Query 026141
Match_columns 243
No_of_seqs 160 out of 1399
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:15:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026141.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026141hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02065 ECX1 archaeal exosom 100.0 1.5E-47 3.1E-52 324.1 29.3 215 2-235 6-230 (230)
2 PRK03983 exosome complex exonu 100.0 3.8E-47 8.2E-52 324.2 29.0 218 2-238 12-239 (244)
3 PRK00173 rph ribonuclease PH; 100.0 3.7E-45 8.1E-50 310.7 27.5 213 4-233 1-238 (238)
4 TIGR01966 RNasePH ribonuclease 100.0 2E-44 4.4E-49 305.9 27.3 209 5-231 1-235 (236)
5 PRK04282 exosome complex RNA-b 100.0 7.3E-44 1.6E-48 308.4 26.2 212 2-232 22-270 (271)
6 KOG1069 Exosomal 3'-5' exoribo 100.0 2.2E-44 4.8E-49 287.7 20.4 212 13-238 4-215 (217)
7 COG2123 RNase PH-related exori 100.0 1.5E-43 3.2E-48 296.8 24.7 212 2-232 21-271 (272)
8 KOG1068 Exosomal 3'-5' exoribo 100.0 1.4E-43 3E-48 292.9 19.4 223 2-242 11-243 (245)
9 COG0689 Rph RNase PH [Translat 100.0 7.5E-42 1.6E-46 283.7 23.6 214 2-232 6-230 (230)
10 KOG1614 Exosomal 3'-5' exoribo 100.0 5.2E-41 1.1E-45 275.3 22.9 215 2-238 20-276 (291)
11 TIGR03591 polynuc_phos polyrib 100.0 6.5E-38 1.4E-42 299.7 27.4 218 2-236 308-543 (684)
12 PRK11824 polynucleotide phosph 100.0 3E-37 6.5E-42 295.8 27.0 216 2-234 312-544 (693)
13 TIGR02696 pppGpp_PNP guanosine 100.0 4.7E-35 1E-39 276.2 24.1 217 2-240 333-573 (719)
14 PLN00207 polyribonucleotide nu 100.0 1.3E-34 2.9E-39 278.2 26.7 216 2-234 436-675 (891)
15 KOG1612 Exosomal 3'-5' exoribo 100.0 2.5E-33 5.4E-38 231.3 23.0 216 2-236 19-279 (288)
16 TIGR03591 polynuc_phos polyrib 100.0 3E-31 6.5E-36 254.0 25.5 199 15-237 5-220 (684)
17 PRK11824 polynucleotide phosph 100.0 3.7E-31 8E-36 253.8 25.3 198 14-235 13-227 (693)
18 KOG1613 Exosomal 3'-5' exoribo 100.0 1.9E-31 4.1E-36 218.7 14.3 210 2-228 34-297 (298)
19 PF01138 RNase_PH: 3' exoribon 100.0 2.3E-28 5.1E-33 189.5 14.3 121 13-133 1-132 (132)
20 PLN00207 polyribonucleotide nu 100.0 1.9E-26 4.1E-31 222.2 23.3 199 15-238 89-305 (891)
21 TIGR02696 pppGpp_PNP guanosine 99.9 5E-21 1.1E-25 181.4 21.7 210 15-235 17-248 (719)
22 KOG1067 Predicted RNA-binding 99.9 3.8E-21 8.2E-26 174.1 15.3 208 2-234 356-587 (760)
23 COG1185 Pnp Polyribonucleotide 99.8 4.5E-20 9.7E-25 171.7 14.6 222 2-240 310-548 (692)
24 COG1185 Pnp Polyribonucleotide 99.8 9.9E-18 2.2E-22 156.2 19.3 197 14-235 13-226 (692)
25 KOG1067 Predicted RNA-binding 99.7 4.9E-17 1.1E-21 147.6 13.3 199 13-237 54-270 (760)
26 PF03725 RNase_PH_C: 3' exorib 99.2 3.4E-11 7.3E-16 82.6 6.7 66 136-219 1-68 (68)
27 PF03764 EFG_IV: Elongation fa 43.0 1.2E+02 0.0025 22.3 6.4 55 77-131 57-120 (120)
28 PF09107 SelB-wing_3: Elongati 30.4 65 0.0014 20.3 2.7 30 201-230 8-37 (50)
29 cd01434 EFG_mtEFG1_IV EFG_mtEF 28.0 2.4E+02 0.0052 20.5 7.4 53 78-130 54-115 (116)
30 PF15645 Tox-PLDMTX: Dermonecr 27.1 69 0.0015 24.8 2.9 33 129-164 38-70 (135)
31 PF01402 RHH_1: Ribbon-helix-h 23.9 62 0.0013 18.6 1.7 33 203-235 5-37 (39)
32 cd01680 EFG_like_IV Elongation 23.1 2.9E+02 0.0064 19.8 7.6 53 78-130 54-115 (116)
33 cd01684 Tet_like_IV EF-G_domai 23.0 3.1E+02 0.0067 20.1 6.9 33 77-110 53-88 (115)
34 PRK15031 5-carboxymethyl-2-hyd 21.4 3.7E+02 0.0081 20.4 6.8 83 32-116 34-117 (126)
35 PF06241 DUF1012: Protein of u 20.7 3.6E+02 0.0079 22.1 5.9 35 135-169 112-146 (206)
No 1
>TIGR02065 ECX1 archaeal exosome-like complex exonuclease 1. This family contains the archaeal protein orthologous to the eukaryotic exosome protein Rrp41. It is somewhat more distantly related to the bacterial protein ribonuclease PH. An exosome-like complex has been demonstrated experimentally for the Archaea in Sulfolobus solfataricus, so members of this family are designated exosome complex exonuclease 1, after usage in SwissProt.
Probab=100.00 E-value=1.5e-47 Score=324.09 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCC-CCCCCCCceEEEEEec--CCCC------C
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGT-KKNENPEKASIEVIWK--PRTG------Q 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~-~~~~~~~~~~l~v~~~--p~~~------~ 72 (243)
+|+|+|||+++|+|++.+++|.++++||||++++|+|+|+|+|+||++.+ +..+.|+++.|+|+|. |++. .
T Consensus 6 ~~~R~DGR~~~e~R~~~~~~g~~~~a~GSa~~~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~a~~~~~~~~ 85 (230)
T TIGR02065 6 DGVRLDGRKPDELRPIKIEAGVLKNADGSAYVEFGGTKIIAAVYGPREMHPRHLQLPDRAVLRVRYHMAPFSTDERKRPG 85 (230)
T ss_pred CCcCCCCCCcccccCeEEEECCCCCCCeEEEEEECCcEEEEEEeCCCccccccccCCCceEEEEEEEeCCcccCCccCCC
Confidence 68999999999999999999999999999999999999999999998764 3456789999987764 5422 2
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026141 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++.+++++|+++|++++.++.||++.|+|.++||++||++++|++||+++||.|+||||++++++++++++ ++.+|
T Consensus 86 ~~~~~~~~s~~l~~~l~~~i~~~~~p~~~i~i~v~vl~~DG~~~~aai~aa~lAL~dagIp~~~~v~avtv~~~-~~~~v 164 (230)
T TIGR02065 86 PSRREIEISKVIREALEPAILLEQFPRTAIDVFIEVLQADAGTRCAGLTAASLALADAGIPMRDLVVGVAVGKV-DGVVV 164 (230)
T ss_pred CCccHHHHHHHHHHHHHHHhChhhcCCeEEEEEEEEEEcCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEEE-CCeEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999997 88999
Q ss_pred eCCCHHHHhhccccEEEEeeC-CccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 153 LDPTKLEEQKMKGFAYLVFPN-SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~~~-~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l 231 (243)
+|||.+|++.+.+.+++++.. .+ ++..++..|.++++++.+|++.|.++|+.++++|++++
T Consensus 165 ~Dpt~~Ee~~~~~~l~va~~~~~~------------------~i~~i~~~g~~~~e~~~~~l~~a~~~~~~l~~~~~~~l 226 (230)
T TIGR02065 165 LDLNEEEDMYGEADMPVAMMPKLG------------------EITLLQLDGDMTPDEFRQALDLAVKGIKIIYQIQREAL 226 (230)
T ss_pred ECCCHHHhhcCCCceEEEEeCCCC------------------CEEEEEEecCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743 22 22233457899999999999999999999999999999
Q ss_pred Hhhc
Q 026141 232 QSKL 235 (243)
Q Consensus 232 ~~~~ 235 (243)
++|.
T Consensus 227 ~~~~ 230 (230)
T TIGR02065 227 KNKY 230 (230)
T ss_pred HhhC
Confidence 8874
No 2
>PRK03983 exosome complex exonuclease Rrp41; Provisional
Probab=100.00 E-value=3.8e-47 Score=324.22 Aligned_cols=218 Identities=27% Similarity=0.418 Sum_probs=194.4
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCC-CCCCCCCceEEEEEe--cCCCC------C
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGT-KKNENPEKASIEVIW--KPRTG------Q 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~-~~~~~~~~~~l~v~~--~p~~~------~ 72 (243)
+|+|.|||+++++|++++++|.+++++|||++++|+|+|+|+|+||.+.. +..+.|+++.++|++ .|++. .
T Consensus 12 ~~~R~DGR~~~~~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~p~~~~~~~~~~ 91 (244)
T PRK03983 12 DGLRLDGRKPDELRPIKIEVGVLKNADGSAYLEWGNNKIIAAVYGPREMHPRHLQLPDRAVLRVRYNMAPFSVDERKRPG 91 (244)
T ss_pred CCCCCCCCCcCcccceEEEeCCCCCCCeEEEEEECCeEEEEEEecCCccccccccCCCcEEEEEEEEcCCCccccccCCC
Confidence 78999999999999999999999999999999999999999999998764 445689999998775 46432 2
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026141 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++.+++++|+++|++++.++.||++.|+|.++||++|||+++|++||+++||+|+||||++++++++++++ ++.+|
T Consensus 92 ~~~~~~~~s~~l~~~l~~~i~~~~~p~~~I~I~i~VL~~DG~~~~aai~Aa~lAL~dagIp~~~~v~avtv~~~-~~~~i 170 (244)
T PRK03983 92 PDRRSIEISKVIREALEPAIMLELFPRTVIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAGCAVGKV-DGVIV 170 (244)
T ss_pred CChhHHHHHHHHHHHHHHhccHHhCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHhcCCccccceeEEEEEEE-CCEEE
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999997 88999
Q ss_pred eCCCHHHHhhccccEEEEeeC-CccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 153 LDPTKLEEQKMKGFAYLVFPN-SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~~~-~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l 231 (243)
+|||..||+.+++.+++++++ .+ .++.++..|.++.+++.+|+++|.++|++++++|+++|
T Consensus 171 ~DPt~~Ee~~~~~~l~va~~~~~~------------------~I~~l~~~G~~~~~~~~~~i~~A~~~~~~i~~~i~~~l 232 (244)
T PRK03983 171 LDLNKEEDNYGEADMPVAIMPRLG------------------EITLLQLDGNLTREEFLEALELAKKGIKRIYQLQREAL 232 (244)
T ss_pred ECCCHHHhccCCceEEEEEECCCC------------------CEEEEEEecCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 33 12233357899999999999999999999999999999
Q ss_pred Hhhcccc
Q 026141 232 QSKLPGD 238 (243)
Q Consensus 232 ~~~~~~~ 238 (243)
+++..+.
