Your job contains 1 sequence.
>026142
MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA
SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI
NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP
EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS
KAE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026142
(243 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2075351 - symbol:AT3G46210 "AT3G46210" species... 1020 6.0e-103 1
UNIPROTKB|Q84T68 - symbol:RRP46 "Exosome complex exonucle... 831 6.4e-83 1
UNIPROTKB|Q9NQT4 - symbol:EXOSC5 "Exosome complex compone... 337 3.9e-35 2
UNIPROTKB|E1BAG2 - symbol:EXOSC5 "Uncharacterized protein... 330 2.7e-34 2
RGD|1307861 - symbol:Exosc5 "exosome component 5" species... 328 3.4e-34 2
MGI|MGI:107889 - symbol:Exosc5 "exosome component 5" spec... 327 4.4e-34 2
ZFIN|ZDB-GENE-060503-675 - symbol:exosc5 "exosome compone... 313 2.1e-32 2
TAIR|locus:2060111 - symbol:AT2G07110 "AT2G07110" species... 163 1.4e-22 2
TAIR|locus:2076710 - symbol:RRP41 "AT3G61620" species:370... 222 2.2e-18 1
FB|FBgn0032487 - symbol:Ski6 "Ski6" species:7227 "Drosoph... 212 2.5e-17 1
MGI|MGI:1923576 - symbol:Exosc4 "exosome component 4" spe... 212 2.5e-17 1
UNIPROTKB|Q9NPD3 - symbol:EXOSC4 "Exosome complex compone... 207 8.6e-17 1
RGD|1310986 - symbol:Exosc4 "exosome component 4" species... 207 8.6e-17 1
UNIPROTKB|Q7YRA3 - symbol:EXOSC4 "Exosome complex compone... 206 1.1e-16 1
WB|WBGene00007201 - symbol:exos-4.1 species:6239 "Caenorh... 202 2.9e-16 1
UNIPROTKB|Q17533 - symbol:exos-4.1 "Putative exosome comp... 202 2.9e-16 1
FB|FBgn0037815 - symbol:Rrp46 "Rrp46" species:7227 "Droso... 201 3.7e-16 1
UNIPROTKB|E2RIM3 - symbol:EXOSC4 "Uncharacterized protein... 201 3.7e-16 1
UNIPROTKB|F1RSL0 - symbol:EXOSC4 "Uncharacterized protein... 201 3.7e-16 1
ZFIN|ZDB-GENE-040426-1702 - symbol:exosc4 "exosome compon... 190 5.4e-15 1
POMBASE|SPBC115.01c - symbol:rrp46 "exosome subunit Rrp46... 186 1.4e-14 1
UNIPROTKB|Q28F19 - symbol:exosc6 "Exosome complex compone... 181 4.9e-14 1
TAIR|locus:2124024 - symbol:RRP41L "AT4G27490" species:37... 181 4.9e-14 1
WB|WBGene00000798 - symbol:crn-5 species:6239 "Caenorhabd... 178 1.0e-13 1
POMBASE|SPAC3G9.10c - symbol:rrp41 "exosomal 3'-to-5' pho... 175 2.1e-13 1
CGD|CAL0002905 - symbol:orf19.4582 species:5476 "Candida ... 173 4.1e-13 1
ZFIN|ZDB-GENE-050522-362 - symbol:exosc6 "exosome compone... 174 2.0e-12 1
SGD|S000003327 - symbol:RRP46 "Exosome non-catalytic core... 164 3.1e-12 1
UNIPROTKB|F1RH84 - symbol:EXOSC5 "Uncharacterized protein... 125 5.1e-12 2
UNIPROTKB|Q5RKV6 - symbol:EXOSC6 "Exosome complex compone... 122 1.2e-11 2
MGI|MGI:1919794 - symbol:Exosc6 "exosome component 6" spe... 116 7.2e-11 2
RGD|1309832 - symbol:Exosc6 "exosome component 6" species... 117 8.6e-11 2
UNIPROTKB|Q95Z09 - symbol:RRP41B "Rrp41p homologue" speci... 161 1.7e-10 1
ASPGD|ASPL0000013004 - symbol:AN3812 species:162425 "Emer... 159 4.1e-10 1
SGD|S000003427 - symbol:SKI6 "Exosome non-catalytic core ... 154 1.3e-09 1
FB|FBgn0036916 - symbol:Mtr3 "Mtr3" species:7227 "Drosoph... 145 5.7e-08 1
TAIR|locus:2079429 - symbol:RIF10 "AT3G03710" species:370... 151 6.0e-08 1
UNIPROTKB|Q95Z13 - symbol:RRP41A "Rrp41p homologue" speci... 141 7.7e-08 1
UNIPROTKB|G4MRK3 - symbol:MGG_16298 "Uncharacterized prot... 139 1.6e-07 1
UNIPROTKB|F1S435 - symbol:EXOSC6 "Uncharacterized protein... 91 3.5e-07 2
UNIPROTKB|G4MM07 - symbol:MGG_06785 "Exosome complex exon... 129 3.4e-06 1
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 131 1.5e-05 1
UNIPROTKB|Q8IEW0 - symbol:EAP4 "Exosome-associated protei... 117 5.1e-05 1
GENEDB_PFALCIPARUM|PFB0415c - symbol:PFB0415c "hypothetic... 118 6.6e-05 1
UNIPROTKB|O96177 - symbol:PFB0415c "3' exoribonuclease, p... 118 6.6e-05 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 123 8.4e-05 1
GENEDB_PFALCIPARUM|PF14_0256 - symbol:PF14_0256 "exosome ... 116 8.4e-05 1
UNIPROTKB|Q8ILI7 - symbol:PF14_0256 "Exosome complex exon... 116 8.4e-05 1
TIGR_CMR|SO_1209 - symbol:SO_1209 "polyribonucleotide nuc... 121 0.00014 1
UNIPROTKB|P05055 - symbol:pnp "polynucleotide phosphoryla... 120 0.00019 1
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 117 0.00041 1
TIGR_CMR|DET_0970 - symbol:DET_0970 "polyribonucleotide n... 116 0.00054 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 115 0.00068 1
UNIPROTKB|Q9KU76 - symbol:pnp "Polyribonucleotide nucleot... 115 0.00069 1
TIGR_CMR|VC_0647 - symbol:VC_0647 "polyribonucleotide nuc... 115 0.00069 1
TIGR_CMR|GSU_1795 - symbol:GSU_1795 "ribonuclease PH" spe... 107 0.00091 1
>TAIR|locus:2075351 [details] [associations]
symbol:AT3G46210 "AT3G46210" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
[GO:0051604 "protein maturation" evidence=RCA] InterPro:IPR001247
Pfam:PF01138 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 KO:K12590 OMA:VRETCEA ProtClustDB:CLSN2684812
EMBL:AL355775 EMBL:BT003125 EMBL:AK228171 EMBL:AK317261
EMBL:AK317537 IPI:IPI00521571 PIR:T49262 RefSeq:NP_001030817.1
RefSeq:NP_001030818.1 RefSeq:NP_001030819.1 RefSeq:NP_001078250.1
RefSeq:NP_001190019.1 RefSeq:NP_190207.1 UniGene:At.43331
ProteinModelPortal:Q9LX74 SMR:Q9LX74 IntAct:Q9LX74 STRING:Q9LX74
PaxDb:Q9LX74 PRIDE:Q9LX74 EnsemblPlants:AT3G46210.1
EnsemblPlants:AT3G46210.2 EnsemblPlants:AT3G46210.3
EnsemblPlants:AT3G46210.4 EnsemblPlants:AT3G46210.5
EnsemblPlants:AT3G46210.6 GeneID:823766 KEGG:ath:AT3G46210
TAIR:At3g46210 InParanoid:Q9LX74 PhylomeDB:Q9LX74
Genevestigator:Q9LX74 Uniprot:Q9LX74
Length = 239
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 189/232 (81%), Positives = 210/232 (90%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME+DR DGR PNQLRPLACS +ILHR HGSASWSQGDTKVLAAVYGPKAGTKKNEN EKA
Sbjct: 1 MEIDREDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
EVIWKP++GQIGK EKEYE+ILKRT+QSIC+LT+NPNTTTSVIIQVVHDDG+LLPCAI
Sbjct: 61 CFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NAACAALVDAGIPMKHLAVAICCC AE+GY +LDP KLEE+KM FAYLVFPN+ LSVLP
Sbjct: 121 NAACAALVDAGIPMKHLAVAICCCLAENGYLVLDPNKLEEKKMTAFAYLVFPNTTLSVLP 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232
EGSS+ +GEP+EHGIITS+THG MSVDDYF C+E GRAA+A LS F R++ Q
Sbjct: 181 EGSSVAEGEPVEHGIITSITHGVMSVDDYFLCVENGRAATASLSAFFRKNFQ 232
>UNIPROTKB|Q84T68 [details] [associations]
symbol:RRP46 "Exosome complex exonuclease RRP46 homolog"
species:39947 "Oryza sativa Japonica Group" [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0004536
"deoxyribonuclease activity" evidence=IDA] [GO:0004540
"ribonuclease activity" evidence=IDA] [GO:0042802 "identical
protein binding" evidence=IPI] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005730 GO:GO:0003727
EMBL:DP000009 EMBL:AP008209 GO:GO:0003690 GO:GO:0004527
GO:GO:0000178 GO:GO:0004540 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0004536 GO:GO:0006364 eggNOG:COG0689 SUPFAM:SSF55666
KO:K12590 EMBL:AC120506 EMBL:AK069107 RefSeq:NP_001051936.1
UniGene:Os.47503 PDB:3HKM PDBsum:3HKM ProteinModelPortal:Q84T68
STRING:Q84T68 EnsemblPlants:LOC_Os03g63720.1 GeneID:4334824
KEGG:dosa:Os03t0854200-01 KEGG:osa:4334824 Gramene:Q84T68
OMA:EKACIEV ProtClustDB:CLSN2684812 EvolutionaryTrace:Q84T68
Uniprot:Q84T68
Length = 238
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 161/239 (67%), Positives = 192/239 (80%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKA 60
ME RADGRNPNQLRP +C+ + L RAHGSA W+QGDT VLAAVYGPK GT+K ENPEKA
Sbjct: 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKA 60
Query: 61 SIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
SIEV+WKP TGQIGK EKEYE+ LKRTLQSIC+LT++PNTTTSVI+QVV +DG+LLPCAI
Sbjct: 61 SIEVVWKPMTGQIGKQEKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAI 120
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLP 180
NA CAALV AGIP+KHLAVAI C E G ILD K EEQ++K FA+LVFPNS S
Sbjct: 121 NACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEEQQLKSFAHLVFPNSRKSASS 180
Query: 181 EGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239
+ + + E E G+ITS+THG MS +DYF C+ERG AAS+++SDF+R +LQ + PGD+
Sbjct: 181 KEPNQKE-EDSERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDV 238
>UNIPROTKB|Q9NQT4 [details] [associations]
symbol:EXOSC5 "Exosome complex component RRP46"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=NAS]
[GO:0006364 "rRNA processing" evidence=NAS] [GO:0005737 "cytoplasm"
evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS] [GO:0000178
"exosome (RNase complex)" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=IMP;TAS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0005730 GO:GO:0051607
GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 EMBL:AC011462 GO:GO:0006364 GO:GO:0000175
GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 EMBL:AF281134
EMBL:AF285785 EMBL:BC007742 EMBL:BC107696 IPI:IPI00644775
RefSeq:NP_064543.3 UniGene:Hs.283741 ProteinModelPortal:Q9NQT4
SMR:Q9NQT4 DIP:DIP-29846N IntAct:Q9NQT4 MINT:MINT-1479651
STRING:Q9NQT4 PhosphoSite:Q9NQT4 DMDM:14285757 PaxDb:Q9NQT4
PRIDE:Q9NQT4 DNASU:56915 Ensembl:ENST00000221233 GeneID:56915
KEGG:hsa:56915 UCSC:uc002oqo.3 CTD:56915 GeneCards:GC19M041892
HGNC:HGNC:24662 MIM:606492 neXtProt:NX_Q9NQT4 PharmGKB:PA134890468
HOVERGEN:HBG051520 InParanoid:Q9NQT4 KO:K12590 OMA:VRETCEA
OrthoDB:EOG4PZJ7M PhylomeDB:Q9NQT4 EvolutionaryTrace:Q9NQT4
GenomeRNAi:56915 NextBio:62403 Bgee:Q9NQT4 CleanEx:HS_EXOSC5
Genevestigator:Q9NQT4 GermOnline:ENSG00000077348 Uniprot:Q9NQT4
Length = 235
Score = 337 (123.7 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 71/164 (43%), Positives = 101/164 (61%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + T++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEAR--AVLTF 183
Score = 59 (25.8 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 189 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 186 DSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR 231
>UNIPROTKB|E1BAG2 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0051607 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666 OMA:VRETCEA
