIHVSV 134
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS-AESGYCILDPTKLEEQKMKGFA 167
+ DG+L +NA ALVDAGIPM L +C C+ SG E +M G
Sbjct: 135 LSSDGSLFAACLNACTLALVDAGIPMPGL---LCACTVGMSGRASTPAVTAESAQMGGVN 191
Query: 168 YLVFP 172
+ P
Sbjct: 192 ETLDP 196
>gi|357017365|gb|AET50711.1| hypothetical protein [Eimeria tenella]
Length = 299
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P ++RP+ L A GSA S G+TKV A++GP++ + + ++ I+V
Sbjct: 44 RRDGRLPEEVRPMHLQTLSLGSASGSAFVSVGNTKVYCAIFGPRSAGRSDLQ-DRGFIKV 102
Query: 65 ------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
++ + G+ +++ ++L + L S +L P + V + +DG L
Sbjct: 103 DYRGSPFFQRSSADGGETQEQLLLLLHQALDSCVLLERYPKSVLEVSFMFLEEDGGALAA 162
Query: 119 AINAACAALVDAGI 132
A+ A AL DAG+
Sbjct: 163 ALTCAGLALADAGV 176
>gi|157114057|ref|XP_001657962.1| hypothetical protein AaeL_AAEL006697 [Aedes aegypti]
gi|108877466|gb|EAT41691.1| AAEL006697-PA [Aedes aegypti]
Length = 307
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
GR N+ R ++ A GS G+TKV+ +V+ P+ K+N+ + +K
Sbjct: 45 GRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFK 104
Query: 68 --------PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
+ Q E+ + + LQ + + PN + V+ DDG++L
Sbjct: 105 FSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAV 164
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DA I M + A E LDPT EE+
Sbjct: 165 ITAAGLALSDATISMFDIVTASTVAVIEDK-IYLDPTLAEER 205
>gi|254168384|ref|ZP_04875229.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
gi|197622665|gb|EDY35235.1| exosome complex exonuclease 1 [Aciduliprofundum boonei T469]
Length = 208
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 14/197 (7%)
Query: 27 AHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIEVIWKPRTGQIGKPEK------- 78
A GSA G K++AAVYGP +A K + ++A + + + + ++
Sbjct: 1 ADGSAFIEWGGNKIIAAVYGPHEAYPKHVQEADRAIVRARYSMAPFSVDERKRPGPDRRA 60
Query: 79 -EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHL 137
E ++ L+S+ + P T+ V I+V+ D I A AL DAGIPM+ L
Sbjct: 61 IELSKVISEALESVIFVEKYPRTSIDVYIEVLQADAGTRVAGITVASLALADAGIPMRDL 120
Query: 138 AVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT 197
V C +LD K E+ F P +I+ E + L M + +T
Sbjct: 121 IVG-CAAGKIDDVVVLDLNKEEDN----FGQADVPMAIMPRTKEIALLQMDGDMSYEELT 175
Query: 198 SVTHGAMSVDDYFHCLE 214
+ AM + H ++
Sbjct: 176 TAMDMAMDAAEKIHEMQ 192
>gi|319944048|ref|ZP_08018328.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
gi|319742809|gb|EFV95216.1| polyribonucleotide nucleotidyltransferase [Lautropia mirabilis ATCC
51599]
Length = 704
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 116/255 (45%), Gaps = 33/255 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP++ +L RAHGSA +++G+T+ L GT ++E
Sbjct: 315 RIDGRDTRTVRPISIRTGVLPRAHGSALFTRGETQALVVA---TLGTARDEQIIDAITGE 371
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQV 108
E+ ++ P TG+IG P++ + + KR + ++ + + ++ ++
Sbjct: 372 YRERFMMQYNMPPYATGETGRIGTPKRREVGHGRLAKRAITALVPSQEDFAYSIRLVSEI 431
Query: 109 VHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C AL+DAG+P+ +H+A +A+ + + +L +E +
Sbjct: 432 TESNGSSSMASVCGGCLALMDAGVPVERHVAGIAMGLIKEGNKFAVLTDILGDEDHLGDM 491
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AAS 220
+ V +G + +Q + GI + A++ + H L + + AA
Sbjct: 492 DFKVAGTE------QGVTALQMDIKIQGITREIMQVALAQAREARMHILGKMQEAIPAAR 545
Query: 221 AKLSDFLRRSLQSKL 235
+LSDF R Q K+
Sbjct: 546 TELSDFAPRMYQMKI 560
>gi|261332827|emb|CBH15822.1| RRP41p homologue, putative [Trypanosoma brucei gambiense DAL972]
Length = 252
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPEKAS 61
R DGR PN+ R LA + G + G + V A VYGP+ + + + N +
Sbjct: 14 RLDGRRPNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTIT 73
Query: 62 IEVIWKPRTGQIGKPEKEY----EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGA 114
+V+ G+ + ++ Y E I L +S+ +L+ PN+ + I+V+ DG+
Sbjct: 74 CDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHL 137
INAAC AL+DA I M+ +
Sbjct: 134 DKAACINAACLALIDASIAMRDV 156
>gi|326533940|dbj|BAJ93743.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 897
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+ +LRP+ C IL RAHGSA +++G+T+ LA V G ++ E
Sbjct: 447 RSDGRSACELRPINSQCGILPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 506
Query: 58 EKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P RTG + E + ++ +R L+ I ++ T V +
Sbjct: 507 KSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPPEVDFPYTIRVESTITE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 598
>gi|156537299|ref|XP_001606070.1| PREDICTED: exosome complex component MTR3-like [Nasonia
vitripennis]
Length = 284
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R D R +LR + ++ +A GSA G TKV+ + + P+ K + I
Sbjct: 39 RVDSRKHKELRKMFIKLGVVSQAKGSAYIEMGQTKVICSAFDPREIPNKTSYSTQGEIFC 98
Query: 65 IWK-------PRTG-QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
+K R G Q EKEY +I++R L+ PN V V+ + G+ L
Sbjct: 99 EFKFASFATCKRKGHQQDTEEKEYSLIMQRALEPAVCRHEFPNFQVDVYALVLDNGGSAL 158
Query: 117 PCAINAACAALVDAGIPMKHLAVAI 141
AI A AL +A +PM + A+
Sbjct: 159 GAAIMGASLALANASVPMFGIVTAV 183
>gi|94469342|gb|ABF18520.1| exosomal 3'-5' exoribonuclease complex subunit Rrp41-like protein
[Aedes aegypti]
Length = 307
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 68/162 (41%), Gaps = 9/162 (5%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
GR N+ R ++ A GS G+TKV+ +V+ P+ K+N+ + +K
Sbjct: 45 GRKDNESRKYFMKLGVVSTAKGSTYLELGNTKVIVSVFDPREIPKQNKFRALGELYCDFK 104
Query: 68 --------PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
+ Q E+ + + LQ + + PN + V+ DDG++L
Sbjct: 105 FSPFACIHRKNPQTDAEERSLAAAMTKALQPVVCRHLFPNFQIDIFANVLEDDGSVLAAV 164
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DA I M + A E LDPT EE+
Sbjct: 165 ITAAGLALSDATISMFDIVTASTVAVIEDK-IYLDPTLAEER 205
>gi|312796906|ref|YP_004029828.1| Polyribonucleotide nucleotidyltransferase / Polynucleotide
adenylyltransferase [Burkholderia rhizoxinica HKI 454]
gi|312168681|emb|CBW75684.1| Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) /
Polynucleotide adenylyltransferase (EC 2.7.7.19)
[Burkholderia rhizoxinica HKI 454]
Length = 768
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 115/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L RAHGSA +++G+T+ L GTK +E A IE
Sbjct: 366 RIDGRDTRTVRPIEIRTGVLPRAHGSALFTRGETQALVVA---TLGTKGDEQIIDA-IEG 421
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR+L T V+
Sbjct: 422 EYRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRSLVPCLPGDDEFGYTIRVVS 480
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 481 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 540
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAA--- 219
+ V + +G + +Q + GI + A++ + H L++ +A
Sbjct: 541 DMDFKVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAREGRLHILDKMTSAVPS 594
Query: 220 -SAKLSDFLRRSLQSKL 235
+ +LS F R + K+
Sbjct: 595 TNMQLSQFAPRMITMKI 611
>gi|374856299|dbj|BAL59153.1| polyribonucleotide nucleotidyltransferase [uncultured candidate
division OP1 bacterium]
Length = 788
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 35/250 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-------ENP 57
R DGR ++LRP++C +L R HGSA +++G+T+ L V + + E
Sbjct: 320 RMDGRRADELRPISCEVGLLPRVHGSALFTRGETQSLGTVTLGTSSLDEQIIDRMLEEGR 379
Query: 58 EKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVV 109
E+ + + P TG++G P + EI + K L+++ V+ +++
Sbjct: 380 ERFMLHYNFPPYSVGETGRMGPPGRR-EIGHGNLAKNALKAVIPSEDEFPYIIRVVSEIL 438
Query: 110 HDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL-DPTKLEEQKMKGF 166
+G+ + A+ AL+DAG+P+K +A+ + S Y IL D E+ F
Sbjct: 439 ESNGSSSMATVCASSLALMDAGVPIKKPVAGIAMGLLTHNSDYMILTDLAGYEDH----F 494
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDF 226
+ F L+ +G + Q + HGI + M + R A ++ D
Sbjct: 495 GDMDFK---LAGTKDGLTGFQMDTKIHGITLQIAKETMM---------QARKARLQILDI 542
Query: 227 LRRSLQSKLP 236
+ R+L + P
Sbjct: 543 MNRTLPAPRP 552
>gi|356570339|ref|XP_003553347.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 916
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 75/145 (51%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR P+ +RP+ C +L RAHGS +++G+T+ LA V G K ++ ++ +
Sbjct: 440 RSDGRTPDGIRPIYSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDSLDGVDEF 499
Query: 59 -KASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P G+IG P + + ++ +R+L+ I + T V +
Sbjct: 500 KRFYLQYSFPPSCVGEVGRIGAPSRREIGHGMLAERSLEPILPSEDDFPYTIRVESTITE 559
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 560 SNGSSSMASVCGGCLALQDAGVPIK 584
>gi|302696003|ref|XP_003037680.1| hypothetical protein SCHCODRAFT_35111 [Schizophyllum commune H4-8]
gi|300111377|gb|EFJ02778.1| hypothetical protein SCHCODRAFT_35111, partial [Schizophyllum
commune H4-8]
Length = 206
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 75/167 (44%), Gaps = 12/167 (7%)
Query: 15 RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG 74
R ++ S L R GSA +S GDT LA+V GP E P +A+ EV +P +
Sbjct: 1 REISVSFDGLARVDGSARFSFGDTTALASVSGPIEVRLAAEQPARATFEVNMRPISNVPA 60
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV-----HDDGALLPCAINAACAALVD 129
K ++ L L P T +++Q + D +LL INA AL++
Sbjct: 61 TEAKSIAASVRAALSPSIFLQQYPRTLIQLMLQALSPARAKSDDSLLAAMINAGSLALLN 120
Query: 130 AG-IPMKHLAVAICCC---SAESGYCILDPTKLEEQKMKG---FAYL 169
AG M+ + A+ S +S ++DP E + +G FA+L
Sbjct: 121 AGSAAMRGVVCAVPVARIPSGDSTILVVDPDTDELSRARGTGCFAFL 167
>gi|357111469|ref|XP_003557535.1| PREDICTED: polyribonucleotide nucleotidyltransferase-like
[Brachypodium distachyon]
Length = 900
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G ++ E
Sbjct: 446 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDTLVDTEES 505
Query: 58 EKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P RTG + E + ++ +R L+ I + T V +
Sbjct: 506 KSFYLQYAFPPSSVGEVGRTGAPNRREIGHGMLAERALEPILPSEGDFPYTIRVESTITE 565
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 566 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 597
>gi|291296202|ref|YP_003507600.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
gi|290471161|gb|ADD28580.1| 3' exoribonuclease [Meiothermus ruber DSM 1279]
Length = 714
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 86/178 (48%), Gaps = 22/178 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------- 54
E RADGR P Q+RP+ ++L + HGSA +S+G+T+VL V GT ++
Sbjct: 322 ENKRADGRTPTQVRPIWIESNVLPKTHGSAIFSRGETQVLGVV---TLGTGRDAQLVDDL 378
Query: 55 --ENPEKASIEVIWKP-RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
E + + + P TG+ + + E + + KR L+++ T V+
Sbjct: 379 GIETEDPFLVHYNFPPYSTGEVRRLRGVSRREVGHGNLAKRGLRAVLPSREEFPYTIRVV 438
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCC-SAESGYCILDPTKLEE 160
V+ +G+ + A C AL+DAG+P+ KH+A VA+ E + D LE+
Sbjct: 439 GDVLESNGSSSMATVCAGCLALLDAGVPLKKHVAGVAMGLVKEGEQAVVLTDILGLED 496
>gi|255082324|ref|XP_002504148.1| predicted protein [Micromonas sp. RCC299]
gi|226519416|gb|ACO65406.1| predicted protein [Micromonas sp. RCC299]
Length = 261
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK----- 59
R DGR P + R + C + L + GSA + G+TKVLAAV+GP + +E E
Sbjct: 10 RLDGRRPKETRRMRCELTALPGSDGSAVFELGNTKVLAAVHGPHECRRPSERLEDRLLVK 69
Query: 60 -----ASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
A+ + R + + E ++R +++ + + V IQV+ DG
Sbjct: 70 CEVSMAAFSTGERRRRTKGDRRTNELSTFVRRCIETCVSAELLARSQLDVSIQVLQADGG 129
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC----ILDPTKLEE 160
+ A+NAA A+VDAGIPM+ + CCSA GY +LD +EE
Sbjct: 130 VRAAAVNAAVLAIVDAGIPMQD---TMACCSA--GYLDDTPLLDLNYMEE 174
>gi|438000156|ref|YP_007183889.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813088|ref|YP_007449541.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429339390|gb|AFZ83812.1| polynucleotide phosphorylase/polyadenylase [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779057|gb|AGF49937.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 701
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 35/247 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ IL RAHGSA +++G+T+ L V GTK++E + S+
Sbjct: 320 RIDGRDTRTVRPIDIKLGILPRAHGSALFTRGETQALVVV---ALGTKQDEQIIE-SLNE 375
Query: 65 IWKPR-----------TGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ R TG+IG+ K EI + KR L S T ++ +
Sbjct: 376 EYRDRFIFHYNMPPFATGEIGRIGVPKRREIGHGCLAKRALLSSLPDPKEFQYTIRLVSE 435
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ A++DAG+P + H+A VA+ +S + IL +E +
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPFRNHVAGVAMGLILEDSKFAILTDILGDEDHLGD 495
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCLERGR----AA 219
+ V + G + +Q + HGI + A+ + D FH L + + ++
Sbjct: 496 MDFKV------AGTVNGITALQMDIKIHGITRDIMKIALDQAKDGRFHILSKMKDSINSS 549
Query: 220 SAKLSDF 226
A+LS F
Sbjct: 550 RAELSSF 556
>gi|289523245|ref|ZP_06440099.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503788|gb|EFD24952.1| polyribonucleotide nucleotidyltransferase [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 741
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 86/170 (50%), Gaps = 25/170 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA----AVYGPKA----GTKKNEN 56
RADGR ++LRP++C S+L RAHGSA +++G+T+ L ++G G K +E
Sbjct: 314 RADGRAMDELRPISCEVSLLPRAHGSAVFTRGETQALVVTTLGMFGEDEQILDGLKLDEP 373
Query: 57 PEKASIEVIWKPRT-GQI------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
P++ + + P + G++ G+ E + + +R ++ + I + II+VV
Sbjct: 374 PKRFMLHYNFPPFSVGEVRPMRGPGRREIGHGALAERAVKPL----IPDESQFPYIIRVV 429
Query: 110 HD----DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCIL 153
D +G+ ++ A +L+DAG+P+ I + G Y IL
Sbjct: 430 SDILESNGSSSMASVCGASMSLMDAGVPIAKSVAGIAMGLIKEGDKYAIL 479
>gi|392575535|gb|EIW68668.1| hypothetical protein TREMEDRAFT_31716 [Tremella mesenterica DSM
1558]
Length = 252
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 82/180 (45%), Gaps = 11/180 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEK---AS 61
R D R P +LR L+ S A GSA+ + G T V ++GP+ ++ + +
Sbjct: 15 RHDARRPYELRSLSLLLSPHPTADGSATVTSGLTSVTVTIFGPREPRIRSSSSHDHVTLT 74
Query: 62 IEVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+EV P + Q G E + LK++ + + + + P + + +QV+ DG
Sbjct: 75 VEVGVPPWSQQSGMKRTRGDRRLVEMGMSLKQSFEPVIMGNLYPRSEILINVQVLSSDGG 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
+LP AINA AL+DAGIP+ +I +LD ++ EE + P S
Sbjct: 135 ILPTAINATTLALIDAGIPLLDYLTSI-SLGLHLTQPLLDLSQPEESDLPSLVVACLPAS 193
>gi|261196958|ref|XP_002624882.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
gi|239596127|gb|EEQ78708.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis SLH14081]
Length = 293
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ + TG G + ++ L+ Q + P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|340788246|ref|YP_004753711.1| polyribonucleotide nucleotidyltransferase [Collimonas fungivorans
Ter331]
gi|340553513|gb|AEK62888.1| Polyribonucleotide nucleotidyltransferase [Collimonas fungivorans
Ter331]
Length = 714
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTKK-----NENPE 58
R DGR+ +RP++ +L R HGSA +++G+T+ L A G +K E +
Sbjct: 325 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVATLGTARDEQKIDALMGEYSD 384
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR LQ+ + + + ++ ++
Sbjct: 385 RFMLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALQAALPAPEDFSYSVRLVSEITE 443
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PM+ H+A +A+ S + +L
Sbjct: 444 SNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKEGSKFAVL 488
>gi|410084138|ref|XP_003959646.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
gi|372466238|emb|CCF60511.1| hypothetical protein KAFR_0K01570 [Kazachstania africana CBS 2517]
Length = 220
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 96/228 (42%), Gaps = 29/228 (12%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L++ GS+ + KV+ +V GP + E P + ++EV +P IG P EI
Sbjct: 8 LNKVDGSSHYENKSVKVICSVTGPIEPKARQELPTQLALEVTVRP---AIGVPTTR-EIT 63
Query: 84 LKRTLQSICILTI----NPNTTTSVIIQVVH--------DDGALLPCAINAACAALVDAG 131
L+ ++ + I P + +Q++ + L+ C IN+ AL+DA
Sbjct: 64 LQDKIRGVISPIICRYKYPRQLCQITLQILESGEEETLFNVKELIGC-INSTVFALIDAA 122
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
I + +AV + G I+DP+ + +K LVF LV G +
Sbjct: 123 IAINSIAVGVSMAVMGDGTFIVDPSNEQLKKSVSTHALVF------------QLVDGSKV 170
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
++ + G F LE G + L+ R+++++K+ DL
Sbjct: 171 VENVLLLDSFGNFDESTLFEVLEYGEKHALSLAKDFRKTIETKIKKDL 218
>gi|239609714|gb|EEQ86701.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ER-3]
gi|327355373|gb|EGE84230.1| exosome complex endonuclease 1/ribosomal RNA processing protein
[Ajellomyces dermatitidis ATCC 18188]
Length = 293
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEK---- 59
R DGR N+LR + S + GS+ S G+T V+ V+GP G + P +
Sbjct: 15 RLDGRRWNELRLMQAQISTNPASSGSSYLSMGNTVVICMVHGPAEGRRSEATGPAREGAV 74
Query: 60 ----------ASIEVIWKPRTGQIGKPEKEYEII--LKRTLQSICILTINPNTTTSVIIQ 107
+ ++ + TG G + ++ L+ Q + P++T S+ +
Sbjct: 75 VSVAVNVAGFSGVDRKKRGATGGGGDRQASTDLATALRDAFQPHLHTHLYPHSTISLHVS 134
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS 145
V+ DG+L INA ALVDAGIPM L +C C+
Sbjct: 135 VLSSDGSLFAACINACTLALVDAGIPMPGL---LCACT 169
>gi|366993555|ref|XP_003676542.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
gi|342302409|emb|CCC70182.1| hypothetical protein NCAS_0E01120 [Naumovozyma castellii CBS 4309]
Length = 228
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 24/229 (10%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEII 83
L + GS+ TK++ +V GP + E P + ++E+I +P G EK E
Sbjct: 10 LTKVDGSSLIESKQTKIICSVTGPIEPKSRQELPTQLALEIIIRPAAGVPNTREKLMEDK 69
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA-------INAACAALVDAGIPMKH 136
L+ + I + P + +Q+++ + L A INA AL+DAGI +
Sbjct: 70 LRAVITPIITRYLYPRQLCQITLQILNSGESELEFAQRELATCINATLIALIDAGIALNS 129
Query: 137 L--AVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPM 191
+ V I S E I+DP+ EE K +++ LV
Sbjct: 130 MCACVPIALTSKEGSDETLLIIDPSD-EELKSSNSVHVL-----------ALELVDQCKT 177
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240
++ ++G + D F+ LE G KL +R ++SK+ D++
Sbjct: 178 VKNVLLLDSNGDFNEKDLFNILESGEVEVLKLGKQIRHIVESKINSDIT 226
>gi|449542303|gb|EMD33282.1| hypothetical protein CERSUDRAFT_76538 [Ceriporiopsis subvermispora
B]
Length = 267
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R+DGR +LR + + A G AS + G T+V +V+GP+ ++++ ++
Sbjct: 14 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 73
Query: 63 -EVIWKP-RTGQIGKPEKEYEIIL------KRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV P TG+ + + IL K T + + T+ P + + V DG
Sbjct: 74 VEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGG 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
LLP IN AL AG+P+ +C SA
Sbjct: 134 LLPACINGTTLALAAAGVPLLDF---VCAVSA 162
>gi|365992048|ref|XP_003672852.1| hypothetical protein NDAI_0L01240 [Naumovozyma dairenensis CBS 421]
gi|410729931|ref|XP_003671144.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
gi|401779963|emb|CCD25901.2| hypothetical protein NDAI_0G01250 [Naumovozyma dairenensis CBS 421]
Length = 225
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 92/220 (41%), Gaps = 19/220 (8%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL + GS+ TK+ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 ILTQVDGSSQIQSQKTKIFCSVTGPIEPKARQELPTQLALEIIVRPSLGVPNTREKLIED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGA-------LLPCAINAACAALVDAGIPMK 135
L+ + + P + +Q++ + + +INA AL+DAGI +
Sbjct: 69 KLRAVFTPLITRYLYPRQLCQITLQILSSGESEQEFTQREVANSINATLLALIDAGIALN 128
Query: 136 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 195
+ AI + I+DP + + K L L E S++V+ +
Sbjct: 129 SMCAAISLAISSDDKLIMDPNDEQLKAAKSVHVLALE------LVESSTVVK------NV 176
Query: 196 ITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ ++G + F LE+G + KL +R ++SK+