T Consensus 233 ~~~~~~~ 239 (244)
T PRK03983 233 KSKYGEI 239 (244)
T ss_pred HHHHHhh
Confidence 9887754
No 3
>PRK00173 rph ribonuclease PH; Reviewed
Probab=100.00 E-value=3.7e-45 Score=310.72 Aligned_cols=213 Identities=23% Similarity=0.292 Sum_probs=185.9
Q ss_pred CCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEec--CCC-----------
Q 026141 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK--PRT----------- 70 (243)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~--p~~----------- 70 (243)
+|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|++|...++....+++|.|.|+|. |++
T Consensus 1 ~R~DGR~~~e~R~i~~~~g~~~~a~GSa~v~~G~T~Vla~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~ 80 (238)
T PRK00173 1 MRPDGRAADQLRPVTITRNFTKHAEGSVLVEFGDTKVLCTASVEEGVPRFLKGQGQGWVTAEYGMLPRATHTRNDREAAK 80 (238)
T ss_pred CCCCCCCcccccCeEEEeCCCCCCCeeEEEEecCcEEEEEEEcCCCCCCccCCCCcEEEEEEEecCCCCCcccccccccC
Confidence 5999999999999999999999999999999999999999998654332335678899887764 532
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHc-----------CCCCCCcee
Q 026141 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA-----------GIPMKHLAV 139 (243)
Q Consensus 71 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a-----------~ip~~~~~~ 139 (243)
+.+++++.+++++|+++|++++.++.++++.++|+++||++|||+++|++||+++||+|+ ++||+++|+
T Consensus 81 g~~~~~~~~~sr~i~r~lr~~i~l~~l~~~~i~v~v~VL~~DG~~~~aai~Aa~~AL~da~~~~~~~~~~~~ip~~~~~~ 160 (238)
T PRK00173 81 GKQGGRTQEIQRLIGRSLRAVVDLKALGERTITIDCDVIQADGGTRTASITGAYVALADALNKLVARGKLKKNPLKDQVA 160 (238)
T ss_pred CCCCccHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhhccCcccCCcccCcee
Confidence 223445689999999999999988999999999999999999999999999999999999 999999999
Q ss_pred EEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHH
Q 026141 140 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA 218 (243)
Q Consensus 140 avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~ 218 (243)
++|++++ ++.+|+|||.+||+.+++.+++++++.+ +|.+++.+ +.+.++++++.+|++.|.+
T Consensus 161 ~vt~~~~-~~~~lvDpt~~Ee~~~~~~l~v~~~~~~~i~~v~~~g----------------~g~~~~~e~l~~~i~~A~~ 223 (238)
T PRK00173 161 AVSVGIV-DGEPVLDLDYEEDSAAETDMNVVMTGSGGFVEVQGTA----------------EGAPFSREELDALLDLAEK 223 (238)
T ss_pred EEEEEEE-CCEEEECCCHHHHhcCCceEEEEECCCCCEEEEEccC----------------CCCCcCHHHHHHHHHHHHH
Confidence 9999998 8899999999999999999999998764 66555420 1238999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 026141 219 ASAKLSDFLRRSLQS 233 (243)
Q Consensus 219 ~~~~l~~~i~~~l~~ 233 (243)
.+++++++++++|++
T Consensus 224 ~~~~l~~~~~~~l~~ 238 (238)
T PRK00173 224 GIAELVALQKAALAD 238 (238)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998863
No 4
>TIGR01966 RNasePH ribonuclease PH. This bacterial enzyme, ribonuclease PH, performs the final 3'-trimming and modification of tRNA precursors. This model is restricted absolutely to bacteria. Related families outside the model include proteins described as probable exosome complex exonucleases (rRNA processing) and polyribonucleotide nucleotidyltransferases (mRNA degradation). The most divergent member within the family is RNase PH from Deinococcus radiodurans.
Probab=100.00 E-value=2e-44 Score=305.92 Aligned_cols=209 Identities=23% Similarity=0.312 Sum_probs=181.7
Q ss_pred CCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCC-CCCceEEEEEe--cCCCC----------
Q 026141 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIW--KPRTG---------- 71 (243)
Q Consensus 5 R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~-~~~~~~l~v~~--~p~~~---------- 71 (243)
|+|||+++|+|++++++|++++++|||+|++|+|+|+|+|+++. .+|... .+++|.+.|++ .|++.
T Consensus 1 R~DGR~~~e~R~i~i~~G~~~~A~GSa~v~~G~T~Vla~V~~~~-~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~r~~~~ 79 (236)
T TIGR01966 1 RPDGRKPDQLRPVSITRDFLKHAEGSVLIEFGNTKVLCTASVEE-KVPPFLRGSGEGWITAEYGMLPRATQTRNRRESAK 79 (236)
T ss_pred CCCCCCCCCccCeEEEeCCcCCCCceEEEEecCCEEEEEEEccC-ccCCcccCCCcEEEEEEEecCCCCCCCCccccccC
Confidence 89999999999999999999999999999999999999999744 344433 46788887765 46321
Q ss_pred -CCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHc-----------CCCCCCcee
Q 026141 72 -QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA-----------GIPMKHLAV 139 (243)
Q Consensus 72 -~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a-----------~ip~~~~~~ 139 (243)
.+++++.+++++|+|+|++++.++.|+++.|+|+++||++|||+++|++||+++||+|+ ++||+++|+
T Consensus 80 g~~~~~~~e~~~~i~r~lr~~i~l~~l~~~~i~I~v~VL~~DG~~~~aai~Aa~aAL~da~~~~~~~~~~~~ip~~~~~~ 159 (236)
T TIGR01966 80 GKQSGRTQEIQRLIGRALRAVVDLEALGERTIWIDCDVIQADGGTRTASITGAFVALADAISKLHKRGILKESPIRDFVA 159 (236)
T ss_pred CCCCccHHHHHHHHHHHHHHhcCHhhcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhhhhcCcccCCCccCcee
Confidence 22224678999999999999999999999999999999999999999999999999999 999999999
Q ss_pred EEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHH
Q 026141 140 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRA 218 (243)
Q Consensus 140 avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~ 218 (243)
++|++++ ++.+|+|||.+||+.+++.+++++++++ +|.+++.+ +.+.++++++.+|+++|.+
T Consensus 160 ~vt~~~~-~~~~v~Dpt~~Ee~~~~~~l~l~~~~~~~i~~i~~~g----------------~~~~~~~~~l~~~i~~a~~ 222 (236)
T TIGR01966 160 AVSVGIV-DGEPVLDLDYEEDSAADVDMNVVMTGSGGFVEVQGTA----------------EEGPFSRDELNKLLDLAKK 222 (236)
T ss_pred EEEEEEE-CCEEEECCChhHHhccCceEEEEEcCCCCEEEEEecC----------------CCCCcCHHHHHHHHHHHHH
Confidence 9999998 7899999999999999999999998764 45544310 1358999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 026141 219 ASAKLSDFLRRSL 231 (243)
Q Consensus 219 ~~~~l~~~i~~~l 231 (243)
++++++++|+++|
T Consensus 223 ~~~~l~~~~~~~l 235 (236)
T TIGR01966 223 GIRELIELQKQAL 235 (236)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999986
No 5
>PRK04282 exosome complex RNA-binding protein Rrp42; Provisional
Probab=100.00 E-value=7.3e-44 Score=308.41 Aligned_cols=212 Identities=23% Similarity=0.332 Sum_probs=186.4
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC------CCC
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT------GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~------~~~ 73 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++ +...|..+.|++|.+.|++ .|++ +.+
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~vl~~V~~-~~~~p~~~~~~~g~i~~~v~~~~~a~~~~~~~~~ 100 (271)
T PRK04282 22 KGKRIDGRKLDEYRPIEIETGVIKKAEGSALVKLGNTQVLAGVKL-EIGEPFPDTPNEGVLIVNAELLPLASPTFEPGPP 100 (271)
T ss_pred cCCCCCCCCCccccCeEEEeCCccCCCcEEEEEECCCEEEEEEEE-EEecCCCCCCCCCEEEEEEEECCCcCccccCCCC
Confidence 689999999999999999999999999999999999999999996 4556777789999887765 4542 233
Q ss_pred CCchHHHHHHHHHHHHh--------hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCC------------
Q 026141 74 GKPEKEYEIILKRTLQS--------ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP------------ 133 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~--------~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip------------ 133 (243)
++.+.+++++|+++|++ +|+.++..+|.|+|+++||++|||++||+++|+++||+|+++|
T Consensus 101 ~~~~~~l~~~l~r~l~~~~~~dl~~L~I~~g~~~w~i~Vdv~VL~~dG~~~daa~~Aa~aAL~~~~iP~~~~~~~~~~~~ 180 (271)
T PRK04282 101 DENAIELARVVDRGIRESKAIDLEKLVIEPGKKVWVVFIDVYVLDHDGNLLDASMLAAVAALLNTKVPAVEEGEDGVVDK 180 (271)
T ss_pred CHHHHHHHHHHHHHHhccCCccHHHcEEecCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCcEEEcCCceecc
Confidence 44567899999998754 5667777799999999999999999999999999999999995
Q ss_pred --------CCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCCC
Q 026141 134 --------MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAM 204 (243)
Q Consensus 134 --------~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~ 204 (243)
|+++|+++|++++ ++.+|+|||..||+.+++.+++++++++ +|.+.|. +.|.+
T Consensus 181 ~~~~~~l~~~~~p~~vt~~~~-~~~~v~Dpt~~Ee~~~~~~l~va~~~~g~i~~l~~~-----------------g~~~~ 242 (271)
T PRK04282 181 LGEDFPLPVNDKPVTVTFAKI-GNYLIVDPTLEEESVMDARITITTDEDGNIVAIQKS-----------------GIGSF 242 (271)
T ss_pred CCCcccCCCCCeeEEEEEEEE-CCEEEECCCHHHHhhcCceEEEEECCCCcEEEEEcC-----------------CCCCC
Confidence 9999999999998 8899999999999999999999998874 5555542 24689
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 205 SVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 205 ~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
+.+++.+|++.|.+.+++++++++++++
T Consensus 243 ~~~~l~~~i~~A~~~~~~l~~~~~~~l~ 270 (271)
T PRK04282 243 TEEEVDKAIDIALEKAKELREKLKEALG 270 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999884
No 6
>KOG1069 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp46 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.2e-44 Score=287.68 Aligned_cols=212 Identities=47% Similarity=0.704 Sum_probs=199.6
Q ss_pred CCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHhhh
Q 026141 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSIC 92 (243)
Q Consensus 13 e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~l~~~l~~~l~~~~ 92 (243)
.+|++.++.|+++++|||+.|++|+|+|+|+|+||.+++.+.+.|++..|+|.++|..|.+++.|+.+++.|+++|+++|
T Consensus 4 ~lr~~~cei~iLsr~dGSs~fsqgdT~V~c~V~GP~dvk~r~E~~~katleVi~rp~~G~~~~~eK~~e~iI~~tl~~~I 83 (217)
T KOG1069|consen 4 RLRGIACEISILSRPDGSSEFSQGDTKVICSVYGPIDVKARQEDPEKATLEVIWRPKSGVNGTVEKVLERIIRKTLSKAI 83 (217)
T ss_pred hhhhhhhhhceecCCCCccceecCCcEEEEEeeCCcchhhcccCchhceEEEEEecccCcchHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEee
Q 026141 93 ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFP 172 (243)
Q Consensus 93 ~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~ 172 (243)
.++.||+..|+|.++|+++||+.+++++|||++||.|+||||+++++++.+++.+++.+++|||..++..+.+..++.+.
