BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026141
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q84T68|EXOS5_ORYSJ Exosome complex exonuclease RRP46 homolog OS=Oryza sativa subsp.
japonica GN=RRP46 PE=1 SV=2
Length = 238
Score = 331 bits (848), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 161/239 (67%), Positives = 192/239 (80%), Gaps = 1/239 (0%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG+LLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA CAALV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LVFPNS S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + + E E G+ITS+THG MS +DYF C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 181 KEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV 238
>sp|Q9NQT4|EXOS5_HUMAN Exosome complex component RRP46 OS=Homo sapiens GN=EXOSC5 PE=1 SV=1
Length = 235
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 101/164 (61%), Gaps = 3/164 (1%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 183
>sp|Q9CRA8|EXOS5_MOUSE Exosome complex component RRP46 OS=Mus musculus GN=Exosc5 PE=1 SV=1
Length = 235
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+ G
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDSDGNLVLDPTTKQEKEAR--AILTF 183
>sp|O29757|ECX1_ARCFU Probable exosome complex exonuclease 1 OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=AF_0493 PE=1 SV=1
Length = 258
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ S+L RA GS G KV+AAV+GP+ ++ ++P KA I
Sbjct: 17 RLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPRHLQDPSKAIIR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + K +++ + + P + + ++V+ D
Sbjct: 77 YRYNMAPFSVEERKRPGPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGS 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFP 172
+NAA ALVDAG+PMK + ++ A+ G +LDP K E+ + FA+L+
Sbjct: 137 RTACLNAASVALVDAGVPMKGMITSVAVGKAD-GQLVLDPMKEEDNFGEADMPFAFLIRN 195
Query: 173 NSILSV 178
I S+
Sbjct: 196 GKIESI 201
>sp|Q7YRA3|EXOS4_BOVIN Exosome complex component RRP41 OS=Bos taurus GN=EXOSC4 PE=2 SV=3
Length = 245
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>sp|Q9NPD3|EXOS4_HUMAN Exosome complex component RRP41 OS=Homo sapiens GN=EXOSC4 PE=1 SV=3
Length = 245
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>sp|Q975G8|ECX1_SULTO Probable exosome complex exonuclease 1 OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_04430 PE=3 SV=2
Length = 243
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 10/159 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR P+++RP+ +L A GSA + G+TKV+AAVYGPK ++ P++A +
Sbjct: 16 RLDGRKPDEMRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDRAVLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V ++V+ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILVELFPRTVIDVFMEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILD 154
++ AA AL DAGIPM+ L + A+ G +LD
Sbjct: 136 RLVSLMAASMALADAGIPMRDLIAGVAVGKAD-GVLVLD 173
>sp|Q921I9|EXOS4_MOUSE Exosome complex component RRP41 OS=Mus musculus GN=Exosc4 PE=2 SV=3
Length = 245
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 85/169 (50%), Gaps = 16/169 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>sp|A2BKC0|ECX1_HYPBU Probable exosome complex exonuclease 1 OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=Hbut_0571 PE=3 SV=1
Length = 255
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P QLRP+ +L A GSA G T+V+AAVYGP+ ++ P++A I
Sbjct: 25 RHDGRLPEQLRPIRMEVGVLSNADGSALVEYGGTRVIAAVYGPREAHPRHVALPDRAIIR 84
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + +T + E E +++ L+++ I + P T V ++V+ DG
Sbjct: 85 CRYHMAPFSTAERKTPAPTRREVELSKVIREALEAVVISELYPRTAIDVYMEVLQSDGGT 144
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