Sbjct: 177 LLLDSYGDFNEKQLFDILEQGEISLLKLGKEIRSIVESKI 216
>gi|344229744|gb|EGV61629.1| hypothetical protein CANTEDRAFT_98824 [Candida tenuis ATCC 10573]
Length = 234
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 94/236 (39%), Gaps = 21/236 (8%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ S+L GSA + G TKVL +V GP K E P AS+E+I +P G
Sbjct: 1 MLLRTSVLENVDGSAELTNGRTKVLVSVSGPIEPKIKQELPNLASLEIILRPSIGTANTR 60
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
E L+ L S+ I P V++QV+ + IN + D +
Sbjct: 61 ENLLTDKLRSILSSLIIRHKYPRQLIQVVVQVLSLETD--AVVINNFENTVDDLKVFNIE 118
Query: 137 LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGII 196
I CC + +LD + G + V + + PE S L+ + H ++
Sbjct: 119 FTDIINCCY----FALLDSNIFLYESFIGVSQSVSEDKSIINTPELSDLIHSKS-HHLLV 173
Query: 197 TSV------------THGAMSVDDYFHCLERG-RAASAKLSDFLRRSLQSKLPGDL 239
S+ + G S + F ++ G + A A ++F R+ ++ K+ D
Sbjct: 174 FSIVDSKPSKIVYADSKGEFSKQELFEVMDNGFKIAGANFTEF-RQLVEKKIEDDF 228
>gi|169614405|ref|XP_001800619.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
gi|111061558|gb|EAT82678.1| hypothetical protein SNOG_10343 [Phaeosphaeria nodorum SN15]
Length = 249
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEYEI 82
L+RA GSA+++ ++ AV GP +++E PE+A+IEV +P G +G P E+ E
Sbjct: 11 LNRADGSATYTHNGFSIIGAVNGPIEVLRRDEMPEEATIEVNVRPAVG-VGSPKERHLET 69
Query: 83 ILKRTLQSICILTINPNTTTSVIIQV-----------VHDDGALLPCAINAACAALVDAG 131
+L TL+SI + + P T + +QV + +LP ++ A +L+ A
Sbjct: 70 LLHNTLRSIILTRLIPRTLVQLTLQVRSLPEEDAMTGISSTLTILPHLLHTALLSLLSAS 129
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMK 164
IP+ + S +L PT E + K
Sbjct: 130 IPLSTTLTCVLVALPASSTPLLSPTANELLRAK 162
>gi|405119953|gb|AFR94724.1| exosome component Rrp41 [Cryptococcus neoformans var. grubii H99]
Length = 262
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R D R P +LR + S + GS++ +QG T V +V+GP+ + + ++A +
Sbjct: 15 RQDARRPYELRSTSFQLSTHPSSDGSSTATQGLTTVAVSVFGPREPRNRGLASHDRAVVS 74
Query: 64 VI-----WKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V W R + K +E +++T + + + + P + ++ +QV+ DG
Sbjct: 75 VEVGVVPWAAGAGARRTRGDKRLQEIGAAIRQTFEPVIMTHLYPRSEIAIHVQVLSADGG 134
Query: 115 LLPCAINAACAALVDAGIPM 134
+LP +INA AL+DAGI +
Sbjct: 135 ILPTSINATTLALIDAGISL 154
>gi|374335287|ref|YP_005091974.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
gi|372984974|gb|AEY01224.1| polynucleotide phosphorylase/polyadenylase [Oceanimonas sp. GK1]
Length = 715
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 35/250 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR P+ +R L + +L RAHGSA +++G+T+ L A GT+++ E
Sbjct: 314 RIDGREPDMIRALNVATGLLPRAHGSALFTRGETQALVAA---TLGTERDAQLIDELTGE 370
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
+ + + P TG +G P K EI + KR + ++ T V+ +
Sbjct: 371 RANRFMLHYNFPPYCVGETGMVGSP-KRREIGHGRLAKRGVAAVMPSQEEFPYTVRVVSE 429
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ AL+DAG+P+K +A+ G+ +L +E +
Sbjct: 430 ITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEAEGFVVLSDILGDEDHLGD 489
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCL----ERGRAA 219
+ V S EG + +Q + GI + A+ + + H L E +A
Sbjct: 490 MDFKVAGTS------EGVTALQMDIKIEGITKEIMEVALKQARNARLHILKVMDEALQAP 543
Query: 220 SAKLSDFLRR 229
A +SDF R
Sbjct: 544 RADISDFAPR 553
>gi|313680573|ref|YP_004058312.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
gi|313153288|gb|ADR37139.1| polyribonucleotide nucleotidyltransferase [Oceanithermus profundus
DSM 14977]
Length = 721
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P ++RP+ +L R+HGSA +++G+T+VL V GT ++E
Sbjct: 323 EKKRADGRGPAEIRPIWIEVDVLPRSHGSAIFTRGETQVLGTV---TLGTGRDEQIIDDL 379
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
E + + P R + + E + + KR L+ + T V+
Sbjct: 380 GLDESEDFLVHYNFPPYSTGEVKRLRGVSRREVGHGNLAKRALKPMLPEKDAFPYTIRVV 439
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P+K +A+ E G ++
Sbjct: 440 GDVLESNGSSSMATVCAGCLALMDAGVPIKKPVAGIAMGLVKPEEGEPVV 489
>gi|413958296|ref|ZP_11397535.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
gi|413940876|gb|EKS72836.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. SJ98]
Length = 712
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQSIDA-LEG 375
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 376 EYRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 434
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 435 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 494
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAA--- 219
+ V S +G + +Q + GI + A++ + H L + AA
Sbjct: 495 DMDFKVAGTS------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVPT 548
Query: 220 -SAKLSDFLRRSLQSKL 235
+ +LSD+ R + K+
Sbjct: 549 TNTELSDYAPRMITIKI 565
>gi|407040721|gb|EKE40289.1| 3' exoribonuclease family protein [Entamoeba nuttalli P19]
Length = 223
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME D+ ++R ++ + ++ G + QG + V++ V P+ KK NP++A
Sbjct: 1 MEEDKRTIIETGKIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRA 60
Query: 61 SIEVIWKPRTGQIGKPEK-EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
++V R + E E +K ++ + PN +V Q+V DDG++
Sbjct: 61 IVKVEVYERCSSFDNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVT 120
Query: 120 INAACAALVDAGIPMKHLAVAIC 142
+NAA AL+ +G+ MK + V +C
Sbjct: 121 MNAAMCALLFSGVDMKGIVVGMC 143
>gi|321469683|gb|EFX80662.1| hypothetical protein DAPPUDRAFT_50975 [Daphnia pulex]
Length = 227
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 9/146 (6%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRTGQI--GKPEK 78
I+ +A GSA QG+TK++ VYGP+ KK++ + E + P + Q G +
Sbjct: 5 IISQAKGSAYIEQGNTKLVCGVYGPREVQKKSDFSLNGQLFCEFKFAPFSCQKRRGHQQD 64
Query: 79 EYEIIL----KRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM 134
E++L + L++ L P V + V+ +DG+ L A+ A AL A IPM
Sbjct: 65 NEELVLSGLLREALEAAVCLHKFPKAQVEVNVMVIENDGSPLAAALTCASLALASASIPM 124
Query: 135 KHLAVAICCCSAESGYCILDPTKLEE 160
L + + +LDPTK EE
Sbjct: 125 YDLMIGTSVRQIPKLF-LLDPTKDEE 149
>gi|67470372|ref|XP_651154.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|56467852|gb|EAL45767.1| 3' exoribonuclease family protein [Entamoeba histolytica HM-1:IMSS]
gi|449710454|gb|EMD49524.1| 3' exoribonuclease family protein [Entamoeba histolytica KU27]
Length = 223
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME D+ ++R ++ + ++ G + QG + V++ V P+ KK NP++A
Sbjct: 1 MEEDKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCVISGVNAPRDCPKKEANPDRA 60
Query: 61 SIEVIWKPRTGQIGKPEK-EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
++V R + E E +K ++ + PN +V Q+V DDG++
Sbjct: 61 IVKVEVYERCSSFDNQRRTELEEFIKSGVEWTVLSEQYPNGLINVCNQIVKDDGSIEAVT 120
Query: 120 INAACAALVDAGIPMKHLAVAIC 142
+NAA AL+ +G+ MK + V +C
Sbjct: 121 MNAAMCALLFSGVDMKGIVVGMC 143
>gi|320591734|gb|EFX04173.1| exosome complex exonuclease rrp41 [Grosmannia clavigera kw1407]
Length = 511
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 24/159 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNE-------- 55
R DGR N+LR A GS+ G+TKV+ + GP + G +
Sbjct: 237 RVDGRRWNELRRCHAEVRTQAAADGSSYLEMGNTKVMCVLTGPSEVGQSRARMAGGGGGG 296
Query: 56 ---------------NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNT 100
N A + + R + K +E + RTL ++ + P +
Sbjct: 297 GGGGGGDAKDAEVIVNIVVAGFSSVNRQRRSRQDKRTQEMAATISRTLAAVLHTHLYPRS 356
Query: 101 TTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAV 139
T ++ + V+ DG+LL INAA A VDAGIPM V
Sbjct: 357 TITISLHVLSQDGSLLAALINAATLAAVDAGIPMADYVV 395
>gi|378823303|ref|ZP_09845961.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
gi|378597879|gb|EHY31109.1| polyribonucleotide nucleotidyltransferase [Sutterella parvirubra
YIT 11816]
Length = 707
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP+ S+L R HGSA +++G+T+ L GTK++E
Sbjct: 322 RIDGRDTRTVRPIEIRQSVLPRTHGSALFTRGETQALVTT---TLGTKQDEQIIDGLCEE 378
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
E+ + P TG++G P K EI + KR L+++ T V+ +
Sbjct: 379 THERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALKAVLPTADEFQYTIRVVSE 437
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+ +G+ ++ C +++DAG+P+K + + G
Sbjct: 438 ICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEG 479
>gi|449667396|ref|XP_002164788.2| PREDICTED: exosome complex component MTR3-like [Hydra
magnipapillata]
Length = 212
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI--EVI-----WKPRTGQIGKP 76
+H+A+GS+ DTK++ AVYGP+ K+++ K +I EV W R
Sbjct: 8 IHQANGSSYVETCDTKLICAVYGPRDNPKRHQFSSKGNIFCEVTFAPFSWHERVSNQDSL 67
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKH 136
KEY + + +S L P + I ++ G L A AA AL DAGI M
Sbjct: 68 SKEYSSAIVQAFESAVCLESYPKAQIDIYINILEYSGNCLSYAFIAASIALADAGIEMLD 127
Query: 137 LAVA 140
L +
Sbjct: 128 LVTS 131
>gi|378727125|gb|EHY53584.1| hypothetical protein HMPREF1120_01773 [Exophiala dermatitidis
NIH/UT8656]
Length = 271
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 22 SILH---RAHGSASWS--QGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76
+ILH A GSA+++ G T V Y + + +E PE I+V +P G
Sbjct: 6 AILHTLVSADGSATYTANNGQTIVAGVNYPVEVPYRSDEIPESTFIDVNLRPHNGVGMVK 65
Query: 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQV--VHDDGAL----------------LPC 118
E+ E ++ RTLQ+I + + P T + +QV V D +L L
Sbjct: 66 ERHVEDLIMRTLQTIVLGDLTPRTMLQITLQVVSVESDESLPGGVKGGGQGETYLDMLAS 125
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSV 178
A+NA+ +DAG+ MK +A A + G ++ P ++ +K F + +V
Sbjct: 126 ALNASVLGCLDAGVQMKAVAGAALVGIDQEGRLVVGPGVVQRKKCTSLHVFAFTSDGKTV 185
Query: 179 LPE 181
L E
Sbjct: 186 LME 188
>gi|167396187|ref|XP_001741945.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165893254|gb|EDR21576.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 223
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME D+ ++R ++ + ++ G + QG + +++ V P+ K+ NP++A
Sbjct: 1 MEEDKRTIIESGKIRSISYVRDVSSKSDGCYMFKQGKSCIISGVNAPRDCPKREANPDRA 60
Query: 61 SIEVIWKPRTGQIGKPEK-EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
++V R + E E +K ++ I PN +V Q+V DDG++
Sbjct: 61 VVKVEVYERCSSFDSQRRTELEEFIKSGVEWTVISEQYPNGLINVCNQIVKDDGSIEAVT 120
Query: 120 INAACAALVDAGIPMKHLAVAIC 142
+NAA AL+ +G+ MK + V +C
Sbjct: 121 MNAAMCALLFSGVDMKGIVVGMC 143
>gi|449542307|gb|EMD33286.1| hypothetical protein CERSUDRAFT_56975 [Ceriporiopsis subvermispora
B]
Length = 278
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 69/152 (45%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R+DGR +LR + + A G AS + G T+V +V+GP+ ++++ ++
Sbjct: 24 RSDGRRQYELRDITIDMTPQGSADGCASIAHGLTQVSVSVFGPREAKQRSQTLHDRAVLN 83
Query: 63 -EVIWKP-RTGQIGKPEKEYEIIL------KRTLQSICILTINPNTTTSVIIQVVHDDGA 114
EV P TG+ + + IL K T + + T+ P + + V DG
Sbjct: 84 VEVNVLPFSTGERRRRGRADRRILELAASIKATFEPVVQTTLYPRAQIDIFVSVQQQDGG 143
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
LLP IN AL AG+P+ +C SA
Sbjct: 144 LLPACINGTTLALAAAGVPLLDF---VCAVSA 172
>gi|149245090|ref|XP_001527079.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449473|gb|EDK43729.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 13/168 (7%)
Query: 17 LACSCSILHRAHGSAS--WSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG 74
+ SIL A GSA ++ TKVL +V GP + E P++AS+E+I +P G
Sbjct: 3 FEVNTSILPNADGSAELVYTNNGTKVLCSVSGPIEPKPRQELPQQASLEIIVRPARGLST 62
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQ--VVHDDGAL----LPCAINAACAALV 128
EK E L+ LQ+I I P +++Q VV +D L AIN ALV
Sbjct: 63 TREKLIEDKLRSLLQNIIIRYKYPRQLILIVVQFLVVDEDPVYLTNELSAAINCCFFALV 122
Query: 129 DAGIPM--KHLAVAICCCSAESG---YCILDPTKLEEQKMKGFAYLVF 171
DA + + +VA+C SG I PT E + F + F
Sbjct: 123 DADVALYWSFASVAVCIKGDGSGDGEQLIKSPTGKEIAQSDSFHVVCF 170
>gi|325185608|emb|CCA20090.1| exosome complex exonuclease MTR3like protein putativ [Albugo
laibachii Nc14]
Length = 251
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---AGTKKNENPEKASIEVIWKP 68
+Q+R ++H A GSA TKV+ AVYGP+ G +K + +V + P
Sbjct: 31 DQIRATYMQVGVIHNASGSAYVELQGTKVICAVYGPRNNPRGRRKFHEGGQLICDVKFAP 90
Query: 69 -----RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
RT G+ E ++ I+ + L L P S + ++ DG+ L AI
Sbjct: 91 FAERNRTRNAGQDPDEIDLSQIVTKALLPAIFLDKLPKCVVSCFVVILQSDGSELATAIM 150
Query: 122 AACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPE 181
A AL DA I M+ L A C ++D EE+ +G L F L L +
Sbjct: 151 CASLALADAAIEMRDLVTA-CNAGIVDDKLLVDLCTSEERMSQGNTMLAF----LPSLQK 205
Query: 182 GSSLVQGEPMEHG 194
+ ++Q M H
Sbjct: 206 STFVMQQGTMTHA 218
>gi|419796729|ref|ZP_14322252.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
gi|385699197|gb|EIG29511.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca VK64]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|378730426|gb|EHY56885.1| hypothetical protein HMPREF1120_04949 [Exophiala dermatitidis
NIH/UT8656]
Length = 259
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 17/175 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + S S + GS+ + G+T VL V GP+ G + +N A++E
Sbjct: 15 RQDGRRWNELRRITASISTQPSSDGSSLLTMGNTMVLCTVTGPREGRGQRDN-TNATVET 73
Query: 65 ---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + R + K +E + + QS + P +T S+ + V+ DGAL
Sbjct: 74 EINVAPFAQMDRRRRIKNDKRIQELQSTVSSAFQSHLFTHLYPRSTISISLHVLSLDGAL 133
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESG-------YCILDPTKLEEQKM 163
L +NAA ALVDAGIPM + AI S ILD EEQ++
Sbjct: 134 LAACLNAASLALVDAGIPMPSILAAISSGSVTPADDSSVRPEPILDLNTAEEQEL 188
>gi|298368480|ref|ZP_06979798.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
gi|298282483|gb|EFI23970.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. oral taxon
014 str. F0314]
Length = 705
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAV---ATLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|349610167|ref|ZP_08889525.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
gi|348610468|gb|EGY60158.1| polyribonucleotide nucleotidyltransferase [Neisseria sp. GT4A_CT1]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|261364736|ref|ZP_05977619.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
gi|288567035|gb|EFC88595.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa ATCC
25996]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAV---ATLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|209877665|ref|XP_002140274.1| 3' exoribonuclease protein [Cryptosporidium muris RN66]
gi|209555880|gb|EEA05925.1| 3' exoribonuclease protein, putative [Cryptosporidium muris RN66]
Length = 295
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 27/178 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R D R PN++RP+ + GSA +S G T+VL + GPK TK + N S+ V
Sbjct: 46 RNDSRIPNEVRPINIKTGTVATCDGSAYFSIGRTRVLCTINGPKL-TKSSLNEIGLSVTV 104
Query: 65 IWK--------PRTGQIGKP---------EKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
++ + G I K EK + L++ +QSI + I
Sbjct: 105 DYRLSPFCKKMRQYGNINKSNLNTDYKAEEKYQSLTLEKVIQSIICREKYTRMSIDCYIY 164
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCS--------AESGY-CILDPT 156
++ DDG L AI+ AL DA I + L ++ + ++ Y CILDPT
Sbjct: 165 IIEDDGCALSAAISCLSLALCDAKIEIIGLFSSVTVIAIPNNSEVKSDCKYICILDPT 222
>gi|340361931|ref|ZP_08684338.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
gi|339888028|gb|EGQ77523.1| polyribonucleotide nucleotidyltransferase [Neisseria macacae ATCC
33926]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|89900282|ref|YP_522753.1| polynucleotide phosphorylase/polyadenylase [Rhodoferax
ferrireducens T118]
gi|122479529|sp|Q21YD1.1|PNP_RHOFD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|89345019|gb|ABD69222.1| 3' exoribonuclease [Rhodoferax ferrireducens T118]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ S+L R HGSA +++G+T+ L GT+++ +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVT---TLGTERDAQRIDALSGD 373
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + P TG++G P K EI + KR L ++ T V+ +
Sbjct: 374 YEDRFMLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALMAVLPSKEEFPYTMRVVSE 432
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+ +G+ ++ C +L+DAG+PMK H+A +A+ E+ + +L
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480
>gi|383858041|ref|XP_003704511.1| PREDICTED: exosome complex component MTR3-like [Megachile
rotundata]
Length = 274
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 78/166 (46%), Gaps = 11/166 (6%)
Query: 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE 63
+R+D R N++R + ++ +A GSA GDTKV+ +V+ P+ KN + I
Sbjct: 36 NRSDKRTNNEIRKIFLKTGVVSQAKGSAYIEMGDTKVVCSVFDPREIPNKNGYCVQGEIY 95
Query: 64 VIWK--------PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+K + Q EK+Y +IL+R L+ L PN V V+ + G+
Sbjct: 96 CEFKFASFSCQKRKIHQQNAEEKQYSLILQRALEPAVCLHEFPNFQVDVYAMVLDNAGSA 155
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCIL-DPTKLEE 160
L AI AA AL AG+PM L A G C L DPT EE
Sbjct: 156 LAAAITAASTALASAGVPMFGLVTA--STIGIYGDCFLMDPTDTEE 199
>gi|424902717|ref|ZP_18326233.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
gi|390933092|gb|EIP90492.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 713
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + EG + +Q + GI + A++ + H L + + A A
Sbjct: 497 DMDFKVAGTA------EGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAG 550
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 551 ANTQLSEFAPRMITIKI 567
>gi|451812362|ref|YP_007448816.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778264|gb|AGF49212.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 697
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 112/247 (45%), Gaps = 35/247 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ IL RAHGSA +++G+T+ L V GTK++E + S+
Sbjct: 316 RIDGRDTRTVRPINIKLGILPRAHGSALFTRGETQALVVV---ALGTKQDEQIVE-SLNE 371
Query: 65 IWKPR-----------TGQIGK---PEKE---YEIILKRTLQSICILTINPNTTTSVIIQ 107
++ R TG+IG+ P++ + + KR L S+ + T ++ +
Sbjct: 372 EYRDRFIFHYNMPPFATGEIGRIGVPKRREIGHGYLAKRALSSLLPDSKEFQYTIRLVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ A++DAG+P H+A VA+ + + IL +E +
Sbjct: 432 ITESNGSSSMASVCGGSLAMMDAGVPFSSHVAGVAMGLILEDGKFAILTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCLERGR----AA 219
+ V + G + +Q + HGI + A+ + D H L + + +
Sbjct: 492 MDFKV------AGTVNGITALQMDIKIHGITKDIMKVALDQAKDGRLHILRKMKESIQGS 545
Query: 220 SAKLSDF 226
A+LS F
Sbjct: 546 RAELSSF 552
>gi|255066227|ref|ZP_05318082.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
gi|255049437|gb|EET44901.1| polyribonucleotide nucleotidyltransferase [Neisseria sicca ATCC
29256]
Length = 706
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPSPEEFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ D H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKDARLHILEQMKAAVA 543
>gi|399216737|emb|CCF73424.1| unnamed protein product [Babesia microti strain RI]
Length = 256
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 14/168 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGT--KKNENPEKASI 62
R DGR N+ R + S + GSAS QG T ++ V GP T K+ AS+
Sbjct: 13 RLDGRLCNETRNITVSHGEYATSDGSASIKQGLTHIIVLVKGPSDSTYVKQANQTNFASV 72
Query: 63 EV-----IWKPRTGQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ I + I + K E +++K+ +SI I+ ++ + + ++++
Sbjct: 73 LINCDINISNNLSTDIRRGTKLDIITAEISLLIKKVFKSIIIVPLSKRSQITFSVEILDC 132
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
DG L IN AL+DAG+ +K L + C + + DPT+LE
Sbjct: 133 DGCLKSTIINCCTLALIDAGVAVKSLVFSSSVCYLDK-IVLADPTQLE 179
>gi|393215976|gb|EJD01467.1| hypothetical protein FOMMEDRAFT_69260, partial [Fomitiporia
mediterranea MF3/22]
Length = 191
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 78/193 (40%), Gaps = 40/193 (20%)
Query: 15 RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG 74
R + S L GSA + G TK LA+V GP E KA+ EVI +P G G
Sbjct: 1 RDVVISFDGLSGVDGSARFGFGQTKALASVSGPIEVRLAVEQASKATFEVIARPLAGLPG 60
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQV----------------------VHDD 112