GeneTree:ENSGT00550000075002 EMBL:DAAA02047109 IPI:IPI00710844
Ensembl:ENSBTAT00000021338 Uniprot:E1BAG2
Length = 235
Score = 330 (121.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 69/158 (43%), Positives = 99/158 (62%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +P+TG
Sbjct: 28 LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKISKEIFNKATLEVILRPKTGLP 87
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC ALVDAG+P
Sbjct: 88 GVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
M+ L + C G +LDPT +E++ + A L F
Sbjct: 148 MRALFCGVTCALDSDGTLMLDPTAKQEKEAR--AVLTF 183
Score = 58 (25.5 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 189 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 186 DSVERKLLMSTTKGLYSDTELQQCLAAAQTASTHVFRFYRESLQRR 231
>RGD|1307861 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0006401 "RNA catabolic process" evidence=ISO] [GO:0035327
"transcriptionally active chromatin" evidence=IEA;ISO] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA;ISO] [GO:0045006
"DNA deamination" evidence=IEA;ISO] [GO:0051607 "defense response
to virus" evidence=IEA;ISO] [GO:0004532 "exoribonuclease activity"
evidence=ISO] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
RGD:1307861 GO:GO:0051607 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0043928 GO:GO:0045006
Pfam:PF03725 SUPFAM:SSF55666 CTD:56915 KO:K12590 OMA:VRETCEA
GeneTree:ENSGT00550000075002 IPI:IPI00201730 RefSeq:NP_001100963.2
UniGene:Rn.7400 Ensembl:ENSRNOT00000028026 GeneID:308441
KEGG:rno:308441 UCSC:RGD:1307861 NextBio:658885 ArrayExpress:F1LSX7
Uniprot:F1LSX7
Length = 235
Score = 328 (120.5 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 70/164 (42%), Positives = 101/164 (61%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R+P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLIRNTCEAVVLGALHPRTSITVVLQVVSDTGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDPDGNLVLDPTTKQEKEAR--AILTF 183
Score = 59 (25.8 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 189 EQKLLMSATKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRR 231
>MGI|MGI:107889 [details] [associations]
symbol:Exosc5 "exosome component 5" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006401 "RNA catabolic process" evidence=IMP]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0043928 "exonucleolytic nuclear-transcribed mRNA catabolic
process involved in deadenylation-dependent decay" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:107889 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0051607 GO:GO:0003723 GO:GO:0006401
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0006364 GO:GO:0043928 GO:GO:0045006 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 CTD:56915
HOVERGEN:HBG051520 KO:K12590 OMA:VRETCEA OrthoDB:EOG4PZJ7M
EMBL:AK007372 EMBL:AK006475 EMBL:BC034358 IPI:IPI00133532
RefSeq:NP_613052.1 UniGene:Mm.207484 UniGene:Mm.27853
ProteinModelPortal:Q9CRA8 SMR:Q9CRA8 IntAct:Q9CRA8 STRING:Q9CRA8
PhosphoSite:Q9CRA8 PaxDb:Q9CRA8 PRIDE:Q9CRA8
Ensembl:ENSMUST00000079634 GeneID:27998 KEGG:mmu:27998
UCSC:uc009fti.2 GeneTree:ENSGT00550000075002 InParanoid:Q9CRA8
NextBio:306496 Bgee:Q9CRA8 CleanEx:MM_EXOSC5 Genevestigator:Q9CRA8
GermOnline:ENSMUSG00000061286 Uniprot:Q9CRA8
Length = 235
Score = 327 (120.2 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 70/164 (42%), Positives = 101/164 (61%)
Query: 9 RNPN-QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK 67
R+P LR AC ++L R GSAS+ QGDT VLA VYGP E KA++EVI +
Sbjct: 22 RSPVCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILR 81
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G EK E +++ T +++ + ++P T+ +V++QVV D G+LL C +NAAC AL
Sbjct: 82 PKIGLPGVAEKSRERLVRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMAL 141
Query: 128 VDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
VDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 142 VDAGVPMRALFCGVTCALDSDGNLVLDPTTKQEKEAR--AILTF 183
Score = 59 (25.8 bits), Expect = 4.4e-34, Sum P(2) = 4.4e-34
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
E ++ S T G S + CL +AAS + F R SLQ +
Sbjct: 189 EQKLLMSTTKGLYSDAELQQCLAAAQAASQHIFRFYRESLQRR 231
>ZFIN|ZDB-GENE-060503-675 [details] [associations]
symbol:exosc5 "exosome component 5" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-060503-675 InterPro:IPR020568 SUPFAM:SSF54211
Pfam:PF03725 SUPFAM:SSF55666 GeneTree:ENSGT00550000075002
EMBL:BX649594 IPI:IPI00483802 Ensembl:ENSDART00000125931
ArrayExpress:F1REL3 Bgee:F1REL3 Uniprot:F1REL3
Length = 243
Score = 313 (115.2 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 66/177 (37%), Positives = 106/177 (59%)
Query: 14 LRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQI 73
LR S+L R GS+++ QGDT +LA VYGP E ++A++EV+ +P+ G
Sbjct: 35 LREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGPAEVKVSKEIYDRATVEVLIQPKMGLP 94
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
E+ E ++ T ++ +LT++P ++ +VI+QVVHDDG+LL C +NAAC AL+DAG+P
Sbjct: 95 SVRERAREQCVRETCEAALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLP 154
Query: 134 MKHLAVAICCCSAESGYCILDPTKLEEQKMKGF-AYLVFPN--SILSVLPEGSSLVQ 187
M L ++ C ++ G I DPT +E++ + + + N ++L GS VQ
Sbjct: 155 MSRLFCSVTCAISKEGQIITDPTARQEKESRALLTFAIDSNERNVLMSSTTGSFSVQ 211
Score = 57 (25.1 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 192 EHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
E ++ S T G+ SV + C+ + AS ++ F R S++ +
Sbjct: 196 ERNVLMSSTTGSFSVQELQQCIAISQKASEQIFQFYRDSVKRR 238
>TAIR|locus:2060111 [details] [associations]
symbol:AT2G07110 "AT2G07110" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC005693
IPI:IPI00528190 PIR:D84482 RefSeq:NP_178726.1 UniGene:At.52666
ProteinModelPortal:Q9ZV81 SMR:Q9ZV81 EnsemblPlants:AT2G07110.1
GeneID:815280 KEGG:ath:AT2G07110 TAIR:At2g07110 eggNOG:NOG280382
HOGENOM:HOG000095719 OMA:FIFSEDT PhylomeDB:Q9ZV81
ProtClustDB:CLSN2913059 ArrayExpress:Q9ZV81 Genevestigator:Q9ZV81
Uniprot:Q9ZV81
Length = 150
Score = 163 (62.4 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 32/44 (72%), Positives = 38/44 (86%)
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
++ K EKEYE ILKRTLQSIC+L + PNTTTSVIIQVVHD G++
Sbjct: 76 RLRKVEKEYETILKRTLQSICVLRVVPNTTTSVIIQVVHDGGSV 119
Score = 113 (44.8 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 22 SILHRAHGSASWS-QGDTKVLAAVYGPKAGTKKNENPEKASIE 63
S L+ HG+ S+ DTKVL+A YGPKA TKKNEN EKA ++
Sbjct: 8 SFLNGIHGTLSFIFSEDTKVLSAQYGPKARTKKNENAEKACLK 50
>TAIR|locus:2076710 [details] [associations]
symbol:RRP41 "AT3G61620" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0004527 EMBL:AL132959
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
HOGENOM:HOG000229515 OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666
HSSP:P50597 EMBL:AF191741 EMBL:BT005485 EMBL:AK118846
IPI:IPI00547870 PIR:T47954 RefSeq:NP_001118878.1 RefSeq:NP_191721.1
UniGene:At.20638 ProteinModelPortal:Q9SP08 SMR:Q9SP08 IntAct:Q9SP08
STRING:Q9SP08 PaxDb:Q9SP08 PRIDE:Q9SP08 DNASU:825335
EnsemblPlants:AT3G61620.1 EnsemblPlants:AT3G61620.2 GeneID:825335
KEGG:ath:AT3G61620 TAIR:At3g61620 InParanoid:Q9SP08
PhylomeDB:Q9SP08 ProtClustDB:CLSN2685258 ArrayExpress:Q9SP08
Genevestigator:Q9SP08 Uniprot:Q9SP08
Length = 241
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 61/165 (36%), Positives = 93/165 (56%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-----KAGTKKNENP-- 57
R DGR N++R + ++ +A GSA + G+TKV+AAVYGP K+ KKN++
Sbjct: 10 RLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAVV 69
Query: 58 --EKASIEVIWKPRTGQ-IGKPEKEYEIILKRTLQSICILT-INPNTTTSVIIQVVHDDG 113
E + + R Q + E +++++T+++ CILT + P++ + +QV+ DG
Sbjct: 70 LCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEA-CILTELMPHSQIDIFLQVLQADG 128
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKL 158
INAA AL DAGIPM+ LAV+ CSA GY L+ T L
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVS---CSA--GY--LNSTPL 166
>FB|FBgn0032487 [details] [associations]
symbol:Ski6 "Ski6" species:7227 "Drosophila melanogaster"
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005652 "nuclear lamina"
evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0005652 GO:GO:0000176 eggNOG:COG0689
SUPFAM:SSF55666 EMBL:AY071632 ProteinModelPortal:Q8SYC8 SMR:Q8SYC8
IntAct:Q8SYC8 STRING:Q8SYC8 PaxDb:Q8SYC8 PRIDE:Q8SYC8
FlyBase:FBgn0032487 InParanoid:Q8SYC8 OrthoDB:EOG4Z08NJ
ArrayExpress:Q8SYC8 Bgee:Q8SYC8 Uniprot:Q8SYC8
Length = 246
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 51/162 (31%), Positives = 85/162 (52%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENP-----E 58
R DGR P++LR + C + + GSA QG+TKVLAAVYGP +A + E+
Sbjct: 14 RLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQTESVINCQYS 73
Query: 59 KASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPC 118
+A+ + + + E+++ L++ L + + P + + ++V+ DDGA
Sbjct: 74 QATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDDGANYAV 133
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
A+NAA AL+DAGI + VA ++S + D ++ EE
Sbjct: 134 ALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEE 175
>MGI|MGI:1923576 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0035327 "transcriptionally active chromatin" evidence=ISO]
[GO:0045006 "DNA deamination" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:0071028 "nuclear mRNA
surveillance" evidence=ISO] [GO:0071044 "histone mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
MGI:MGI:1923576 Pfam:PF01138 GO:GO:0005737 GO:GO:0030307
GO:GO:0005730 GO:GO:0051607 GO:GO:0017091 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC012277 IPI:IPI00310857
RefSeq:NP_780608.1 UniGene:Mm.322752 ProteinModelPortal:Q921I9
SMR:Q921I9 STRING:Q921I9 PhosphoSite:Q921I9 PaxDb:Q921I9
PRIDE:Q921I9 Ensembl:ENSMUST00000059045 GeneID:109075
KEGG:mmu:109075 InParanoid:Q921I9 ChiTaRS:EXOSC4 NextBio:361620
Bgee:Q921I9 CleanEx:MM_EXOSC4 Genevestigator:Q921I9
GermOnline:ENSMUSG00000034259 Uniprot:Q921I9
Length = 245