AI AA AL DAGI M+ L + + G +LD ++E+ + + S+
Sbjct: 145 RTAAITAASLALADAGIAMRDLVAGVAVGKVD-GVLVLDIDEIEDNYAEADMPVAMAPSL 203
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
VL L+Q +G ++ D++ LE R + + + +L+ K
Sbjct: 204 DKVL-----LLQ------------LNGVLTHDEFVKALELARKGIQVIYNLQKEALRKK 245
>sp|O59223|ECX1_PYRHO Probable exosome complex exonuclease 1 OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1549 PE=3 SV=1
Length = 249
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ +K + P++A +
Sbjct: 17 RIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELHSKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T+ V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>sp|Q9YC03|ECX1_AERPE Probable exosome complex exonuclease 1 OS=Aeropyrum pernix (strain
ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_1447 PE=3 SV=1
Length = 246
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P LRP+ ILH A GSA G T+VLAAVYGP+ ++ P++A++
Sbjct: 17 RHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLPDRAALR 76
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + ++ + E E +++ L+ + + P T V ++V+ DG
Sbjct: 77 VRYHMAPFSTDERKSPAPSRREIELSKVVREALEPVVLAEEFPRTVIDVFLEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ AA AL DAGIPM+ L + + G ++D +LE+
Sbjct: 137 RTAAVTAASLALADAGIPMRALVGGVAVGKIQ-GVLVVDVDELED 180
>sp|Q8TYC1|ECX1_METKA Probable exosome complex exonuclease 1 OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=MK0381 PE=3 SV=1
Length = 239
Score = 87.8 bits (216), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 27/243 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA-GTKKNENPEKASIE 63
R DGR P+++RPL +L RA GSA G K++AAVYGP+ + + P++A +
Sbjct: 15 RLDGRKPDEMRPLKIQAGVLKRADGSAYLELGANKIVAAVYGPRELHPRHKQKPDRAVVR 74
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI + K L+ P T + ++V+ D
Sbjct: 75 FRYNMAPFSVDERKRPGPDRRSIEISKLSKEALEPAIFTEYYPRTAIDIFVEVLQADAGT 134
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
I+AA AL DAGI M+ L VA C G +LDP E+ G+ P ++
Sbjct: 135 RCAGISAASVALADAGIEMRDL-VAACAAGKVEGKVVLDPMYYED----GYGEADVPLAM 189
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
+ P E I G M+ ++ ++ + + RR+L+ K
Sbjct: 190 M-------------PKEGKITLLQMDGDMTPGEFKQAVKLAKKGCKIVYKEQRRALKEKY 236
Query: 236 PGD 238
GD
Sbjct: 237 GGD 239
>sp|Q9V119|ECX1_PYRAB Probable exosome complex exonuclease 1 OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=PYRAB06100 PE=1 SV=1
Length = 249
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI ++K L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEED 180
>sp|Q5JIR6|ECX1_PYRKO Probable exosome complex exonuclease 1 OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK1634 PE=3
SV=1
Length = 249
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 80/165 (48%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G KVLAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ +L + P T V I+++ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALLLHMFPRTAIDVFIEILQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPMK L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMKDL-VAACAAGKIDGEIVLDLNKEED 180
>sp|B6YSI2|ECX1_THEON Probable exosome complex exonuclease 1 OS=Thermococcus onnurineus
(strain NA1) GN=TON_0030 PE=3 SV=1
Length = 249
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 80/166 (48%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A GSA G K+LAAVYGP+ K+ + P++A +
Sbjct: 17 RIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T + I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAIDIFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACAAGKIEGEIVLDLNKEEDN 181
>sp|Q8U0L9|ECX1_PYRFU Probable exosome complex exonuclease 1 OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1568 PE=3 SV=1