K L+ L ILT NP T ++ Q
Sbjct: 61 TESKALASALRSALLPSMILTNNPRTLVQLVAQSLTPSTTTTSNRSGQLGSVNSKSFRTS 120
Query: 113 GALLPCAINAACAALVDA-GIPMKHLAVAICCCS-----------AESGYCILDPTKLEE 160
AL+ INAA AL++A IP++ + +C S ++S ++DP++ E
Sbjct: 121 PALVAAHINAASLALLNASSIPLRGV---VCAASVGRVRRNPDNDSDSALLVVDPSEDEL 177
Query: 161 QKMKG---FAYLV 170
+ G FA+L+
Sbjct: 178 HSLDGIGAFAFLI 190
>gi|388580057|gb|EIM20375.1| hypothetical protein WALSEDRAFT_69929 [Wallemia sebi CBS 633.66]
Length = 240
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 87/199 (43%), Gaps = 27/199 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR PN++R + C+ R G+ +S GD +VL + GP ++E ++ +I+V
Sbjct: 9 RKDGRTPNEVREINCTRESNARVDGAVRFSFGDVEVLGSATGPVEANLRDEIVDRCTIDV 68
Query: 65 IWKPRTGQIGKPEKEY---------EII----LKRTLQSICILTI-NPNTTTSVIIQVVH 110
++ G KE ++ L R+L + T+ +P T T ++ + V
Sbjct: 69 NFRSINNVTGVQYKELADQIEGALSSVVVGEQLPRSLVRFVVQTLSSPQTPTYMVKEAVS 128
Query: 111 DDGALLP-----CAINAACAALVDAGIPMKHLAVAICCCSAE-SGYCILDPTKLEEQK-- 162
+P AIN A A + A IP+ V +C A +LDP+ EE
Sbjct: 129 APPFRIPISEKAAAINGAIMASLAANIPLS--GVLLCVSLAVIDDVIVLDPSSYEEADAT 186
Query: 163 ---MKGFAYLVFPNSILSV 178
+ GF + N LS+
Sbjct: 187 SVHLLGFTFSSTTNKALSI 205
>gi|83718859|ref|YP_441610.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|167580418|ref|ZP_02373292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis TXDOH]
gi|257139694|ref|ZP_05587956.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis E264]
gi|123726649|sp|Q2SZN9.1|PNP_BURTA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|83652684|gb|ABC36747.1| polyribonucleotide nucleotidyltransferase [Burkholderia
thailandensis E264]
Length = 713
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + EG + +Q + GI + A++ + H L + + A A
Sbjct: 497 DMDFKVAGTA------EGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAG 550
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 551 ANTQLSEFAPRMITIKI 567
>gi|167618527|ref|ZP_02387158.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis Bt4]
Length = 713
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + EG + +Q + GI + A++ + H L + + A A
Sbjct: 497 DMDFKVAGTA------EGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAG 550
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 551 ANTQLSEFAPRMITIKI 567
>gi|302039398|ref|YP_003799720.1| polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
gi|300607462|emb|CBK43795.1| Polyribonucleotide nucleotidyltransferase [Candidatus Nitrospira
defluvii]
Length = 705
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA---- 60
RADGR P +RP+ C +L RAHGSA +++G+T+ LA V GT +E A
Sbjct: 312 RADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVV---TLGTTDDEQRIDALEGE 368
Query: 61 -----SIEVIWKP-RTGQI------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + P G+ G+ E + + +R L+SI T ++ ++
Sbjct: 369 YMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPYTVRIVSEI 428
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCIL 153
+ +G+ + AL+DAG+P+K I + G +L
Sbjct: 429 LESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVL 473
>gi|332526743|ref|ZP_08402845.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
gi|332111146|gb|EGJ11178.1| polynucleotide phosphorylase/polyadenylase [Rubrivivax
benzoatilyticus JA2]
Length = 769
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 19/166 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTKK-----NENPE 58
R DGR+ +RP+ S+L R HGSA +++G+T+ L AA G + ++ E +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVIIQVV 109
+ + P TG++G P K EI R L ++ + PN T V+ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGR-LAKRALVAVLPNKDEFPYTMRVVSEIT 434
Query: 110 HDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C +L+DAG+P+K H+A +A+ + + +L
Sbjct: 435 ESNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVL 480
>gi|167519907|ref|XP_001744293.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777379|gb|EDQ90996.1| predicted protein [Monosiga brevicollis MX1]
Length = 214
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 8/141 (5%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE--VIW 66
R + R LA ++ RA GS G TKV+ A YGP+ + + +E +
Sbjct: 15 REAGEPRSLALQTGVVSRAAGSCFLEMGRTKVMVACYGPEEAARAGTFSDMGVLECHITR 74
Query: 67 KPRTGQ--IGKPEKEYEIILKRTLQSIC----ILTINPNTTTSVIIQVVHDDGALLPCAI 120
P Q E + + L+R L ++ +L P +T ++ ++ DDG +LP +
Sbjct: 75 APFAEQKRATLQETDADRGLRRDLDAMIKPAILLEKYPKSTIALQATILEDDGGVLPALV 134
Query: 121 NAACAALVDAGIPMKHLAVAI 141
A+ ALV+AGI ++ + AI
Sbjct: 135 MASSTALVEAGIELRDIVTAI 155
>gi|19074636|ref|NP_586142.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|19069278|emb|CAD25746.1| BELONGS TO THE RNASE PH (EXOSOME) FAMILY [Encephalitozoon cuniculi
GB-M1]
gi|449330231|gb|AGE96492.1| rnase like protein [Encephalitozoon cuniculi]
Length = 188
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP-EKEY 80
S++ GS+ +S +T V V+GP + E+P++A ++V W+ G+ +K +
Sbjct: 9 SVISHCTGSSRFSYNNTTVFCVVHGPSDAISRQEDPDRAILDVRWRDMVLINGRVYDKYF 68
Query: 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVA 140
++++ L IL ++ + VV + L CA+NAA AL D GIP++ + A
Sbjct: 69 SRVIEKILSKNIILELDACKVIQISFNVVGETRNTLFCAVNAALLALADGGIPLRSMFYA 128
Query: 141 ICCCSAESGYCILD 154
E + D
Sbjct: 129 SSSFMHEEEVVVFD 142
>gi|327399809|ref|YP_004340678.1| polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
gi|327182438|gb|AEA34619.1| Polyribonucleotide nucleotidyltransferase [Hippea maritima DSM
10411]
Length = 703
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAA-VYGPKAGTK-----KNENPE 58
R DGR +++RP+ C +L RAHGSA +++G+T+ L A G + + E E
Sbjct: 315 RIDGRGLDEIRPITCEVGVLPRAHGSAVFTRGETQALVATTLGSREDAQIIDDVSEEGYE 374
Query: 59 KASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + + P R G G+ E + + KR ++ + + V+ ++
Sbjct: 375 RFMLHYNFLPFSTGEVKRLGPPGRREIGHGNLAKRAIEPMLPSEDDFPYAIRVVSDILES 434
Query: 112 DGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ + + +L+DAG+P+K VA+ E GY IL
Sbjct: 435 NGSSSMATVCGSTLSLMDAGVPIKKPVSGVAMGLIKYEGGYAIL 478
>gi|389585705|dbj|GAB68435.1| exosome complex exonuclease rrp41 [Plasmodium cynomolgi strain B]
Length = 231
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 13/158 (8%)
Query: 5 RADGRNPNQLRPLACSC---SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
R DGR ++ R + S +I A G A + G+TK+L+ + GP T+ ++ EK S
Sbjct: 13 RIDGRKEDECRLIKISVGNENIFTDADGFAFYELGNTKLLSYIQGP---TELKKSEEKCS 69
Query: 62 IEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAIN 121
I+ K E ++ ++I +L + N+ ++ + ++ DG + AIN
Sbjct: 70 IKCETKDSVTN------EISAYIRNICENIILLDLYKNSEINIFLYIIERDGGVKHAAIN 123
Query: 122 AACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
AL+DAGI +K+ ++ C ++D +LE
Sbjct: 124 TCILALIDAGIAIKYF-ISACSVLYLQNRILVDGNQLE 160
>gi|254195065|ref|ZP_04901494.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
gi|169651813|gb|EDS84506.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei S13]
Length = 713
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVVGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|224001130|ref|XP_002290237.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973659|gb|EED91989.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]
Length = 145
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEK 59
M +R R P LRPL+ S LHRA GSAS G+T ++ A++GP A E ++
Sbjct: 1 MSYNRPSQRKPTTLRPLSAELSPLHRADGSASLKCGNTHIMVAIHGPIAPRISHREKYDR 60
Query: 60 ASIEVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
A + V + + E++ L S +L P V+IQ+V
Sbjct: 61 AVVNVAFSKGLMMMAGSAAGGGSSGDVVEHDTADGDALSSCIMLEKYPRCVIQVVIQIVQ 120
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
DG++L A N A AL+DAG+ M+
Sbjct: 121 ADGSVLGSATNCAVMALMDAGVAMR 145
>gi|334705597|ref|ZP_08521463.1| polynucleotide phosphorylase/polyadenylase [Aeromonas caviae Ae398]
Length = 691
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 29/247 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTK-VLAAVYGPKAGTKK-----NENPE 58
R DGR+P +R L+ IL RAHGSA +++G+T+ ++ A G + + +
Sbjct: 293 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 352
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG +G P K EI + KR + ++ V+ ++
Sbjct: 353 RFMLHYNFPPYCVGETGMMGSP-KRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITE 411
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ + AL+DAG+P+K +A+ E G+ +L +E + +
Sbjct: 412 SNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDF 471
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCL----ERGRAASAK 222
V S EG + +Q + GI + A+ + H L E +A A+
Sbjct: 472 KVAGTS------EGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQ 525
Query: 223 LSDFLRR 229
+SDF R
Sbjct: 526 ISDFAPR 532
>gi|167836045|ref|ZP_02462928.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
thailandensis MSMB43]
Length = 706
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 315 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 370
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 371 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 429
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 430 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 489
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + EG + +Q + GI + A++ + H L + + A A
Sbjct: 490 DMDFKVAGTA------EGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAG 543
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 544 ANTQLSEFAPRMITIKI 560
>gi|70932569|ref|XP_737786.1| exosome complex exonuclease rrp41 [Plasmodium chabaudi chabaudi]
gi|56513462|emb|CAH83474.1| exosome complex exonuclease rrp41, putative [Plasmodium chabaudi
chabaudi]
Length = 227
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 16/167 (9%)
Query: 5 RADGRNPNQLRPLACSC---SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKAS 61
R DGR ++ R + + +I A G A + G+TK+L+ + GP T+ ++ +K S
Sbjct: 13 RLDGRKCDEYRLIKINMGNQNIFTDADGFAFYEIGNTKILSYIQGP---TELKKSDDKCS 69
Query: 62 I--EVIWKPRTGQIGKPEK-------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
I +V P + +K E ++ ++I +L + N+ ++ + ++ D
Sbjct: 70 IKCDVFLSPFNVYDKRKKKTKDNITNEISAYIRNICENIILLDLYKNSEINIFLYIIERD 129
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
G + AIN AL+DAGI +K+ ++ C I+D +LE
Sbjct: 130 GGIKHAAINTCILALIDAGIAIKYF-ISACSVLYLQNQIIVDGNQLE 175
>gi|70726640|ref|YP_253554.1| polynucleotide phosphorylase [Staphylococcus haemolyticus JCSC1435]
gi|117940134|sp|Q4L5X7.1|PNP_STAHJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|68447364|dbj|BAE04948.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
haemolyticus JCSC1435]
Length = 700
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTTEFPYTVRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|451343585|ref|ZP_21912656.1| polyribonucleotide nucleotidyltransferase [Eggerthia catenaformis
OT 569 = DSM 20559]
gi|449337682|gb|EMD16839.1| polyribonucleotide nucleotidyltransferase [Eggerthia catenaformis
OT 569 = DSM 20559]
Length = 710
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 15/164 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +++RPL +L R HGSA +++G+T+V++AV G + + + E
Sbjct: 319 RPDGRQVDEIRPLDAQVDLLPRVHGSALFTRGETQVMSAVTLGALGEVQKIDGLDDTTEK 378
Query: 65 IWK----------PRTGQIGKP---EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
W TG++G P E + + +R L+ + + T + +V+
Sbjct: 379 RWMHHYNFPPYSVGETGRMGAPGRREIGHGALGERALKQVLPSETDFPYTIRAVAEVLES 438
Query: 112 DGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ +I A+C AL+ AG+P+ VA+ Y IL
Sbjct: 439 NGSSSQASICASCMALMAAGVPISAPVAGVAMGLVKKGDNYTIL 482
>gi|417643550|ref|ZP_12293592.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
VCU121]
gi|445059807|ref|YP_007385211.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
gi|330685657|gb|EGG97298.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
epidermidis VCU121]
gi|443425864|gb|AGC90767.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus warneri
SG1]
Length = 699
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTSDFPYTVRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|33519583|ref|NP_878415.1| polynucleotide phosphorylase [Candidatus Blochmannia floridanus]
gi|81666682|sp|Q7VQM0.1|PNP_BLOFL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|33517246|emb|CAD83629.1| polynucleotide phosphorylase, member of mRNA degradosome
[Candidatus Blochmannia floridanus]
Length = 697
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+P+ +R + S IL R HGSA +++GDT+ L GT+++ +
Sbjct: 317 RFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVT---ATLGTERDAQNLDELTGD 373
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVII 106
++ + + P G +G P + EI R L +L + PN+ T V+
Sbjct: 374 RVDRFLLHYNFPPYCTGEIGIVGAPRRR-EIGHGR-LAKRGMLAVMPNSNEFPYTVRVVS 431
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+V +G+ +I A AL+DAG+P+K VA+ S + IL
Sbjct: 432 EVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIIL 480
>gi|383757408|ref|YP_005436393.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
gi|381378077|dbj|BAL94894.1| polyribonucleotide nucleotidyltransferase Pnp [Rubrivivax
gelatinosus IL144]
Length = 766
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTKK-----NENPE 58
R DGR+ +RP+ S+L R HGSA +++G+T+ L AA G + ++ E +
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRTHGSALFTRGETQALVAATLGTERDAQRIDALAGEFED 376
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT----TTSVIIQVVH 110
+ + P TG++G P K EI R + + + P T V+ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVAVLPPKDEFPYTMRVVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C +L+DAG+P+K H+A +A+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLSLLDAGVPLKAHVAGIAMGLIKEGNRFAVL 480
>gi|401414266|ref|XP_003871631.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487849|emb|CBZ23093.1| putative ribosomal RNA processing protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 324
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 49/210 (23%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR +LR S + GS+ ++QG T V+ +++GP KN+ + ++V
Sbjct: 7 RRDGRTALELRGKEMRLSDMTAFDGSSWYAQGQTAVMVSIHGPT--IAKNDEYDTCIVQV 64
Query: 65 ------IWKPRTGQIGKP---EKEYEII-----------LKRTLQSICILTINPNTTTSV 104
+ P G K E++ E++ L+ TL ++ + P V
Sbjct: 65 RIQHAGVLAPAAGGAEKALYEERKLELLTRTDALALGSLLESTLNAVFVRERFPRCVLVV 124
Query: 105 IIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC-------------------- 144
+ V+ DDG+L A+NA +AL+DAG+P + A+C
Sbjct: 125 DVVVIRDDGSLPAVALNAVMSALLDAGLPCRTTMAAVCVAVVTHDGEADSTSGPAQDRHS 184
Query: 145 ------SAESGY-CILDPTKLEEQKMKGFA 167
SA S Y +LDPT EE G+A
Sbjct: 185 SVDGSSSAGSVYEYLLDPTSAEESLGVGYA 214
>gi|315658436|ref|ZP_07911308.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
gi|315496765|gb|EFU85088.1| polyribonucleotide nucleotidyltransferase [Staphylococcus
lugdunensis M23590]
Length = 698
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGILPRAHGSGLFTRGQTQALSVLTLGALGDYQIIDGLGPEQEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRHIIPDTSKFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|415924064|ref|ZP_11554830.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
gi|407760420|gb|EKF69718.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
frisingense GSF30]
Length = 711
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 114/253 (45%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKK-----NENPE 58
R DGR+ +RP++ +L R HGSA +++G+T+ L A G +K E +
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYTD 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + + ++ ++
Sbjct: 380 RFMLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALIAALPAADEFSYSVRLVSEITE 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 439 SNGSSSMASVCGGCLALMDAGVPMKSHVAGIAMGLIKEGNKFAVLTDILGDEDHLGDMDF 498
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCLERGR----AASAK 222
V + G + +Q + GI + A+ + + H L++ + A A+
Sbjct: 499 KVAGTA------SGITALQMDIKIQGITKEIMQVALEQAKEGRHHILDKMQEAVPAGRAE 552
Query: 223 LSDFLRRSLQSKL 235
LSDF R + K+
Sbjct: 553 LSDFAPRLITIKI 565
>gi|302756855|ref|XP_002961851.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
gi|300170510|gb|EFJ37111.1| hypothetical protein SELMODRAFT_77425 [Selaginella moellendorffii]
Length = 808
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 24/166 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY--GPKA-----GTKKNENP 57
R+DGR + +RP++CSC++L RAHGSA +++G+T+ L AV G G +
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEV 479
Query: 58 EKASIEVIWKPRT--GQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVV 109
++ ++ ++ P + G++G+ P EI +++R+L+ I T V +
Sbjct: 480 KRFYVQYVF-PHSCVGEVGRIGPASRREIGHGRLIERSLEP--IFPSKFPYTVRVESTIT 536
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155
+G+ ++ A AL DAG+P+K C + + ILDP
Sbjct: 537 ESNGSSSMASVCGAYLALCDAGVPVK------CPIAGVAMGLILDP 576
>gi|377821149|ref|YP_004977520.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
gi|357935984|gb|AET89543.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. YI23]
Length = 717
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 325 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQSIDA-LEG 380
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 381 EYRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 439
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 440 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 499
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAA--- 219
+ V + +G + +Q + GI + A++ + H L + AA
Sbjct: 500 DMDFKVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVPH 553
Query: 220 -SAKLSDFLRRSLQSKL 235
+ +LSD+ R + K+
Sbjct: 554 TNTELSDYAPRMITIKI 570
>gi|356560353|ref|XP_003548457.1| PREDICTED: LOW QUALITY PROTEIN: polyribonucleotide
nucleotidyltransferase-like [Glycine max]
Length = 1087
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR P+ +RP+ C +L RAHGS +++G+T+ LA V G K ++ + +
Sbjct: 440 RSDGRTPDGIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDTLDGVDEF 499
Query: 59 -KASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P G+IG P + + ++ +R+L I + T V +
Sbjct: 500 KRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLAPILPSEDDFPYTIRVESTITE 559
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 560 SNGSSSMASVCGGCLALQDAGVPIK 584
>gi|253995588|ref|YP_003047652.1| polynucleotide phosphorylase/polyadenylase [Methylotenera mobilis
JLW8]
gi|253982267|gb|ACT47125.1| 3' exoribonuclease [Methylotenera mobilis JLW8]
Length = 709
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP++ +L R HGSA +++G+T+ L GT ++E
Sbjct: 316 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVVA---TLGTGRDEQIIDALQGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + P TG++G P K EI + KR L + + + T V+ +
Sbjct: 373 YADRFMLHYNMPPYATGETGRVGTP-KRREIGHGRLAKRALVAALPAKEDFDYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+ +G+ ++ C AL+DAG+PMK+ I + G
Sbjct: 432 ITESNGSSSMASVCGGCLALMDAGVPMKNHVAGIAMGLIKEG 473
>gi|399219118|emb|CCF76005.1| unnamed protein product [Babesia microti strain RI]
Length = 269
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 22 SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP------EKASIEVIWKPRTGQIGK 75
+IL+ +G T VL ++ GP +K P + + + +P G I
Sbjct: 37 NILNVPNGIKFSLSDHTSVLCSMLGPYEERRKRIKPTFAVYPNRLRLSIFIRPNCGSIAN 96
Query: 76 PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK 135
+ YE ++ + LQ+I P S +IQ+ +D G+LL +IN++ A + GI ++
Sbjct: 97 KYRNYEFVINKILQTIITTNTMPQCGLSFVIQIFNDSGSLLAHSINSSIVACIIGGISIE 156
Query: 136 HLAVAI 141
+ +A+
Sbjct: 157 FIPIAV 162
>gi|400602922|gb|EJP70520.1| exosome complex subunit Rrp46 [Beauveria bassiana ARSEF 2860]
Length = 273
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 56/234 (23%)
Query: 24 LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG---------QIG 74