T Consensus 84 ~l~l~Prt~iqVsiqvv~ddgs~LacaINaAclALvDaGIpl~~mfcai~~~~~~d~~lv~Dpt~~qek~~~~~~~lsf~ 163 (217)
T KOG1069|consen 84 ILELYPRTTIQVSIQVVEDDGSTLACAINAACLALVDAGIPLRSMFCAISCALHEDGVLVLDPTAKQEKISTARATLSFE 163 (217)
T ss_pred eeeecCCceEEEEEEEEecCCcchHHHHHHHHHHHHhcCCchHHhhhhceEEEecCccEEECCcHHhhhhhhceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999988899999999999998888887775
Q ss_pred CCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 026141 173 NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238 (243)
Q Consensus 173 ~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~ 238 (243)
... . .+++++.+..+|.++.++|..+++.|..++++++.++++.++++.+++
T Consensus 164 ~~~-----------~---~~~~vi~s~t~G~~~~d~lf~~le~a~~~~~~~f~f~r~~~q~~~s~~ 215 (217)
T KOG1069|consen 164 GGS-----------L---GEPKVIISETNGEKSEDQLFYVLELAQAAAQSLFPFYREVLQRKYSKS 215 (217)
T ss_pred cCC-----------C---CCcceEEEeccCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCcc
Confidence 421 0 145788888999999999999999999999999999999999987765
No 7
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-43 Score=296.77 Aligned_cols=212 Identities=24% Similarity=0.355 Sum_probs=192.5
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEE--ecCC---CCCCCCc
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVI--WKPR---TGQIGKP 76 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~--~~p~---~~~~~~~ 76 (243)
+|+|+|||.++|+|++++++|++++++|||+|++|+|+|+|+|+. +..+|+++.|++|.+.+| +.|. .+++|++
T Consensus 21 ~g~R~DGR~~~efR~ieI~~~vi~ka~GSa~VklG~Tqvv~gvK~-eig~Pf~DtP~eG~~~~n~El~Plas~~fE~Gpp 99 (272)
T COG2123 21 KGIRIDGRSFDEFRPLEIETGVIPKANGSALVKLGNTQVVVGVKA-EIGEPFPDTPNEGVLVVNVELSPLASPSFEPGPP 99 (272)
T ss_pred cCcccCCCCcccccceEEEeCceecCCCcEEEEecCeEEEEEEEc-ccCCCCCCCCCCceEEeeeeeeccccccccCCCC
Confidence 589999999999999999999999999999999999999999997 789999999999987655 5562 3455554
Q ss_pred ---hHHHHHHHHHHH--------HhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCC------------
Q 026141 77 ---EKEYEIILKRTL--------QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP------------ 133 (243)
Q Consensus 77 ---~~~l~~~l~~~l--------~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip------------ 133 (243)
..+++++++|.+ +++|+..+..+|.+++|++||++|||++||++.|+++||+++++|
T Consensus 100 de~aielsrvvdr~lr~s~aiDlekL~I~~g~kvwvv~vDv~vld~DGnl~Da~~lA~~aAL~~t~vP~~~~~~~~~~v~ 179 (272)
T COG2123 100 DELAIELSRVVDRGLRESKAIDLEKLCIEEGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDGEIVI 179 (272)
T ss_pred chhHHHHHHHHHHHHHhccCcchhheeEecCCEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhcCCCceeecCCcceee
Confidence 478999999986 467998899999999999999999999999999999999999988
Q ss_pred ----------CCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecC
Q 026141 134 ----------MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHG 202 (243)
Q Consensus 134 ----------~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g 202 (243)
+.++|.++|++++ ++.+++|||.+||..+++.+++.+++++ ++.++|. +.|
T Consensus 180 ~~~~~~~pl~~~~~pi~vt~a~i-g~~lvvDPsleEe~v~d~~ltit~~~~~~Iv~iqK~-----------------g~~ 241 (272)
T COG2123 180 EVEEEPVPLPVSNPPISVTFAKI-GNVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKV-----------------GGG 241 (272)
T ss_pred cccCCCcccccCCCceEEEEEEE-CCEEEeCCCcchhhhcCceEEEEECCCCcEEEEEEc-----------------CCC
Confidence 5688999999998 8999999999999999999999999885 8888775 367
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 203 AMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 203 ~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
.++++.+.+|++.|.+.+.++.+.+.+.|+
T Consensus 242 ~~~~~~~~~~~~~A~~~~~kl~~~~~~~L~ 271 (272)
T COG2123 242 SITESDLEKALKTALSKAEKLREALKEALK 271 (272)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999886
No 8
>KOG1068 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-43 Score=292.90 Aligned_cols=223 Identities=33% Similarity=0.420 Sum_probs=196.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCC-CCCceEEEEEec--CCC-------C
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIEVIWK--PRT-------G 71 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~-~~~~~~l~v~~~--p~~-------~ 71 (243)
||+|.|||.++|+|++..+.|++.+++|||++++|||+|+|.|+||++.+.+.. +|+++.+++.|. ++. .
T Consensus 11 eg~r~dgRr~~elR~i~~~~g~~~~a~GSay~E~GnTKVl~aV~GPre~~~~~~~~~~~a~lnc~~~~a~Fst~~r~~~~ 90 (245)
T KOG1068|consen 11 EGLRTDGRRPNELRRIYARIGVLTQADGSAYMEQGNTKVLCAVYGPREIRGKSARRPDKAVLNCEVSSAQFSTGDRKKRP 90 (245)
T ss_pred cccccCCCChhHhhhhhhhcCccccCCccchhhcCCeEEEEEEeCCcccccccccccccceEEEEEeeeccccchhccCC
Confidence 689999999999999999999999999999999999999999999998765433 688888887653 321 2
Q ss_pred CCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeE
Q 026141 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151 (243)
Q Consensus 72 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~ 151 (243)
..++++++++.+|+++|++.+.++.||+.+|+|+|+||++||+.+++++||+++||.|+||||+|+++++|+++. ++.+
T Consensus 91 ~~~rr~~e~s~~L~~afe~~I~~~lyPrsqIDI~v~VleddG~~laa~inaatlAL~daGI~m~D~i~~~t~~l~-~~~~ 169 (245)
T KOG1068|consen 91 KGDRREKELSLMLQQAFEPVILLELYPRSQIDIYVQVLEDDGSNLAAAINAATLALADAGIPMYDLITACTAGLA-DGTP 169 (245)
T ss_pred CccHHHHHHHHHHHHHHHHHHHhhhCccccceEEEEEEECCCccHHHHHHHHHHHHHHcCCChhhhhhhceeeec-CCcc
Confidence 345578999999999999999999999999999999999999999999999999999999999999999999997 7799
Q ss_pred EeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 152 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231 (243)
Q Consensus 152 lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l 231 (243)
++||+..||......++|++-.+. .....++..+.++.+.|...++.+..+|+++++.++.++
T Consensus 170 l~Dl~~~eesa~~~~ltVa~l~~~-----------------~~i~~l~~~~~~~~d~l~~vl~~a~~~c~~v~~~l~~~l 232 (245)
T KOG1068|consen 170 LLDLTSLEESARAPGLTVAALPNR-----------------EEIALLQLDERLHCDHLETVLELAIAGCKRVYERLRLVL 232 (245)
T ss_pred ccccccchhhccCCceEEEEecCc-----------------ceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888888764331 113334457899999999999999999999999999999
Q ss_pred HhhcccccccC
Q 026141 232 QSKLPGDLSKA 242 (243)
Q Consensus 232 ~~~~~~~~~~~ 242 (243)
.+++.+...++
T Consensus 233 ~~~l~~~~~~~ 243 (245)
T KOG1068|consen 233 REHLKNAESAL 243 (245)
T ss_pred HHHHHHhhhhc
Confidence 99998877664
No 9
>COG0689 Rph RNase PH [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-42 Score=283.74 Aligned_cols=214 Identities=26% Similarity=0.401 Sum_probs=189.7
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCC-CCCCceEEEEEe--cCCCC----CC-
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKN-ENPEKASIEVIW--KPRTG----QI- 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~-~~~~~~~l~v~~--~p~~~----~~- 73 (243)
+++|+|||.++|.|+++++.|++++++||+++++|+|+|+|+|+||++..|+. ..+++|++++.| .|++. .+
T Consensus 6 ~~~R~dgR~~delR~i~~~~~~~~~a~GS~~~~~G~tkVic~vsGp~e~~p~~l~~~~~g~~t~ey~m~p~sT~~R~~~~ 85 (230)
T COG0689 6 DGMRPDGRKPDELRPIKITRGVLKHAEGSSLIEFGNTKVICTVSGPREPVPRFLRGTGKGWLTAEYGMLPRSTDERKKRE 85 (230)
T ss_pred cCcCCCCCCcccccceEEEeccccCCCccEEEEeCCeEEEEEEecCCCCCChhhcCCCceEEEEEEeccccccccccccc
Confidence 68999999999999999999999999999999999999999999999877664 457789888776 46543 11
Q ss_pred -CC-chHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeE
Q 026141 74 -GK-PEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYC 151 (243)
Q Consensus 74 -~~-~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~ 151 (243)
.+ ++++++++|.++|++.+.++.||+..|+|++.|+++||+.+.|++||+++||+|||+||+++++|+++|++ ++.+
T Consensus 86 ~~~gR~~eisrli~~al~~~i~L~~~p~~~I~i~~dVlqaDggTrta~It~A~lAL~DAgipl~~~vaaiSvgi~-~~~~ 164 (230)
T COG0689 86 ADRGRTKEISRLIGRALRAVIDLELLPESTIDIDCDVLQADGGTRTASITGASLALADAGIPLRDLVAAISVGIV-DGVI 164 (230)
T ss_pred ccccchhHHHHHHHHHHHHHhhhhhcCccEEEEEEEEEECCCCeeeehhhHHHHHHHHcCCchhhheeEeEEEEE-CCce
Confidence 12 57899999999999999999999999999999999999999999999999999999999999999999998 7779
Q ss_pred EeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEE-EeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 152 ILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIIT-SVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230 (243)
Q Consensus 152 lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~-~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~ 230 (243)
++||+..|++.+...++|++..++.. ..|+ ....|++++++|.+++++|.++|+++++.++++
T Consensus 165 ~lDl~~~Eds~~~~d~~v~~~~~~~~----------------~ei~~~~~~~~~~~del~~lL~la~~g~~~~~~~~~~a 228 (230)
T COG0689 165 VLDLDYEEDSAAEADMNVVMTGNGGL----------------VEIQGLAEDGPFTEDELLELLDLAIKGCNELRELQREA 228 (230)
T ss_pred EecCcchhhcccccCceEEEEecCCe----------------EEEEEEeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998765321 1233 234789999999999999999999999999998
Q ss_pred HH
Q 026141 231 LQ 232 (243)
Q Consensus 231 l~ 232 (243)
|.
T Consensus 229 l~ 230 (230)
T COG0689 229 LA 230 (230)
T ss_pred hC
Confidence 73
No 10
>KOG1614 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp45 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-41 Score=275.28 Aligned_cols=215 Identities=20% Similarity=0.316 Sum_probs=192.7
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEE--EecCC---CCCCCCc
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV--IWKPR---TGQIGKP 76 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v--~~~p~---~~~~~~~ 76 (243)
.|.|.|||++.|+|.+.+++|. ..||+.+++|+|+|+|.|+. +..+|+.++|.+|.+.+ +++|. ++++|+.
T Consensus 20 ~g~R~DgR~l~efR~lei~fGk---e~gs~~vt~G~Tkvm~~vt~-~ia~Py~dRP~eG~~~I~telsPmA~~sfE~Gr~ 95 (291)
T KOG1614|consen 20 AGLRFDGRSLEEFRDLEIEFGK---EYGSVLVTMGNTKVMARVTA-QIAQPYIDRPHEGSFSIFTELSPMASPSFEPGRK 95 (291)
T ss_pred hcccccccchhhhhceEEEecc---ccccEEEEecCeeEEEEeeh-hhcCcccCCCCCCeeeeeeccccccccccCCCCc
Confidence 5899999999999999999994 88999999999999999998 78999999999998765 56774 3445543
Q ss_pred ---hHHHHHHHHHHH--------HhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCC------------
Q 026141 77 ---EKEYEIILKRTL--------QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP------------ 133 (243)
Q Consensus 77 ---~~~l~~~l~~~l--------~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip------------ 133 (243)
+.++.++|++++ +++|+..+..+|.|++|+++|+.|||++||++.|+++||++++.|
T Consensus 96 ~~~~v~l~Rliek~~R~S~aiD~EsLCI~aG~kvW~IRiDlhiLd~DGnlvDaA~iAviaaL~hFrrPdvTv~g~ev~ih 175 (291)
T KOG1614|consen 96 GESEVELSRLIEKALRRSKAIDTESLCIRAGEKVWLIRIDLHILDHDGNLVDAACIAVIAALMHFRRPDVTVGGEEVIIH 175 (291)
T ss_pred cchHHHHHHHHHHHHHhccccchHHHHhhhCCeEEEEEEEEEEEcCCCCeehhHHHHHHHHHHhcCCCCcccccceeEec
Confidence 578999999886 579999999999999999999999999999999999999999955
Q ss_pred -----------CCCceeEEEEEEecC-CeEEeCCCHHHHhhccccEEEEeeCC-ccccccCCCcccCCCCcccceEEEee
Q 026141 134 -----------MKHLAVAICCCSAES-GYCILDPTKLEEQKMKGFAYLVFPNS-ILSVLPEGSSLVQGEPMEHGIITSVT 200 (243)
Q Consensus 134 -----------~~~~~~avt~~~~~~-~~~lvDPt~~Ee~~~~~~~~v~~~~~-~~~~~~k~~~~~~~~~~~~~~i~~~~ 200 (243)
|+|+|.|+||+++.+ +.+++|||..||..++|.++|.+|++ ++|.++|+
T Consensus 176 p~eEr~PvPL~I~HmPIC~tf~ffnkG~ivviDpt~~Ee~~~dGs~vVt~Nk~rEVc~i~k~------------------ 237 (291)
T KOG1614|consen 176 PVEEREPVPLSIHHMPICFTFGFFNKGEIVVIDPTEKEEAVMDGSMVVTMNKNREVCAIQKS------------------ 237 (291)
T ss_pred ChhccCCcceeeeeccceEEEEEecCceEEEeCCcHHHHhccCceEEEEEcCCccEEEEecC------------------
Confidence 799999999999954 57899999999999999999999988 48888775
Q ss_pred cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 026141 201 HG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGD 238 (243)
Q Consensus 201 ~g-~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~ 238 (243)
.| .++..++..|.+.|.+.+.++...+.++|+++..++
T Consensus 238 G~~~~~~~~i~~C~k~A~~~a~~vt~ii~e~l~~d~~~r 276 (291)
T KOG1614|consen 238 GGEILDESVIERCYKLAKDRAVEVTGIILEALEEDQRER 276 (291)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33 789999999999999999999999999999887665
No 11
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=100.00 E-value=6.5e-38 Score=299.73 Aligned_cols=218 Identities=19% Similarity=0.277 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCC---CCCCceEE--EEEecCCC-----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKN---ENPEKASI--EVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~---~~~~~~~l--~v~~~p~~----- 70 (243)
+|+|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+|+ ||.+..... ...+++.+ +++|.|++
T Consensus 308 ~g~R~DGR~~~e~Rpi~~~~g~l~~a~GSa~~~~G~Tqvl~~vt~g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs~~e~~ 387 (684)
T TIGR03591 308 EGKRIDGRDLDTIRPISIEVGVLPRTHGSALFTRGETQALVVTTLGTERDEQIIDDLEGEYRKRFMLHYNFPPYSVGEVG 387 (684)
T ss_pred CCCCCCCCCCCCcCceEEEeCCCCCCCceEEEEeCCeEEEEEEecCCcccccCCcccCCCccEEEEEEEEcCCCCCCCcC
Confidence 68999999999999999999999999999999999999999994 876432111 11234554 56667742
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhhc-CCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026141 71 --GQIGKPEKEYEIILKRTLQSICIL-TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|++++.. +.|| |.|+|+++||++|||..+|+++|+++||+||||||+++|+++++|++.