Length = 250
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 81/165 (49%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LRP+ +L A+GSA G K++AAVYGP+ K+ + P++A +
Sbjct: 17 RLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIHPKHLQRPDRAILR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAIDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAGIPM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGIPMRDL-VAACSAGKIEGEIVLDLNKEED 180
>sp|Q9UXC2|ECX1_SULSO Probable exosome complex exonuclease 1 OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
GN=SSO0735 PE=1 SV=1
Length = 248
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
R DGR P++LR + +L A GSA + G+TK +AAVYGPK ++ + P++A +
Sbjct: 19 RTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLR 78
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S ++ + P T V +++ D
Sbjct: 79 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGS 138
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
++ AA AL DAGIPM+ L + A+ G ILD + E+
Sbjct: 139 RLVSLMAASLALADAGIPMRDLIAGVAVGKAD-GVIILDLNETED 182
>sp|Q97BZ5|ECX1_THEVO Probable exosome complex exonuclease 1 OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=TV0310 PE=3 SV=1
Length = 248
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 41/246 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR+ N+LRP+ +L+RA GSA G K++ VYGPK A K
Sbjct: 18 RLDGRSFNELRPIKIEAGVLNRADGSAYIEWGGNKIIVGVYGPKEAYPKHSQDIDHAVVK 77
Query: 53 KNENPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N S++ +P RT +I K ++ L S ++ P V I+V
Sbjct: 78 ARYNMAAFSVDERKRPGPDRRTMEISK-------VISEALSSSIMIEQFPRAEIDVYIEV 130
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+ D + AA AL DAGIPM+ + V C G+ +LD +K E+ F
Sbjct: 131 LQADAGTRIAGLTAATVALADAGIPMRDMVVG-CTAGKVDGHIVLDLSKEEDN----FGE 185
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
P +I+ P I+ G ++ D+++ A+ K+S R
Sbjct: 186 ADIPMAIM-------------PKTGEIVLLQMDGDVTEDEFYEATSMIIEATKKISQIQR 232
Query: 229 RSLQSK 234
+L +K
Sbjct: 233 NALLNK 238
>sp|Q4JB27|ECX1_SULAC Probable exosome complex exonuclease 1 OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=Saci_0610 PE=3 SV=1
Length = 243
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 117/239 (48%), Gaps = 27/239 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR ++LRP+ +L A GSA + G+TKV+AAVYGPK ++ P+KAS+
Sbjct: 16 RTDGRKLDELRPIKIELGVLKNADGSAIFEMGNTKVIAAVYGPKEMHPRHLALPDKASLR 75
Query: 64 VIW--------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + + + E E +++ L+S +L + P T + ++V+ D
Sbjct: 76 VRYHMTPFSTDERKNPAPSRREIELSKVIREALESTILLNLFPRTVIDIFMEVLQADAGT 135
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI 175
A+ AA AL DAGIPM+ L + A+ G +LD E++ M G A +
Sbjct: 136 RLVALMAASMALADAGIPMRDLIAGVAVGKAD-GSLVLDLN--EQEDMWGEA-----DMP 187
Query: 176 LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
++VLP SL Q ++ +G M+ D++ E + + + + +L++K
Sbjct: 188 IAVLP---SLGQ-------VVLLQLNGFMTPDEFRRAFELAQKGISSIYALQKEALKNK 236
>sp|O26779|ECX1_METTH Probable exosome complex exonuclease 1 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_683 PE=1 SV=1
Length = 240
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/167 (33%), Positives = 81/167 (48%), Gaps = 10/167 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++LRPL IL RA GS+ G K+L AVYGP+ A +K + P++A I
Sbjct: 17 REDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + G + EI I L+ IL P + V I+V+ +G
Sbjct: 77 CRYNMAPFSVEERKRPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQK 162
I AA AL DAGIPM+ + VA C +LD ++ E+++
Sbjct: 137 RCAGITAASVALADAGIPMRDMVVA-CAAGKVGDQVVLDLSEEEDKE 182