L +A GSA++S V AV GP +++ENP +A I+V +P G G
Sbjct: 14 LPKADGSATYSYSGYTVTGAVNGPIEAQRRDENPFEALIDVNVRPAAGVGADEGIWRDTG 73
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD---------------DGALLPCA 119
E+ E IL+R L+ + + P + + +QV + A++P
Sbjct: 74 TAERLLESILQRALRQLIPIRNFPRSMIQITLQVTETPENAYANTKVVQAQLNLAIIPAL 133
Query: 120 INAACAALVDAGIPMKHLAVAICCC--------------SAESGYCILDPTKLEEQKMKG 165
++AA +L+ A IP+K +A A+ S+ S ++DP+ E +
Sbjct: 134 LHAAILSLLTAAIPLKTIATAVTLAVPSDHGDGSSSSSSSSSSSNIVVDPSAREADTARS 193
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAA 219
L G ++ ++ + + GA +VD++ L+ G+ A
Sbjct: 194 LHVL------------------GYTADNELLLAESQGAFNVDEWEAVLQTGQQA 229
>gi|325971218|ref|YP_004247409.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
gi|324026456|gb|ADY13215.1| Polyribonucleotide nucleotidyltransferase [Sphaerochaeta globus
str. Buddy]
Length = 702
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 92/187 (49%), Gaps = 24/187 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE------NPE 58
R DGR+ +Q+RP+ C +L R HGSA +++G+T+ LA GT +E + E
Sbjct: 316 RTDGRSVDQIRPITCEVGLLDRTHGSALFTRGETQALAVT---TLGTASDEQMFDTIDGE 372
Query: 59 KASIEVI----WKPRT----GQI--GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
K+ + + P + G++ G+ E + + +R L++I + T V+ ++
Sbjct: 373 KSFSSFMLHYNFPPYSVGECGRLSTGRREIGHGHLAQRALEAIVPNKESFPYTVRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH----LAVAICCCSAE-SGYCILDPTKLEEQKM 163
+ +G+ ++ C +L+DAG+P+K +A+ + A+ S Y +L EE +
Sbjct: 433 MESNGSSSMASVCGGCLSLMDAGVPIKKPVAGIAMGLITEGADYSKYVVLSDILGEEDHL 492
Query: 164 KGFAYLV 170
+ V
Sbjct: 493 GDMDFKV 499
>gi|358060529|dbj|GAA93934.1| hypothetical protein E5Q_00580 [Mixia osmundae IAM 14324]
Length = 244
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ + +R L S L ++ GSAS+S G VLAAV GP+ + K E ++A++E+
Sbjct: 3 REDGRSLDAIRSLRISLGQLSKSDGSASFSFGQVSVLAAVRGPQEVSLKRELADRAALEI 62
Query: 65 IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
P G G K ++ L S+ +L +P + + +Q
Sbjct: 63 TVLPVRGLPGPAAKAVASMITPVLVSLLLLHAHPRSLLQLTLQ 105
>gi|319760252|ref|YP_004124190.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
gi|318038966|gb|ADV33516.1| polyribonucleotide nucleotidyltransferase [Candidatus Blochmannia
vafer str. BVAF]
Length = 697
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/252 (23%), Positives = 114/252 (45%), Gaps = 42/252 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ + +R + +L R HGSA +++G+T+ L AV GT++N +
Sbjct: 316 RLDGRSQDMIREIDIKIGVLPRTHGSALFTRGETQALVAV---TLGTERNAQNLDELTGD 372
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVII 106
++ + + P G +G P++ EI R L +L + P++ T V+
Sbjct: 373 RVDRFLMHYNFNPYCVGEIGIVGAPKRR-EIGHGR-LAKRGMLAVMPDSNEFPYTIRVVS 430
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ +I A AL+DAG+P+K VA+ E+ + +L +E +
Sbjct: 431 EITESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKEENEFVVLSDIISDEDHIG 490
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224
+ V +G + +Q + +GI + H A LE+ + A K+
Sbjct: 491 DMDFKVAGGK------QGITALQMDIKINGITYEIIHVA---------LEKSKLARLKIL 535
Query: 225 DFLRRSLQSKLP 236
+F+ + + K+P
Sbjct: 536 NFMEQVI--KIP 545
>gi|293510045|ref|ZP_06668753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
gi|291466989|gb|EFF09507.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M809]
Length = 580
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|406949380|gb|EKD79880.1| hypothetical protein ACD_40C00271G0007 [uncultured bacterium]
Length = 717
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKKNENPEKASIE 63
R DGR ++RPL IL R HGSA + +G T+VL+ A G A + E E S++
Sbjct: 310 RVDGRKLTEIRPLEAEIDILPRPHGSAMFKRGQTQVLSIATLGAPALGQILETMESESVK 369
Query: 64 -----VIWKP----RTGQIGKP---EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
P TG+ G P E + + +R + + I+ T V+ +V+
Sbjct: 370 HYIHHYAMPPYASGETGRFGAPGRREIGHGALAERAIMPMLPAEIDFPYTIQVVSEVMSS 429
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICC 143
+G+ ++ A+C AL+ AG+P+K I
Sbjct: 430 NGSTSQASVCASCMALMAAGVPLKKPVAGIAM 461
>gi|297734171|emb|CBI15418.3| unnamed protein product [Vitis vinifera]
Length = 134
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 169 LVFPNSILSVLPEGSSLVQGE----PMEHGIITSVTHGA----------MSVDDYFHCLE 214
+ F N IL+ +S QG H I + ++ + VDDY HCLE
Sbjct: 46 ISFINDILNRAHGSASWSQGRGADGTWNHHICYTWSNVSCCTNQWGMIHFQVDDYLHCLE 105
Query: 215 RGRAASAKLSDFLRRSLQSKLPGDLSKA 242
RG+A SAK+S FLRR+LQ + P D SKA
Sbjct: 106 RGQATSAKMSAFLRRNLQWQGPNDSSKA 133
>gi|207742728|ref|YP_002259120.1| n terminus of a polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum IPO1609]
gi|206594122|emb|CAQ61049.1| probable n terminus of a polyribonucleotide nucleotidyltransferase
protein [Ralstonia solanacearum IPO1609]
Length = 481
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|418649671|ref|ZP_13211699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-91]
gi|418948149|ref|ZP_13500478.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-157]
gi|375030044|gb|EHS23369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-91]
gi|375373429|gb|EHS77102.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-157]
Length = 590
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|299066328|emb|CBJ37512.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CMR15]
Length = 717
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|419784920|ref|ZP_14310678.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
gi|383363521|gb|EID40853.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-M]
Length = 590
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|302798082|ref|XP_002980801.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
gi|300151340|gb|EFJ17986.1| hypothetical protein SELMODRAFT_113341 [Selaginella moellendorffii]
Length = 806
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 24/166 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY--GPKA-----GTKKNENP 57
R+DGR + +RP++CSC++L RAHGSA +++G+T+ L AV G G +
Sbjct: 420 RSDGRGISDVRPISCSCNLLPRAHGSAIFTRGETQALVAVILGGDNMAQRIDGVTDADEV 479
Query: 58 EKASIEVIWKPRT--GQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVV 109
++ ++ ++ P + G++G+ P EI +++R+L+ I T V +
Sbjct: 480 KRFYVQYVF-PHSCVGEVGRIGPASRREIGHGRLIERSLEP--IFPSKFPYTVRVESTIT 536
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155
+G+ ++ A AL DAG+P+K C + + ILDP
Sbjct: 537 ESNGSSSMASVCGAYLALCDAGVPVK------CPIAGVAMGLILDP 576
>gi|332285140|ref|YP_004417051.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
gi|330429093|gb|AEC20427.1| polyribonucleotide nucleotidyltransferase [Pusillimonas sp. T7-7]
Length = 715
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP++ S +L RAHGSA +++G+T+ L GTK++ E
Sbjct: 320 RIDGRDTRTVRPISVSLGVLPRAHGSALFTRGETQALVVA---TLGTKQDEQIIDSIMGE 376
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
+ ++ + + P TG+ G P K EI + KR L S + T ++ +
Sbjct: 377 HRDRFMLHYNFPPFATGETGRFGSP-KRREIGHGRLAKRALVSSLPEAQDFQYTIRIVSE 435
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+ +G+ ++ A++DAG+P+K H+A VA+ + +L
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLIKDGGKFAVL 483
>gi|418951035|ref|ZP_13503164.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-160]
gi|375374854|gb|EHS78473.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-160]
Length = 593
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|418647509|ref|ZP_13209573.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-88]
gi|375029475|gb|EHS22802.1| polyribonucleotide nucleotidyltransferase, partial [Staphylococcus
aureus subsp. aureus IS-88]
Length = 597
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|390597939|gb|EIN07338.1| ribosomal protein S5 domain 2-like protein [Punctularia
strigosozonata HHB-11173 SS5]
Length = 266
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 15/176 (8%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-KASIEVI 65
+GR + +RP+ ++ +A+GSA TK++ AVYGP+ + + + K ++EV
Sbjct: 41 NGRGASDIRPIFLKAGLISQANGSAYIETERTKLVCAVYGPRQSKSTSYSEKGKLNVEVK 100
Query: 66 WKP------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG--ALLP 117
+ P R ++ ++++R+L + L + P +T + I ++ +DG +
Sbjct: 101 FAPFSCTRRRVPNRDAEDRPIAMLIQRSLNAAVRLELFPKSTIDIFITIIENDGIEGCVA 160
Query: 118 CAINAACAALVDAGIPMKHLAVAICCCSAESG----YCILDPTKLEEQKMKGFAYL 169
AA AL A I M L + + C +A + LDPT E + G L
Sbjct: 161 SGTVAASTALAQARIEM--LGMVMSCSAANTADVGKELWLDPTDAESRLASGILVL 214
>gi|332376931|gb|AEE63605.1| unknown [Dendroctonus ponderosae]
Length = 269
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
+EVD DG+ R + ++ +A GSA GDTKV+ +V+ P+ + + K
Sbjct: 38 LEVDACDGQ-----RKIYLQTGVITQAKGSAYIEIGDTKVIVSVFDPREIPNRIDYGLKG 92
Query: 61 SI--EVIWKPRT------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
+ E + P + Q EK+ I+++ L+S L PN V V+ +D
Sbjct: 93 EVYCEFKYAPFSCKKRMMHQQNNEEKQSSDIMRKALESTVCLHELPNFQVDVYAMVLEED 152
Query: 113 GALLPCAINAACAALVDAGIPM 134
G+ L AI A AL AG+PM
Sbjct: 153 GSALSAAIIAGGVALTLAGVPM 174
>gi|314936565|ref|ZP_07843912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
gi|313655184|gb|EFS18929.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
subsp. hominis C80]
Length = 698
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|228475082|ref|ZP_04059810.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
gi|228271067|gb|EEK12455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
SK119]
Length = 698
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|300703637|ref|YP_003745239.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|421891456|ref|ZP_16322257.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
gi|299071300|emb|CBJ42618.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
CFBP2957]
gi|378963205|emb|CCF99005.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
K60-1]
Length = 720
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|239636247|ref|ZP_04677249.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
gi|239597602|gb|EEQ80097.1| polyribonucleotide nucleotidyltransferase [Staphylococcus warneri
L37603]
Length = 598
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 218 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 277
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 278 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTSDFPYTVRIVSEV 334
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 335 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 381
>gi|53725829|ref|YP_103438.1| polynucleotide phosphorylase [Burkholderia mallei ATCC 23344]
gi|67642196|ref|ZP_00440956.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|121601052|ref|YP_992465.1| polynucleotide phosphorylase/polyadenylase [Burkholderia mallei
SAVP1]
gi|124384993|ref|YP_001026732.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10229]
gi|126449416|ref|YP_001079983.1| polynucleotide phosphorylase [Burkholderia mallei NCTC 10247]
gi|167000372|ref|ZP_02266190.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
gi|254175718|ref|ZP_04882378.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|254202114|ref|ZP_04908477.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|254207444|ref|ZP_04913794.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|254359866|ref|ZP_04976136.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|81604650|sp|Q62IN1.1|PNP_BURMA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470944|sp|A3MI97.1|PNP_BURM7 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470945|sp|A2S463.1|PNP_BURM9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470946|sp|A1V2L2.1|PNP_BURMS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52429252|gb|AAU49845.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
23344]
gi|121229862|gb|ABM52380.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
SAVP1]
gi|124293013|gb|ABN02282.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10229]
gi|126242286|gb|ABO05379.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei NCTC
10247]
gi|147746361|gb|EDK53438.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei FMH]
gi|147751338|gb|EDK58405.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei JHU]
gi|148029106|gb|EDK87011.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
2002721280]
gi|160696762|gb|EDP86732.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei ATCC
10399]
gi|238523292|gb|EEP86731.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) [Burkholderia
mallei GB8 horse 4]
gi|243063706|gb|EES45892.1| polyribonucleotide nucleotidyltransferase [Burkholderia mallei
PRL-20]
Length = 713
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|17546786|ref|NP_520188.1| polynucleotide phosphorylase [Ralstonia solanacearum GMI1000]
gi|81504298|sp|Q8XXP6.1|PNP_RALSO RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|17429086|emb|CAD15774.1| probable polyribonucleotide nucleotidyltransferase protein
[Ralstonia solanacearum GMI1000]
Length = 717
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKEDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|402592143|gb|EJW86072.1| 3' exoribonuclease [Wuchereria bancrofti]
Length = 262
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK--- 67
N RP+ +LH G+ G TK++ +V GPK TK + +P + I V K
Sbjct: 32 NTFRPIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSTDVDPTEGQIYVFLKNVS 91
Query: 68 ------PRTGQIGKPEKEYEII---LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
P + KE I ++ L+SI L + V I V++DDG +L
Sbjct: 92 AESNSLPGSNSSSISNKENSRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDGGVLAA 151
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ A+ AL+D+GI + + VA G I+D
Sbjct: 152 SLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVD 187
>gi|418620428|ref|ZP_13183232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
gi|374822558|gb|EHR86578.1| polyribonucleotide nucleotidyltransferase [Staphylococcus hominis
VCU122]
Length = 698
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEIEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALRYIIPDTTEFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|386333034|ref|YP_006029203.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
gi|334195482|gb|AEG68667.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
Po82]
Length = 724
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|83746292|ref|ZP_00943345.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
gi|83727042|gb|EAP74167.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
UW551]
Length = 720
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|50307491|ref|XP_453725.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642859|emb|CAH00821.1| KLLA0D14993p [Kluyveromyces lactis]
Length = 225
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 16/224 (7%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
+L GS+ S TKV+ +V GP + E P + ++E+I KP G EK E
Sbjct: 7 VLGHVDGSSVVSNSGTKVICSVSGPMEPKSRQELPTQLALEIIVKPAEGVQSTREKLMED 66
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL------LPCAINAACAALVDAGIPMKH 136
++ L + ++P + +QV+ + + +NAA ALVDAG+P+
Sbjct: 67 QIRSVLTPVLARYLHPRQFVQICLQVLEAGESRDYTVKEVSVCVNAAVLALVDAGVPLLS 126
Query: 137 LAVAICC-CSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGI 195
+ C + E +++PT E Q K + V+ L G++ G+ +
Sbjct: 127 MCSGTCIGITTEGKQLVVNPT--ESQLAKCESVHVY------CLELGTN-ENGDIDVRNL 177
Query: 196 ITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + G+ F LE G +L LR ++ K+ D
Sbjct: 178 LLLDSLGSFDESQLFKVLETGEKECIRLYTELRSVIKDKVAKDF 221
>gi|53718843|ref|YP_107829.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei K96243]
gi|76810240|ref|YP_332840.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1710b]
gi|126439036|ref|YP_001058334.1| polynucleotide phosphorylase [Burkholderia pseudomallei 668]
gi|126454918|ref|YP_001065573.1| polynucleotide phosphorylase [Burkholderia pseudomallei 1106a]
gi|134283923|ref|ZP_01770619.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|167718839|ref|ZP_02402075.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei DM98]
gi|167737848|ref|ZP_02410622.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 14]
gi|167815032|ref|ZP_02446712.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 91]
gi|167823448|ref|ZP_02454919.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 9]
gi|167845000|ref|ZP_02470508.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei B7210]
gi|167893541|ref|ZP_02480943.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 7894]
gi|167901988|ref|ZP_02489193.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei NCTC 13177]
gi|167910223|ref|ZP_02497314.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 112]
gi|167918256|ref|ZP_02505347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BCC215]
gi|217419798|ref|ZP_03451304.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|226195372|ref|ZP_03790961.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237811578|ref|YP_002896029.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei MSHR346]
gi|242315054|ref|ZP_04814070.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254190554|ref|ZP_04897061.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|254258157|ref|ZP_04949211.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|386862398|ref|YP_006275347.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403518000|ref|YP_006652133.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
gi|418389928|ref|ZP_12967744.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|418538035|ref|ZP_13103663.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|418541532|ref|ZP_13107010.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|418547776|ref|ZP_13112914.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|418553957|ref|ZP_13118757.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|81380050|sp|Q63VN7.1|PNP_BURPS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|123599745|sp|Q3JUB3.1|PNP_BURP1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470947|sp|A3NTA2.1|PNP_BURP0 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187470948|sp|A3N7L3.1|PNP_BURP6 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|52209257|emb|CAH35202.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei K96243]
gi|76579693|gb|ABA49168.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710b]
gi|126218529|gb|ABN82035.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 668]
gi|126228560|gb|ABN92100.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106a]
gi|134244712|gb|EBA44810.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 305]
gi|157938229|gb|EDO93899.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pasteur 52237]
gi|217397102|gb|EEC37118.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 576]
gi|225932574|gb|EEH28572.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei Pakistan 9]
gi|237503430|gb|ACQ95748.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei MSHR346]
gi|242138293|gb|EES24695.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1106b]
gi|254216846|gb|EET06230.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1710a]
gi|385348795|gb|EIF55391.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026a]
gi|385357695|gb|EIF63735.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258a]
gi|385359817|gb|EIF65767.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1258b]
gi|385370904|gb|EIF76126.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354e]
gi|385375882|gb|EIF80619.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 354a]
gi|385659526|gb|AFI66949.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei 1026b]
gi|403073643|gb|AFR15223.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
pseudomallei BPC006]