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 63/234 (26%), Positives = 106/234 (45%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKM-KGFAYLV 170
+NAA A++DAGIPM+ +C CSA G + D + +EE A +
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224
P S L E S + + +E ++ + A V + R A +S
Sbjct: 190 LPASGQIALLEMDSRLHEDHLEQ-VLEAAAQAARGVHTLLDLVVRQHVQEASVS 242
>UNIPROTKB|Q9NPD3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9606 "Homo sapiens" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=NAS] [GO:0005730 "nucleolus" evidence=NAS]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0006364 "rRNA
processing" evidence=NAS] [GO:0071044 "histone mRNA catabolic
process" evidence=IMP] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IMP] [GO:0045006
"DNA deamination" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0035327 "transcriptionally active
chromatin" evidence=IMP] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0051607
"defense response to virus" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0030307 GO:GO:0005730
GO:GO:0051607 GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460
GO:GO:0000175 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6 GO:GO:0045006
CTD:54512 eggNOG:COG0689 HOGENOM:HOG000229515 HOVERGEN:HBG051519
OMA:DVFIEVL OrthoDB:EOG4PC9T0 GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AF281133 EMBL:AK000598 EMBL:AC109322
EMBL:BC002777 IPI:IPI00745613 RefSeq:NP_061910.1 UniGene:Hs.632041
ProteinModelPortal:Q9NPD3 SMR:Q9NPD3 IntAct:Q9NPD3 STRING:Q9NPD3
PhosphoSite:Q9NPD3 DMDM:14285756 SWISS-2DPAGE:Q9NPD3 PaxDb:Q9NPD3
PRIDE:Q9NPD3 DNASU:54512 Ensembl:ENST00000316052
Ensembl:ENST00000568113 GeneID:54512 KEGG:hsa:54512 UCSC:uc003zau.3
GeneCards:GC08P145133 HGNC:HGNC:18189 HPA:HPA024792 MIM:606491
neXtProt:NX_Q9NPD3 PharmGKB:PA134867931 InParanoid:Q9NPD3
PhylomeDB:Q9NPD3 EvolutionaryTrace:Q9NPD3 GenomeRNAi:54512
NextBio:56896 ArrayExpress:Q9NPD3 Bgee:Q9NPD3 CleanEx:HS_EXOSC4
Genevestigator:Q9NPD3 GermOnline:ENSG00000178896 Uniprot:Q9NPD3
Length = 245
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 65/237 (27%), Positives = 108/237 (45%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKM-KGFAYLV 170
+NAA A++DAGIPM+ +C CSA G + D + +EE A +
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERG--RAASAKLSD 225
P S L E + + + +E ++ + A V + R R AS L D
Sbjct: 190 LPASGQIALLEMDARLHEDHLER-VLEAAAQAARDVHTLLDRVVRQHVREASILLGD 245
>RGD|1310986 [details] [associations]
symbol:Exosc4 "exosome component 4" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=IEA;ISO] [GO:0030307 "positive regulation of cell growth"
evidence=IEA;ISO] [GO:0035327 "transcriptionally active chromatin"
evidence=IEA;ISO] [GO:0045006 "DNA deamination" evidence=IEA;ISO]
[GO:0051607 "defense response to virus" evidence=IEA;ISO]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA;ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=IEA;ISO]
[GO:0004532 "exoribonuclease activity" evidence=ISO]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 RGD:1310986
GO:GO:0005634 GO:GO:0030307 GO:GO:0051607 GO:GO:0017091
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327
GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006 CTD:54512
GeneTree:ENSGT00550000074804 OrthoDB:EOG4PC9T0 GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 IPI:IPI00366418 RefSeq:NP_001128332.1
UniGene:Rn.28481 PRIDE:D4A4Y0 Ensembl:ENSRNOT00000016464
GeneID:300045 KEGG:rno:300045 UCSC:RGD:1310986 NextBio:646189
Uniprot:D4A4Y0
Length = 245
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 60/216 (27%), Positives = 101/216 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEEQKM-KGFAYLV 170
+NAA A++DAGIPM+ +C CSA G + D + +EE A +
Sbjct: 133 GTYAACVNAATLAVMDAGIPMRDF---VCACSAGFVDGTALADLSHVEEAAGGPQLALAL 189
Query: 171 FPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV 206
P S L E S + + +E ++ + A V
Sbjct: 190 LPASGQIALLEMDSRLHEDHLEQ-VLEAAAQAARDV 224
>UNIPROTKB|Q7YRA3 [details] [associations]
symbol:EXOSC4 "Exosome complex component RRP41"
species:9913 "Bos taurus" [GO:0000178 "exosome (RNase complex)"
evidence=ISS] [GO:0071044 "histone mRNA catabolic process"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0000460 "maturation of
5.8S rRNA" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0030307 GO:GO:0005730 GO:GO:0051607
GO:GO:0017091 GO:GO:0004527 GO:GO:0090305 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0035327 GO:GO:0071044
KO:K11600 GO:GO:0000460 GO:GO:0045006 EMBL:AJ518955 EMBL:BC109819
IPI:IPI00697313 RefSeq:NP_001071554.1 UniGene:Bt.16597 HSSP:Q9UXC2
ProteinModelPortal:Q7YRA3 SMR:Q7YRA3 STRING:Q7YRA3
Ensembl:ENSBTAT00000019451 GeneID:618292 KEGG:bta:618292 CTD:54512
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG051519 InParanoid:Q7YRA3 OMA:DVFIEVL OrthoDB:EOG4PC9T0
NextBio:20901104 GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666
Uniprot:Q7YRA3
Length = 245
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>WB|WBGene00007201 [details] [associations]
symbol:exos-4.1 species:6239 "Caenorhabditis elegans"
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0009792 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0008406
GO:GO:0002119 GO:GO:0010171 GO:GO:0040018 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
eggNOG:COG0689 GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
OMA:DVFIEVL Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 54/165 (32%), Positives = 76/165 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP G +K +I
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 65 IWKP-------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ R + K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
L +NA AL DAGIPMK +A A C G I+D T EE
Sbjct: 130 LAACVNATSLALADAGIPMKGIASA-ATCGVVDGKPIVDLTSREE 173
>UNIPROTKB|Q17533 [details] [associations]
symbol:exos-4.1 "Putative exosome complex component RRP41"
species:6239 "Caenorhabditis elegans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0009792 GO:GO:0005737 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0002119 GO:GO:0010171
GO:GO:0040018 GO:GO:0003723 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
Pfam:PF03725 SUPFAM:SSF55666 EMBL:Z73422 PIR:B88880
RefSeq:NP_001021274.1 ProteinModelPortal:Q17533 SMR:Q17533
STRING:Q17533 PaxDb:Q17533 PRIDE:Q17533 EnsemblMetazoa:B0564.1a
GeneID:13198805 KEGG:cel:CELE_B0564.1a CTD:13198805
WormBase:B0564.1a InParanoid:Q17533 NextBio:900408
ArrayExpress:Q17533 InterPro:IPR018336 PROSITE:PS01277
Uniprot:Q17533
Length = 240
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 54/165 (32%), Positives = 76/165 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV 64
R DGR P Q+R + + A GS G+TKVL AVYGP G +K +I
Sbjct: 10 RIDGRRPAQIRNINTRLGLNRNAEGSCYLEHGNTKVLCAVYGPYEGKSSKRIEDKCAIVC 69
Query: 65 IWKP-------RTGQIGKPEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
+ R + K EI +L++ +S+ + P + + +V+ DG+
Sbjct: 70 QYSATKFSGLERKNRTRGDRKSTEISRLLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN 129
Query: 116 LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
L +NA AL DAGIPMK +A A C G I+D T EE
Sbjct: 130 LAACVNATSLALADAGIPMKGIASA-ATCGVVDGKPIVDLTSREE 173
>FB|FBgn0037815 [details] [associations]
symbol:Rrp46 "Rrp46" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0010468 "regulation of gene
expression" evidence=IMP] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005737 GO:GO:0010468 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000176 eggNOG:COG0689 SUPFAM:SSF55666
EMBL:AY058481 ProteinModelPortal:Q95TW1 SMR:Q95TW1 STRING:Q95TW1
PaxDb:Q95TW1 PRIDE:Q95TW1 FlyBase:FBgn0037815 InParanoid:Q95TW1
OrthoDB:EOG4BRV2M ArrayExpress:Q95TW1 Bgee:Q95TW1 Uniprot:Q95TW1
Length = 233
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 49/175 (28%), Positives = 90/175 (51%)
Query: 12 NQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTG 71
++LR + C + L R GS +SQG T ++ AV GP +N + + + +E ++P+ G
Sbjct: 12 DKLRQMHCEFNPLSRCDGSVMYSQGATGLIGAVLGPIEVKTQNLSIDGSYLECNYRPKAG 71
Query: 72 QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG 131
++ E ++ L+ + +P + SV IQ + D G++ CA+N AC A++ G
Sbjct: 72 LPQVTDRIREAAIRDVLELALLSEAHPRSKMSVQIQELEDRGSIDACAVNCACLAMLIGG 131
Query: 132 IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKG---FAYLVFPNSILSVLPEGS 183
+P+K+ A+ E G +LDP + E + FA+ ++L + +GS
Sbjct: 132 LPLKYSFAAVHAIINEQGEYVLDPDQSETLHQRASFTFAFDSVEGNLLLIQTKGS 186
>UNIPROTKB|E2RIM3 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045006
"DNA deamination" evidence=IEA] [GO:0035327 "transcriptionally
active chromatin" evidence=IEA] [GO:0030307 "positive regulation of
cell growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
CTD:54512 GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028
Pfam:PF03725 SUPFAM:SSF55666 EMBL:AAEX03008955 RefSeq:XP_539207.1
Ensembl:ENSCAFT00000002371 GeneID:482086 KEGG:cfa:482086
NextBio:20856762 Uniprot:E2RIM3
Length = 245
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 51/167 (30%), Positives = 85/167 (50%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++T ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLHLRQTFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160
+NAA A++DAGIPM+ +C CSA G+ +D T L +
Sbjct: 133 GTYAACVNAATLAVLDAGIPMRDF---VCACSA--GF--VDNTALAD 172
>UNIPROTKB|F1RSL0 [details] [associations]
symbol:EXOSC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0045006 "DNA
deamination" evidence=IEA] [GO:0035327 "transcriptionally active
chromatin" evidence=IEA] [GO:0030307 "positive regulation of cell
growth" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000460
"maturation of 5.8S rRNA" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005634 GO:GO:0030307 GO:GO:0051607
GO:GO:0017091 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0035327 GO:GO:0071044 KO:K11600 GO:GO:0000460 GO:GO:0045006
GeneTree:ENSGT00550000074804 OMA:DVFIEVL GO:GO:0071028 Pfam:PF03725