>sp|Q9HIP2|ECX1_THEAC Probable exosome complex exonuclease 1 OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1293 PE=3 SV=1
Length = 248
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 104/246 (42%), Gaps = 41/246 (16%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK------------AGTK 52
R DGR+ N+LRP+ +L+RA GSA G K++ VYGPK A K
Sbjct: 18 RLDGRSFNELRPIKIQAGVLNRADGSAYIEWGGNKIMVGVYGPKEAYPKHSQDIDHAIVK 77
Query: 53 KNENPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
N S++ +P RT +I K ++ L S ++ P V I+V
Sbjct: 78 ARYNMAAFSVDERKRPGPDRRTMEISK-------VISEALSSSIMIEQFPRAEIDVYIEV 130
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+ D + AA AL DAG+PM+ + V C G+ +LD +K E+ +
Sbjct: 131 LQADAGTRIAGLTAATVALADAGVPMRDMVVG-CTAGKVDGHMVLDLSKEEDN----YGE 185
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228
P +I+ P I+ G ++ D+ + ++ A+ ++S R
Sbjct: 186 ADIPIAIM-------------PKTGDIVLMQMDGDVTEDELYQAMDMIFEATKRISQIQR 232
Query: 229 RSLQSK 234
+L +K
Sbjct: 233 EALLNK 238
>sp|B1Y978|ECX1_PYRNV Probable exosome complex exonuclease 1 OS=Pyrobaculum neutrophilum
(strain DSM 2338 / JCM 9278 / V24Sta) GN=Tneu_1381 PE=3
SV=1
Length = 246
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + S ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVQISVGVISNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L + + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVIGVSVGLVD-GTVVLDLNGLEDQYGEG 183
>sp|C5A2B9|ECX1_THEGJ Probable exosome complex exonuclease 1 OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_2036 PE=3 SV=1
Length = 249
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIE 63
R DGR +LR + +L A GSA G K+LAAVYGP+ K+ + P+ A +
Sbjct: 17 RIDGRRKYELRKIHMEVGVLKNADGSAYIEWGKNKILAAVYGPREIHPKHLQRPDTAVLR 76
Query: 64 VIWK------PRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + + G + EI +++ L+ IL + P T V I+V+ D
Sbjct: 77 VRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTVVDVFIEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
I AA AL DAG+PM+ L VA C G +LD K E+
Sbjct: 137 RVAGITAASLALADAGVPMRDL-VAACAAGKIDGEIVLDLNKDED 180
>sp|A1RST0|ECX1_PYRIL Probable exosome complex exonuclease 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=Pisl_0836 PE=3 SV=1
Length = 246
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + I+ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVNITVGIVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW-------KPRTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + K +E EI IL+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPTRREIEISKILREALEPAVVLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAG+ M+ L + + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGVYMRDLVIGVSVGLVD-GAVVLDLNGLEDQYGEG 183
>sp|Q17533|EXOS4_CAEEL Putative exosome complex component RRP41 OS=Caenorhabditis elegans
GN=exos-4.1 PE=2 SV=2
Length = 240
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 77/168 (45%), Gaps = 10/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP G +K +I
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 65 IWKP-------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ R + K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
L +NA AL DAGIPMK +A A C G I+D T EE +
Sbjct: 130 LAACVNATSLALADAGIPMKGIASA-ATCGVVDGKPIVDLTSREETDL 176
>sp|Q8PTT8|ECX1_METMA Probable exosome complex exonuclease 1 OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2623 PE=3 SV=1
Length = 493
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 10/165 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR +++RP+ +L RA GS G K+L V+GP+ A ++++ + A I
Sbjct: 17 RLDGRRADEIRPMKIEVGVLSRADGSCYLEWGRNKILVGVFGPREAHPRRSQRADSAVIR 76
Query: 64 VIWKPRTGQI------GKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ + + G + EI + + + + + + P T + ++V+ D