Length = 713
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|254181191|ref|ZP_04887788.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
gi|184211729|gb|EDU08772.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 1655]
Length = 713
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|367053159|ref|XP_003656958.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
gi|347004223|gb|AEO70622.1| hypothetical protein THITE_2055676 [Thielavia terrestris NRRL 8126]
Length = 264
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 78/183 (42%), Gaps = 25/183 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N+LR + A GS+ G TKV+ V GP ++
Sbjct: 14 RVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGP---SEPGPRRGGIGGGG 70
Query: 65 IWKPRTGQIGKPEKEYEIIL------------KRTLQSICILT-INPNTTTSVIIQVVHD 111
+G G KE E+++ KR + + T + P++ +V + V+
Sbjct: 71 AGGGGSGAGGGQSKEAEVVVSIVIAGFSSVDRKRRGRGDNLHTHLFPHSQITVSLHVLSQ 130
Query: 112 DGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKM 163
DG+LL INAA A VDAGIPM VA C + S Y +LD EEQ++
Sbjct: 131 DGSLLAALINAATLACVDAGIPMTDY-VAACTAGSTSTYAANDEGADPLLDLNHQEEQEL 189
Query: 164 KGF 166
G
Sbjct: 190 PGL 192
>gi|404378814|ref|ZP_10983893.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
gi|294483359|gb|EFG31045.1| polyribonucleotide nucleotidyltransferase [Simonsiella muelleri
ATCC 29453]
Length = 703
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 31/236 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP+ ++L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + N T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPKPEDFNYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A VA+ ++ + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGVAMGLILEDNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAA 219
+ V + EG + +Q + GI + A++ + H L + +AA
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILTQMQAA 541
>gi|78187489|ref|YP_375532.1| polynucleotide phosphorylase/polyadenylase [Chlorobium luteolum DSM
273]
gi|123582727|sp|Q3B2E2.1|PNP_PELLD RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|78167391|gb|ABB24489.1| Polyribonucleotide nucleotidyltransferase [Chlorobium luteolum DSM
273]
Length = 732
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---------NE 55
R DGRN Q+RP+ ++ RAHGSA +++G+T+ L AV GTKK N
Sbjct: 332 RLDGRNLEQVRPITIELGVIPRAHGSALFTRGETQALVAV---TLGTKKDAQSVDTLTNS 388
Query: 56 NPEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P R G G+ E + + +R+++ + T ++ ++
Sbjct: 389 ADKRFMLHYNFPPFSVGEVGRLGSTGRREIGHGNLAERSIKMVAPGEQEFPYTVRIVSEI 448
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCIL 153
+ +G+ ++ AL+D G+P+K I + G Y +L
Sbjct: 449 LESNGSSSMASVCGGTLALMDGGVPLKKPVSGIAMGLIKDGEEYAVL 495
>gi|307730344|ref|YP_003907568.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
gi|307584879|gb|ADN58277.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1003]
Length = 715
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINP-NTTTSVIIQVV 109
+ + P TG++G P K EI + KR L + C+ + + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAA-CLPSADEFGYSIRVVSEIT 439
Query: 110 HDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 440 ESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|121609766|ref|YP_997573.1| polynucleotide phosphorylase/polyadenylase [Verminephrobacter
eiseniae EF01-2]
gi|187611331|sp|A1WLP8.1|PNP_VEREI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|121554406|gb|ABM58555.1| 3' exoribonuclease [Verminephrobacter eiseniae EF01-2]
Length = 757
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 82/164 (50%), Gaps = 15/164 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKK-----NENPE 58
R DGR+ +RP+ +L RAHGSA +++G+T+ LA A G + ++ E +
Sbjct: 317 RIDGRDTRTVRPIEIRAGVLPRAHGSALFTRGETQALAVATLGTERDAQRIDALAGEYDD 376
Query: 59 KASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + P TG++G+ K EI + KR L ++ T V+ ++
Sbjct: 377 RFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALVAVLPTKEEFPYTMRVVSEITES 436
Query: 112 DGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C +L+DAG+PMK H+A +A+ + + +L
Sbjct: 437 NGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKDGNRFAVL 480
>gi|412985413|emb|CCO18859.1| exosome complex exonuclease RRP41 [Bathycoccus prasinos]
Length = 288
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 40/190 (21%)
Query: 5 RADGRNPNQLRPLAC---------SCSILHRAHGSASWSQGDTKVLAAVYGPKAG----T 51
R DGR PN+ R +C SCS GSA ++ G T +AAV+GP + T
Sbjct: 10 RNDGRRPNECRHTSCAFENPISANSCS------GSAEFTFGQTTAVAAVFGPHSSLSTST 63
Query: 52 KKNENPEKASIEV-IWKPRTGQIGKPEK-------------------EYEIILKRTLQSI 91
+ + E+ + V I G P+K E + ++ L+
Sbjct: 64 IDSLSIERLKVTVEITSAAFGMDAIPKKRATNAATLMKSSKSSRKNKELAVKFEQILRCC 123
Query: 92 CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151
P + V ++DDG+ N ALVDAGIPM + VA+C + G
Sbjct: 124 IDAKRYPRSEVYVSAATINDDGSASAALFNGIVLALVDAGIPMLDVFVAVCATRLD-GET 182
Query: 152 ILDPTKLEEQ 161
+LD ++EE+
Sbjct: 183 LLDQNEVEER 192
>gi|254298529|ref|ZP_04965981.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
gi|157808347|gb|EDO85517.1| polyribonucleotide nucleotidyltransferase [Burkholderia
pseudomallei 406e]
Length = 713
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|328853860|gb|EGG02996.1| hypothetical protein MELLADRAFT_109732 [Melampsora larici-populina
98AG31]
Length = 319
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 20/168 (11%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
M R+D R +RPL S S L RA GS +++ GD KVL A+ GP +E P+ A
Sbjct: 1 MLFRRSDARTNLDIRPLTISLSTLSRADGSCNFAFGDLKVLGAMTGPAEVKVWDEKPKHA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV----------- 109
++EV P + G K +K + I L P + + +Q +
Sbjct: 61 TVEVNVLPISSLPGPSSKSSAQSIKSFISPIIYLEQYPRSLIQINLQTLSKPSERWSSTR 120
Query: 110 ---------HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAES 148
++ + +NA+ AL+D G+ M + +A+ +S
Sbjct: 121 KPSRLGFEENESISERAALMNASSIALLDGGVGMSGVGIAVAVAIVKS 168
>gi|148697599|gb|EDL29546.1| exosome component 4, isoform CRA_c [Mus musculus]
Length = 211
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 21/139 (15%)
Query: 33 WSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEK---------EYEII 83
WS G T+ + G++ P++A + + T G+ ++ E +
Sbjct: 16 WSTGRTRRIR-------GSRSRALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQ 68
Query: 84 LKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICC 143
L++T ++ + ++P + + +QV+ DG +NAA A++DAGIPM+ +C
Sbjct: 69 LRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDF---VCA 125
Query: 144 CSAE--SGYCILDPTKLEE 160
CSA G + D + +EE
Sbjct: 126 CSAGFVDGTALADLSHVEE 144
>gi|21282886|ref|NP_645974.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MW2]
gi|49486113|ref|YP_043334.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253731893|ref|ZP_04866058.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|297208080|ref|ZP_06924511.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300912161|ref|ZP_07129604.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|417653250|ref|ZP_12302984.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|417797215|ref|ZP_12444413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|417901705|ref|ZP_12545581.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|418312576|ref|ZP_12924085.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|418317160|ref|ZP_12928584.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|418321844|ref|ZP_12933183.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|418875210|ref|ZP_13429470.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|418934177|ref|ZP_13488000.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|418988096|ref|ZP_13535769.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|448741791|ref|ZP_21723748.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
gi|81649409|sp|Q6G9T9.1|PNP_STAAS RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81762564|sp|Q8NWY9.1|PNP_STAAW RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|21204325|dbj|BAB95022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MW2]
gi|49244556|emb|CAG42985.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSSA476]
gi|253724303|gb|EES93032.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH959]
gi|296887323|gb|EFH26225.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC 51811]
gi|300886407|gb|EFK81609.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH70]
gi|329733632|gb|EGG69960.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21193]
gi|334267263|gb|EGL85727.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21305]
gi|341845544|gb|EGS86746.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21266]
gi|365224459|gb|EHM65724.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VCU006]
gi|365238221|gb|EHM79058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21334]
gi|365239532|gb|EHM80334.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21340]
gi|377719884|gb|EHT44054.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1835]
gi|377770270|gb|EHT94032.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC93]
gi|377770920|gb|EHT94679.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC128]
gi|445547429|gb|ELY15698.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/314250]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|451936600|ref|YP_007460454.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777523|gb|AGF48498.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 701
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ IL RAHGSA +++G+T+ L V GTK++E + S+
Sbjct: 320 RIDGRDTRTVRPIDIKLGILPRAHGSALFTRGETQALVVV---ALGTKQDEQIVE-SLNE 375
Query: 65 IWKPR-----------TGQIGK---PEKE---YEIILKRTLQSICILTINPNTTTSVIIQ 107
++ R TG+IG+ P++ + + KR L S+ T ++ +
Sbjct: 376 EYRDRFIFHYNMPPFATGEIGRIGIPKRREIGHGYLAKRALSSLLPEPKEFQYTIRLVSE 435
Query: 108 VVHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCIL 153
+ +G+ ++ A++DAG+P H+A VA+ +S + IL
Sbjct: 436 ITESNGSSSMASVCGGSLAMMDAGVPFSSHVAGVAMGLILEDSKFAIL 483
>gi|430762367|ref|YP_007218224.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011991|gb|AGA34743.1| Polyribonucleotide nucleotidyltransferase [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 694
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 98/229 (42%), Gaps = 25/229 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L RAHGSA +++G+T+ L A G + + E E
Sbjct: 314 RIDGRDTRTVRPITVQTGVLPRAHGSAVFTRGETQALVVATLGTDRDAQVIDAIEGERRE 373
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG +G P K EI + KR +Q++ + V+ ++
Sbjct: 374 RFMLHYNFPPYCTGETGMVGTP-KRREIGHGRLAKRGVQAVMPKDDSFPYVIRVVSEITE 432
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ AL+DAG+PMK +A+ + +L +E + +
Sbjct: 433 SNGSSSMASVCGTSLALMDAGVPMKAPVAGIAMGLIKEADRFAVLADILGDEDHLGDMDF 492
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCLER 215
V +G + +Q + GI + A+ + D H LER
Sbjct: 493 KVAGTR------DGVTALQMDIKIDGITREIMETALQQARDGRLHILER 535
>gi|319638374|ref|ZP_07993136.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
gi|317400123|gb|EFV80782.1| polyribonucleotide nucleotidyltransferase [Neisseria mucosa C102]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 108/238 (45%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL +L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTGVLPRTHGSALFTRGETQALAV---ATLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALLAVLPEPEDFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILDNNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H LE+ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILEQMKAAVA 543
>gi|385203227|ref|ZP_10030097.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
gi|385183118|gb|EIF32392.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp. Ch1-1]
Length = 716
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|170691678|ref|ZP_02882842.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
gi|170142962|gb|EDT11126.1| Polyribonucleotide nucleotidyltransferase [Burkholderia graminis
C4D1M]
Length = 715
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|49483437|ref|YP_040661.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257425328|ref|ZP_05601753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257427989|ref|ZP_05604387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430622|ref|ZP_05607004.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433382|ref|ZP_05609740.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257436224|ref|ZP_05612271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282903829|ref|ZP_06311717.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|282905592|ref|ZP_06313447.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908567|ref|ZP_06316397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282910846|ref|ZP_06318649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282914051|ref|ZP_06321838.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282916534|ref|ZP_06324292.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282918973|ref|ZP_06326708.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282924096|ref|ZP_06331772.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|283770338|ref|ZP_06343230.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283958017|ref|ZP_06375468.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|293501083|ref|ZP_06666934.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|293526631|ref|ZP_06671316.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|297591281|ref|ZP_06949919.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|384867841|ref|YP_005748037.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|415683864|ref|ZP_11449066.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|417887009|ref|ZP_12531148.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|418566693|ref|ZP_13131066.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|418582108|ref|ZP_13146186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|418597659|ref|ZP_13161181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|418603113|ref|ZP_13166504.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|418891907|ref|ZP_13446022.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|418897812|ref|ZP_13451882.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
gi|418900682|ref|ZP_13454739.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|418908985|ref|ZP_13462988.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|418917069|ref|ZP_13471028.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|418922856|ref|ZP_13476773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|418982187|ref|ZP_13529895.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|418985856|ref|ZP_13533542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|81651256|sp|Q6GHG1.1|PNP_STAAR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|49241566|emb|CAG40252.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA252]
gi|257271785|gb|EEV03923.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 55/2053]
gi|257274830|gb|EEV06317.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278750|gb|EEV09369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281475|gb|EEV11612.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus E1410]
gi|257284506|gb|EEV14626.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M876]
gi|282314068|gb|EFB44460.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C101]
gi|282316783|gb|EFB47157.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C427]
gi|282319021|gb|EFB49373.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus D139]
gi|282322119|gb|EFB52443.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M899]
gi|282325451|gb|EFB55760.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WBG10049]
gi|282327629|gb|EFB57912.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus WW2703/97]
gi|282330884|gb|EFB60398.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282595447|gb|EFC00411.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus C160]
gi|283460485|gb|EFC07575.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus H19]
gi|283790166|gb|EFC28983.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus A017934/97]
gi|290920703|gb|EFD97766.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M1015]
gi|291096088|gb|EFE26349.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 58-424]
gi|297576167|gb|EFH94883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MN8]
gi|312438346|gb|ADQ77417.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TCH60]
gi|315194162|gb|EFU24555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS00]
gi|341858431|gb|EGS99221.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21195]
gi|371969963|gb|EHO87401.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21264]
gi|374393721|gb|EHQ65025.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21342]
gi|374393842|gb|EHQ65145.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21345]
gi|377703150|gb|EHT27466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1214]
gi|377704468|gb|EHT28777.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1242]
gi|377705674|gb|EHT29978.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1500]
gi|377710518|gb|EHT34756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1605]
gi|377731239|gb|EHT55296.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1176]
gi|377736179|gb|EHT60209.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1233]
gi|377750243|gb|EHT74181.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1267]
gi|377754023|gb|EHT77933.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG149]
gi|377760847|gb|EHT84723.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC341D]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|403220758|dbj|BAM38891.1| exosome complex exonuclease rrp41 [Theileria orientalis strain
Shintoku]
Length = 254
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 106/245 (43%), Gaps = 34/245 (13%)
Query: 5 RADGRNPNQLRP--LAC--SCSI-LHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP-- 57
R DGR ++LR L C CS+ G + QG KV V GP+ + ++N
Sbjct: 13 RLDGRRKDELRKTKLYCGSDCSVDFMDYDGVSELIQGLNKVQVLVKGPQEDPRSSKNTYG 72
Query: 58 ---EKASI--EVIW----KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
E+ I E++ + + Q + K+ + +K T Q + I + +V + +
Sbjct: 73 IAEERIDIRCEIVMATEKRVKNSQNERVIKDLSLSVKSTYQEMIISHYYKGCSLNVFVNI 132
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+ DG++ +NA ALVDAG+ +K L + S +S + DP ++E
Sbjct: 133 IEYDGSIKSTVLNAVGVALVDAGVAIKDLVSSSTVISLDS-IILTDPNQME--------- 182
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
L ++L V E S+ II + +++ +E AAS K +D+ R
Sbjct: 183 LKASTAVLCVAVESST--------DKIIYMDYKSKIHLEEINTMVEAAFAASKKFTDYAR 234
Query: 229 RSLQS 233
L++
Sbjct: 235 EVLRN 239
>gi|385324486|ref|YP_005878925.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
gi|261392873|emb|CAX50454.1| polyribonucleotide nucleotidyltransferase (polynucleotide
phosphorylase; PNPase; CAP87K) [Neisseria meningitidis
8013]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 109/238 (45%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + + T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|379795641|ref|YP_005325639.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
gi|356872631|emb|CCE58970.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MSHR1132]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|323525432|ref|YP_004227585.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
gi|323382434|gb|ADX54525.1| polyribonucleotide nucleotidyltransferase [Burkholderia sp.