SUPFAM:SSF55666 EMBL:FP085471 RefSeq:XP_003125499.1
UniGene:Ssc.8432 Ensembl:ENSSSCT00000006505 GeneID:100511875
KEGG:ssc:100511875 Uniprot:F1RSL0
Length = 245
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 49/169 (28%), Positives = 84/169 (49%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + + +A GSA QG+TK LA VYGP G++ P++A +
Sbjct: 13 RVDGRRARELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALV 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T G+ ++ E + L++ ++ + ++P + + +QV+ DG
Sbjct: 73 NCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQAFEAAILTQLHPRSQIDIYVQVLQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAE--SGYCILDPTKLEE 160
+ +N A A++DAGIPM+ +C CSA G + D + +EE
Sbjct: 133 GIYAACVNVATLAVLDAGIPMRDF---VCACSAGFVDGTALADLSHVEE 178
>ZFIN|ZDB-GENE-040426-1702 [details] [associations]
symbol:exosc4 "exosome component 4" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
ZFIN:ZDB-GENE-040426-1702 GO:GO:0004527 InterPro:IPR020568
SUPFAM:SSF54211 KO:K11600 CTD:54512 HOGENOM:HOG000229515
HOVERGEN:HBG051519 Pfam:PF03725 SUPFAM:SSF55666 EMBL:BC059525
EMBL:BC153617 EMBL:AY576990 IPI:IPI00485513 RefSeq:NP_957033.1
UniGene:Dr.107456 SMR:Q6PBZ8 DNASU:393712 GeneID:393712
KEGG:dre:393712 InParanoid:Q6PBZ8 NextBio:20814714 Uniprot:Q6PBZ8
Length = 245
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 48/153 (31%), Positives = 76/153 (49%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASI 62
R DGR +LR + S+ +A GSA QG+TK LA VYGP G++ ++A I
Sbjct: 13 RLDGRKATELRKVQARMSVFAQADGSAYLEQGNTKALAVVYGPHEIRGSRSKSLHDRAII 72
Query: 63 EVIWKPRTGQIGKPEK---------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
+ T + ++ E + LK+T ++ + + P + + ++++ DG
Sbjct: 73 NCQYSMATFSTAERKRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVKILQADG 132
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
+NAA ALVDAGIPM+ +C CSA
Sbjct: 133 GNYSACVNAATLALVDAGIPMRDY---VCACSA 162
>POMBASE|SPBC115.01c [details] [associations]
symbol:rrp46 "exosome subunit Rrp46 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR001247 PomBase:SPBC115.01c Pfam:PF01138 GO:GO:0005829
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 KO:K12590 PIR:T39298 RefSeq:NP_595260.1
ProteinModelPortal:O42894 STRING:O42894 EnsemblFungi:SPBC115.01c.1
GeneID:2539660 KEGG:spo:SPBC115.01c OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
NextBio:20800814 Uniprot:O42894
Length = 226
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 44/122 (36%), Positives = 64/122 (52%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL R+ GS+ W QG +V+ V GP ++E KA++EV+ +P +G EK
Sbjct: 6 ILSRSDGSSEWKQGSARVICGVNGPIDVKIRDERLNKATVEVLVQPVSGVAETLEKMISS 65
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVHDDGA-LLPCAINAACAALVDAGIPMKHLAVAI 141
+ L+ L P T V IQ++ +DG L IN A AL+DAGI +K++ AI
Sbjct: 66 RIVGILEDAIFLNTYPRTLIQVSIQIIEEDGTDTLAAVINGAVLALLDAGISLKYIPCAI 125
Query: 142 CC 143
C
Sbjct: 126 NC 127
>UNIPROTKB|Q28F19 [details] [associations]
symbol:exosc6 "Exosome complex component MTR3" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000178 "exosome (RNase
complex)" evidence=ISS] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:CR762221
EMBL:BC136080 RefSeq:NP_001017016.1 UniGene:Str.4704
ProteinModelPortal:Q28F19 SMR:Q28F19 STRING:Q28F19
Ensembl:ENSXETT00000016677 GeneID:549770 KEGG:xtr:549770 CTD:5916
Xenbase:XB-GENE-998313 OMA:LANCHSS Bgee:Q28F19 Uniprot:Q28F19
Length = 270
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 61/196 (31%), Positives = 91/196 (46%)
Query: 8 GRNPNQLRPLACSCSILHRAHGSA--SWSQGDTKVLAAVYGPKA---GTKKNENPEKASI 62
GR P++ RP+ +L +A GSA G TKVL AV+GP+ G ++ E +
Sbjct: 34 GRGPSEPRPVFVRAGLLSQAKGSAYLEAGSGGTKVLCAVHGPRERGMGGERAETRGRLLC 93
Query: 63 EVIWKP--RTGQ------IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
++ W P R G G ++ + L+ +L+ L P V + V+ D G+
Sbjct: 94 DLRWAPFSRRGPWSGSCPAGPSPRQAGLQLQESLEPAVRLDRYPRAEVIVWVLVLEDRGS 153
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNS 174
LP A++ A AL DAGI M LA+ G +LDP EE+ G + S
Sbjct: 154 ALPAAVSCASLALADAGIEMFDLALGCGLSRGPGGELLLDPDDDEEEAGSGGTMSL---S 210
Query: 175 ILSVLPEGSSLVQ-GE 189
+L L + S L+ GE
Sbjct: 211 LLPTLNQVSGLISSGE 226
>TAIR|locus:2124024 [details] [associations]
symbol:RRP41L "AT4G27490" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0006396 "RNA processing"
evidence=ISS] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0034968 "histone lysine methylation" evidence=RCA] [GO:0048449
"floral organ formation" evidence=RCA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0009845 "seed germination" evidence=IMP]
[GO:0090351 "seedling development" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005634 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009845 GO:GO:0008408
InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666 KO:K12587
OMA:GRLLCDF EMBL:BT029998 EMBL:BT030054 IPI:IPI00544536
RefSeq:NP_194479.2 UniGene:At.46035 ProteinModelPortal:A2RVK7
SMR:A2RVK7 IntAct:A2RVK7 STRING:A2RVK7 PaxDb:A2RVK7 PRIDE:A2RVK7
EnsemblPlants:AT4G27490.1 GeneID:828858 KEGG:ath:AT4G27490
TAIR:At4g27490 InParanoid:A2RVK7 PhylomeDB:A2RVK7
ProtClustDB:CLSN2680990 Genevestigator:A2RVK7 Uniprot:A2RVK7
Length = 256
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 67/232 (28%), Positives = 104/232 (44%)
Query: 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPE-- 58
++ R DGR +Q RP + A GSA G+TKV+ +V+GP+ K +
Sbjct: 30 LDWSRPDGRGFHQCRPALLQTGAVSSASGSAYAEFGNTKVIVSVFGPRESKKAMVYSDVG 89
Query: 59 KASIEVIW----KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
+ + V + P GQ G KEY +L + L+ + ++ P TT V V+ G+
Sbjct: 90 RLNCNVSYTNFASPTLGQ-GTDHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGS 148
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICC-CSAESGYCILDPTKLEEQKMKG-FAYLVFP 172
L I+ A AL DAGI M L A+ C +S ++DP EE G F P
Sbjct: 149 DLSVLISCASLALADAGIMMYDLITAVSVSCIGKS--LMIDPVTEEEGCEDGSFMMTCMP 206
Query: 173 NSI----LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAAS 220
+ L++ E ++ E M+ + S G + D CL++ +AS
Sbjct: 207 SRYEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMRD----CLKQSASAS 254
>WB|WBGene00000798 [details] [associations]
symbol:crn-5 species:6239 "Caenorhabditis elegans"
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0006309 "apoptotic DNA fragmentation"
evidence=IMP] [GO:0006396 "RNA processing" evidence=IMP]
[GO:0000178 "exosome (RNase complex)" evidence=IMP] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0032077 "positive regulation of
deoxyribonuclease activity" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0008340 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0006396 GO:GO:0003690
GO:GO:0000178 GO:GO:0006309 GO:GO:0008408 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:Z49909 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 GO:GO:0032077 EMBL:AY303579 PIR:T19247
RefSeq:NP_496284.1 UniGene:Cel.23323 ProteinModelPortal:G5EG59
SMR:G5EG59 IntAct:G5EG59 EnsemblMetazoa:C14A4.5 GeneID:174634
KEGG:cel:CELE_C14A4.5 CTD:174634 WormBase:C14A4.5 OMA:CGDNKFN
EvolutionaryTrace:G5EG59 NextBio:884842 Uniprot:G5EG59
Length = 214
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 46/153 (30%), Positives = 74/153 (48%)
Query: 13 QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQ 72
+LR + C S L A GSA +SQG T + A+ GP + E ++++ ++ G
Sbjct: 4 RLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGD 63
Query: 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI 132
I+ TL + L + P+TT SV + + DDG++ AIN AC AL+D G+
Sbjct: 64 --NKFNVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGM 121
Query: 133 PMKHLAVAICCCSAESGYCILDPTKLEEQKMKG 165
P + + + + I+DPT +E G
Sbjct: 122 PFETVFCGVLIVRVKDEL-IIDPTAKQEAASTG 153
>POMBASE|SPAC3G9.10c [details] [associations]
symbol:rrp41 "exosomal 3'-to-5' phosphorolytic
exoribonuclease Rrp41 (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0000175 "3'-5'-exoribonuclease
activity" evidence=ISO] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=ISO] [GO:0000177 "cytoplasmic exosome (RNase
complex)" evidence=ISO] [GO:0000467 "exonucleolytic trimming to
generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=ISO] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=ISO] [GO:0070651 "nonfunctional rRNA decay" evidence=ISO]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=ISO] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=ISO]
[GO:0071042 "nuclear polyadenylation-dependent mRNA catabolic
process" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
PomBase:SPAC3G9.10c Pfam:PF01138 GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0044732 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 GO:GO:0000176 GO:GO:0000175 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
eggNOG:COG0689 HOGENOM:HOG000229515 Pfam:PF03725 SUPFAM:SSF55666
EMBL:D89141 PIR:T11646 PIR:T11740 RefSeq:NP_594082.1
ProteinModelPortal:O42872 IntAct:O42872 STRING:O42872
EnsemblFungi:SPAC3G9.10c.1 GeneID:2543451 KEGG:spo:SPAC3G9.10c
OMA:AIMPKTG OrthoDB:EOG45MRFG NextBio:20804464 Uniprot:O42872
Length = 242
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 59/182 (32%), Positives = 84/182 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASIE 63
R DGR +++R C I +GSA G+TKVL V GP K++ ++ +
Sbjct: 13 RNDGRRWDEMRNFQCRIGIEPSENGSAFIELGNTKVLCIVDGPSEPVIKSKARADRTFVN 72
Query: 64 V---IWKPRTGQIGKPEKEYEII------LKRTLQSICILTINPNTTTSVIIQVVHDDGA 114
V I T + K K I L+ T + I + P + SV + V+ DDGA
Sbjct: 73 VEINIASFSTIDVKKRFKSDRRIQLQCLALQNTFEEIIQTELYPRSQISVYLHVLQDDGA 132
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSA---ESGYCILDPTKLEEQKMKGFAYLVF 171
++ INA AL+DAGIP+K +CC +A ES +LD LEE + V
Sbjct: 133 VMASCINATTLALIDAGIPVKDF---VCCSTAGIVESDM-LLDLNSLEESALSWLTVAVL 188
Query: 172 PN 173
N
Sbjct: 189 GN 190
>CGD|CAL0002905 [details] [associations]
symbol:orf19.4582 species:5476 "Candida albicans" [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IEA] [GO:0000176