Sbjct: 77 YRYNMASFSVEDRARPGPSRRSIEISKVSREAFEPVIMAELFPKTAIDIFVEVLQADAGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
AINA+ AL DAGIPMK L + C G +LD K E+
Sbjct: 137 RTAAINASSIALADAGIPMKGL-ITSCAFGKVDGKIVLDLNKEED 180
>sp|Q8ZVM9|ECX1_PYRAE Probable exosome complex exonuclease 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=PAE2207 PE=3 SV=1
Length = 246
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 87/171 (50%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E IL+ L+ +L P + V ++++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSRIDVFVEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L V + + G +LD LE+Q +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDQYGEG 183
>sp|O42894|RRP46_SCHPO Exosome complex component rrp46 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rrp46 PE=3 SV=1
Length = 226
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL R+ GS+ W QG +V+ V GP ++E KA++EV+ +P +G EK
Sbjct: 6 ILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKMISS 65
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGA-LLPCAINAACAALVDAGIPMKHLAVAI 141
+ L+ L P T V IQ++ +DG L IN A AL+DAGI +K++ AI
Sbjct: 66 RIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYIPCAI 125
Query: 142 CC 143
C
Sbjct: 126 NC 127
>sp|A8WQQ5|EXOS4_CAEBR Putative exosome complex component RRP41 OS=Caenorhabditis briggsae
GN=exos-4.1 PE=3 SV=1
Length = 240
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 79/168 (47%), Gaps = 10/168 (5%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP ++ +I
Sbjct: 10 RMDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYESKASKRLEDRCAIVC 69
Query: 65 IWKPRT----GQIGKPE---KEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ T + +P K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSTTTFSGLERKNRPRGDRKSTEISRLLEKAFESVILTESFPRSQIDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
L +NA AL DAGIPMK +A A C E+ I+D T EE +
Sbjct: 130 LAACVNATSLALADAGIPMKGIASAATCGIVETKP-IVDLTSREETDL 176
>sp|O42872|RRP41_SCHPO Exosome complex component ski6 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ski6 PE=2 SV=1
Length = 242
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKAS 61
R DGR +++R C I +GSA G+TKVL V GP +K + +
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVN 72
Query: 62 IEV-IWKPRTGQIGKPEKEYEII------LKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+E+ I T + K K I L+ T + I + P + SV + V+ DDGA
Sbjct: 73 VEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGA 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEEQKMKGFAYLVF 171
++ INA AL+DAGIP+K +CC +A ES +LD LEE + V
Sbjct: 133 VMASCINATTLALIDAGIPVKDF---VCCSTAGIVESDM-LLDLNSLEESALSWLTVAVL 188
Query: 172 PN 173
N
Sbjct: 189 GN 190
>sp|Q28F19|EXOS6_XENTR Exosome complex component MTR3 OS=Xenopus tropicalis GN=exosc6 PE=2
SV=1
Length = 270
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 16/192 (8%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSA--SWSQGDTKVLAAVYGPKA---GTKKNENPEKASI 62
GR P++ RP+ +L +A GSA G TKVL AV+GP+ G ++ E +
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 63 EVIWKP--RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ W P R G G ++ + L+ +L+ L P V + V+ D G+
Sbjct: 94 DLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGS 153
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LP A++ A AL DAGI M LA+ G +LDP EE+ G + S
Sbjct: 154 ALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSL---S 210
Query: 175 ILSVLPEGSSLV 186
+L L + S L+
Sbjct: 211 LLPTLNQVSGLI 222
>sp|A3MUP1|ECX1_PYRCJ Probable exosome complex exonuclease 1 OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=Pcal_0933 PE=3 SV=1
Length = 246