T Consensus 388 ~~g~~~rrei~~~~l~~ral~~~i~~~~~~p-~tI~v~~~VLesdGs~~~Aai~aaslAL~dAgvP~~~~Vagvs~gli~ 466 (684)
T TIGR03591 388 RVGGPGRREIGHGALAERALKAVLPSEEEFP-YTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLIK 466 (684)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCccccCC-eEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCCcCCEEEEEEEEEc
Confidence 235667888999999999998885 5676 889999999999999999999999999999999999999999999985
Q ss_pred CC----eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHH
Q 026141 148 SG----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKL 223 (243)
Q Consensus 148 ~~----~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l 223 (243)
++ .+++||+..|+..++..++++.+.++++.+++.. ..+.++.+.|.+|+++|.+++++|
T Consensus 467 ~~~~~~~il~D~~~~Ed~~~d~d~~va~t~~gI~~lq~d~----------------k~~~i~~~~l~~al~~a~~~~~~I 530 (684)
T TIGR03591 467 EGDERFAVLSDILGDEDHLGDMDFKVAGTRDGITALQMDI----------------KIDGITREIMEQALEQAKEGRLHI 530 (684)
T ss_pred CCCcceEEEeCCChHHHhcCCceEEEEEcCCceEEEEEEc----------------CcCCcCHHHHHHHHHHHHHHHHHH
Confidence 32 5999999999999999999998877776665420 123689999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 026141 224 SDFLRRSLQSKLP 236 (243)
Q Consensus 224 ~~~i~~~l~~~~~ 236 (243)
++.|++++.++..
T Consensus 531 ~~~m~~~l~~~~~ 543 (684)
T TIGR03591 531 LGEMNKVISEPRA 543 (684)
T ss_pred HHHHHHHHhhhhc
Confidence 9999999998754
No 12
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=100.00 E-value=3e-37 Score=295.76 Aligned_cols=216 Identities=20% Similarity=0.276 Sum_probs=182.3
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCcc-CCCCC--CCCCceEE--EEEecCCC-----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKA-GTKKN--ENPEKASI--EVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~-~~~~~--~~~~~~~l--~v~~~p~~----- 70 (243)
+|+|+|||+++|+||+.+++|++++++|||+|++|+|+|+|+|+ ||.. ..+.+ ...+++.+ +++|.|++
T Consensus 312 ~g~R~DGR~~~e~Rpi~~~~g~l~~a~GSal~~~G~T~Vl~~vt~g~~~~~~~~~~~~~~~~~~~~~~y~~~pfs~~e~~ 391 (693)
T PRK11824 312 EGIRIDGRKLDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTLRDEQIIDGLEGEYKKRFMLHYNFPPYSVGETG 391 (693)
T ss_pred CCCCCCCCCcCcccceEEEeCCCCCCCceEEEEECCeEEEEEEecCCCcccccccccCCCCcEEEEEEEEcCCCCCCCcC
Confidence 68999999999999999999999999999999999999999995 7632 22211 11255655 45567742
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhhc-CCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026141 71 --GQIGKPEKEYEIILKRTLQSICIL-TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|++++.. +.|| |.|+|+++||++|||..+|+++|+++||+||||||+++++++++|++.
T Consensus 392 ~~~~~~rre~~~~~li~ral~~vi~~~~~~p-~~I~v~~~VLe~dGs~~~Aai~aaslAL~dAgvP~~~~Va~vs~gli~ 470 (693)
T PRK11824 392 RVGSPGRREIGHGALAERALEPVLPSEEEFP-YTIRVVSEILESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLIK 470 (693)
T ss_pred CCCCCChhHHHHHHHHHHHHHHhcCcccCCC-EEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceeEEEEEEEc
Confidence 224667888999999999999987 5666 899999999999999999999999999999999999999999999985
Q ss_pred CC---eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 026141 148 SG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224 (243)
Q Consensus 148 ~~---~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~ 224 (243)
++ .+++||+..|+..++..++++++.++++.++... ..|.++.+.+.+++++|.+++++|+
T Consensus 471 ~~~~~~il~D~~~~Ed~~~d~d~~va~t~~gi~~lq~d~----------------k~~~i~~~~l~~al~~a~~g~~~I~ 534 (693)
T PRK11824 471 EGDKYAVLTDILGDEDHLGDMDFKVAGTRDGITALQMDI----------------KIDGITREILEEALEQAKEGRLHIL 534 (693)
T ss_pred CCCceEEEcCCChhhHhhCCceEEEEecCCceEEEEEec----------------ccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 43 4899999999999999999998877766655210 1346899999999999999999999
Q ss_pred HHHHHHHHhh
Q 026141 225 DFLRRSLQSK 234 (243)
Q Consensus 225 ~~i~~~l~~~ 234 (243)
+.|++++...
T Consensus 535 ~~M~~aI~~~ 544 (693)
T PRK11824 535 GKMNEAISEP 544 (693)
T ss_pred HHHHHHhcCC
Confidence 9999998754
No 13
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=100.00 E-value=4.7e-35 Score=276.22 Aligned_cols=217 Identities=18% Similarity=0.256 Sum_probs=181.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCC-----CCCCceEEEEEecCCC-----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKN-----ENPEKASIEVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~-----~~~~~~~l~v~~~p~~----- 70 (243)
+|+|+|||.++++|++.+++|++++++|||+|+.|+|+|+|.+. ||....... +......++++|.|++
T Consensus 333 ~g~R~DGR~~~eiR~i~~~~g~l~~a~GSa~~~~G~Tqvl~~~tlG~~~~~q~~~~l~~~~~~~~~~~YnfpPFSt~er~ 412 (719)
T TIGR02696 333 EGVRIDGRGVTDIRPLDAEVQVIPRVHGSALFERGETQILGVTTLNMLKMEQQIDSLSPETSKRYMHHYNFPPYSTGETG 412 (719)
T ss_pred CCCCCCCCCccccccceeecCCCCCCCceEEEEecCcEEEEEEeCCCchhhhhcccccccccceEEEEEeCCCCcccCCC
Confidence 57899999999999999999999999999999999999999876 333222211 1223445677788863
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhh-cCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026141 71 --GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|++++. .+.||++ |.+..+||++||+...|++||+++||+||||||++++++|++|++.
T Consensus 413 ~~~~~~RReighg~La~rALe~vI~~~e~fP~T-IrvvseVLeSdGSss~AsIcaasLALmDAGVPmkd~VAgis~Gli~ 491 (719)
T TIGR02696 413 RVGSPKRREIGHGALAERALVPVLPSREEFPYA-IRQVSEALGSNGSTSMGSVCASTLSLLNAGVPLKAPVAGIAMGLIS 491 (719)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCcHhhCCCE-EEEEEEeeccCCcHHHHHHHHHHHHHHHcCcchhheeeEEEEEEec
Confidence 23467899999999999999998 6999976 8888899999999999999999999999999999999999999984
Q ss_pred C---Ce----EEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCC---CCHHHHHHHHHHHH
Q 026141 148 S---GY----CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGA---MSVDDYFHCLERGR 217 (243)
Q Consensus 148 ~---~~----~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~---~~~~~l~~~l~~a~ 217 (243)
+ +. +++||+..|+..++..+.++.+.+++..++ ..|. ++.+.|.+++++|.
T Consensus 492 e~~~~~~~~~iL~Di~g~ED~~Gdmdfkvagt~~gIt~lQ-------------------md~ki~gi~~e~l~~aL~~A~ 552 (719)
T TIGR02696 492 DEVDGETRYVALTDILGAEDAFGDMDFKVAGTSEFVTALQ-------------------LDTKLDGIPASVLASALKQAR 552 (719)
T ss_pred cccCCCcceeEEeCCCchhhhcCCceEEEEecCCCEEEEE-------------------EEeeECCCCHHHHHHHHHHHH
Confidence 4 33 899999999999988888876655444432 3443 69999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccc
Q 026141 218 AASAKLSDFLRRSLQSKLPGDLS 240 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~~~~~~~~ 240 (243)
++|.+|++.|++++... .+++
T Consensus 553 ~g~~~Il~~m~~al~~p--~~~s 573 (719)
T TIGR02696 553 DARLAILDVMAEAIDTP--DEMS 573 (719)
T ss_pred HHHHHHHHHHHHHHhCc--cccc
Confidence 99999999999999987 4444
No 14
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=100.00 E-value=1.3e-34 Score=278.23 Aligned_cols=216 Identities=22% Similarity=0.316 Sum_probs=179.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCCC------CCCceEEEEEecCCC----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKNE------NPEKASIEVIWKPRT---- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~------~~~~~~l~v~~~p~~---- 70 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+ ||.+.....+ ...+..++++|.|+.
T Consensus 436 ~g~R~DGR~~~eiRpI~~e~G~Lp~A~GSAlf~~G~TqVLatVtlGp~~~~q~~d~l~~~~~~~~f~~~y~fPPfs~ge~ 515 (891)
T PLN00207 436 GGKRSDGRTPDEIRPINSSCGLLPRAHGSALFTRGETQALAVVTLGDKQMAQRIDNLVDADEVKRFYLQYSFPPSCVGEV 515 (891)
T ss_pred CCCCCCCCCcCccceEEEEeCCcCCCCceEEEEECCeEEEEEEEecCccccccccccccccceeeEEEEEEcCCCCCccc
Confidence 68999999999999999999999999999999999999999996 8765432211 123345677888853
Q ss_pred ---CCCCCchHHHHHHHHHHHHhhhhcC-CCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEe
Q 026141 71 ---GQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146 (243)
Q Consensus 71 ---~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~ 146 (243)
+.+++++.+++++++|+|++++..+ .|| |.|+|+++||++||+...|++||+++||+||||||++++++|++|++
T Consensus 516 ~r~g~psrREi~hg~L~eRALrpvip~~~~fP-~tIrV~~~VLesDGSssmAaV~aaSLALmDAGIPmk~~VAGvsvGli 594 (891)
T PLN00207 516 GRIGAPSRREIGHGMLAERALEPILPSEDDFP-YTIRVESTITESNGSSSMASVCGGCLALQDAGVPVKCPIAGIAMGMV 594 (891)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCcccCCC-EEEEEEEEEEeCCCChHHHHHHHHHHHHHhcCCCccCceeEEEEEEE
Confidence 2245667889999999999999885 677 89999999999999999999999999999999999999999999998
Q ss_pred cC-------Ce--EEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHH
Q 026141 147 ES-------GY--CILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 217 (243)
Q Consensus 147 ~~-------~~--~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~ 217 (243)
.+ +. +++||+..|+..++..+.++.+.+++..++-. + ..+.++.+.|.++++.|.