CCGE1001]
Length = 715
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINP-NTTTSVIIQVV 109
+ + P TG++G P K EI + KR L + C+ + + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAA-CLPSADEFGYSIRVVSEIT 439
Query: 110 HDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 440 ESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|238021429|ref|ZP_04601855.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
gi|237868409|gb|EEP69415.1| hypothetical protein GCWU000324_01329 [Kingella oralis ATCC 51147]
Length = 716
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 109/238 (45%), Gaps = 31/238 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP+ ++L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + N T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPDPEDFNYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKG 165
+ +G+ ++ C +L+ AG+P+K H+A +A+ ++ + +L +E +
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVLTDILGDEDHLGD 491
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L + +AA A
Sbjct: 492 MDFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILSQMQAAVA 543
>gi|91782608|ref|YP_557814.1| polynucleotide phosphorylase [Burkholderia xenovorans LB400]
gi|122970578|sp|Q142H7.1|PNP_BURXL RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|91686562|gb|ABE29762.1| Putative polyribonucleotide nucleotidyltransferase [Burkholderia
xenovorans LB400]
Length = 716
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|15924264|ref|NP_371798.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926857|ref|NP_374390.1| polynucleotide phosphorylase [Staphylococcus aureus subsp. aureus
N315]
gi|57651844|ref|YP_186150.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus COL]
gi|87160870|ref|YP_493864.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_FPR3757]
gi|88194984|ref|YP_499784.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|148267764|ref|YP_001246707.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH9]
gi|150393823|ref|YP_001316498.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JH1]
gi|151221395|ref|YP_001332217.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156979595|ref|YP_001441854.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509440|ref|YP_001575099.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|221142508|ref|ZP_03567001.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6009]
gi|253316410|ref|ZP_04839623.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. CF-Marseille]
gi|253733488|ref|ZP_04867653.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|255006061|ref|ZP_05144662.2| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus Mu50-omega]
gi|257795670|ref|ZP_05644649.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|258416073|ref|ZP_05682341.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|258421656|ref|ZP_05684580.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|258423885|ref|ZP_05686770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|258434812|ref|ZP_05688886.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|258444612|ref|ZP_05692941.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|258447555|ref|ZP_05695699.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|258449397|ref|ZP_05697500.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|258452573|ref|ZP_05700579.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|258454776|ref|ZP_05702740.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|262048163|ref|ZP_06021050.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262051336|ref|ZP_06023559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|269202891|ref|YP_003282160.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282892762|ref|ZP_06300997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|282920518|ref|ZP_06328239.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282927616|ref|ZP_06335232.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|284024267|ref|ZP_06378665.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus 132]
gi|294848270|ref|ZP_06789017.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|295406211|ref|ZP_06816018.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|296274832|ref|ZP_06857339.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus MR1]
gi|297244439|ref|ZP_06928322.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|304381162|ref|ZP_07363815.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|379014465|ref|YP_005290701.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|379020984|ref|YP_005297646.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|384861868|ref|YP_005744588.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|384864501|ref|YP_005749860.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|384869809|ref|YP_005752523.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|385781502|ref|YP_005757673.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|386728960|ref|YP_006195343.1| Polynucleotide adenylyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387150417|ref|YP_005741981.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|387602551|ref|YP_005734072.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|387780382|ref|YP_005755180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|404478615|ref|YP_006710045.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|415686466|ref|ZP_11450555.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|415691124|ref|ZP_11453363.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|416839324|ref|ZP_11902718.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|416844709|ref|ZP_11905395.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|417649451|ref|ZP_12299250.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|417651264|ref|ZP_12301027.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|417802653|ref|ZP_12449710.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|417892222|ref|ZP_12536276.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|417896059|ref|ZP_12540026.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|417898433|ref|ZP_12542353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|417903365|ref|ZP_12547212.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|418283118|ref|ZP_12895875.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|418284628|ref|ZP_12897345.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|418306724|ref|ZP_12918497.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|418309656|ref|ZP_12921207.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|418317764|ref|ZP_12929180.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|418424415|ref|ZP_12997537.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|418427410|ref|ZP_13000422.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|418433216|ref|ZP_13005993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|418436887|ref|ZP_13008689.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|418439759|ref|ZP_13011466.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|418442811|ref|ZP_13014413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|418445870|ref|ZP_13017346.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|418448814|ref|ZP_13020206.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|418451638|ref|ZP_13022972.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|418454694|ref|ZP_13025956.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|418457570|ref|ZP_13028773.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|418569013|ref|ZP_13133353.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|418570763|ref|ZP_13135024.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|418572334|ref|ZP_13136546.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|418579108|ref|ZP_13143203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|418638080|ref|ZP_13200383.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|418642803|ref|ZP_13204989.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|418654655|ref|ZP_13216551.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|418657913|ref|ZP_13219664.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|418661528|ref|ZP_13223113.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|418873518|ref|ZP_13427813.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|418878123|ref|ZP_13432358.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|418880953|ref|ZP_13435172.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|418883881|ref|ZP_13438076.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|418886536|ref|ZP_13440684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|418889067|ref|ZP_13443203.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|418894974|ref|ZP_13449069.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|418903487|ref|ZP_13457528.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|418906210|ref|ZP_13460237.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|418911881|ref|ZP_13465864.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|418914372|ref|ZP_13468344.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|418920353|ref|ZP_13474286.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|418925511|ref|ZP_13479413.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|418928534|ref|ZP_13482420.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|418931345|ref|ZP_13485186.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|418980019|ref|ZP_13527807.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|418991138|ref|ZP_13538799.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|418993895|ref|ZP_13541531.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|419774387|ref|ZP_14300357.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|422742391|ref|ZP_16796397.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|422745494|ref|ZP_16799433.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|424768042|ref|ZP_18195335.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|424785106|ref|ZP_18211909.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|440705985|ref|ZP_20886734.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|440734720|ref|ZP_20914332.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|443636828|ref|ZP_21120921.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|448743346|ref|ZP_21725255.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
gi|81694630|sp|Q5HGF7.1|PNP_STAAC RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81705784|sp|Q7A5X7.1|PNP_STAAN RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|81781693|sp|Q99UJ8.1|PNP_STAAM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940100|sp|Q2FHG4.1|PNP_STAA3 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117940102|sp|Q2FZ20.1|PNP_STAA8 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611294|sp|A7X1Q8.1|PNP_STAA1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187611295|sp|A6QGH3.1|PNP_STAAE RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037316|sp|A6U193.1|PNP_STAA2 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037317|sp|A5ISF8.1|PNP_STAA9 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|189037318|sp|A8Z3V4.1|PNP_STAAT RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|13701074|dbj|BAB42369.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus N315]
gi|14247044|dbj|BAB57436.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu50]
gi|57286030|gb|AAW38124.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus COL]
gi|87126844|gb|ABD21358.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202542|gb|ABD30352.1| polyribonucleotide nucleotidyltransferase, putative [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|147740833|gb|ABQ49131.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH9]
gi|149946275|gb|ABR52211.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus JH1]
gi|150374195|dbj|BAF67455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus str. Newman]
gi|156721730|dbj|BAF78147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus Mu3]
gi|160368249|gb|ABX29220.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus USA300_TCH1516]
gi|253728542|gb|EES97271.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus TCH130]
gi|257789642|gb|EEV27982.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9781]
gi|257839221|gb|EEV63697.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A9763]
gi|257842342|gb|EEV66767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9719]
gi|257845914|gb|EEV69943.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9635]
gi|257849173|gb|EEV73155.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9299]
gi|257850105|gb|EEV74058.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8115]
gi|257853746|gb|EEV76705.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A6300]
gi|257857385|gb|EEV80283.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A6224]
gi|257859791|gb|EEV82633.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A5948]
gi|257863159|gb|EEV85923.1| polyribopolyribonucleotide nucleotidyltransferase [Staphylococcus
aureus A5937]
gi|259160711|gb|EEW45732.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
930918-3]
gi|259163729|gb|EEW48284.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
D30]
gi|262075181|gb|ACY11154.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus ED98]
gi|282590619|gb|EFB95696.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A10102]
gi|282594180|gb|EFB99167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9765]
gi|282764759|gb|EFC04884.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8117]
gi|283470489|emb|CAQ49700.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ST398]
gi|285816956|gb|ADC37443.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
04-02981]
gi|294825070|gb|EFG41492.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A9754]
gi|294968799|gb|EFG44821.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8819]
gi|297178469|gb|EFH37715.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
A8796]
gi|302751097|gb|ADL65274.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304340145|gb|EFM06086.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ATCC BAA-39]
gi|312829668|emb|CBX34510.1| polyribonucleotide nucleotidyltransferase
(Polynucleotidephosphorylase) (PNPase) (Vegetative
protein 15) (VEG15) [Staphylococcus aureus subsp. aureus
ECT-R 2]
gi|315131068|gb|EFT87052.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS03]
gi|315198516|gb|EFU28845.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus CGS01]
gi|320140909|gb|EFW32756.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144375|gb|EFW36141.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323441055|gb|EGA98762.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O11]
gi|323443924|gb|EGB01535.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
O46]
gi|329313944|gb|AEB88357.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus T0131]
gi|329727448|gb|EGG63904.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21172]
gi|329727820|gb|EGG64271.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21189]
gi|334274289|gb|EGL92611.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21318]
gi|341840960|gb|EGS82432.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21235]
gi|341848466|gb|EGS89629.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21259]
gi|341849986|gb|EGS91119.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21269]
gi|341858189|gb|EGS98990.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21201]
gi|344177484|emb|CCC87953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus LGA251]
gi|359830293|gb|AEV78271.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus M013]
gi|364522491|gb|AEW65241.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 11819-97]
gi|365168715|gb|EHM60053.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21202]
gi|365173176|gb|EHM63763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21209]
gi|365237779|gb|EHM78618.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21331]
gi|365245032|gb|EHM85684.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21232]
gi|365246381|gb|EHM86937.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21194]
gi|371978198|gb|EHO95448.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21272]
gi|371982943|gb|EHP00091.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21283]
gi|371984818|gb|EHP01927.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21333]
gi|374363162|gb|AEZ37267.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus VC40]
gi|375014480|gb|EHS08161.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-99]
gi|375015916|gb|EHS09560.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-24]
gi|375023304|gb|EHS16767.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-3]
gi|375038710|gb|EHS31671.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-122]
gi|375039683|gb|EHS32602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-111]
gi|375366055|gb|EHS70067.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-125]
gi|377694245|gb|EHT18610.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1165]
gi|377694780|gb|EHT19144.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1057]
gi|377697135|gb|EHT21490.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1114]
gi|377714627|gb|EHT38826.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1750]
gi|377714968|gb|EHT39166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1769]
gi|377723260|gb|EHT47385.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1096]
gi|377725259|gb|EHT49374.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG547]
gi|377725489|gb|EHT49602.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1150]
gi|377731846|gb|EHT55899.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1213]
gi|377738446|gb|EHT62455.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1612]
gi|377742502|gb|EHT66487.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1770]
gi|377744580|gb|EHT68557.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG2018]
gi|377745945|gb|EHT69920.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG290]
gi|377754577|gb|EHT78486.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIG1524]
gi|377757874|gb|EHT81762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC340D]
gi|377765510|gb|EHT89360.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC345D]
gi|377765712|gb|EHT89561.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CIGC348]
gi|379992182|gb|EIA13639.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus DR10]
gi|383971913|gb|EID87975.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CO-23]
gi|384230253|gb|AFH69500.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 71193]
gi|387718997|gb|EIK06953.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS2]
gi|387720322|gb|EIK08234.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS1]
gi|387725656|gb|EIK13260.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS4]
gi|387727991|gb|EIK15491.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS5]
gi|387730721|gb|EIK18082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS6]
gi|387735798|gb|EIK22908.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS8]
gi|387737476|gb|EIK24542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS7]
gi|387738030|gb|EIK25084.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS9]
gi|387744519|gb|EIK31283.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS10]
gi|387745809|gb|EIK32559.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11a]
gi|387747302|gb|EIK34011.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS11b]
gi|402348679|gb|EJU83658.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus CM05]
gi|404440104|gb|AFR73297.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
08BA02176]
gi|408423463|emb|CCJ10874.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408425453|emb|CCJ12840.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408427441|emb|CCJ14804.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408429428|emb|CCJ26593.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408431416|emb|CCJ18731.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408433410|emb|CCJ20695.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408435401|emb|CCJ22661.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|408437386|emb|CCJ24629.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ST228]
gi|421956516|gb|EKU08845.1| Polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
CN79]
gi|436431748|gb|ELP29101.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus DSM 20231]
gi|436507516|gb|ELP43196.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21282]
gi|443406805|gb|ELS65375.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21236]
gi|445563275|gb|ELY19437.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
KT/Y21]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|15676656|ref|NP_273800.1| polynucleotide phosphorylase [Neisseria meningitidis MC58]
gi|81784821|sp|Q9K062.1|PNP_NEIMB RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|7225988|gb|AAF41171.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
MC58]
Length = 707
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 317 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 373
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 374 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 433
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 434 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 493
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 494 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 544
>gi|421746948|ref|ZP_16184705.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
gi|409774480|gb|EKN56095.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus necator
HPC(L)]
Length = 723
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPAEEEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|385851577|ref|YP_005898092.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
gi|416213951|ref|ZP_11622644.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325144204|gb|EGC66511.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240013]
gi|325206400|gb|ADZ01853.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M04-240196]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|418599643|ref|ZP_13163123.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
gi|374396301|gb|EHQ67542.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21343]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|418559286|ref|ZP_13123832.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
gi|371975577|gb|EHO92871.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21252]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|417891826|ref|ZP_12535883.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
gi|341851112|gb|EGS92041.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21200]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|386830809|ref|YP_006237463.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