"nuclear exosome (RNase complex)" evidence=IEA] [GO:0034473 "U1
snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=IEA]
[GO:0000467 "exonucleolytic trimming to generate mature 3'-end of
5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR001247 CGD:CAL0002905
InterPro:IPR015847 Pfam:PF01138 EMBL:AACQ01000005 EMBL:AACQ01000006
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 RefSeq:XP_722654.1 RefSeq:XP_722799.1
ProteinModelPortal:Q5AMR4 STRING:Q5AMR4 GeneID:3635514
GeneID:3635642 KEGG:cal:CaO19.12051 KEGG:cal:CaO19.4582
Uniprot:Q5AMR4
Length = 240
Score = 173 (66.0 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 52/170 (30%), Positives = 83/170 (48%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGP-KAGTKKNENPEKASI 62
R DGR N+LR C + + + GS+ QG+TKV+ V GP + + ++ E+A+I
Sbjct: 10 RIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVMCTVQGPIEPALRSQQHSERANI 69
Query: 63 EV---IWKPRTGQIGKPEK------EYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
EV I T + K + E + L++T + ++ + P T + +QV+ DG
Sbjct: 70 EVNLNIASFSTFERKKRSRNERRLVELKTTLEKTFEESVMINLYPRTNIVINVQVLCQDG 129
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
+L IN+ AL+DAGI M + C + +LD LEE M
Sbjct: 130 GMLAAVINSITLALIDAGISMYDYVSGVSCGLYDQTP-LLDVNNLEEHDM 178
>ZFIN|ZDB-GENE-050522-362 [details] [associations]
symbol:exosc6 "exosome component 6" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138
ZFIN:ZDB-GENE-050522-362 GO:GO:0005737 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364
HSSP:Q9UXC2 eggNOG:COG0689 GeneTree:ENSGT00550000074804
HOGENOM:HOG000229515 EMBL:BC065602 EMBL:BC095173 IPI:IPI00483784
RefSeq:NP_001018322.1 UniGene:Dr.80144 ProteinModelPortal:Q6P0I8
STRING:Q6P0I8 Ensembl:ENSDART00000052348 GeneID:326786
KEGG:dre:326786 CTD:118460 HOVERGEN:HBG057826 InParanoid:Q6P0I8
KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K NextBio:20809731
Bgee:Q6P0I8 Uniprot:Q6P0I8
Length = 271
Score = 174 (66.3 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 50/163 (30%), Positives = 81/163 (49%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVI--- 65
R +RP+ C ++ +A GSA G+TK++ +VYGPK +++E K V
Sbjct: 37 RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96
Query: 66 WKP-----RTGQI-GKPEKEYEIILKRTLQ-SICILTINPNTTTSVIIQVVHDDGALLPC 118
P R I G E++ L +L+ +C+ P + V + V+ +DG++L
Sbjct: 97 LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRY-PRSQIDVNVMVLENDGSVLAH 155
Query: 119 AINAACAALVDAGIPMKHLAVAICCCSAESGY-CILDPTKLEE 160
A+ A AL DAGI M + + C +SG C++DP+ EE
Sbjct: 156 AVTCASMALADAGIEMYDIVLG--CTLRQSGNACLVDPSYAEE 196
>SGD|S000003327 [details] [associations]
symbol:RRP46 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay" evidence=IC]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IC] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IC] [GO:0043628
"ncRNA 3'-end processing" evidence=IC] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IC] InterPro:IPR001247 SGD:S000003327 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005730 EMBL:BK006941 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0000176 GO:GO:0000177 GO:GO:0000467 GO:GO:0070651
GO:GO:0071042 GO:GO:0070478 GO:GO:0070481 GO:GO:0071051
eggNOG:COG0689 Pfam:PF03725 SUPFAM:SSF55666 KO:K12590
GeneTree:ENSGT00550000075002 OMA:YPRQLIQ OrthoDB:EOG4HDX3Z
EMBL:Z72880 EMBL:AY389297 PIR:S64390 RefSeq:NP_011609.2
ProteinModelPortal:P53256 SMR:P53256 DIP:DIP-6838N IntAct:P53256
MINT:MINT-614217 STRING:P53256 PaxDb:P53256 PeptideAtlas:P53256
EnsemblFungi:YGR095C GeneID:852987 KEGG:sce:YGR095C CYGD:YGR095c
HOGENOM:HOG000248419 NextBio:972806 Genevestigator:P53256
GermOnline:YGR095C Uniprot:P53256
Length = 223
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 60/221 (27%), Positives = 94/221 (42%)
Query: 23 ILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEI 82
IL GS+ + DTKV+ +V GP + E P + ++E+I +P G EK E
Sbjct: 9 ILDHVDGSSEFVSQDTKVICSVTGPIEPKARQELPTQLALEIIVRPAKGVATTREKVLED 68
Query: 83 ILKRTLQSICILTINPNTTTSVIIQVVH---DDGAL----LPCAINAACAALVDAGIPMK 135
L+ L + P + Q++ D+ L C INAA ALVDAGI +
Sbjct: 69 KLRAVLTPLITRHCYPRQLCQITCQILESGEDEAEFSLRELSCCINAAFLALVDAGIALN 128
Query: 136 HLAVAI-CCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHG 194
+ +I ++ I+DPT E+ K+ LSV V G +
Sbjct: 129 SMCASIPIAIIKDTSDIIVDPTA-EQLKIS-----------LSVHTLALEFVNGGKVVKN 176
Query: 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235
++ ++G + D F LE G +L +RR +Q +
Sbjct: 177 VLLLDSNGDFNEDQLFSLLELGEQKCQELVTNIRRIIQDNI 217
>UNIPROTKB|F1RH84 [details] [associations]
symbol:EXOSC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045006 "DNA deamination" evidence=IEA] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IEA] [GO:0035327
"transcriptionally active chromatin" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR015847
GO:GO:0051607 GO:GO:0000178 GO:GO:0035327 GO:GO:0043928
GO:GO:0045006 Pfam:PF03725 SUPFAM:SSF55666
GeneTree:ENSGT00550000075002 EMBL:FP700139
Ensembl:ENSSSCT00000003348 Uniprot:F1RH84
Length = 109
Score = 125 (49.1 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVF 171
LL C +NAAC ALVDAG+PM+ L + C G +LDPT +E++ + A L F
Sbjct: 3 LLACCLNAACMALVDAGVPMRALFCGVTCALDSDGTFMLDPTAKQEKEAR--AVLTF 57
Score = 56 (24.8 bits), Expect = 5.1e-12, Sum P(2) = 5.1e-12
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 189 EPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234
+ +E ++ S T G S + CL + AS + F R SLQ +
Sbjct: 60 DSVERKLLMSTTKGLYSDAELQQCLAAAQTASQHVFRFYRESLQRR 105
>UNIPROTKB|Q5RKV6 [details] [associations]
symbol:EXOSC6 "Exosome complex component MTR3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000178 "exosome (RNase complex)" evidence=IDA]
[GO:0045190 "isotype switching" evidence=ISS] [GO:0045006 "DNA
deamination" evidence=IDA] [GO:0004532 "exoribonuclease activity"
evidence=IDA] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0005829 GO:GO:0010467 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GO:GO:0045190 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0043928 PDB:2NN6 PDBsum:2NN6
GO:GO:0045006 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
EMBL:AC009060 EMBL:BC052252 IPI:IPI00073602 RefSeq:NP_478126.1
UniGene:Hs.660633 UniGene:Hs.740491 ProteinModelPortal:Q5RKV6
SMR:Q5RKV6 IntAct:Q5RKV6 STRING:Q5RKV6 PhosphoSite:Q5RKV6
DMDM:74736141 PaxDb:Q5RKV6 PeptideAtlas:Q5RKV6 PRIDE:Q5RKV6
Ensembl:ENST00000435634 GeneID:118460 KEGG:hsa:118460
UCSC:uc002eym.1 GeneCards:GC16M070284 HGNC:HGNC:19055 MIM:606490
neXtProt:NX_Q5RKV6 PharmGKB:PA134932096 eggNOG:NOG303282
InParanoid:Q5RKV6 PhylomeDB:Q5RKV6 ChiTaRS:EXOSC6
EvolutionaryTrace:Q5RKV6 GenomeRNAi:118460 NextBio:80292
Bgee:Q5RKV6 CleanEx:HS_EXOSC6 Genevestigator:Q5RKV6 Uniprot:Q5RKV6
Length = 272
Score = 122 (48.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 37/115 (32%), Positives = 53/115 (46%)
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G E+E + L+ L+ L P V ++ D G+ L A+ AA AL DAG+
Sbjct: 116 GCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVE 175
Query: 134 MKHLAVAICCCSAESGYC---ILDPTKLEEQKMK-GFAYLVFP--NSILSVLPEG 182
M L V C S G +LDPT+LEE++ G + P N + +L G
Sbjct: 176 MYDLVVG-CGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSG 229
Score = 94 (38.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 4 DRADG-RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKA 60
+ A G R+P +LRP+ +L +A GSA G TKVL AV GP+ G ++ P A
Sbjct: 25 EEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGA 84
Query: 61 SIE 63
E
Sbjct: 85 GGE 87
>MGI|MGI:1919794 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0045006 "DNA deamination" evidence=ISO]
[GO:0045190 "isotype switching" evidence=IMP] [GO:0045830 "positive
regulation of isotype switching" evidence=IMP] InterPro:IPR001247
InterPro:IPR015847 MGI:MGI:1919794 Pfam:PF01138 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0045190
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 HSSP:Q9UXC2
eggNOG:COG0689 HOGENOM:HOG000229515 SUPFAM:SSF55666 CTD:118460
HOVERGEN:HBG057826 KO:K12587 OrthoDB:EOG4D7Z6K EMBL:AK012102
EMBL:AK088532 EMBL:BC116985 EMBL:BC119082 IPI:IPI00466593
RefSeq:NP_082550.1 UniGene:Mm.24174 UniGene:Mm.334810
ProteinModelPortal:Q8BTW3 SMR:Q8BTW3 IntAct:Q8BTW3 STRING:Q8BTW3
PhosphoSite:Q8BTW3 PaxDb:Q8BTW3 PRIDE:Q8BTW3 GeneID:72544
KEGG:mmu:72544 UCSC:uc009nlp.1 InParanoid:Q8BTW3 NextBio:336459
CleanEx:MM_EXOSC6 Genevestigator:Q8BTW3 Uniprot:Q8BTW3
Length = 273
Score = 116 (45.9 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 38/121 (31%), Positives = 54/121 (44%)
Query: 68 PRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAAL 127
P+ G G ++E + L+ L+ L P V ++ D G L A+ AA AL
Sbjct: 113 PQGG--GGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAALAL 170
Query: 128 VDAGIPMKHLAVAICCCSAESGYC---ILDPTKLEEQ-KMKGFAYLVFP--NSILSVLPE 181
DAG+ M L V C S G +LDPT+LEE+ G + P N + +L
Sbjct: 171 ADAGVEMYDLVVG-CGLSLTPGPSPTWLLDPTRLEEEHSAAGLTVALMPVLNQVAGLLGS 229
Query: 182 G 182
G
Sbjct: 230 G 230
Score = 94 (38.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASIE 63
R+P +LRP+ +L +A GSA G TKVL AV GP+ G ++ P A E
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGSGPAGAGGE 87
>RGD|1309832 [details] [associations]
symbol:Exosc6 "exosome component 6" species:10116 "Rattus
norvegicus" [GO:0000178 "exosome (RNase complex)" evidence=IEA;ISO]
[GO:0045006 "DNA deamination" evidence=IEA;ISO] [GO:0045190
"isotype switching" evidence=ISO] [GO:0045830 "positive regulation
of isotype switching" evidence=ISO] [GO:0004532 "exoribonuclease
activity" evidence=ISO] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 RGD:1309832 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0045006 GeneTree:ENSGT00550000074804
SUPFAM:SSF55666 CTD:118460 KO:K12587 OMA:GRLLCDF OrthoDB:EOG4D7Z6K
IPI:IPI00359650 RefSeq:XP_003751927.1 RefSeq:XP_003753157.1
PRIDE:D3ZW38 Ensembl:ENSRNOT00000025179 GeneID:307850
KEGG:rno:307850 UCSC:RGD:1309832 Uniprot:D3ZW38
Length = 272
Score = 117 (46.2 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 69 RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALV 128