T Consensus 595 ~d~~~~~~~g~~~IL~Dp~g~Ed~~gdmDfkVAgT~~gIt~iqmd-----~-----------k~~gis~e~l~eAL~~A~ 658 (891)
T PLN00207 595 LDTEEFGGDGSPLILSDITGSEDASGDMDFKVAGNEDGITAFQMD-----I-----------KVGGITLPIMERALLQAK 658 (891)
T ss_pred ecccccCCCCcEEEEeCCCHHHHhcCCceEEEEecccceEEEEEe-----c-----------ccCCCCHHHHHHHHHHHH
Confidence 32 23 56799999999999999888765554433210 0 123579999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026141 218 AASAKLSDFLRRSLQSK 234 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~~ 234 (243)
+++..|++.|++++...
T Consensus 659 ~g~~~Il~~M~~~i~~p 675 (891)
T PLN00207 659 DGRKHILAEMSKCSPPP 675 (891)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999998764
No 15
>KOG1612 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-33 Score=231.33 Aligned_cols=216 Identities=25% Similarity=0.313 Sum_probs=180.7
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCC-eEEEEEEEcCccCCCCCCCCCceEE--EEEecCCC-----CCC
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGD-TKVLAAVYGPKAGTKKNENPEKASI--EVIWKPRT-----GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~-T~Vi~~V~gp~~~~~~~~~~~~~~l--~v~~~p~~-----~~~ 73 (243)
+.+|.|||++++|||+.++++++++++|||+|++|+ |.|+++|++ +...|..+.|+++.+ .|+++|.+ |+.
T Consensus 19 ~~iR~DGR~~~~~Rpi~vetdVlp~tNGSaRVk~g~~tdiivgVKa-Evg~~~~~~p~egk~~~~VD~S~sasp~f~gRg 97 (288)
T KOG1612|consen 19 PDIRNDGRSCHQFRPIEVETDVLPGTNGSARVKLGDGTDIIVGVKA-EVGSPDDETPVEGKYLFFVDCSPSASPQFQGRG 97 (288)
T ss_pred cccccCCcCccccceEEEEeccccCCCCcEEEEecCCceEEEEEee-eccCccccCCCCCeEEEEEEecCCcCccccCCC
Confidence 468999999999999999999999999999999998 999999998 778899999999975 45666643 232
Q ss_pred CCc-hHHHHHHHHHHHHh---------hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCC---------
Q 026141 74 GKP-EKEYEIILKRTLQS---------ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPM--------- 134 (243)
Q Consensus 74 ~~~-~~~l~~~l~~~l~~---------~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~--------- 134 (243)
+.. ..++...++++|.+ +++.++| +|.|+||+.|++.|||++||...|+.+||.++.+|-
T Consensus 98 gde~~~eltsaLq~~l~~~~sgv~ls~L~lt~~~-~W~i~VDvlVi~s~gn~~dAiS~Ai~~AL~~T~lPkv~v~~dd~~ 176 (288)
T KOG1612|consen 98 GDELVEELTSALQRVLNSLGSGVDLSKLQLTPGY-CWKIYVDVLVISSDGNLLDAISIAIYAALNNTRLPKVIVAFDDDG 176 (288)
T ss_pred hhhHHHHHHHHHHHHHhCcCcccchhheeccCCe-eEEEEEeEEEEecCCCHHHHHHHHHHHHHhcccCCccccccccCC
Confidence 222 35777778887765 4566675 899999999999999999999999999999999981
Q ss_pred ------------------CCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceE
Q 026141 135 ------------------KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGII 196 (243)
Q Consensus 135 ------------------~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i 196 (243)
-.+|+-++++.+ +..++||||.+||+++.+.+.|.+++.+++...+.
T Consensus 177 ~~~i~~s~~~Yd~~~~~~~~~P~ivtlskI-G~~~lVD~T~eEe~~a~s~l~Isv~a~givs~~r~-------------- 241 (288)
T KOG1612|consen 177 EVEILLSDEEYDLMVKLVENVPLIVTLSKI-GTNMLVDPTAEEESVANSGLLISVSAGGIVSCTRS-------------- 241 (288)
T ss_pred ceeeccCcccchhhhhhcccCCEEEEEEee-cceEEccCCccHHHhhhcceEEEEecCcceEEEEE--------------
Confidence 235666788886 88999999999999999999999888765544332
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026141 197 TSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 236 (243)
Q Consensus 197 ~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~ 236 (243)
.+.|.+.++.+.+|++.+.+..+.++..+.+.|.+...
T Consensus 242 --VG~G~l~~s~i~~mle~~~~~~e~l~~~l~k~L~~~e~ 279 (288)
T KOG1612|consen 242 --VGLGDLDPSSIPEMLEQGKAVVETLAPDLVKSLENEED 279 (288)
T ss_pred --ecCCCCChhhHHHHHHHHHHHHHhhhHHHHHHhhhhhh
Confidence 24567999999999999999999999999998877544
No 16
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=100.00 E-value=3e-31 Score=253.96 Aligned_cols=199 Identities=19% Similarity=0.188 Sum_probs=167.0
Q ss_pred CCceEEeCCC-CCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCC--------------CCCCCCchHH
Q 026141 15 RPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR--------------TGQIGKPEKE 79 (243)
Q Consensus 15 R~i~i~~~~l-~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~ 79 (243)
|++.+++|.+ .+|||||++++|+|+|+|+|++|.+.++. .+.+.|+|+|.+. .|.+++++.+
T Consensus 5 R~i~ie~G~la~~AdGSa~v~~G~T~VlatV~~~~~~~~~---~df~pL~vey~e~~~A~gkipg~f~kReg~p~~~eil 81 (684)
T TIGR03591 5 RTLTLETGKIARQADGAVVVRYGDTVVLVTVVAAKEAKEG---QDFFPLTVNYQEKFYAAGKIPGGFFKREGRPSEKETL 81 (684)
T ss_pred ccEEEEECCcCCCCCeEEEEEECCeEEEEEEEcCCCCCCC---CceEeEEEEEEehhhhccCCCCCcccCCCCCCHHHHH
Confidence 7999999999 57999999999999999999998764332 3567888888641 1334556788
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChH-H-HHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCH
Q 026141 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALL-P-CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 157 (243)
Q Consensus 80 l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~-~-a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~ 157 (243)
++++|+|+|++++.. +| .|.|+|+++||++||+.. + +++||+++||++++|||+++++||+++++ +|.+++|||.
T Consensus 82 ~srlIdR~lrplfp~-~~-~~~i~V~~~VLs~Dg~~~~d~aai~aAsaAL~~s~IP~~~~v~av~vg~i-dg~~ildPt~ 158 (684)
T TIGR03591 82 TSRLIDRPIRPLFPK-GF-RNEVQVVATVLSYDPENDPDILAIIGASAALAISGIPFNGPIAAVRVGYI-DGQYVLNPTV 158 (684)
T ss_pred HHHHHhhHHHHhcCC-CC-CceEEEEEEEEecCcCCchHHHHHHHHHHHHHhcCCCcCCCeEEEEEEEE-CCEEEEcCCH
Confidence 999999999998653 33 499999999999999974 4 99999999999999999999999999997 8899999999
Q ss_pred HHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 026141 158 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPG 237 (243)
Q Consensus 158 ~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~ 237 (243)
.|++.++..++++.+.+ .+.|.++ ..+.++.+++.++++.|.+++++++++++++++++...
T Consensus 159 ~E~~~s~~~l~va~t~~-~i~mie~-----------------~~~~i~e~~l~~al~~a~~~~~~i~~~~~~~~~~~~~~ 220 (684)
T TIGR03591 159 DELEKSDLDLVVAGTKD-AVLMVES-----------------EAKELSEEVMLGAIEFGHEEIQPVIEAIEELAEEAGKE 220 (684)
T ss_pred HHHhhCCceEEEEccCC-cEEEEEc-----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999988875432 3444432 12369999999999999999999999999999887754
No 17
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=100.00 E-value=3.7e-31 Score=253.85 Aligned_cols=198 Identities=20% Similarity=0.189 Sum_probs=168.0
Q ss_pred CCCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCC--------------CCCCCCchH
Q 026141 14 LRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR--------------TGQIGKPEK 78 (243)
Q Consensus 14 ~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~ 78 (243)
-|++.+++|.+. +|||||++++|+|+|+|+|++|.+.++ ..+.+.|+|+|.+. .|.+++++.
T Consensus 13 ~r~i~~e~G~ia~qAdGSa~v~~G~T~VlatV~~~~~~~~---~~df~pL~v~y~e~~~A~gkiP~~f~kreg~pse~ei 89 (693)
T PRK11824 13 GRTLTLETGKLARQANGAVLVRYGDTVVLVTVVASKEPKE---GQDFFPLTVDYEEKTYAAGKIPGGFFKREGRPSEKET 89 (693)
T ss_pred CccEEEEECCcCCCCCeEEEEEECCeEEEEEEEcCCCCCC---CCCeeeeEEEEEehhhhccCCCcccccCCCCCChHHH
Confidence 379999999996 699999999999999999999876322 24567788887641 133455678
Q ss_pred HHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh-HH-HHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCC
Q 026141 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL-LP-CAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156 (243)
Q Consensus 79 ~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~-~~-a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt 156 (243)
+++++|+|+|++++. +.++|.|+|+++||++||+. .+ +++||+++||.+++|||+++++||+++++ +|.+|+|||
T Consensus 90 l~srlIdR~lrplfp--~~~~~~i~I~~~VL~~Dg~~~~d~aai~aAsaAL~~s~IP~~~~v~av~vg~i-~g~~ivdPt 166 (693)
T PRK11824 90 LTSRLIDRPIRPLFP--KGFRNEVQVVATVLSVDPENDPDILAMIGASAALSISGIPFNGPIAAVRVGYI-DGEFVLNPT 166 (693)
T ss_pred HHHHHHhhhHHHhCC--CCCCeEEEEEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCcCCCeEEEEEEEE-CCEEEEcCC
Confidence 899999999999865 33579999999999999976 45 89999999999999999999999999997 889999999
Q ss_pred HHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026141 157 KLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235 (243)
Q Consensus 157 ~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~ 235 (243)
.+|++.++..++++.+.+ .+.|.+. +.+.++.+++.++++.|.++++++++++++.+++..
T Consensus 167 ~~E~~~s~~~l~va~t~~-~i~mie~-----------------~~~~l~e~~l~~al~~a~~~~~~i~~~~~~~~~~~~ 227 (693)
T PRK11824 167 VEELEESDLDLVVAGTKD-AVLMVES-----------------EAKELSEEVMLEAIEFGHEAIQELIDAQEELAAEAG 227 (693)
T ss_pred HHHHhhCcceEEEEEccC-ceEEEEC-----------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998887654 4445442 134699999999999999999999999999998877
No 18
>KOG1613 consensus Exosomal 3'-5' exoribonuclease complex, subunit Rrp43 [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.9e-31 Score=218.71 Aligned_cols=210 Identities=22% Similarity=0.269 Sum_probs=170.3
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cC---CCCCCCCc
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KP---RTGQIGKP 76 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p---~~~~~~~~ 76 (243)
+|+|+|||+..|+|.+.++.|.++.+|||+.++.|+|.|+|++++ +...|..+.|++|.+-.|| +| ..+++|++
T Consensus 34 e~~RpdgR~lgefRdt~in~g~IsTangSal~K~G~ttvi~~Ik~-ei~epstdapdeg~Iv~n~~lpplcs~r~RpG~p 112 (298)
T KOG1613|consen 34 EGIRPDGRKLGEFRDTAINAGNISTANGSALLKSGKTTVICGIKA-EIAEPSTDAPDEGDIVPNYALPPLCSSRFRPGPP 112 (298)
T ss_pred cccCcchhhhhHHhhhheecCceeccCcHHHHhcCCcEEEEEeee-eecccccCCCCCcceeecccCCcccccCCCCCCC
Confidence 689999999999999999999999999999999999999999999 7889999999999987665 44 34556654
Q ss_pred ---hHHHHHHHHHHH--------HhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCC----------
Q 026141 77 ---EKEYEIILKRTL--------QSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK---------- 135 (243)
Q Consensus 77 ---~~~l~~~l~~~l--------~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~---------- 135 (243)
+.-+++.|..++ +.+|+..++..|.++.++.+|++||+++|+|.+|.++||.+-.+|..