gi|417797981|ref|ZP_12445167.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|418656582|ref|ZP_13218387.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|334277103|gb|EGL95342.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21310]
gi|375033233|gb|EHS26437.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-105]
gi|385196201|emb|CCG15822.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus HO 5096 0412]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|384547517|ref|YP_005736770.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|418561375|ref|ZP_13125866.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
gi|298694566|gb|ADI97788.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus ED133]
gi|371977586|gb|EHO94850.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21262]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|387142882|ref|YP_005731275.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|418281437|ref|ZP_12894248.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|418955487|ref|ZP_13507427.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
gi|269940765|emb|CBI49147.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus TW20]
gi|365165259|gb|EHM57087.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21178]
gi|375370970|gb|EHS74762.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-189]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|242025392|ref|XP_002433108.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518649|gb|EEB20370.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 278
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI-- 62
R DGR R + ++ +A GSA +TKVL +V+ P+ + +E I
Sbjct: 42 RKDGRTFEDQRKIYMKTGVVTQAKGSAYLELNNTKVLVSVFEPREIPRLSEFTPNGEIYC 101
Query: 63 EVIWKP-----RTGQIGK-PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL 116
E + P R G I EK+ IILKR+L+ PN V ++ +DG+ L
Sbjct: 102 EFKFAPFYGLERKGHIMDLEEKDLSIILKRSLEPAVCRHEFPNFQVDVYALLLDNDGSCL 161
Query: 117 PCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI- 175
AI AA AL DAGIPM + ++ + +DP EE+ K F F N
Sbjct: 162 SAAITAAGLALADAGIPMYDILTSV-TLGIHNDMIFIDPNFEEEKFCKSF----FKNKTS 216
Query: 176 ------LSVLPEGSSLVQ 187
LS +PE + + +
Sbjct: 217 EIGIISLSYMPEMAQVTE 234
>gi|407712803|ref|YP_006833368.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
gi|407234987|gb|AFT85186.1| polyribonucleotide nucleotidyltransferase [Burkholderia
phenoliruptrix BR3459a]
Length = 713
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L G ++N E E
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQNIDALEGEYRE 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 380 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITE 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 439 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 483
>gi|416197416|ref|ZP_11618626.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|433487991|ref|ZP_20445159.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|433504716|ref|ZP_20461656.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|433506779|ref|ZP_20463691.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|433509087|ref|ZP_20465960.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|433511024|ref|ZP_20467856.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
gi|325140088|gb|EGC62617.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
CU385]
gi|389606162|emb|CCA45075.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
alpha522]
gi|432224457|gb|ELK80222.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M13255]
gi|432242231|gb|ELK97755.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9506]
gi|432242568|gb|ELK98086.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
9757]
gi|432247901|gb|ELL03336.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
12888]
gi|432248515|gb|ELL03940.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
4119]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|241763284|ref|ZP_04761341.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
gi|241367559|gb|EER61846.1| Polyribonucleotide nucleotidyltransferase [Acidovorax delafieldii
2AN]
Length = 747
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ S+L RAHGS+ +++G+T+ L GT+++ E
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSSLFTRGETQALVVT---TLGTERDAQRIDALAGE 373
Query: 56 NPEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + P TG++G+ K EI + KR L ++ T V+ ++
Sbjct: 374 YEDRFMLHYNMPPFATGEVGRMGSTKRREIGHGRLAKRALAAVLPTKEEFPYTMRVVSEI 433
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C +L+DAG+PMK H+A +A+ ++ + +L
Sbjct: 434 TESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEDNRFAVL 480
>gi|145220228|ref|YP_001130937.1| polynucleotide phosphorylase/polyadenylase [Chlorobium
phaeovibrioides DSM 265]
gi|189037312|sp|A4SG26.1|PNP_PROVI RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|145206392|gb|ABP37435.1| Polyribonucleotide nucleotidyltransferase [Chlorobium
phaeovibrioides DSM 265]
Length = 732
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK---------NE 55
R DGR +Q+RP++ ++ RAHGSA +++G+T+ L AV GTKK N
Sbjct: 332 RLDGRTLDQVRPISIDLGVIPRAHGSALFTRGETQALVAV---TLGTKKDAQSVDTLTNS 388
Query: 56 NPEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P R G G+ E + + +R ++ + T ++ ++
Sbjct: 389 ADKRFMLHYNFPPFSVGEVGRLGTTGRREIGHGNLAERAIRMVAPTEQEFPYTIRIVSEI 448
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAESGYCIL 153
+ +G+ ++ AL+D G+P+K +A+ S Y +L
Sbjct: 449 LESNGSSSMASVCGGTLALMDGGVPLKKAVSGIAMGLIKEGSEYAVL 495
>gi|392561650|gb|EIW54831.1| hypothetical protein TRAVEDRAFT_130863 [Trametes versicolor
FP-101664 SS1]
Length = 262
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
+R + + L R GSA + G T L++V GP ENP +A++++ +P
Sbjct: 1 MREVTIAYEGLDRVDGSARFGFGSTLSLSSVSGPIEVRPTLENPSQATLDIQIRPLAAIA 60
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV--------------HDDGALLPCA 119
G K LK L +P T ++ Q + + L
Sbjct: 61 GTDSKALATTLKSIFSPALHLAHHPRTLVQIVGQALCGTQSGSGLGSAGRGWNAGLTASL 120
Query: 120 INAACAALVDAG-IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYL 169
+NA AALV+AG +PM + A+ G +LDP + E ++ G FA+L
Sbjct: 121 VNATTAALVNAGSVPMMGVVCAVAVGRLPDGTLVLDPEETELSRLAGSGCFAFL 174
>gi|418430250|ref|ZP_13003166.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
gi|387718645|gb|EIK06603.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus VRS3a]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|418646120|ref|ZP_13208235.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|421150225|ref|ZP_15609881.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443639762|ref|ZP_21123763.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
gi|375021586|gb|EHS15082.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus IS-55]
gi|394329615|gb|EJE55717.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus str. Newbould 305]
gi|443406413|gb|ELS64993.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus 21196]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|374724589|gb|EHR76669.1| exosome complex component RRP41 [uncultured marine group II
euryarchaeote]
Length = 242
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 107/243 (44%), Gaps = 29/243 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASIE 63
R DGR +++RP+ +L A GSA + G +AAVYGP +A +K + ++A I+
Sbjct: 16 RLDGRKIDEMRPMTIEAGVLPAADGSAMVTHGLNVAVAAVYGPMEAHPRKIQRQDRAVID 75
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + R G + +E + L+S+ ++ P + V I+++ +
Sbjct: 76 VRYNMAPFSTSDRIRPG-YNRRSREISKVTAEALESVVLVERYPRSKIRVEIEILAAEAG 134
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
+ AA AL DAGIPM+ L V + E G +LD K E+ + P
Sbjct: 135 TRCAGLTAAAVALADAGIPMRDLIVGVASGKVE-GTVVLDLDKAEDN----YGQADLPVG 189
Query: 175 ILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
IL P I G +S D+Y +E A+A++ + + +L+ +
Sbjct: 190 IL-------------PNTGEIAFLQMDGDLSPDEYNLAMEYNFKAAAEIHEIMVDALKRR 236
Query: 235 LPG 237
G
Sbjct: 237 YEG 239
>gi|384550031|ref|YP_005739283.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
gi|302332880|gb|ADL23073.1| polynucleotide phosphorylase/polyadenylase [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 698
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>gi|367019368|ref|XP_003658969.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
gi|347006236|gb|AEO53724.1| hypothetical protein MYCTH_2295436 [Myceliophthora thermophila ATCC
42464]
Length = 279
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPE----- 58
R DGR N+LR + A GS+ G TKV+ V GP + G ++
Sbjct: 14 RVDGRRWNELRRVHAQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGGAGG 73
Query: 59 ----------KASIEV---------IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPN 99
KA + V + + R G+ K E + L + + P+
Sbjct: 74 GGAGAGGTGGKAEVVVGIVIAGFSSVDRKRHGRNDKRTLELASTVANALAASLHTHLFPH 133
Query: 100 TTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC-------- 151
+ ++ + V+ DG+LL INAA A VDAGIPM A C + S Y
Sbjct: 134 SQINISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTA-CTAGSTSTYAANDEGADP 192
Query: 152 ILDPTKLEEQKMKGF 166
+LD EEQ++ G
Sbjct: 193 LLDLNHQEEQELPGL 207
>gi|304387933|ref|ZP_07370106.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
gi|304338030|gb|EFM04167.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ATCC 13091]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|451823216|ref|YP_007459490.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776016|gb|AGF47057.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 699
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGRN +RP++ +L RAHGSA +++G+T+ L V GTK +E
Sbjct: 319 RIDGRNTRTVRPISIRLGVLPRAHGSALFTRGETQALVVV---TLGTKHDEQIIDSLSGE 375
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQV 108
+K P G+IG P++ + + +R+L + + + T ++ ++
Sbjct: 376 YRDKFIFHYNMPPFATGEVGRIGVPKRREIGHGYLARRSLTPMLPDSKDFQYTMRLVSEI 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCIL 153
+G+ ++ A++DAG+P+ KH+A VA+ + + IL
Sbjct: 436 TESNGSSSMASVCGGSLAMMDAGVPIGKHVAGVAMGLILEDDKFSIL 482
>gi|406675898|ref|ZP_11083084.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
gi|404626121|gb|EKB22931.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AMC35]
Length = 715
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 29/247 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTK-VLAAVYGPKAGTKK-----NENPE 58
R DGR+P +R L+ IL RAHGSA +++G+T+ ++ A G + + +
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 373
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG +G P K EI + KR + ++ V+ ++
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSP-KRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITE 432
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ + AL+DAG+P+K +A+ E G+ +L +E + +
Sbjct: 433 SNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDF 492
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCL----ERGRAASAK 222
V + EG + +Q + GI + A+ + H L E +A A+
Sbjct: 493 KVAGTT------EGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQ 546
Query: 223 LSDFLRR 229
+SDF R
Sbjct: 547 ISDFAPR 553
>gi|374365461|ref|ZP_09623551.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
gi|373103034|gb|EHP44065.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus basilensis
OR16]
Length = 730
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSAIFTRGETQALVVATLGTKGDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPIKAHVAGVAMGLILEGNKFAVL 480
>gi|385328094|ref|YP_005882397.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|416178664|ref|ZP_11610692.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|416192671|ref|ZP_11616777.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|433492260|ref|ZP_20449354.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|433494337|ref|ZP_20451407.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|433496521|ref|ZP_20453562.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|433498581|ref|ZP_20455590.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|433502732|ref|ZP_20459697.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
gi|187610328|sp|A1KT19.2|PNP_NEIMF RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|308388946|gb|ADO31266.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis alpha710]
gi|325132007|gb|EGC54706.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M6190]
gi|325137838|gb|EGC60413.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
ES14902]
gi|432229049|gb|ELK84742.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM586]
gi|432231011|gb|ELK86681.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM762]
gi|432234415|gb|ELK90035.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7124]
gi|432235221|gb|ELK90837.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M7089]
gi|432240828|gb|ELK96359.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
NM126]
Length = 706
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|171695618|ref|XP_001912733.1| hypothetical protein [Podospora anserina S mat+]
gi|170948051|emb|CAP60215.1| unnamed protein product [Podospora anserina S mat+]
Length = 277
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 79/201 (39%), Gaps = 32/201 (15%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK---------------- 48
R DGR N+LR + A GS+ G TKV+ V GP
Sbjct: 14 RVDGRRWNELRRIHGQIRTQAAADGSSYLEMGHTKVMCVVTGPSEPGPRRGGAAGGASGG 73
Query: 49 ----AGTKKNE---NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTT 101
+K E N A + + R G+ K E + L TL + + P++
Sbjct: 74 AGSGGQSKDAEVVVNIVIAGFSSVDRKRRGRGDKRTLEMQFTLSNTLAATLHTHLFPHSQ 133
Query: 102 TSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC--------IL 153
++ + V+ DG+LL INAA A VDAGIPM A C + S Y +L
Sbjct: 134 INISLHVLSQDGSLLAALINAATLACVDAGIPMTDYVTA-CTAGSTSTYAANDEGADPLL 192
Query: 154 DPTKLEEQKMKGFAYLVFPNS 174
D EEQ++ G S
Sbjct: 193 DLNHQEEQELPGLTVATLGES 213
>gi|350545157|ref|ZP_08914662.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
gi|350527048|emb|CCD38988.1| Polyribonucleotide nucleotidyltransferase [Candidatus Burkholderia
kirkii UZHbot1]
Length = 733
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 114/258 (44%), Gaps = 38/258 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 340 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQSIDA-LEG 395
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 396 EYRERFMLHYNMPSFATGETGRVGSP-KRREIGHGRLAKRALVACLPSAEEFGYSIRVVS 454
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 455 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 514
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAAS-- 220
+ V + +G + +Q + GI + A++ + H L + AA+
Sbjct: 515 DMDFKVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAAVP 568
Query: 221 ---AKLSDFLRRSLQSKL 235
+LSD+ R + K+
Sbjct: 569 HTNTELSDYAPRMITIKI 586
>gi|330830884|ref|YP_004393836.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|423202713|ref|ZP_17189292.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|423208471|ref|ZP_17195025.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
gi|328806020|gb|AEB51219.1| Polyribonucleotide nucleotidyltransferase [Aeromonas veronii B565]
gi|404614909|gb|EKB11888.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii AER39]
gi|404618316|gb|EKB15236.1| polyribonucleotide nucleotidyltransferase [Aeromonas veronii
AER397]
Length = 715
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 108/247 (43%), Gaps = 29/247 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTK-VLAAVYGPKAGTKK-----NENPE 58
R DGR+P +R L+ IL RAHGSA +++G+T+ ++ A G + + +
Sbjct: 314 RIDGRDPEMIRALSVGTGILPRAHGSALFTRGETQAIVVATLGTERDAQNIDELTGNRAD 373
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG +G P K EI + KR + ++ V+ ++
Sbjct: 374 RFMLHYNFPPYCVGETGMMGSP-KRREIGHGRLAKRGVAAVMPSAAEFPYVVRVVSEITE 432
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ + AL+DAG+P+K +A+ E G+ +L +E + +
Sbjct: 433 SNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEEEGFVVLSDILGDEDHLGDMDF 492
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCL----ERGRAASAK 222
V + EG + +Q + GI + A+ + H L E +A A+
Sbjct: 493 KVAGTT------EGVTALQMDIKIEGITKEIMEIALKQARGARLHILKVMDEAIQAPRAQ 546
Query: 223 LSDFLRR 229
+SDF R
Sbjct: 547 ISDFAPR 553
>gi|238028147|ref|YP_002912378.1| polynucleotide phosphorylase/polyadenylase [Burkholderia glumae
BGR1]
gi|237877341|gb|ACR29674.1| Polyribonucleotide nucleotidyltransferase [Burkholderia glumae
BGR1]
Length = 709
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 25/169 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
++ +G+ ++ C AL+DAG+PMK H+A +A+ ++ + +L
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEDNKFAVL 485
>gi|433468915|ref|ZP_20426344.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
gi|432205308|gb|ELK61338.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
98080]
Length = 706
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|385854904|ref|YP_005901417.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
gi|325203845|gb|ADY99298.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
M01-240355]
Length = 706
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|194289155|ref|YP_002005062.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
gi|226702643|sp|B3R3W3.1|PNP_CUPTR RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|193222990|emb|CAQ68995.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus taiwanensis
LMG 19424]
Length = 723
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKEDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|319941417|ref|ZP_08015745.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
gi|319805037|gb|EFW01867.1| polyribonucleotide nucleotidyltransferase [Sutterella
wadsworthensis 3_1_45B]
Length = 707
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 107/256 (41%), Gaps = 35/256 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK++ E
Sbjct: 322 RIDGRDTRTVRPIEIRQGVLPRTHGSALFTRGETQALVTT---TLGTKQDEQIIDGLCEE 378
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + P TG++G P K EI + KR L+++ T V+ +
Sbjct: 379 QHDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALKAVLPSPEEFQYTLRVVSE 437
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCILDPTKLEEQKMKG 165
+ +G+ ++ C +++DAG+P+K + + G + +L +E +
Sbjct: 438 ICESNGSSSMASVCGGCLSMLDAGVPLKDYVAGVAMGLIKEGNRFAVLTDILGDEDHLGD 497
Query: 166 FAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLER----GRAA 219
+ V G + +Q + GI + A++ D H L R
Sbjct: 498 MDFKVAGTE------NGVTALQMDIKIEGITPEIMQAALAQAHDGRQHILSRMHEMAGGG 551
Query: 220 SAKLSDFLRRSLQSKL 235
+ +LSDF R + K+
Sbjct: 552 AKELSDFAPRMISFKI 567
>gi|221211731|ref|ZP_03584710.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
gi|221169092|gb|EEE01560.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD1]
Length = 713
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 380 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITE 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 439 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 498
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCL----ERGRAASAK 222
V + +G + +Q + GI + A++ + H L E A+ +
Sbjct: 499 KVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQ 552
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 553 LSEFAPRMITIKI 565
>gi|295427761|ref|ZP_06820393.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|295128119|gb|EFG57753.1| polyribonucleotide nucleotidyltransferase [Staphylococcus aureus
subsp. aureus EMRSA16]
Length = 638
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL IL R HGS +++G T+ L+ + GP+
Sbjct: 259 RPDGRKPDEIRPLDSEVGILPRTHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEEEK 318
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 319 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTADFPYTIRIVSEV 375
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 376 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 422
>gi|421558651|ref|ZP_16004529.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
gi|402337394|gb|EJU72642.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
92045]
Length = 706
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|221199652|ref|ZP_03572696.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
gi|221205448|ref|ZP_03578463.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221174286|gb|EEE06718.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2]
gi|221180937|gb|EEE13340.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CGD2M]
Length = 715
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCL----ERGRAASAK 222
V + +G + +Q + GI + A++ + H L E A+ +
Sbjct: 501 KVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|121634554|ref|YP_974799.1| polynucleotide phosphorylase/polyadenylase [Neisseria meningitidis
FAM18]
gi|120866260|emb|CAM10001.1| putative polyribonucleotide nucleotidyltransferase [Neisseria
meningitidis FAM18]
Length = 711
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 321 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 377
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 378 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 437
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 438 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 497
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 498 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 548
>gi|374851060|dbj|BAL54031.1| polynucleotide phosphorylase/polyadenylase [uncultured
planctomycete]
Length = 768
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 80/164 (48%), Gaps = 15/164 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTKK-----NENPE 58
R DGR P LRP++C +L R HGSA +++G+T+ L G + +K E+ +
Sbjct: 331 RLDGRGPKDLRPISCEVGVLPRTHGSALFTRGETQALVTTTLGTVSDEQKVEGLAEEHTK 390
Query: 59 KASIEVIWKPRT-GQI------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
K ++ + P + G++ G+ E + + +R+L+++ T V+ +++
Sbjct: 391 KFMLDYNFPPFSVGEVRPIRGPGRREVGHGALAERSLKAVMPTPEEFPYTIRVVSEILES 450
Query: 112 DGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ + A +L+DAG+P+ ++I Y +L
Sbjct: 451 NGSSSMATVCGATLSLMDAGVPIYQPVAGISIGLVKENDRYVLL 494
>gi|339325133|ref|YP_004684826.1| polyribonucleotide nucleotidyltransferase [Cupriavidus necator N-1]
gi|338165290|gb|AEI76345.1| polyribonucleotide nucleotidyltransferase Pnp [Cupriavidus necator
N-1]
Length = 723
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|339248287|ref|XP_003375777.1| DEAD-box helicase 1 [Trichinella spiralis]
gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
Length = 714
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 7/151 (4%)
Query: 17 LACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV-IWKPRTGQIGK 75
C+ + GS S+ T +L +V+GP + P+ A ++V + +IG
Sbjct: 500 FRCTVRYVEDCTGSCLVSKRGTTLLISVHGPTDVKASKQLPDSAVVQVHLTTVSKDEIGG 559
Query: 76 PEK----EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
+ + L+ QSI ++ + P ++++Q + DG + A+N C AL+++
Sbjct: 560 RSSIDSGQMTLFLQNICQSIILVKLLPKRLITIVVQELESDGCFMEVAVNGLCIALLESA 619
Query: 132 IPMKHLAVA--ICCCSAESGYCILDPTKLEE 160
+PM + A + SG +L+PT EE
Sbjct: 620 LPMNDMFAASTLAYYGGASGQILLNPTAKEE 650
>gi|161524200|ref|YP_001579212.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|189351043|ref|YP_001946671.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