R Q ++E + L+ L+ L P V ++ D G+ L A+ AA AL
Sbjct: 111 RAPQGSSEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALA 170
Query: 129 DAGIPMKHLAVAICCCSAESGYC---ILDPTKLEEQKMK-GFAYLVFP--NSILSVLPEG 182
DAG+ M L V C S G +LDPT+LEE+ + G + P N + +L G
Sbjct: 171 DAGVEMYDLVVG-CGLSLTPGPSPTWLLDPTRLEEEHSEAGLTVALMPVLNQVAGLLGSG 229
Score = 92 (37.4 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 9 RNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA--GTKKNENPEKASIE 63
R+P +LRP+ +L +A GSA G TKVL AV GP+ G ++ P A E
Sbjct: 31 RDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGE 87
>UNIPROTKB|Q95Z09 [details] [associations]
symbol:RRP41B "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AJ309001 ProteinModelPortal:Q95Z09
IntAct:Q95Z09 STRING:Q95Z09 GenomeReviews:AE017150_GR
eggNOG:NOG277594 ProtClustDB:CLSZ2438846 Uniprot:Q95Z09
Length = 256
Score = 161 (61.7 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 62/194 (31%), Positives = 91/194 (46%)
Query: 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASI 62
+ R DGR ++R S L + GSA +SQG T V A+ GP A ++N I
Sbjct: 4 ISRRDGRTAREMRGKELRTSDLSQFDGSAWYSQGLTAVTVAINGPTAARQENYRRCTTCI 63
Query: 63 EVIWK---PRTGQIGK----PEKEYEII----LKRTLQSI--CILTIN--PNTTTSVIIQ 107
V P+ G G+ +E E LK+ L S+ I+ ++ P +
Sbjct: 64 HVNRAARIPQEGGTGRLIMMERRERERCEDGELKQFLTSLVEAIVCLDRFPRCVLEAHVT 123
Query: 108 VVHDDGALLPCAINAACAALVDAGIPMKHL--AVAICCCSAE-SGY-----CILDPTKLE 159
V+ DDGAL A NA AL+DAG+P + AV++ C+ E SG LDPT +E
Sbjct: 124 VLMDDGALFAVASNAIMCALLDAGVPCRSTIAAVSLIMCNPEASGNEGEPEIFLDPTAVE 183
Query: 160 EQ--KMKGFAYLVF 171
E +++ +A F
Sbjct: 184 ESTDEVRSYASATF 197
>ASPGD|ASPL0000013004 [details] [associations]
symbol:AN3812 species:162425 "Emericella nidulans"
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA] [GO:0034476 "U5 snRNA 3'-end processing"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IEA]
[GO:0071051 "polyadenylation-dependent snoRNA 3'-end processing"
evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA] [GO:0000177 "cytoplasmic exosome (RNase complex)"
evidence=IEA] [GO:0000176 "nuclear exosome (RNase complex)"
evidence=IEA] InterPro:IPR001247 Pfam:PF01138 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004519 InterPro:IPR020568 SUPFAM:SSF54211
KO:K11600 eggNOG:COG0689 HOGENOM:HOG000229515 RefSeq:XP_661416.1
ProteinModelPortal:Q5B6L8 STRING:Q5B6L8
EnsemblFungi:CADANIAT00004900 GeneID:2873233 KEGG:ani:AN3812.2
OMA:GCKQVRE OrthoDB:EOG4H1F52 Uniprot:Q5B6L8
Length = 265
Score = 159 (61.0 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 51/157 (32%), Positives = 74/157 (47%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAG-----TKKNENPEK 59
R DGR N+LR L S + GS+ + G+T +L +V+GP G T +
Sbjct: 15 RLDGRRWNELRLLQAQISTNPASSGSSYLAMGNTTILCSVHGPAEGRRGDATGGSAGSSG 74
Query: 60 ASIEVIW----------KPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV 109
A +EV K R G + L+ QS + P++T S+ + V+
Sbjct: 75 AVVEVDVNIAGFASVDRKRRAGGSDRQSGRIASTLRSAFQSHLHTYLYPHSTISIHVSVL 134
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSA 146
DG++L A+NA ALVDAGIPM L +C C+A
Sbjct: 135 SSDGSVLAAAVNACTLALVDAGIPMPGL---LCGCTA 168
>SGD|S000003427 [details] [associations]
symbol:SKI6 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IC] [GO:0071039 "nuclear
polyadenylation-dependent CUT catabolic process" evidence=IMP]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IDA] [GO:0016075 "rRNA catabolic process"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0034475 "U4 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034427 "nuclear-transcribed mRNA catabolic process,
exonucleolytic, 3'-5'" evidence=IMP] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IMP] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IGI;IMP]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=IDA]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=IDA]
[GO:0070651 "nonfunctional rRNA decay" evidence=IC]
InterPro:IPR001247 SGD:S000003427 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0071039
GO:GO:0071038 InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:NP_011711.3
GeneID:853109 KEGG:sce:YGR195W KO:K11600 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 GO:GO:0071051 KO:K03233 eggNOG:COG0689
GeneTree:ENSGT00550000074804 HOGENOM:HOG000229515 OMA:DVFIEVL
GO:GO:0071028 Pfam:PF03725 SUPFAM:SSF55666 EMBL:X82775 EMBL:Z72981
GO:GO:0034475 GO:GO:0034476 GO:GO:0034473 OrthoDB:EOG45MRFG
EMBL:Z72980 EMBL:AY558509 PIR:S59180 RefSeq:NP_011717.4 PDB:2WP8
PDBsum:2WP8 ProteinModelPortal:P46948 SMR:P46948 DIP:DIP-2083N
IntAct:P46948 MINT:MINT-555587 STRING:P46948 PaxDb:P46948
EnsemblFungi:YGR195W GeneID:853115 KEGG:sce:YGR201C CYGD:YGR195w
EvolutionaryTrace:P46948 NextBio:973121 Genevestigator:P46948
GermOnline:YGR195W Uniprot:P46948
Length = 246
Score = 154 (59.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 55/171 (32%), Positives = 78/171 (45%)
Query: 5 RADGRNPNQLRPLACSCSIL-HRAHGSASWSQGDTKVLAAVYGPKAGTKKNE-NPEKASI 62
R DGR N+LR S + H A GS+ QG+ K++ V GPK K++ + KA +
Sbjct: 13 RLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALL 72
Query: 63 EV---IWK----PRTGQIGKPEK---EYEIILKRTLQSICILTINPNTTTSVIIQVVHDD 112
V I K R+ K E+ E + L R + +L I P T + I V+ D
Sbjct: 73 NVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132
Query: 113 GALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKM 163
G ++ IN AL+DAGI M I ++ +LD LEE M
Sbjct: 133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDTTP-LLDTNSLEENAM 182
>FB|FBgn0036916 [details] [associations]
symbol:Mtr3 "Mtr3" species:7227 "Drosophila melanogaster"
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISS]
[GO:0000176 "nuclear exosome (RNase complex)" evidence=ISS;IDA]
[GO:0000177 "cytoplasmic exosome (RNase complex)" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010468 "regulation of
gene expression" evidence=IMP] InterPro:IPR001247 Pfam:PF01138
GO:GO:0005737 EMBL:AE014296 GO:GO:0016787 GO:GO:0010468
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000176
GeneTree:ENSGT00550000074804 KO:K12587 FlyBase:FBgn0036916
UniGene:Dm.13639 EMBL:BT030767 RefSeq:NP_649157.1 UniGene:Dm.27179
SMR:Q9VW53 IntAct:Q9VW53 MINT:MINT-905327 STRING:Q9VW53
EnsemblMetazoa:FBtr0074918 GeneID:40173 KEGG:dme:Dmel_CG8025
UCSC:CG8025-RA CTD:40173 InParanoid:Q9VW53 OMA:STAINCC
GenomeRNAi:40173 NextBio:817403 Uniprot:Q9VW53
Length = 326
Score = 145 (56.1 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 70/249 (28%), Positives = 105/249 (42%)
Query: 9 RNPNQLRP--LACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPEKASIE 63
R P QL P +L GSA G+TKVLA V PK + + N +
Sbjct: 40 REPTQLAPRNTFIRAGVLTTVRGSAYMEYGNTKVLAIVAPPKELIRASARRMNMGVLNCY 99
Query: 64 VIWKP-RTGQIGK-PEKEYEI--ILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCA 119
V + TG + PE+E + +L + ++ + T N + + ++ DDG LL A
Sbjct: 100 VNFAAFSTGDLDSVPERERHLSSMLTKAMEPVVCRTEFLNFQLDIRVLILDDDGCLLSTA 159
Query: 120 INAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT-KLEEQKMKGFAYLVFPNSILSV 178
IN ALV+ GI L A C + L+P+ K+EE K NS
Sbjct: 160 INCCGVALVECGISTYDLITASTACIYRD-HVFLNPSAKVEELLWK------HRNSSTDS 212
Query: 179 LPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASA---KLSDF---LRRSLQ 232
SS EHG+I +T + + C + G + A KL D+ + +SL+
Sbjct: 213 TTSPSSA-----QEHGLI--ITASMDTFEQIAQCQQCGYLSPATYVKLLDYTLAINKSLR 265
Query: 233 SKLPGDLSK 241
+ G L+K
Sbjct: 266 ELVKGVLTK 274
>TAIR|locus:2079429 [details] [associations]
symbol:RIF10 "AT3G03710" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=IGI]
[GO:0006401 "RNA catabolic process" evidence=IGI] [GO:0031425
"chloroplast RNA processing" evidence=IGI] [GO:0009507
"chloroplast" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0010323 "negative regulation of isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=IMP] [GO:0015995 "chlorophyll biosynthetic process"
evidence=IMP] [GO:0016120 "carotene biosynthetic process"
evidence=IMP] [GO:0016123 "xanthophyll biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 PROSITE:PS50084
PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 GO:GO:0009570 EMBL:CP002686 GO:GO:0006397
GO:GO:0003723 GO:GO:0006401 GO:GO:0008033 GO:GO:0006402
GO:GO:0016036 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
EMBL:AC009540 InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AC009327
GO:GO:0016123 GO:GO:0006364 GO:GO:0015995 GO:GO:0000175
GO:GO:0016120 InterPro:IPR022967 SMART:SM00316 Pfam:PF03725
SUPFAM:SSF55666 EMBL:AJ252123 EMBL:AF450480 IPI:IPI00534675
RefSeq:NP_187021.2 UniGene:At.26536 HSSP:Q53597
ProteinModelPortal:Q8GZQ3 SMR:Q8GZQ3 STRING:Q8GZQ3 PRIDE:Q8GZQ3
EnsemblPlants:AT3G03710.1 GeneID:821181 KEGG:ath:AT3G03710
GeneFarm:4127 TAIR:At3g03710 HOGENOM:HOG000218327 InParanoid:Q8GZQ3
KO:K00962 OMA:AQRIDNL PhylomeDB:Q8GZQ3 ProtClustDB:PLN00207
ArrayExpress:Q8GZQ3 Genevestigator:Q8GZQ3 GO:GO:0004654
GO:GO:0031425 GO:GO:0010323 Gene3D:1.10.10.400 PANTHER:PTHR11252
SUPFAM:SSF46915 TIGRFAMs:TIGR03591 Uniprot:Q8GZQ3
Length = 922
Score = 151 (58.2 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 42/145 (28%), Positives = 76/145 (52%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNENPEKAS-- 61
R+DGR +++RP+ C +L RAHGS +++G+T+ LA V G K ++ +N E +
Sbjct: 447 RSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGETQALAVVTLGDKQMAQRIDNLEGSDEY 506
Query: 62 ----IEVIWKPRT----GQIGKPEKE---YEIILKRTLQSICILTINPNTTTSVIIQVVH 110
++ + P + G+IG P + + + +R L++I + T V V+
Sbjct: 507 KRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRVESTVIE 566
Query: 111 DDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ C AL DAG+P+K
Sbjct: 567 SNGSSSMASVCGGCLALQDAGVPVK 591
>UNIPROTKB|Q95Z13 [details] [associations]
symbol:RRP41A "Rrp41p homologue" species:5691 "Trypanosoma
brucei" [GO:0000178 "exosome (RNase complex)" evidence=IDA]
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 SUPFAM:SSF55666 EMBL:AJ308997
ProteinModelPortal:Q95Z13 IntAct:Q95Z13 STRING:Q95Z13