T Consensus 113 ~dea~viSq~LhdtIl~S~ii~~k~Lci~~gKaawvlYadIicLd~dG~~fDa~w~al~aAlknvklP~a~ide~~~~~~ 192 (298)
T KOG1613|consen 113 TDEAQVISQKLHDTILHSRIIPKKALCIKAGKAAWVLYADIICLDYDGPVFDACWNALMAALKNVKLPRAFIDERASDLR 192 (298)
T ss_pred chHHHHHHHHHHHHHHhcCCcchhhheeeccceeeEEEEEEEEEcCCCcHHHHHHHHHHHHHhcCCCceeeecccchhhh
Confidence 345666665543 56899999999999999999999999999999999999999999921
Q ss_pred ---------------------Ccee-----EEEEE-EecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccC
Q 026141 136 ---------------------HLAV-----AICCC-SAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQ 187 (243)
Q Consensus 136 ---------------------~~~~-----avt~~-~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~ 187 (243)
..+. ..+.. ++.+..++.|||.+||..+++.++|++++++ .+.+.|.+
T Consensus 193 ~t~e~~ic~~tlt~p~~ln~e~r~~~~~n~~fS~~~vl~~~li~adpT~eEE~l~~~~lTIvldss~n~v~l~k~G---- 268 (298)
T KOG1613|consen 193 MTIEEIICDQTLTVPLMLNAENRAFASQNSDFSEEEVLDDVLIAADPTEEEETLITSTLTIVLDSSGNYVQLTKVG---- 268 (298)
T ss_pred hhHHHHHHhhhhcchhhhccccccccccCCCccHHHhhcceeEecCCCchhhhhhhceEEEEEcCCCCEEEEEecC----
Confidence 0000 11222 3434556699999999999999999998875 44444431
Q ss_pred CCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228 (243)
Q Consensus 188 ~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~ 228 (243)
+.+..+++.++.|+++|..+++++.+.+.
T Consensus 269 ------------G~al~~~~~iK~c~elar~Rakelk~~~~ 297 (298)
T KOG1613|consen 269 ------------GGALITPEMIKRCLELARVRAKELKTRFN 297 (298)
T ss_pred ------------cccccCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 13367789999999999999999987764
No 19
>PF01138 RNase_PH: 3' exoribonuclease family, domain 1 This Prosite family only includes Ribonuclease PH; InterPro: IPR001247 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 1, which has a core 2-layer alpha/beta structure with a left-handed crossover, similar to that found in ribosomal protein S5. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; PDB: 2C38_G 2BR2_O 2C37_M 3L7Z_A 2JEB_A 2C39_A 2JEA_A 2JE6_A 3U1K_A 4AM3_B ....
Probab=99.96 E-value=2.3e-28 Score=189.54 Aligned_cols=121 Identities=42% Similarity=0.627 Sum_probs=105.4
Q ss_pred CCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCC-CceEEEE--EecCCC-------CCCCCchHHHHH
Q 026141 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENP-EKASIEV--IWKPRT-------GQIGKPEKEYEI 82 (243)
Q Consensus 13 e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~-~~~~l~v--~~~p~~-------~~~~~~~~~l~~ 82 (243)
|+|++.+++|++++++|||+|++|+|+|+|+|++|.+.+|+.+.+ .+|.+.| ++.|.. +.++..++++++
T Consensus 1 e~R~i~i~~~~~~~a~GSa~v~~G~T~V~~~V~~~~~~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (132)
T PF01138_consen 1 ELRPISIETGVLPRADGSARVSLGNTKVICSVKGPIEPPPSNERDDAEGRLTVEVEFSPFASPSFRRGGRPDEEERELSS 80 (132)
T ss_dssp CBEEEEEEESSSSSSSEEEEEEETTEEEEEEEEEEEEGCSCSTTSSSSEEEEEEEEECCCGSTSSSSSSSTHHHHHHHHH
T ss_pred CCccEEEEeCCCCCCCeEEEEEECCeEEEEEEEecccccchhcccCCCceEEEEEEeccccccccccccccchhHHHHHH
Confidence 799999999999999999999999999999999988776766633 3565554 556643 223334689999
Q ss_pred HHHHHHHhhhhcCCCCceEEEEEEEEEeCCC-ChHHHHHHHHHHHHHHcCCC
Q 026141 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDG-ALLPCAINAACAALVDAGIP 133 (243)
Q Consensus 83 ~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG-~~~~a~~~a~~~AL~~a~ip 133 (243)
+|+++|++.+.+++||+|.|+|+++||++|| |++++++||+++||+|+|||
T Consensus 81 ~l~~~l~~~~~~~~~~~~~i~v~v~vl~~dG~~~~~a~~~A~~~AL~~~~iP 132 (132)
T PF01138_consen 81 LLERALRSSILLEGYPRWQIHVDVQVLSDDGGNLLDAAINAACLALLDAGIP 132 (132)
T ss_dssp HHHHHHHHTBSTTTTSSEEEEEEEEEEECSSSSHHHHHHHHHHHHHHHHTCS
T ss_pred HHhhhccccccccccCceEEEEEEEEEecCCCCHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999 99999999999999999998
No 20
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=99.95 E-value=1.9e-26 Score=222.18 Aligned_cols=199 Identities=17% Similarity=0.159 Sum_probs=166.1
Q ss_pred CCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecC--------------CCCCCCCchHH
Q 026141 15 RPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP--------------RTGQIGKPEKE 79 (243)
Q Consensus 15 R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p--------------~~~~~~~~~~~ 79 (243)
|++.+++|.+. +|+||+.+++|+|.|+|+|..-+. | .+..+...|.|+|.- +.|+++..|..
T Consensus 89 ~~~~~etG~~a~qA~gav~v~~g~t~vl~t~~~~~~--~-~~~~dF~PLtV~y~Ek~~AaGkipggf~kREgrp~d~eiL 165 (891)
T PLN00207 89 RHILVETGHIGRQASGSVTVTDGETIVYTSVCLADV--P-SEPSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVL 165 (891)
T ss_pred EEEEEEhhHHHHhCCCcEEEEECCeEEEEEEEeccC--C-CCCCCccceeEeeeeehhhcCccCCceeccCCCCChHHHH
Confidence 47899999886 599999999999999999986232 2 223456788998852 13445556789
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCC--hHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCH
Q 026141 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA--LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 157 (243)
Q Consensus 80 l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~--~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~ 157 (243)
++++|+|+|++++....|+..+| .++||++||+ ...+++|||++||+++||||+++++||++|++ +|.+|+|||.
T Consensus 166 ~sRlIdR~lRPlfp~~~~~etQI--~i~VLsaDg~~~pd~~AInAASaAL~~SgIP~~gpVaAVrVG~i-dg~~VlnPt~ 242 (891)
T PLN00207 166 ICRLIDRPLRPTMPKGFYHETQI--LSWVLSYDGLHSPDSLAVTAAGIAVALSEVPNLKAIAGVRVGLI-GGKFIVNPTT 242 (891)
T ss_pred HHHHHCccchhhccccCCCCcEE--EEEEEeeCCCCChhhHHHHHHHHHHHhhCCCccCceEEEEEEEE-CCEEEECCCH
Confidence 99999999999999988876555 5599999998 77999999999999999999999999999997 8999999999
Q ss_pred HHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026141 158 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 236 (243)
Q Consensus 158 ~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g-~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~ 236 (243)
.|++.++..++++...+ +++.+++.| .++.+++.++++.|.++++.+++++++.++++..
T Consensus 243 ~E~~~s~ldLvvagt~~-------------------~IvMIE~~a~e~see~l~~Al~~a~~aik~i~~~~~el~~~~gk 303 (891)
T PLN00207 243 KEMEESELDLIMAGTDS-------------------AILMIEGYCNFLPEEKLLEAVEVGQDAVRAICKEIEVLVKKCGK 303 (891)
T ss_pred HHHhcCCeeEEEEEcCC-------------------eEEEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999998887776543 233344455 5699999999999999999999999999988876
Q ss_pred cc
Q 026141 237 GD 238 (243)
Q Consensus 237 ~~ 238 (243)
..
T Consensus 304 ~k 305 (891)
T PLN00207 304 PK 305 (891)
T ss_pred CC
Confidence 53
No 21
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=99.88 E-value=5e-21 Score=181.45 Aligned_cols=210 Identities=16% Similarity=0.075 Sum_probs=166.0
Q ss_pred CCceEEeCCCC-CCCceEEEEe-CCeEEEEEEEcCccCCCCCCCCCceEEEEEec---------C-----CCCCCCCchH
Q 026141 15 RPLACSCSILH-RAHGSASWSQ-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---------P-----RTGQIGKPEK 78 (243)
Q Consensus 15 R~i~i~~~~l~-~a~GSa~v~~-G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~---------p-----~~~~~~~~~~ 78 (243)
|++.+++|.+. +||||+.+++ |+|.|+|++..-+. + .+.-+...|.|+|. | +.|+++..+.
T Consensus 17 ~~~~~etG~~A~qA~Gav~v~~~G~t~vl~t~~~~~~--~-~~~~dF~PLtV~y~Ek~yA~GkiPggf~kREgrps~~ei 93 (719)
T TIGR02696 17 RTIRFETGRLARQAAGSVVAYLDDETMLLSATTASKQ--P-KDQFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTDAI 93 (719)
T ss_pred EEEEEEcchhHhhCCceEEEEecCCeEEEEEEEecCC--C-CCCCCCcceeEeeeehhhhcCccCCceeccCCCCChhhh
Confidence 47999999997 5999999999 99999999985232 2 22345678899885 2 1344555678
Q ss_pred HHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCC--hHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCC
Q 026141 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA--LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156 (243)
Q Consensus 79 ~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~--~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt 156 (243)
..+|+|+|.|+|++.. +| +..+||.++||+.|+. .--.++||+++||.-++||+..++++|.+|.+ +|.+|++||
T Consensus 94 L~sRliDR~iRPLFp~-~~-~~e~qi~~~vls~D~~~~pdvla~~~ASaAl~iSdiPf~gPv~~vrVg~i-~g~~viNPt 170 (719)
T TIGR02696 94 LTCRLIDRPLRPSFVK-GL-RNEVQVVVTVLSLNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALI-DGQWVAFPT 170 (719)
T ss_pred HHHHhhCCCCccCCCC-CC-CcceEEEEEEEEcCCCCChHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE-CCEEEECcC
Confidence 9999999999999984 66 4789999999999984 57789999999999999999999999999997 999999999
Q ss_pred HHHHhhccccEEEEeeC----CccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 157 KLEEQKMKGFAYLVFPN----SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 157 ~~Ee~~~~~~~~v~~~~----~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
..|.+.++..++++.+. ++...|.++++....| .........++++++.++|+.|.+.++.+++++++..+
T Consensus 171 ~~~~~~s~ldLvvagt~~~~~~~~i~MiE~~a~~~~~-----~~~~~~a~e~~e~~~~~Ai~~a~~~i~~~~~~~~~l~~ 245 (719)
T TIGR02696 171 HEQLEGAVFDMVVAGRVLENGDVAIMMVEAEATEKTW-----DLVKGGAEAPTEEVVAEGLEAAKPFIKVLCRAQADLAE 245 (719)
T ss_pred HHHHhhCeeeEEEEeeecCCCCccEEEEecCCccccc-----cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 2245555532111000 00001123799999999999999999999999999665
Q ss_pred hhc
Q 026141 233 SKL 235 (243)
Q Consensus 233 ~~~ 235 (243)
+..