Score = 70.5 bits (171), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + + A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRAPDQMREVQIQVGTVSNADGSAVVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVMLEQYPRSRIDVFIEILQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
++ AA AL DAGI M+ L V + + G +LD LE+ +G
Sbjct: 134 TRVASLTAASLALADAGIYMRDLVVGVSVGLVD-GTVVLDLNGLEDNYGEG 183
>sp|A4WM67|ECX1_PYRAR Probable exosome complex exonuclease 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=Pars_1937 PE=3 SV=1
Length = 246
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 10/141 (7%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN-PEKASIE 63
RADGR P+Q+R + S ++ A GSA S G T +AAVYGP+ ++ + P++ +
Sbjct: 14 RADGRLPDQMREVKISVGVVSNADGSAMVSYGATTAVAAVYGPREMHPRHLSLPDRGVMR 73
Query: 64 VIW---------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V + + ++ + E E +L+ L+ +L P + V I+++ DG+
Sbjct: 74 VRYHMAPFSTKDERKSPTPSRREIEISKVLREALEPAVLLEQYPRSRIDVFIEIIQADGS 133
Query: 115 LLPCAINAACAALVDAGIPMK 135
++ AA AL DAGI M+
Sbjct: 134 TRVASLTAASLALADAGIYMR 154
>sp|A9A5C9|ECX1_NITMS Probable exosome complex exonuclease 1 OS=Nitrosopumilus maritimus
(strain SCM1) GN=Nmar_0432 PE=3 SV=1
Length = 244
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 75/166 (45%), Gaps = 10/166 (6%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK-AGTKKNENPEKASIE 63
R DGR ++ R + L A GS+ GD K+L V+GP+ K + + +
Sbjct: 17 RCDGRTVDEPRRIMIKAGGLKNADGSSYIEFGDNKILVGVFGPRDVHPKHMSDTDTGILR 76
Query: 64 VIWKPRTGQIGK------PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
V + +G+ +E EI ++K L+ +L P T V I+V+ DG
Sbjct: 77 VRYHMEPFSVGERKNPAPSRREIEISKVIKEALEPAVMLEKFPRTAVDVFIEVLQADGGT 136
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQ 161
A+ AA AL DAGIPM+ + AI + ILD E+Q
Sbjct: 137 RCAALTAASVALADAGIPMRDMVAAIAAGKV-ADTVILDVNNEEDQ 181
>sp|Q6P0I8|EXOS6_DANRE Exosome complex component MTR3 OS=Danio rerio GN=exosc6 PE=2 SV=2
Length = 271
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 12/162 (7%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP 68
R +RP+ C ++ +A GSA G+TK++ +VYGPK +++E K ++
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTG-RLVCDF 95
Query: 69 RTGQI----------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
R G E++ L +L+ L P + V + V+ +DG++L
Sbjct: 96 RLAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAH 155
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+ A AL DAGI M + + C C++DP+ EE
Sbjct: 156 AVTCASMALADAGIEMYDIVLG-CTLRQSGNACLVDPSYAEE 196
>sp|P46948|RRP41_YEAST Exosome complex component SKI6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SKI6 PE=1 SV=1
Length = 246
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 78/171 (45%), Gaps = 13/171 (7%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDT-TPLLDTNSLEENAM 182
>sp|P53256|RRP46_YEAST Exosome complex component RRP46 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RRP46 PE=1 SV=2
Length = 223
Score = 67.8 bits (164), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 20/221 (9%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL GS+ + DTKV+ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 ILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVV---HDDGAL----LPCAINAACAALVDAGIPMK 135
L+ L + P + Q++ D+ L C INAA ALVDAGI +
Sbjct: 69 KLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALN 128
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I ++ I+DPT E+ K+ LSV V G +
Sbjct: 129 SMCASIPIAIIKDTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKN 176
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
++ ++G + D F LE G +L +RR +Q +
Sbjct: 177 VLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>sp|Q9ZAE1|PNP_THETH Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