EuPathDB:TriTrypDB:Tb427.10.7450 EuPathDB:TriTrypDB:Tb927.10.7450
Uniprot:Q95Z13
Length = 252
Score = 141 (54.7 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 47/165 (28%), Positives = 77/165 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE---NPEKAS 61
R DGR N+ R LA + G + G + V A VYGP+ + + + N +
Sbjct: 14 RLDGRRQNEPRRLALEFGKISGCDGCCTVVSGLSHVCATVYGPREVSNRLDGKYNEVTIT 73
Query: 62 IEVIWKPRTGQIGKPEKEY----EIILKRTL---QSICILTINPNTTTSVIIQVVHDDGA 114
+V+ G+ + ++ Y E I L +S+ +L+ PN+ + I+V+ DG+
Sbjct: 74 CDVVVAAFAGERRREQQRYSRLSEDISASVLDVARSVVLLSQYPNSQIHICIEVLKQDGS 133
Query: 115 LLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLE 159
INAAC AL+DA I M+ + E G+ ++D T E
Sbjct: 134 DKAACINAACLALIDASIAMRDVVYTQTVGLIE-GFDVVDLTTEE 177
>UNIPROTKB|G4MRK3 [details] [associations]
symbol:MGG_16298 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001247 Pfam:PF01138 EMBL:CM001231 GO:GO:0043581
InterPro:IPR020568 SUPFAM:SSF54211 RefSeq:XP_003710038.1
ProteinModelPortal:G4MRK3 EnsemblFungi:MGG_16298T0 GeneID:12985322
KEGG:mgr:MGG_16298 Uniprot:G4MRK3
Length = 260
Score = 139 (54.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 45/147 (30%), Positives = 73/147 (49%)
Query: 11 PNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRT 70
P++ P A S + RA GSA +S V A+ GP +++E+P +A ++VI +P
Sbjct: 2 PSRGEPAAL-VSHIPRADGSAIYSHAGYTVTASANGPIEAQRRDEDPYEALVDVIVRPAA 60
Query: 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVV---HDDGA------------L 115
G G E+ E +L+ TL+ I ++ P V++QV +D A +
Sbjct: 61 GVGGTRERHLESLLQATLRQIILVKNFPRGLIQVVLQVKSSPENDYASTKLVQANLNLPI 120
Query: 116 LPCAINAACAALVDAGIPMKHLAVAIC 142
+P + AA AL+ A IP++ A A C
Sbjct: 121 IPALLQAAVLALLSAAIPLR--ATATC 145
>UNIPROTKB|F1S435 [details] [associations]
symbol:EXOSC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045006 "DNA deamination" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] InterPro:IPR001247
Pfam:PF01138 GO:GO:0000178 InterPro:IPR020568 SUPFAM:SSF54211
GO:GO:0045006 GeneTree:ENSGT00550000074804 OMA:GRLLCDF
EMBL:CU929739 Ensembl:ENSSSCT00000003013 Uniprot:F1S435
Length = 254
Score = 91 (37.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPK 48
E + R+P +LRP+ +L +A GSA G TKVL AV GP+
Sbjct: 24 EDEEPAARDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPR 70
Score = 87 (35.7 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/74 (33%), Positives = 33/74 (44%)
Query: 74 GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP 133
G E+E + L+ L+ L P V ++ D G+ L A+ AA AL DAGI
Sbjct: 116 GGEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGIE 175
Query: 134 MKHLAVAICCCSAE 147
M L V C E
Sbjct: 176 MYDLVVG--CVEEE 187
>UNIPROTKB|G4MM07 [details] [associations]
symbol:MGG_06785 "Exosome complex exonuclease RRP41"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0004527 EMBL:CM001231
InterPro:IPR020568 SUPFAM:SSF54211 KO:K11600 SUPFAM:SSF55666
RefSeq:XP_003709504.1 ProteinModelPortal:G4MM07
EnsemblFungi:MGG_06785T0 GeneID:2684958 KEGG:mgr:MGG_06785
Uniprot:G4MM07
Length = 280
Score = 129 (50.5 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 55/227 (24%), Positives = 91/227 (40%)
Query: 6 ADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEV- 64
ADG + ++ C + + + + + A G G + E SI V
Sbjct: 36 ADGSSYLEMGHTKVMCVVTGPSEAAPGQRRTGVNITATATGGGQGAQSKEAEVVVSIVVA 95
Query: 65 ----IWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAI 120
+ + + G+ K +E + + L + + ++T + + V+ DG+LL I
Sbjct: 96 GFSSVDRKKRGRGDKRIQELQATVSHALSATLHTHLFQHSTITFSLHVLSQDGSLLAALI 155
Query: 121 NAACAALVDAGIPMKHLAVAICCCSAESGYC--------ILDPTKLEEQKMKGFAYLVFP 172
NAA A VDAGIPM VA C + S Y +LD + EE ++ G
Sbjct: 156 NAATLAAVDAGIPMADYVVA-CSAGSTSSYAAADESADPLLDLNQQEETELPGLTAATLG 214
Query: 173 NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCL--ERGR 217
+ V+ S VQ +E G++ G V + + ERGR
Sbjct: 215 ATDRVVVLSCESRVQASRLE-GMLAVAVDGCKQVREILDRVVKERGR 260
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 44/148 (29%), Positives = 73/148 (49%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNEN----PEK 59
R DGR+ +++RP+ C L HGSA +S+GDT+VL V G A + ++ P+K
Sbjct: 364 RVDGRHVDEVRPIYCESHYLPALHGSALFSRGDTQVLCTVTLGAPAEAQSLDSLVGPPKK 423
Query: 60 A-SIEVIWKPR-TGQIGKPEK-EYEIILKRTLQSICILTINPNT-----TTSVIIQVVHD 111
+ + P T ++GK + TL +L + P T + +V+
Sbjct: 424 RFMLHYSFPPYCTNEVGKRGGLNRREVGHGTLAEKALLAVLPPEEAFPYTIRINSEVMSS 483
Query: 112 DGALLPCAINAACAALVDAGIPMK-HLA 138
DG+ ++ AL+DAGIP++ H+A
Sbjct: 484 DGSTSMASVCGGSMALMDAGIPLRAHVA 511
>UNIPROTKB|Q8IEW0 [details] [associations]
symbol:EAP4 "Exosome-associated protein 4" species:5691
"Trypanosoma brucei" [GO:0000178 "exosome (RNase complex)"
evidence=IDA] InterPro:IPR001247 Pfam:PF01138 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 EMBL:AJ516002
ProteinModelPortal:Q8IEW0 IntAct:Q8IEW0 STRING:Q8IEW0
EuPathDB:TriTrypDB:Tb11.01.2820 EuPathDB:TriTrypDB:Tb427tmp.01.2820
Uniprot:Q8IEW0
Length = 227
Score = 117 (46.2 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 37/174 (21%), Positives = 75/174 (43%)
Query: 3 VDRADGR-NPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKA---GTKKNENPE 58
++R+ GR +P+++R ++L +++ SA G T+V+ AV+ P+ + +
Sbjct: 1 MERSHGRRSPDEVRYPHIVLNVLGQSYSSACIEVGSTRVVCAVHHPQQLIDEYRGSRGRV 60
Query: 59 KASIEVIWKPRTGQIG-----KPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDG 113
++ + + ++ PEK+ + L+ ++ +L P V+++++ +DG
Sbjct: 61 ACTVRRSSRAQKHELAFRADVTPEKDLALALEGVVEQAVVLEKIPQLLVEVVVEILAEDG 120
Query: 114 ALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFA 167
L CAAL G M A G + DP+ E K A
Sbjct: 121 GLWDAIATGVCAALASGGFEMYDTFSACGAALLPDGSIVTDPSATEWNTAKATA 174
>GENEDB_PFALCIPARUM|PFB0415c [details] [associations]
symbol:PFB0415c "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 118 (46.6 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 40/167 (23%), Positives = 72/167 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIE 63
R + R N++R + S +S G+TK+L VYGP +K + K ++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSKGKVFLD 91
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTL----QSICILTINPNTTTSVIIQVVHDDGALLPCA 119
V IG +++ + +K L +I +L P + + ++ DDG L
Sbjct: 92 VK-SLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSAT 150
Query: 120 INAACAALVDAGIPMKHLAVAI-----CCCSAESGYCILDPTKLEEQ 161
+ AL+ A I MK + ++I C + Y ++D +EE+
Sbjct: 151 LTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEEK 197
>UNIPROTKB|O96177 [details] [associations]
symbol:PFB0415c "3' exoribonuclease, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001247 Pfam:PF01138 InterPro:IPR020568
SUPFAM:SSF54211 EMBL:AE001362 RefSeq:XP_001349602.2
ProteinModelPortal:O96177 EnsemblProtists:PFB0415c:mRNA
GeneID:812684 KEGG:pfa:PFB0415c EuPathDB:PlasmoDB:PF3D7_0209200
HOGENOM:HOG000284275 ProtClustDB:CLSZ2446608 Uniprot:O96177
Length = 275
Score = 118 (46.6 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 40/167 (23%), Positives = 72/167 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIE 63
R + R N++R + S +S G+TK+L VYGP +K + K ++
Sbjct: 32 RINNRKNNEIRDMFIKLGEDENFGSSCFYSLGNTKILTTVYGPNPDSKYATYSKGKVFLD 91
Query: 64 VIWKPRTGQIGKPEKEYEIILKRTL----QSICILTINPNTTTSVIIQVVHDDGALLPCA 119
V IG +++ + +K L +I +L P + + ++ DDG L
Sbjct: 92 VK-SLNINTIGASDRQRDDDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDDGGCLSAT 150
Query: 120 INAACAALVDAGIPMKHLAVAI-----CCCSAESGYCILDPTKLEEQ 161
+ AL+ A I MK + ++I C + Y ++D +EE+
Sbjct: 151 LTCISLALIKAQIQMKDIIISININSIICPVTKKMYHLVDLDGMEEK 197
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 123 (48.4 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 41/146 (28%), Positives = 70/146 (47%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPK---------AGTKKN 54
R DGR P+ +R L +L R HGSA +++G+T+ L A G + GT KN
Sbjct: 317 RIDGREPDMIRALDVMTGVLPRTHGSAIFTRGETQALVTATLGTERDSQLIDDLTGTHKN 376
Query: 55 ENPEKASIEVIWKPRTGQIGKPEKEYEI----ILKRTLQSIC-ILTINPNTTTSVIIQVV 109
+ TG +G P++ EI + KR + ++ LT P + V+ ++
Sbjct: 377 HFMLNYNFPPFCVGETGFVGSPKRR-EIGHGNLAKRGIAAVMPTLTEFPYSIR-VVSEIT 434
Query: 110 HDDGALLPCAINAACAALVDAGIPMK 135
+G+ ++ AL++AG+P+K
Sbjct: 435 ESNGSSSMASVCGTSLALMNAGVPIK 460
>GENEDB_PFALCIPARUM|PF14_0256 [details] [associations]
symbol:PF14_0256 "exosome complex exonuclease
rrp41, putative" species:5833 "Plasmodium falciparum" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 116 (45.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 35/145 (24%), Positives = 64/145 (44%)
Query: 5 RADGRNPNQLRPLACSC---SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE------ 55
R DGR ++ R + S + L G + + G+TK+ A + GP + +E
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKCLVKC 72
Query: 56 NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
N + ++ K R +E ++ I +L + N+ ++ + ++ DG L
Sbjct: 73 NVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERDGGL 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVA 140
A+N AL+DAGI +K+ A
Sbjct: 133 KAAAVNTCILALIDAGIAIKYFISA 157
>UNIPROTKB|Q8ILI7 [details] [associations]
symbol:PF14_0256 "Exosome complex exonuclease rrp41,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000178
"exosome (RNase complex)" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE014187 GO:GO:0004527 GO:GO:0000178
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 KO:K11600
HOGENOM:HOG000229515 OMA:DVFIEVL SUPFAM:SSF55666
RefSeq:XP_001348430.1 ProteinModelPortal:Q8ILI7
EnsemblProtists:PF14_0256:mRNA GeneID:811838 KEGG:pfa:PF14_0256
EuPathDB:PlasmoDB:PF3D7_1427800 ProtClustDB:CLSZ2432000
Uniprot:Q8ILI7
Length = 246
Score = 116 (45.9 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 35/145 (24%), Positives = 64/145 (44%)
Query: 5 RADGRNPNQLRPLACSC---SILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE------ 55
R DGR ++ R + S + L G + + G+TK+ A + GP + +E
Sbjct: 13 RIDGRKNDECRLIKISLGNGNELIDVDGFSFFEIGNTKLFAYIQGPNEYRRPDEKCLVKC 72
Query: 56 NPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL 115
N + ++ K R +E ++ I +L + N+ ++ + ++ DG L