T Consensus 246 ~~g 248 (719)
T TIGR02696 246 KAA 248 (719)
T ss_pred HhC
Confidence 544
No 22
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=99.86 E-value=3.8e-21 Score=174.08 Aligned_cols=208 Identities=21% Similarity=0.312 Sum_probs=170.3
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEc--CccCCCCC--CCC---CceEEEEEecCCC----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYG--PKAGTKKN--ENP---EKASIEVIWKPRT---- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~g--p~~~~~~~--~~~---~~~~l~v~~~p~~---- 70 (243)
+|+|.|||..++.|+|.|+.+.++..+||+.|+-|+|+|+|+|+- ++.....+ ..+ -++.|++.|.|.+
T Consensus 356 ~gkR~DGR~ldelR~I~ce~~m~~~lHGSaLFqRGqTQvlctVtl~s~e~a~klD~l~~~~~~~~FmLhY~FPPyat~Ev 435 (760)
T KOG1067|consen 356 EGKRCDGRDLDELRNISCEVDMLKTLHGSALFQRGQTQVLCTVTLDSLESAQKLDSLIGPDNGINFMLHYEFPPYATNEV 435 (760)
T ss_pred cccccCCcchhhhcccceecCccccccchhhhhcCceeEEEEEEcCCHHHhhhhhhhccCccCceEEEEeccCCcccccc
Confidence 589999999999999999999999999999999999999999984 11111111 122 2567888888852
Q ss_pred ---CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026141 71 ---GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 ---~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+..+|+|.....+-+++|.+++. +.|| +.|+|.-.||+.||+.-.|++++-++||+|+|+|++..+++|++|+..
T Consensus 436 gkig~~nRRE~GhgaLAEkaL~~vlP-~dfP-ftIRv~SeVleSnGSsSMASvCGGslALmDaGvPv~a~vAGvaiGlvt 513 (760)
T KOG1067|consen 436 GKIGGLNRRELGHGALAEKALLPVLP-EDFP-FTIRVTSEVLESNGSSSMASVCGGSLALMDAGVPVSAHVAGVAIGLVT 513 (760)
T ss_pred ccccCCcccccCchhHhhhhhhccCc-ccCc-eEEEEeeeeeecCCcchHHhhhcchhhhhhcCCccccccceeEEEeEe
Confidence 33456777777888999999988 6787 899999999999999999999999999999999999999999999963
Q ss_pred C----------CeEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHH
Q 026141 148 S----------GYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGR 217 (243)
Q Consensus 148 ~----------~~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~ 217 (243)
+ -.++-|-.-.|....+-.+-|+.+++|+.+ . .++++..+++++.|.
T Consensus 514 ~td~e~g~i~dyriltDIlGiEd~~GDMDFKiAGt~dGvTA--------------------~---gi~l~Iv~eal~~a~ 570 (760)
T KOG1067|consen 514 KTDPEKGEIEDYRILTDILGIEDYNGDMDFKIAGTNDGVTA--------------------L---GIPLKIVMEALQKAR 570 (760)
T ss_pred ccCcccCCcccceeehhhcchhhhcCCcceeeccccCccee--------------------c---CCcHHHHHHHHHhhh
Confidence 2 157777778888777777777766654321 1 789999999999999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026141 218 AASAKLSDFLRRSLQSK 234 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~~ 234 (243)
.+-.+|.+.|.+.+...
T Consensus 571 ~ar~~Il~~m~k~i~~P 587 (760)
T KOG1067|consen 571 EARLQILDIMEKNINSP 587 (760)
T ss_pred HHHHHHHHHHHhhcCCc
Confidence 99999999999877543
No 23
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=4.5e-20 Score=171.68 Aligned_cols=222 Identities=19% Similarity=0.265 Sum_probs=185.4
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cC-ccCCC----CCCCCCceEEEEEecCCC-----
Q 026141 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GP-KAGTK----KNENPEKASIEVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp-~~~~~----~~~~~~~~~l~v~~~p~~----- 70 (243)
.++|+|||..++.||+.++.|++++.+||+.|..|.|+.++.++ |+ ....- ..+...++.+..||.|++
T Consensus 310 ~~vR~DGR~~~~VRpi~~ev~~lpr~HGS~LFtRGeTQal~v~TLG~~~d~Qvid~l~~e~~krfm~hYNFPp~SvGE~g 389 (692)
T COG1185 310 GKVRIDGRFGDEVRPIGIEVGVLPRTHGSALFTRGETQALVVVTLGTPRDAQVIDILEGEYKKRFLLHYNFPPFSVGETG 389 (692)
T ss_pred CCcccCCCCcceeeeeeEEecCCCCccchhhhccCCCcceEEEEcCCcchhhhhhhccchhhhheeeeccCCCCCccccC
Confidence 47899999999999999999999999999999999999999987 32 11111 113456778899999964
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhh-cCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026141 71 --GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.++|+|.-..++-+|++.+.+. .+.|| +.|++.-.|++.+|+--.|.+++.++||+++|+|++.+++++..|++.
T Consensus 390 ~~g~p~RREiGHG~LA~Ral~~vlp~~e~fp-ytiRvVsEi~eSNGSsSmaSVCg~sLaLmdAGVPIk~pVAGIAMGLI~ 468 (692)
T COG1185 390 RMGSPGRREIGHGALAERALAPVLPSEEEFP-YTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLIK 468 (692)
T ss_pred CCCCCCcccccCchhhHHHHhhhCCchhcCC-ceeeeeehhhcccCcccchhhhhhHHHHHhCCCcccccccchhcccee
Confidence 33567888888999999999988 45666 899999999999999999999999999999999999999999999986
Q ss_pred CC---eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 026141 148 SG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224 (243)
Q Consensus 148 ~~---~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~ 224 (243)
++ .++-|-...|....+-.+-|+.+.+|+.+++.. ..-..++.+.+.+++..|..+..++.
T Consensus 469 eg~~~~vLsDI~G~EDhlGDMDFKVAGT~~GiTAlQMD----------------iKi~Git~eim~~AL~QAk~aRlhIL 532 (692)
T COG1185 469 EGDKYAVLSDILGDEDHLGDMDFKVAGTDDGITALQMD----------------IKIKGITKEIMKKALEQAKGARLHIL 532 (692)
T ss_pred cCCceEeeccccccccccCCceeEEecCCCcceeeeee----------------eeecCCCHHHHHHHHHHHHHHHHHHH
Confidence 54 578888888888888888888877777666542 12357999999999999999999999
Q ss_pred HHHHHHHHhhcccccc
Q 026141 225 DFLRRSLQSKLPGDLS 240 (243)
Q Consensus 225 ~~i~~~l~~~~~~~~~ 240 (243)
..|.+++.+...+--.
T Consensus 533 ~~M~~ai~~pr~els~ 548 (692)
T COG1185 533 IVMNEAISEPRKELSP 548 (692)
T ss_pred HHHHHHHhhhhhhhhc
Confidence 9999999887544433
No 24
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=9.9e-18 Score=156.15 Aligned_cols=197 Identities=20% Similarity=0.172 Sum_probs=164.2
Q ss_pred CCCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEec---------C-----CCCCCCCchH
Q 026141 14 LRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---------P-----RTGQIGKPEK 78 (243)
Q Consensus 14 ~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~---------p-----~~~~~~~~~~ 78 (243)
-|++.+++|.+. +|+|++.+++|+|.|++++.+.. + .+.-|.+.|.|+|. | +.|+|...+.
T Consensus 13 ~~~l~~etg~~A~qa~gav~~~~gdt~vl~t~~~~~---~-~~~~dF~PLtV~y~Ek~yaaGkiPGgf~kREGrpse~e~ 88 (692)
T COG1185 13 GRTLTLETGKIARQANGAVLVRYGDTVVLATVVASK---P-KEGQDFFPLTVNYEEKTYAAGKIPGGFFKREGRPSEKEI 88 (692)
T ss_pred CeeEEEEcchhhhhcCccEEEEECCeEEEEEEeecC---C-CCCCCccceeEeeeeehhccCcCCCcccccCCCCCccch
Confidence 388999999997 59999999999999999999733 2 33457788888874 3 2355556678
Q ss_pred HHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCC--hHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCC
Q 026141 79 EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA--LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156 (243)
Q Consensus 79 ~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~--~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt 156 (243)
..+|+|+|.+++++.. +| +..++|..+|++.|+. ..-.+++++++||.-++||+..+++++++|++ +|.++++||
T Consensus 89 L~sRLIDRpiRPlFp~-g~-~~evqIv~tvls~D~~~~pdi~a~~gaSaAl~is~iPf~gpi~~vrvg~i-dg~~vlNPt 165 (692)
T COG1185 89 LTSRLIDRPIRPLFPK-GF-RNEVQIVNTVLSVDPENDPDILAMVGASAALSLSGIPFLGPIGAVRVGYI-DGIFVLNPT 165 (692)
T ss_pred hhhhhcccccccccch-hh-ccceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCccCccceEEEEEE-CCEEEECCC
Confidence 9999999999999885 55 4789999999999986 46788999999999999999999999999997 999999999
Q ss_pred HHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026141 157 KLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235 (243)
Q Consensus 157 ~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~ 235 (243)
.+|.+.++..++++.+.+. ..|.++ ..-.++.+.+.+++..+.+..+.+++++++......
T Consensus 166 ~~e~~~s~lDlvVAGT~~a-V~MVE~-----------------~a~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~~~g 226 (692)
T COG1185 166 LEELEESKLDLVVAGTKDA-VNMVES-----------------EADELDEEVMLEAVEFGHEAIQSVINAQEELALEVG 226 (692)
T ss_pred hHHhhhcceeeEecCChhh-hheeec-----------------ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998888866542 222221 123788999999999999999999999999877655
No 25
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=99.73 E-value=4.9e-17 Score=147.64 Aligned_cols=199 Identities=21% Similarity=0.203 Sum_probs=161.0
Q ss_pred CCCCceEEeCCCCC-CCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEec---------C-----CCCCCCCch
Q 026141 13 QLRPLACSCSILHR-AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---------P-----RTGQIGKPE 77 (243)
Q Consensus 13 e~R~i~i~~~~l~~-a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~---------p-----~~~~~~~~~ 77 (243)
-.|.+.+++|.+.+ |+||+.++.|+|.|+++|.. -.+|++ |+...|.|+|. | +.+.+..+|
T Consensus 54 GnR~i~~etGklaRfAngsvvv~~GeT~Vm~Tv~~--a~~PSp--~qFlPL~VdYqeK~aAvGRip~~fmRREg~tkdkE 129 (760)
T KOG1067|consen 54 GNREILFETGKLARFANGSVVVQMGETAVMTTVVL--ADKPSP--PQFLPLVVDYQEKFAAVGRIPGNFMRREGRTKDKE 129 (760)
T ss_pred CCeEEEEecchhhhhcCCcEEEccCCeEEEEEEEe--cCCCCc--cccceEEEehhhhhhhhccCCCcccccccCCcchh
Confidence 46999999999986 99999999999999999986 233432 44567888874 2 123334456
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCC--hHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCC
Q 026141 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA--LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~--~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDP 155 (243)
....++|+|.+++++.. +| .+..++-..+|..||- .-..++|++++||.-+.+|+...+.++.+|++ +|.++|+|
T Consensus 130 iL~~rLidrsirplfp~-g~-~~etqi~~n~Ls~dG~~~pdvlainaas~Al~lsdvpw~gpig~vRigLi-~Ge~vVNP 206 (760)
T KOG1067|consen 130 ILTGRLIDRPIRPLFPK-GF-YHETQILCNVLSSDGVHDPDVLAINAASAALSLSDVPWNGPIGAVRIGLI-DGEFVVNP 206 (760)
T ss_pred heeeeccccccccCCcc-cc-hhHHHHHhhheecccccCchHHHHhHHHHHhhhccCCCCCceeeeEeeee-cceEEeCc
Confidence 67789999999999875 44 3677788888999984 56778999999999999999999999999997 99999999
Q ss_pred CHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026141 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 156 t~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g-~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~ 234 (243)
|.+|.+.++..++++...+ . +++++..+ .+..++|.++++.+.+.++++..-|.+..++.
T Consensus 207 T~kEmssS~Lnlvvagt~~-~------------------~vmle~~s~~i~qqdl~~Aikvg~~~~q~~i~~i~~L~k~~ 267 (760)
T KOG1067|consen 207 TRKEMSSSQLNLVVAGTKS-Q------------------TVMLEGSSNNILQQDLLHAIKVGVKEAQQIIQGIERLAKKY 267 (760)
T ss_pred chhhhhhccceeEEEeccc-e------------------EEEEEcccccccHHHHHHHHHhccHHHHHHHHHHHHHHHHh
Confidence 9999999999888886632 2 33444444 78999999999999999999999999988876
Q ss_pred ccc
Q 026141 235 LPG 237 (243)
Q Consensus 235 ~~~ 237 (243)
...