GN=pnp PE=3 SV=1
Length = 713
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>sp|Q72JJ8|PNP_THET2 Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
(strain HB27 / ATCC BAA-163 / DSM 7039) GN=pnp PE=3 SV=1
Length = 713
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>sp|Q5SJ75|PNP_THET8 Polyribonucleotide nucleotidyltransferase OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=pnp PE=3 SV=1
Length = 713
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNEN----- 56
E RADGR P LRP+ +L RAHGSA +++G+T+VL V GT ++E
Sbjct: 324 EGKRADGRGPKDLRPIWIEVDVLPRAHGSAVFTRGETQVLGTV---TLGTGRDEQILDDL 380
Query: 57 ----PEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVI 105
EK + + P R + + E + + KR L+++ + T V+
Sbjct: 381 GIDETEKFLVHYNFPPFSTGEVRRLRGVSRREVGHGNLAKRALKAVMPKEEDFPYTIRVV 440
Query: 106 IQVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
V+ +G+ + A C AL+DAG+P++ VA+ E+ IL
Sbjct: 441 GDVLESNGSSSMATVCAGCLALMDAGVPIRAPVAGVAMGLVWEENRAVIL 490
>sp|Q8GZQ3|PNP1_ARATH Polyribonucleotide nucleotidyltransferase 1, chloroplastic
OS=Arabidopsis thaliana GN=PNP1 PE=1 SV=1
Length = 922
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 76/145 (52%), Gaps = 14/145 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPE----- 58
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 59 -KASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591
>sp|Q69LE7|PNP1_ORYSJ Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
OS=Oryza sativa subsp. japonica GN=PNP1 PE=2 SV=1
Length = 902
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 14/152 (9%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKK------NENP 57
R+DGR+P +LRP+ C +L RAHGSA +++G+T+ LA V G ++ E
Sbjct: 448 RSDGRSPCELRPINSQCGLLPRAHGSALFTRGETQALAVVTLGDYQMAQRIDNLVDTEES 507
Query: 58 EKASIEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
+ ++ + P + G+IG P + + ++ +R L+ I + T V +
Sbjct: 508 KSFYLQYTFPPSSVGEVGRIGAPNRREIGHGMLAERALEPILPPEEDFPYTIRVESTITE 567
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAIC 142
+G+ ++ C AL DAG+P+K I
Sbjct: 568 SNGSSSMASVCGGCLALQDAGVPIKFPVAGIA 599
>sp|Q21YD1|PNP_RHOFD Polyribonucleotide nucleotidyltransferase OS=Rhodoferax
ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
GN=pnp PE=3 SV=1
Length = 706
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 82/168 (48%), Gaps = 23/168 (13%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+ +RP+ S+L R HGSA +++G+T+ L GT+++ +
Sbjct: 317 RIDGRDTRTVRPIEIRNSVLPRTHGSALFTRGETQALVVT---TLGTERDAQRIDALSGD 373
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQ 107
++ + P TG++G P K EI + KR L ++ T V+ +
Sbjct: 374 YEDRFMLHYNMPPFATGETGRVGTP-KRREIGHGRLAKRALMAVLPSKEEFPYTMRVVSE 432
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCIL 153
+ +G+ ++ C +L+DAG+PMK H+A +A+ E+ + +L
Sbjct: 433 ITESNGSSSMASVCGGCLSLMDAGVPMKAHVAGIAMGLIKEENRFAVL 480
>sp|Q2SZN9|PNP_BURTA Polyribonucleotide nucleotidyltransferase OS=Burkholderia
thailandensis (strain E264 / ATCC 700388 / DSM 13276 /
CIP 106301) GN=pnp PE=3 SV=1
Length = 713
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 114/257 (44%), Gaps = 37/257 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR+ +RP+ +L R HGSA +++G+T+ L GTK +E A +E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVA---TLGTKGDEQIIDA-LEG 377
Query: 65 IWKPR--------------TGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVII 106
++ R TG++G P K EI + KR L + + V+
Sbjct: 378 EYRDRFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVS 436
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMK 164
++ +G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E +
Sbjct: 437 EITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLG 496