multivorans ATCC 17616]
gi|421469587|ref|ZP_15918034.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
gi|421478340|ref|ZP_15926103.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|226702628|sp|A9AJP0.1|PNP_BURM1 RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|160341629|gb|ABX14715.1| Polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|189335065|dbj|BAG44135.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC 17616]
gi|400224933|gb|EJO55128.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
CF2]
gi|400229438|gb|EJO59286.1| polyribonucleotide nucleotidyltransferase [Burkholderia multivorans
ATCC BAA-247]
Length = 715
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSAEEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCL----ERGRAASAK 222
V + +G + +Q + GI + A++ + H L E A+ +
Sbjct: 501 KVAGTA------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|416163009|ref|ZP_11606888.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|433473162|ref|ZP_20430526.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|433481711|ref|ZP_20438976.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|433483697|ref|ZP_20440925.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|433485896|ref|ZP_20443097.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
gi|325127858|gb|EGC50764.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
N1568]
gi|432210763|gb|ELK66719.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97021]
gi|432217542|gb|ELK73410.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2006087]
gi|432221400|gb|ELK77210.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
2002038]
gi|432222942|gb|ELK78724.1| polyribonucleotide nucleotidyltransferase [Neisseria meningitidis
97014]
Length = 706
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 29/237 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RPL S+L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPLNIQTSVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP-RTGQIGK--PEKEYEI----ILKRTLQSICILTINPNTTTSVIIQV 108
++ + + P TG++G+ K EI + KR L ++ + + T V+ ++
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRMGAPKRREIGHGRLAKRALLAVLPKPEDFSYTMRVVSEI 432
Query: 109 VHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGF 166
+G+ ++ C +L+ AG+P+K H+A +A+ + + +L +E +
Sbjct: 433 TESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDM 492
Query: 167 AYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA 221
+ V + EG + +Q + GI + A++ + H L++ +AA A
Sbjct: 493 DFKVAGTT------EGVTALQMDIKIQGITKEIMQIALAQAKEARLHILDQMKAAVA 543
>gi|300691020|ref|YP_003752015.1| polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|299078080|emb|CBJ50723.1| Polyribonucleotide nucleotidyltransferase [Ralstonia solanacearum
PSI07]
gi|344169630|emb|CCA81989.1| polyribonucleotide nucleotidyltransferase [blood disease bacterium
R229]
Length = 722
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKEDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|113867066|ref|YP_725555.1| polynucleotide phosphorylase/polyadenylase [Ralstonia eutropha H16]
gi|122947022|sp|Q0KCT4.1|PNP_RALEH RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|113525842|emb|CAJ92187.1| polyribonucleotide nucleotidyltransferase [Ralstonia eutropha H16]
Length = 723
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|73540660|ref|YP_295180.1| polynucleotide phosphorylase [Ralstonia eutropha JMP134]
gi|123625489|sp|Q473U7.1|PNP_RALEJ RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|72118073|gb|AAZ60336.1| 3' exoribonuclease:RNA binding S1:KH, type 1 [Ralstonia eutropha
JMP134]
Length = 728
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|430805942|ref|ZP_19433057.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
gi|429501770|gb|ELA00097.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus sp. HMR-1]
Length = 723
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 374
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 478
>gi|167562173|ref|ZP_02355089.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis EO147]
gi|167569418|ref|ZP_02362292.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
oklahomensis C6786]
Length = 714
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 116/254 (45%), Gaps = 31/254 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINP-NTTTSVIIQVV 109
+ + P TG++G P K EI + KR L + C+ + + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVA-CLPSADEFGYSIRVVSEIT 439
Query: 110 HDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFA 167
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 440 ESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMD 499
Query: 168 YLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCL----ERGRAASA 221
+ V + +G + +Q + GI + A++ + H L E A+
Sbjct: 500 FKVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEAVAGANT 553
Query: 222 KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 554 QLSEFAPRMITIKI 567
>gi|94309868|ref|YP_583078.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
gi|187611276|sp|Q1LPW7.1|PNP_RALME RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|93353720|gb|ABF07809.1| polynucleotide phosphorylase/polyadenylase [Cupriavidus
metallidurans CH34]
Length = 725
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPK---------AGTKKN 54
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K AG ++
Sbjct: 317 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALAGEYRD 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
++ TG++G P K EI + KR L + T ++ ++
Sbjct: 377 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 435
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 436 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILEGNKFAVL 480
>gi|117926996|ref|YP_867613.1| polynucleotide phosphorylase/polyadenylase [Magnetococcus marinus
MC-1]
gi|187610282|sp|A0LE14.1|PNP_MAGSM RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|117610752|gb|ABK46207.1| Polyribonucleotide nucleotidyltransferase [Magnetococcus marinus
MC-1]
Length = 701
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR +RP+AC SIL R HG+A +++G+T+ +A V GT ++E
Sbjct: 318 RVDGRGLTDIRPIACEVSILPRVHGTALFTRGETQAIATV---TLGTSRDEQIVETLSGE 374
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVII 106
++ + + P TG++G P + I L + + I P+ T +
Sbjct: 375 YRDRFYLNYTFPPYCVGETGRMGAPGRRE--IGHGKLATRALTAIVPSAEVFPYTLRITS 432
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCILDPTKLEEQKMK 164
++ +G+ + A A+ DAG+P+K I + G Y +L +E +
Sbjct: 433 EITESNGSSSMATVCGAVLAMQDAGVPIKAPVAGIAMGLVKEGDAYAVLSDILGDEDHLG 492
Query: 165 GFAYLVFPNS 174
+ V N+
Sbjct: 493 DMDFKVAGNA 502
>gi|295698477|ref|YP_003603132.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
gi|291157180|gb|ADD79625.1| polyribonucleotide nucleotidyltransferase [Candidatus Riesia
pediculicola USDA]
Length = 705
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 98/225 (43%), Gaps = 41/225 (18%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR N++R + C +L R HGS+ +++G+T+ L V T NE + E+
Sbjct: 320 RIDGRKLNEIRKIDCRVGVLSRTHGSSLFTRGETQTLVIV------TLGNERDAQIRDEI 373
Query: 65 IWKP----------------RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSV 104
+ + G +G P K EI ++KR + ++ N + T V
Sbjct: 374 VGEKLDHFILHYNFLPYSVGEIGLVGVP-KRREIGHGNLVKRGMIAVMPNFSNFSYTIRV 432
Query: 105 IIQVVHDDGALLPCAINAACA---ALVDAGIPMKH--LAVAICCCSAESGYCILDPTKLE 159
+ +V+ +G+ ++ +AC A++DAGIP+K ++I + + IL +
Sbjct: 433 VSEVIESNGS---SSMASACGTSLAMMDAGIPIKSAIAGISIGLIKEKENFVILSDILGD 489
Query: 160 EQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM 204
E + V N EG S +Q + +GI + A+
Sbjct: 490 EDHFGDMDFKVMGN------EEGISALQMDLKINGIEDEILRFAL 528
>gi|14250906|emb|CAC39258.1| Rrp41p homologue [Trypanosoma brucei]
Length = 252
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPEKAS 61
R DGR N+ R LA + G + G + V A VYGP+ + + + N +
Sbjct: 14 RLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTIT 73
Query: 62 IEVIWKPRTGQIGKPEKEY----EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGA 114
+V+ G+ + ++ Y E I L +S+ +L+ PN+ + I+V+ DG+
Sbjct: 74 CDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHL 137
INAAC AL+DA I M+ +
Sbjct: 134 DKAACINAACLALIDASIAMRDV 156
>gi|421897867|ref|ZP_16328234.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
gi|206589073|emb|CAQ36035.1| polyribonucleotide nucleotidyltransferase protein [Ralstonia
solanacearum MolK2]
Length = 752
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 16/149 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALQGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKDDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA 138
+G+ ++ C AL+DAG+P+K H+A
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVA 462
>gi|451811633|ref|YP_007448088.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776791|gb|AGF47790.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 700
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGRN +RP+ +L RAHGSA +++G+T+ L V GTK++E
Sbjct: 319 RIDGRNTRTVRPIDIRLGVLPRAHGSALFTRGETQALVIV---TLGTKQDEQIIDSLLGE 375
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQV 108
+K P G+IG P++ + + +R L + + + TT ++ ++
Sbjct: 376 YRDKFIFHYNMPPFATGEIGRIGIPKRREVGHGYLARRALTPMLPDPKDFHYTTRLVSEI 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCIL 153
+G+ ++ A++DAG+P+ KH+A VA+ + + IL
Sbjct: 436 TESNGSSSMASVCGGSLAMMDAGVPISKHVAGVAMGLILEDDKFAIL 482
>gi|74316711|ref|YP_314451.1| polynucleotide phosphorylase [Thiobacillus denitrificans ATCC
25259]
gi|123759157|sp|Q3SKX5.1|PNP_THIDA RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|74056206|gb|AAZ96646.1| polyribonucleotide nucleotidyltransferase protein [Thiobacillus
denitrificans ATCC 25259]
Length = 706
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L RAHGSA +++G+T+ L GT ++E A +E
Sbjct: 315 RIDGRDTRTVRPITIRTGVLPRAHGSALFTRGETQALVVT---TLGTGRDEQTIDA-LEG 370
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
+ R TG++G P K EI + KR L ++ T V+
Sbjct: 371 SYSDRFMLHYNMPPYATGETGRVGSP-KRREIGHGRLAKRALLAVLPSKEEFGYTMRVVS 429
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
++ +G+ ++ C +L+DAG P+K H+A +A+ + + +L
Sbjct: 430 EITESNGSSSMASVCGGCLSLMDAGAPLKAHVAGIAMGLIKEGNRFAVL 478
>gi|296085901|emb|CBI31225.3| unnamed protein product [Vitis vinifera]
Length = 942
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNEN------P 57
R+DGR P+ +R + C +L RAHGSA +++G+T+ LA V G + ++ +N
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P G++G P + + ++ +R L+ I + T V +
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVESTITE 556
Query: 111 DDGALLPCAINAACAALVDAGIPMKH----LAVAICCCSAESG 149
+G+ ++ C AL DAG+P+K+ +A+ + + E G
Sbjct: 557 SNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFG 599
>gi|302411144|ref|XP_003003405.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261357310|gb|EEY19738.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 249
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 15 RPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIG 74
+P S LHR GSA+++ D ++A+V GP +++E+P +A I+V +P G G
Sbjct: 4 QPAEGRLSHLHRTDGSATFAHNDHCIMASVNGPIEAQRRDEDPFEAVIDVTVRPAAGVGG 63
Query: 75 KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVH 110
E++ E +L+ +LQ + P + + +QV
Sbjct: 64 TRERQLESLLQASLQQLICTKRFPRSVFQITLQVTQ 99
>gi|414160588|ref|ZP_11416854.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410878108|gb|EKS25997.1| polyribonucleotide nucleotidyltransferase [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 701
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 79/167 (47%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALSEYQLIDGLGPEVEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T + T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTQDFPYTVRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + + Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDNYTIL 482
>gi|374314854|ref|YP_005061282.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350498|gb|AEV28272.1| polyribonucleotide nucleotidyltransferase [Sphaerochaeta pleomorpha
str. Grapes]
Length = 701
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 88/187 (47%), Gaps = 24/187 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE------NPE 58
R DGRN Q+RP+ C +L RAHGSA +++G+T+ LA GT +E + E
Sbjct: 317 RTDGRNVEQIRPITCEVGVLARAHGSALFTRGETQALAVT---TLGTASDEQMFDTIDGE 373
Query: 59 KASIEVI----WKPRT----GQI--GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
K + + P + G++ G+ E + + +R L +I T ++ ++
Sbjct: 374 KTFSNFMLHYNFPPYSVGECGRLSTGRREIGHGHLAQRALSAIVPSKDKFPYTVRIVSEI 433
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH----LAVAICCCSAE-SGYCILDPTKLEEQKM 163
+ +G+ ++ C +L+DAG+P+ +A+ + A+ S Y +L EE +
Sbjct: 434 MESNGSSSMASVCGGCLSLMDAGVPISKPVAGIAMGLITEGADYSKYVVLSDILGEEDHL 493
Query: 164 KGFAYLV 170
+ V
Sbjct: 494 GDMDFKV 500
>gi|429462611|ref|YP_007184074.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338125|gb|AFZ82548.1| polyribonucleotide nucleotidyltransferase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 685
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGRN +RP+ +L RAHGSA +++G+T+ L V GTK++E
Sbjct: 304 RIDGRNTRTVRPIDIRLGVLPRAHGSALFTRGETQALVIV---TLGTKQDEQIIDSLLGE 360
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQV 108
+K P G+IG P++ + + +R L + + + TT ++ ++
Sbjct: 361 YRDKFIFHYNMPPFATGEIGRIGIPKRREVGHGYLARRALTPMLPDPKDFHYTTRLVSEI 420
Query: 109 VHDDGALLPCAINAACAALVDAGIPM-KHLA-VAICCCSAESGYCIL 153
+G+ ++ A++DAG+P+ KH+A VA+ + + IL
Sbjct: 421 TESNGSSSMASVCGGSLAMMDAGVPISKHVAGVAMGLILEDDKFAIL 467
>gi|384227802|ref|YP_005619547.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
gi|345538742|gb|AEO08719.1| polynucleotide phosphorylase/polyadenylase [Buchnera aphidicola
str. Ak (Acyrthosiphon kondoi)]
Length = 707
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 23/217 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR + +R L IL R HGSA +++G+T+ L +V + +N + +
Sbjct: 315 RIDGREKDMIRALDIRTGILPRTHGSALFTRGETQSLVSVTLGTSRDAQNLDELLGDRID 374
Query: 59 KASIEVIWKPRT----GQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ P + G +G P K EI + KR+L ++ N T V+ ++
Sbjct: 375 NFLFHYNFPPYSVGEIGMVGSP-KRREIGHGRLAKRSLLAVMPTLDNFPYTIRVVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCILDPTKLEEQKMKGFAY 168
+G+ ++ A AL+DAG+P+K I + G Y +L +E + +
Sbjct: 434 SNGSSSMASVCGASLALMDAGVPIKSAVAGIAMGLVKEGNKYVLLSDILGDEDHLGDMDF 493
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMS 205
V S EG + +Q + GI + H A++
Sbjct: 494 KV------SGTEEGITALQMDMKIEGITNEIIHAALN 524
>gi|325266482|ref|ZP_08133159.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
gi|324981925|gb|EGC17560.1| polyribonucleotide nucleotidyltransferase [Kingella denitrificans
ATCC 33394]
Length = 705
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 83/168 (49%), Gaps = 23/168 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-------- 56
R DGR+ +RP+ ++L R HGSA +++G+T+ LA GT ++E
Sbjct: 316 RIDGRDTRTVRPINIQTNVLPRTHGSALFTRGETQALAVA---TLGTSRDEQIIDALSGE 372
Query: 57 -PEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + + P G++G P K EI + KR L ++ + N T V+ +
Sbjct: 373 YTDRFMLHYNFPPYSTGEVGRVGAP-KRREIGHGRLAKRALVAVLPKPEDFNYTMRVVSE 431
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+ +G+ ++ C +L+ AG+P+K H+A +A+ ++ + +L
Sbjct: 432 ITESNGSSSMASVCGGCLSLLSAGVPLKAHVAGIAMGLILEDNKFAVL 479
>gi|218296616|ref|ZP_03497334.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
gi|218242929|gb|EED09462.1| Polyribonucleotide nucleotidyltransferase [Thermus aquaticus
Y51MC23]
Length = 713
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 325 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQIIDDL 381
Query: 57 --------------PEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTT 102
P ++ EV R + + E + + KR L+++ T
Sbjct: 382 GIDETDPFLVHYNFPPFSTGEV---KRLRGVSRREVGHGNLAKRALRAVLPSQEAFPYTI 438
Query: 103 SVIIQVVHDDGALLPCAINAACAALVDAGIPMK 135
V+ V+ +G+ + A AL+DAG+P+K
Sbjct: 439 RVVGDVLESNGSSSMATVCAGSLALMDAGVPVK 471
>gi|225439207|ref|XP_002270169.1| PREDICTED: polyribonucleotide nucleotidyltransferase [Vitis
vinifera]
Length = 946
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 18/163 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNEN------P 57
R+DGR P+ +R + C +L RAHGSA +++G+T+ LA V G + ++ +N
Sbjct: 437 RSDGRTPDGIRLINSQCGLLPRAHGSALFTRGETQSLAVVTLGDRQMAQRIDNLVDVDEL 496
Query: 58 EKASIEVIWKP----RTGQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ ++ + P G++G P + + ++ +R L+ I + T V +
Sbjct: 497 KRFYLQYSFPPSCVGEVGRMGAPSRREIGHGMLAERALEPILPSEDDFPYTIRVESTITE 556
Query: 111 DDGALLPCAINAACAALVDAGIPMKH----LAVAICCCSAESG 149
+G+ ++ C AL DAG+P+K+ +A+ + + E G
Sbjct: 557 SNGSSSMASVCGGCLALQDAGVPVKYSIAGIAMGMVLNTEEFG 599
>gi|294943374|ref|XP_002783844.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
gi|239896637|gb|EER15640.1| Exosome complex exonuclease RRP41, putative [Perkinsus marinus ATCC
50983]
Length = 248
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK----------AGTKKN 54
R DGR PN+LR L A GSA+ QG TKV+A V+GP+ AGT
Sbjct: 14 RLDGRRPNELRHLTLKIGDAPSADGSATLQQGLTKVVAHVFGPRPLQAASVGRAAGTMAR 73
Query: 55 ENP-------EKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQ 107
+ +S I + R + E ++ L+R +Q + + P + V +
Sbjct: 74 QGEAIVNVVYRTSSFATIDRKRRTTGDRNSTERQLWLQRIIQDAVLTEMFPKSCIDVHLT 133
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL 137
++ +DG+ L +NAA AALVDAGIP+K +
Sbjct: 134 ILQEDGSALAACVNAAAAALVDAGIPIKDM 163
>gi|209518519|ref|ZP_03267340.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
gi|209501064|gb|EEA01099.1| Polyribonucleotide nucleotidyltransferase [Burkholderia sp. H160]
Length = 711
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 63/257 (24%), Positives = 113/257 (43%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQSIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRERFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNRFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V +G + +Q + GI + A++ + H L + +A A
Sbjct: 497 DMDFKVAGTE------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVAG 550
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 551 ANTQLSEFAPRMITIKI 567
>gi|167585967|ref|ZP_02378355.1| polynucleotide phosphorylase/polyadenylase [Burkholderia ubonensis
Bu]
Length = 715
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVKCLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRA----ASAK 222
V +G + +Q + GI + A++ + H L + A A+ +
Sbjct: 501 KVAGTE------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTAAVSGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>gi|344171819|emb|CCA84441.1| polyribonucleotide nucleotidyltransferase [Ralstonia syzygii R24]
Length = 722
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ S+L RAHGSA +++G+T+ L A G K+ + E +
Sbjct: 315 RIDGRDTRTVRPIEIRSSVLPRAHGSALFTRGETQALVVATLGTKSDEQIIDALSGEYRD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + T ++ ++
Sbjct: 375 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALIPVLPKEDEFAYTIRLVSEITE 433
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+P+K H+A VA+ + + +L
Sbjct: 434 SNGSSSMASVCGGCLALMDAGVPVKAHVAGVAMGLILDGNKFAVL 478
>gi|300311084|ref|YP_003775176.1| polyribonucleotide nucleotidyltransferase [Herbaspirillum
seropedicae SmR1]
gi|300073869|gb|ADJ63268.1| polyribonucleotide nucleotidyltransferase protein [Herbaspirillum
seropedicae SmR1]
Length = 712
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKK-----NENPE 58
R DGR+ +RP++ +L R HGSA +++G+T+ L A G +K E +
Sbjct: 320 RIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIATLGTARDEQKIDGLLGEYSD 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + + ++ ++
Sbjct: 380 RFMLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALIAALPAADEFSYSVRLVSEITE 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 439 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLIKEGNKFAVLTDILGDEDHLGDMDF 498
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAM--SVDDYFHCLERGR----AASAK 222
V + G + +Q + GI + A+ + + H L + + A A+
Sbjct: 499 KVAGTA------NGITALQMDIKIQGITKEIMQVALEQAKEGRHHILGKMQEAVPAGRAE 552
Query: 223 LSDFLRRSLQSKL 235
LSDF R + K+
Sbjct: 553 LSDFAPRLITIKI 565
>gi|170582819|ref|XP_001896302.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
gi|158596526|gb|EDP34857.1| 3' exoribonuclease family, domain 1 containing protein [Brugia
malayi]
Length = 277
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 15/163 (9%)
Query: 7 DGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIEVI 65
DG+N R + +LH G+ G TK++ +V GPK TK + +P + I V
Sbjct: 44 DGQN--TFRSIVMQTGVLHDQKGTVYVEFGSTKIICSVDGPKEITKSADVDPTEGQIYVF 101
Query: 66 WKPRTGQ---------IGKPEKEYEII---LKRTLQSICILTINPNTTTSVIIQVVHDDG 113
K + + KE I ++ L+SI L + V I V++DDG
Sbjct: 102 LKNISAESNSLSGSNSFSASNKESNRIRNAIESALRSIVCLELFCKAQIDVEITVLNDDG 161
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156
+L ++ A+ AL+D+GI + + VA G I+DP+
Sbjct: 162 GVLAASLIASSLALIDSGIQVYDVCVAAHIVMLTDGRIIVDPS 204
>gi|187923336|ref|YP_001894978.1| polynucleotide phosphorylase/polyadenylase [Burkholderia
phytofirmans PsJN]
gi|226702630|sp|B2T2E3.1|PNP_BURPP RecName: Full=Polyribonucleotide nucleotidyltransferase; AltName:
Full=Polynucleotide phosphorylase; Short=PNPase
gi|187714530|gb|ACD15754.1| Polyribonucleotide nucleotidyltransferase [Burkholderia
phytofirmans PsJN]
Length = 718
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 17/165 (10%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN------ENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ + G ++N E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVATLGTKGDEQNIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALAACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVL 485
>gi|416939635|ref|ZP_11934390.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
gi|325524616|gb|EGD02631.1| polynucleotide phosphorylase/polyadenylase [Burkholderia sp. TJI49]
Length = 713
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/253 (24%), Positives = 112/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 320 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 379
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 380 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 438
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 439 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 498
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA----K 222
V +G + +Q + GI + A++ + H L + +A A +
Sbjct: 499 KVAGTE------QGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTSAVAGANTQ 552
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 553 LSEFAPRMITIKI 565
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,886,193,806
Number of Sequences: 23463169
Number of extensions: 153467259
Number of successful extensions: 339014
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2891
Number of HSP's successfully gapped in prelim test: 2609
Number of HSP's that attempted gapping in prelim test: 331282
Number of HSP's gapped (non-prelim): 6569
length of query: 243
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 105
effective length of database: 9,121,278,045
effective search space: 957734194725
effective search space used: 957734194725
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)