Sbjct: 73 NVFLSPFNILEKKRKKSKDNVTREISSYIRNICNHIILLDLYKNSEINIFLYIIERDGGL 132
Query: 116 LPCAINAACAALVDAGIPMKHLAVA 140
A+N AL+DAGI +K+ A
Sbjct: 133 KAAAVNTCILALIDAGIAIKYFISA 157
>TIGR_CMR|SO_1209 [details] [associations]
symbol:SO_1209 "polyribonucleotide nucleotidyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
eggNOG:COG1185 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591
HOGENOM:HOG000218326 ProtClustDB:PRK11824 RefSeq:NP_716833.2
ProteinModelPortal:Q8EHL1 SMR:Q8EHL1 GeneID:1169037
KEGG:son:SO_1209 PATRIC:23522076 Uniprot:Q8EHL1
Length = 699
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 38/159 (23%), Positives = 71/159 (44%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAA-VYGPKAGTKK-----NENPE 58
R DGR P+ +R L+ +L R HGSA +++G+T+ L G + +K E
Sbjct: 314 RIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERDAQKIDSIMGERTN 373
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + + P TG +G P++ EI + R + ++ + V+ ++
Sbjct: 374 RFMLHYNFPPYSVGETGMVGSPKRR-EIGHGKLAWRGINAVMPSAEEFPYSVRVVSEITE 432
Query: 111 DDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+G+ ++ AL+DAG+P+K I + G
Sbjct: 433 SNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEG 471
>UNIPROTKB|P05055 [details] [associations]
symbol:pnp "polynucleotide phosphorylase monomer"
species:83333 "Escherichia coli K-12" [GO:0006402 "mRNA catabolic
process" evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0035438 "cyclic-di-GMP binding" evidence=IDA] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016020 "membrane" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000175 "3'-5'-exoribonuclease activity" evidence=IEA;IDA]
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=IEA;IDA] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005829 GO:GO:0006950 GO:GO:0016020 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR EMBL:U18997
GO:GO:0003723 GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666 EMBL:J02638
eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS BRENDA:2.7.7.8 ProtClustDB:PRK11824
EMBL:X00761 EMBL:M14425 PIR:H65106 RefSeq:NP_417633.4
RefSeq:YP_491351.1 PDB:1SRO PDB:3CDI PDB:3CDJ PDB:3H1C PDBsum:1SRO
PDBsum:3CDI PDBsum:3CDJ PDBsum:3H1C ProteinModelPortal:P05055
SMR:P05055 DIP:DIP-10522N IntAct:P05055 MINT:MINT-244786
PhosSite:P0810422 SWISS-2DPAGE:P05055 PaxDb:P05055 PRIDE:P05055
EnsemblBacteria:EBESCT00000001884 EnsemblBacteria:EBESCT00000002008
EnsemblBacteria:EBESCT00000002009 EnsemblBacteria:EBESCT00000002010
EnsemblBacteria:EBESCT00000015515 GeneID:12933437 GeneID:947672
KEGG:ecj:Y75_p3086 KEGG:eco:b3164 PATRIC:32121746 EchoBASE:EB0736
EcoGene:EG10743 BioCyc:EcoCyc:EG10743-MONOMER
BioCyc:ECOL316407:JW5851-MONOMER BioCyc:MetaCyc:EG10743-MONOMER
EvolutionaryTrace:P05055 Genevestigator:P05055 Uniprot:P05055
Length = 711
Score = 120 (47.3 bits), Expect = 0.00019, P = 0.00019
Identities = 44/166 (26%), Positives = 73/166 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR + +R L +L R HGSA +++G+T+ L A G + E +
Sbjct: 315 RIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVIIQVV 109
+ P TG +G P++ EI R L +L + P+ T V+ ++
Sbjct: 375 TFLFHYNFPPYSVGETGMVGSPKRR-EIGHGR-LAKRGVLAVMPDMDKFPYTVRVVSEIT 432
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG--YCIL 153
+G+ ++ A AL+DAG+P+K I + G Y +L
Sbjct: 433 ESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVL 478
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 40/160 (25%), Positives = 72/160 (45%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKK-----NENPE 58
R DGR+P +R L +L R HGSA +++G+T+ L A G + ++ + +
Sbjct: 315 RIDGRDPESIRALDVMTGVLPRTHGSAVFTRGETQALVTATLGTQRDAQRLDTLMGDKTD 374
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEIILKRTLQSICILTINPNT-----TTSVIIQVV 109
+ + P TG +G P++ EI R L +L + P+ V+ ++
Sbjct: 375 PFMLHYNFPPYCVGETGFVGSPKRR-EIGHGR-LAKRGMLAVMPSLEEFPYAVRVVSEIT 432
Query: 110 HDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149
+G+ ++ AL+DAG+P+K I + G
Sbjct: 433 ESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEG 472
>TIGR_CMR|DET_0970 [details] [associations]
symbol:DET_0970 "polyribonucleotide
nucleotidyltransferase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 Pfam:PF03725 SUPFAM:SSF55666
HSSP:Q91WJ8 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_181693.1 ProteinModelPortal:Q3Z7V6
SMR:Q3Z7V6 STRING:Q3Z7V6 GeneID:3229678 KEGG:det:DET0970
PATRIC:21608989 BioCyc:DETH243164:GJNF-971-MONOMER Uniprot:Q3Z7V6
Length = 720
Score = 116 (45.9 bits), Expect = 0.00054, P = 0.00054
Identities = 44/170 (25%), Positives = 80/170 (47%)
Query: 1 MEVD-RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTKK----- 53
+E D R +GR QLR L IL R HGSA +++GDT+V+A G ++
Sbjct: 307 LEKDIRVNGRGIKQLRQLDAETGILPRVHGSALFTRGDTQVMAITTLGSLQEAQQLDGLS 366
Query: 54 NENPEKASIEVIWKP-------RTGQIGKPEKEYEIILKRTLQSICILTINPNTTTSVII 106
E+ ++ + + P R+G G+ E + + +R L + T ++
Sbjct: 367 AEDTKRFMLHYNFAPFSTGEVKRSGSPGRREIGHGALAERALVPVLPTPEEFPYTIRMVA 426
Query: 107 QVVHDDGALLPCAINAACAALVDAGIPMKHLA--VAICCCSAESG-YCIL 153
VV G+ ++ ++ +L+DAG+P+K ++I + E+ YC +
Sbjct: 427 DVVGSSGSTSMGSVCSSSLSLMDAGVPVKKAVAGISIGLITGENDTYCTI 476
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 115 (45.5 bits), Expect = 0.00068, P = 0.00068
Identities = 34/144 (23%), Positives = 71/144 (49%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL-AAVYGPKAGTKK-----NENPE 58
R DGR+ +RP++ S+L RAHGSA +++G+T+ L A+ G ++ E +
Sbjct: 313 RIDGRDTTTIRPISIEVSMLPRAHGSALFTRGETQALVASTLGTSIDEQRIDSLYGETRK 372
Query: 59 KASIEVIWKP-RTGQI------GKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
+ + + P G+ G+ E + ++ +R L+ + + T ++ ++
Sbjct: 373 RFLLHYNFPPFSVGETSFRLAPGRREIGHGMLAERALERVVPKHEDFPYTIRIVSDILES 432
Query: 112 DGALLPCAINAACAALVDAGIPMK 135
+G+ + A++DAG+P+K
Sbjct: 433 NGSSSMATVCGGALAMMDAGVPIK 456
>UNIPROTKB|Q9KU76 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004654 "polyribonucleotide nucleotidyltransferase activity"
evidence=ISS] [GO:0006401 "RNA catabolic process" evidence=ISS]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR009019 InterPro:IPR012162
InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575 Pfam:PF03726
PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322
InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401
GO:GO:0006396 GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814
Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 40/165 (24%), Positives = 76/165 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR + +R L +L R HGSA +++G+T+ L A G + + E +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG +G P++ EI + KR + ++ T V+ ++
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRR-EIGHGRLAKRGIAAVMPSPEEFPYTVRVVSEITE 434
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ ++ + AL+DAG+P+K +A+ E+ + +L
Sbjct: 435 SNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
>TIGR_CMR|VC_0647 [details] [associations]
symbol:VC_0647 "polyribonucleotide nucleotidyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006401 "RNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR009019 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0006401 GO:GO:0006396
GO:GO:0006402 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 HSSP:P05055 SUPFAM:SSF54814 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962 GO:GO:0004654
Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 PIR:E82298
RefSeq:NP_230296.1 ProteinModelPortal:Q9KU76 SMR:Q9KU76
PRIDE:Q9KU76 DNASU:2615437 GeneID:2615437 KEGG:vch:VC0647
PATRIC:20080407 Uniprot:Q9KU76
Length = 709
Score = 115 (45.5 bits), Expect = 0.00069, P = 0.00069
Identities = 40/165 (24%), Positives = 76/165 (46%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLA-AVYGPKAGTK-----KNENPE 58
R DGR + +R L +L R HGSA +++G+T+ L A G + + E +
Sbjct: 316 RIDGREKDMVRALDVRTGVLPRTHGSALFTRGETQALVTATLGTQRDAQIIDELTGEKKD 375
Query: 59 KASIEVIWKP----RTGQIGKPEKEYEI----ILKRTLQSICILTINPNTTTSVIIQVVH 110
+ + P TG +G P++ EI + KR + ++ T V+ ++
Sbjct: 376 HFLLHYNFPPYCVGETGFVGSPKRR-EIGHGRLAKRGIAAVMPSPEEFPYTVRVVSEITE 434
Query: 111 DDGALLPCAINAACAALVDAGIPMKH--LAVAICCCSAESGYCIL 153
+G+ ++ + AL+DAG+P+K +A+ E+ + +L
Sbjct: 435 SNGSSSMASVCGSSLALMDAGVPIKASVAGIAMGLVKEENDFVVL 479
>TIGR_CMR|GSU_1795 [details] [associations]
symbol:GSU_1795 "ribonuclease PH" species:243231
"Geobacter sulfurreducens PCA" [GO:0004540 "ribonuclease activity"
evidence=ISS] [GO:0008033 "tRNA processing" evidence=ISS]
InterPro:IPR002381 InterPro:IPR001247 InterPro:IPR015847
Pfam:PF01138 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
GO:GO:0000049 InterPro:IPR020568 SUPFAM:SSF54211 eggNOG:COG0689
Pfam:PF03725 SUPFAM:SSF55666 InterPro:IPR018336 PROSITE:PS01277
GO:GO:0004549 HOGENOM:HOG000229516 KO:K00989 OMA:MLPRATG
ProtClustDB:PRK00173 GO:GO:0009022 HAMAP:MF_00564
TIGRFAMs:TIGR01966 RefSeq:NP_952845.1 ProteinModelPortal:Q74C79
SMR:Q74C79 GeneID:2686347 KEGG:gsu:GSU1795 PATRIC:22026445
BioCyc:GSUL243231:GH27-1829-MONOMER Uniprot:Q74C79
Length = 238
Score = 107 (42.7 bits), Expect = 0.00091, P = 0.00091
Identities = 40/139 (28%), Positives = 61/139 (43%)
Query: 5 RADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVL--AAVYGPKAGTKKNENPEKASI 62
R+DGRNP LR + + L A GS GDTKVL A+V + + +
Sbjct: 2 RSDGRNPASLRNIRITRKYLKHAEGSVLVEFGDTKVLCTASVEESVPPFLRGKGGGWVTA 61
Query: 63 EVIWKPRT-----------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHD 111
E PR G++G E + ++ R+L+++ LT+ + + V+
Sbjct: 62 EYSMLPRATHTRSPREAAKGKLGGRTHEIQRLIGRSLRAVTDLTLLGERSVLIDCDVLQA 121
Query: 112 DGALLPCAINAACAALVDA 130
DG +I A ALVDA
Sbjct: 122 DGGTRTASITGAYVALVDA 140
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.133 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 243 243 0.00097 113 3 11 22 0.44 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 609 (65 KB)
Total size of DFA: 191 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.75u 0.15s 20.90t Elapsed: 00:00:01
Total cpu time: 20.76u 0.15s 20.91t Elapsed: 00:00:01
Start: Thu May 9 23:13:34 2013 End: Thu May 9 23:13:35 2013