Query: 165 GFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGRAASA- 221
+ V + EG + +Q + GI + A++ + H L + + A A
Sbjct: 497 DMDFKVAGTA------EGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKEAVAG 550
Query: 222 ---KLSDFLRRSLQSKL 235
+LS+F R + K+
Sbjct: 551 ANTQLSEFAPRMITIKI 567
>sp|Q4L5X7|PNP_STAHJ Polyribonucleotide nucleotidyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=pnp PE=3 SV=1
Length = 700
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-------------YGPKAGT 51
R DGR P+++RPL +L RAHGS +++G T+ L+ + GP+
Sbjct: 319 RPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTLGALGDYQLIDGLGPEQEK 378
Query: 52 KKNENPEKASIEVIWKPRTGQI---GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQV 108
+ + + V TG + G+ E + + +R L+ I T T ++ +V
Sbjct: 379 RFMHHYNFPNFSV---GETGPVRAPGRREIGHGALGERALKYIIPDTTEFPYTVRIVSEV 435
Query: 109 VHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+ +G+ +I + AL+DAG+P+K +A+ + E Y IL
Sbjct: 436 LESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYTIL 482
>sp|Q7VQM0|PNP_BLOFL Polyribonucleotide nucleotidyltransferase OS=Blochmannia floridanus
GN=pnp PE=3 SV=1
Length = 697
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 25/169 (14%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN---------E 55
R DGR+P+ +R + S IL R HGSA +++GDT+ L GT+++ +
Sbjct: 317 RFDGRSPDMIREIDISAGILPRTHGSALFTRGDTQALVT---ATLGTERDAQNLDELTGD 373
Query: 56 NPEKASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVII 106
++ + + P G +G P + EI R L +L + PN+ T V+
Sbjct: 374 RVDRFLLHYNFPPYCTGEIGIVGAPRRR-EIGHGR-LAKRGMLAVMPNSNEFPYTVRVVS 431
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+V +G+ +I A AL+DAG+P+K VA+ S + IL
Sbjct: 432 EVTESNGSSSMASICGASLALMDAGVPIKESVAGVAMGLIKENSNFIIL 480
>sp|A1V2L2|PNP_BURMS Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain SAVP1) GN=pnp PE=3 SV=1
Length = 713
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>sp|Q62IN1|PNP_BURMA Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain ATCC 23344) GN=pnp PE=3 SV=1
Length = 713
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>sp|A2S463|PNP_BURM9 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10229) GN=pnp PE=3 SV=1
Length = 713
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
>sp|A3MI97|PNP_BURM7 Polyribonucleotide nucleotidyltransferase OS=Burkholderia mallei
(strain NCTC 10247) GN=pnp PE=3 SV=1
Length = 713
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 29/253 (11%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTK-----KNENPE 58
R DGR+ +RP+ +L R HGSA +++G+T+ L A G K + + E E
Sbjct: 322 RIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKGDEQIIDALEGEYRE 381
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG++G P K EI + KR L + + V+ ++
Sbjct: 382 RFMLHYNMPPFATGETGRVGSP-KRREIGHGRLAKRALVACLPSADEFGYSIRVVSEITE 440
Query: 111 DDGALLPCAINAACAALVDAGIPMK-HLA-VAICCCSAESGYCILDPTKLEEQKMKGFAY 168
+G+ ++ C AL+DAG+PMK H+A +A+ + + +L +E + +
Sbjct: 441 SNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTDILGDEDHLGDMDF 500
Query: 169 LVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV--DDYFHCLERGR----AASAK 222
V + +G + +Q + GI + A++ + H L + + A+ +
Sbjct: 501 KVAGTA------DGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMKDAVAGANTQ 554
Query: 223 LSDFLRRSLQSKL 235
LS+F R + K+
Sbjct: 555 LSEFAPRMITIKI 567
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,534,367
Number of Sequences: 539616
Number of extensions: 3702943
Number of successful extensions: 10229
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 248
Number of HSP's that attempted gapping in prelim test: 8382
Number of HSP's gapped (non-prelim): 1347
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)