T Consensus 268 Gk~ 270 (760)
T KOG1067|consen 268 GKQ 270 (760)
T ss_pred Ccc
Confidence 554
No 26
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=99.22 E-value=3.4e-11 Score=82.55 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=53.4
Q ss_pred CceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCC-CCHHHHHHHH
Q 026141 136 HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGA-MSVDDYFHCL 213 (243)
Q Consensus 136 ~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~-~~~~~l~~~l 213 (243)
|+|+++|++++ ++.+|+|||.+||..+++.++++++.++ .|.+++. +.+. ++++++.+|+
T Consensus 1 ~~~~avt~~~i-~~~~v~Dpt~~Ee~~~~~~l~~~~~~~~~~~~~~~~-----------------~g~~~~~~~~l~~~i 62 (68)
T PF03725_consen 1 DPPVAVTVGII-DGELVVDPTAEEESLSDSSLTLAVDGTGNICTLQKS-----------------GGGSELSEDQLEEAI 62 (68)
T ss_dssp SEEEEEEEEEE-TTEEEES--HHHHHHSSEEEEEEEETTSSEEEEEEE-----------------EESSEEEHHHHHHHH
T ss_pred CCeEEEEEEEE-CCEEEECCCHHHHhhcCCcEEEEEECCCCEEEEEEc-----------------CCCCCCCHHHHHHHH
Confidence 57999999998 8899999999999999999999998765 4455442 2333 9999999999
Q ss_pred HHHHHH
Q 026141 214 ERGRAA 219 (243)
Q Consensus 214 ~~a~~~ 219 (243)
++|.++
T Consensus 63 ~~A~~~ 68 (68)
T PF03725_consen 63 ELAKKA 68 (68)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999874
No 27
>PF03764 EFG_IV: Elongation factor G, domain IV; InterPro: IPR005517 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. EF2 has five domains. This entry represents domain IV found in EF2 (or EF-G) of both prokaryotes and eukaryotes. The EF2-GTP-ribosome complex undergoes extensive structural rearrangement for tRNA-mRNA movement to occur. Domain IV, which extends from the 'body' of the EF2 molecule much like a lever arm, appears to be essential for the structural transition to take place. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3J0E_H 1FNM_A 3IZP_E 2OM7_L 1KTV_A 2J7K_A 2BM1_A 2BM0_A 2BV3_A 1ZM3_E ....
Probab=42.98 E-value=1.2e+02 Score=22.32 Aligned_cols=55 Identities=29% Similarity=0.242 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHhhhh---cCCCCceEEEEEEEEEeCC------CChHHHHHHHHHHHHHHcC
Q 026141 77 EKEYEIILKRTLQSICI---LTINPNTTTSVIIQVVHDD------GALLPCAINAACAALVDAG 131 (243)
Q Consensus 77 ~~~l~~~l~~~l~~~~~---~~~~~~~~i~i~v~vl~~d------G~~~~a~~~a~~~AL~~a~ 131 (243)
..++...|.+.++..+. +-+||...+.|.++=.+.. +....|+-.|...||..|+
T Consensus 57 ~~~~~~ai~~G~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~s~~~a~~~aa~~a~~~al~~A~ 120 (120)
T PF03764_consen 57 PKEFQDAIEEGFQSALSSGPLCGYPVTDVKVTLTDGEYHEVDSSPGAFRAAARRAFREALKKAG 120 (120)
T ss_dssp GGGGHHHHHHHHHHHHCSSTTTSSEB-SEEEEEEEEEC-TTTBSHHHHHHHHHHHHHHHHHHS-
T ss_pred cHHHHHHHhhhhhheecccccCCCceEEEEEEEEEeeecCCcCCHHHHHHHHHHHHHHHHHhcC
Confidence 35667777777777663 4579988888888766643 2367778888888888764
No 28
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=30.42 E-value=65 Score=20.31 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=26.4
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026141 201 HGAMSVDDYFHCLERGRAASAKLSDFLRRS 230 (243)
Q Consensus 201 ~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~ 230 (243)
+|.++..++.+++..+.+.+..+.+.++..
T Consensus 8 ~~~itv~~~rd~lg~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLLGLSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHHTS-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHHCccHHHHHHHHHHHhcc
Confidence 679999999999999999999999998763
No 29
>cd01434 EFG_mtEFG1_IV EFG_mtEFG1_IV: domains similar to domain IV of the bacterial translational elongation factor (EF) EF-G. Included in this group is a domain of mitochondrial Elongation factor G1 (mtEFG1) proteins homologous to domain IV of EF-G. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provi
Probab=28.00 E-value=2.4e+02 Score=20.53 Aligned_cols=53 Identities=21% Similarity=0.098 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhhhh---cCCCCceEEEEEEEEEe---CCCC---hHHHHHHHHHHHHHHc
Q 026141 78 KEYEIILKRTLQSICI---LTINPNTTTSVIIQVVH---DDGA---LLPCAINAACAALVDA 130 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~---~~~~~~~~i~i~v~vl~---~dG~---~~~a~~~a~~~AL~~a 130 (243)
.++...|.+.++..+. +.+||...+.|.++-.. .|.+ ...|+.+|..-||..+
T Consensus 54 ~~~~~ai~~g~~~a~~~Gpl~G~pv~~v~V~l~~~~~~~~~s~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01434 54 KEYIPAVEKGFREALEKGPLAGYPVVDVKVTLYDGSYHDVDSSEMAFKIAARMAFKEAFKKA 115 (116)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCccccEEEEEEeceeecCCCCHHHHHHHHHHHHHHHHHhc
Confidence 5566666666666653 45888888888776322 2333 2344444555555444
No 30
>PF15645 Tox-PLDMTX: Dermonecrotoxin of the Papain-like fold
Probab=27.07 E-value=69 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.311 Sum_probs=23.1
Q ss_pred HcCCCCCCceeEEEEEEecCCeEEeCCCHHHHhhcc
Q 026141 129 DAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMK 164 (243)
Q Consensus 129 ~a~ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~ 164 (243)
....|++|.++ .+.+.+-.+++|||...-....
T Consensus 38 ~~~~p~NH~vv---~~k~~g~eyV~D~Ta~QF~~~~ 70 (135)
T PF15645_consen 38 NDDSPTNHFVV---VAKKNGKEYVFDPTAHQFSNKG 70 (135)
T ss_pred CccCCcceEEE---EEEECCEEEEEeCcHHHhhccC
Confidence 34567888765 3455566899999998776544
No 31
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=23.88 E-value=62 Score=18.59 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026141 203 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235 (243)
Q Consensus 203 ~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~ 235 (243)
.++.+.+...=++|.+......+++++++.+..
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai~~~l 37 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAIREYL 37 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467777888888888888888888888887754
No 32
>cd01680 EFG_like_IV Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily conserved U5 snRNP-specific protein (U5-116kD). In complex with GTP, EF-G/EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site of the small subunit of ribosome and the mRNA is shifted one codon relative to the ribosome. It has been shown that EF-G/EF-2_IV domain mimics the shape of anticodon arm of the tRNA in the structurally homologous ternary complex of Petra, EF-Tu (another transcriptional elongation factor) and GTP analog. The tip portion of this domain is found in a position that overlaps the anticodon arm of the A-site tRNA, implying that EF-G/EF-2 displaces the A-site tRNA to the P-site by physical interaction with the anticodon arm.
Probab=23.05 E-value=2.9e+02 Score=19.84 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhhhh---cCCCCceEEEEEEEEEeCCC------ChHHHHHHHHHHHHHHc
Q 026141 78 KEYEIILKRTLQSICI---LTINPNTTTSVIIQVVHDDG------ALLPCAINAACAALVDA 130 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~---~~~~~~~~i~i~v~vl~~dG------~~~~a~~~a~~~AL~~a 130 (243)
.++...|.+.++..+. +.++|...+.|.++-...+. .+..|+-.|...||.++
T Consensus 54 ~~~~~ai~~g~~~a~~~Gpl~g~pv~~v~v~l~~~~~~~~~~~~~~~~~aa~~a~~~al~~a 115 (116)
T cd01680 54 AELKEAVEEGIRDACASGPLTGYPLTDVRVTVLDVPYHEGVSTEAGFRAAAGRAFESAAQKA 115 (116)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4555566666665542 45888888888877554322 23455555555555554
No 33
>cd01684 Tet_like_IV EF-G_domain IV_RPP domain is a part of bacterial ribosomal protected proteins (RPP) family. RPPs such as tetracycline resistance proteins Tet(M) and Tet(O) mediate tetracycline resistance in both gram-positive and -negative species. Tetracyclines inhibit the accommodation of aminoacyl-tRNA into ribosomal A site and therefore prevent the addition of new amino acids to the growing polypeptide. RPPs Tet(M) confer tetracycline resistance by releasing tetracycline from the ribosome and thereby freeing the ribosome from inhibitory effects of the drug, such that aa-tRNA can bind to the A site and protein synthesis can continue.
Probab=23.04 E-value=3.1e+02 Score=20.08 Aligned_cols=33 Identities=9% Similarity=0.091 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhhh---hcCCCCceEEEEEEEEEe
Q 026141 77 EKEYEIILKRTLQSIC---ILTINPNTTTSVIIQVVH 110 (243)
Q Consensus 77 ~~~l~~~l~~~l~~~~---~~~~~~~~~i~i~v~vl~ 110 (243)
..++-..|++.++..| .+ +||...+.|.++-..
T Consensus 53 p~~~~~aie~g~~~al~~G~l-G~pv~dv~V~l~~~~ 88 (115)
T cd01684 53 PRSFQNAVEETVRETLQQGLY-GWEVTDCKVTLTYGR 88 (115)
T ss_pred CHHHHHHHHHHHHHHHhcCCC-CCCEeeEEEEEEEee
Confidence 3566667777777766 35 898777777666443
No 34
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=21.44 E-value=3.7e+02 Score=20.42 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=45.1
Q ss_pred EEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHhhhhcC-CCCceEEEEEEEEEe
Q 026141 32 SWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVH 110 (243)
Q Consensus 32 ~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~i~i~v~vl~ 110 (243)
.|..|+.++-+.-.. .-.-.+..++.+.+.++++=..|++....+.++..|-.+++..+.-. ..+...+.+++.-++
T Consensus 34 lF~~~~IK~Ra~~~~--~y~vgdg~~~~~Fihv~l~i~~GRs~e~k~~l~~~l~~~l~~~~~~~~~~~~~~LS~Ei~d~d 111 (126)
T PRK15031 34 IFPLGGIRSRAHWLD--TWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFALIKAHFAALMESRYLALSFEIEELH 111 (126)
T ss_pred CCCccccEeeeeecC--cEEEcCCCCCCcEEEEEeeecCCCCHHHHHHHHHHHHHHHHHHhhhhhcccceEEEEEEEEcC
Confidence 445555555543221 11112345667888887765445544444677777766666655432 222256666666666
Q ss_pred CCCChH
Q 026141 111 DDGALL 116 (243)
Q Consensus 111 ~dG~~~ 116 (243)
..++..
T Consensus 112 ~~~s~k 117 (126)
T PRK15031 112 PTLNFK 117 (126)
T ss_pred CccChh
Confidence 666544
No 35
>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants. They have been implicated in modulating the nuclear membrane envelope potential [].
Probab=20.68 E-value=3.6e+02 Score=22.14 Aligned_cols=35 Identities=11% Similarity=0.194 Sum_probs=25.9
Q ss_pred CCceeEEEEEEecCCeEEeCCCHHHHhhccccEEE
Q 026141 135 KHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYL 169 (243)
Q Consensus 135 ~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v 169 (243)
+.+|-|+-+|++.+|.+++.|+..|.-...-.+.+
T Consensus 112 ~~Fpdav~CGv~r~GkI~fhP~Dd~vL~e~DklLv 146 (206)
T PF06241_consen 112 RSFPDAVVCGVKRDGKIVFHPDDDYVLREGDKLLV 146 (206)
T ss_pred hcCCcceeeeeeeCCeeEECCCCCceeecCCEEEE
Confidence 45677888899989999999999887544333333
Done!