Query 026142
Match_columns 243
No_of_seqs 160 out of 1399
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:33:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026142.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026142hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hkm_A OS03G0854200 protein; R 100.0 4.7E-56 1.6E-60 377.7 25.6 239 1-240 1-239 (246)
2 2nn6_D Exosome complex exonucl 100.0 4E-52 1.4E-56 352.3 27.7 219 1-238 13-237 (237)
3 2wnr_B Probable exosome comple 100.0 7.6E-49 2.6E-53 332.8 27.7 216 2-237 14-240 (240)
4 2po1_A Probable exosome comple 100.0 9.4E-49 3.2E-53 333.9 26.6 220 2-241 14-244 (249)
5 3m7n_D Probable exosome comple 100.0 1.7E-48 5.8E-53 333.3 26.8 219 2-236 14-242 (258)
6 2je6_B RRP41, exosome complex 100.0 6.9E-48 2.4E-52 328.8 28.0 218 2-239 18-246 (250)
7 2wp8_B Exosome complex compone 100.0 6.5E-48 2.2E-52 328.2 27.5 220 2-241 10-242 (246)
8 2nn6_B Exosome complex exonucl 100.0 9.9E-48 3.4E-52 327.6 27.3 218 2-239 14-244 (249)
9 3dd6_A Ribonuclease PH; exorib 100.0 3.3E-46 1.1E-50 318.8 25.3 216 3-236 10-252 (255)
10 3b4t_A Ribonuclease PH; RNAse, 100.0 6.6E-46 2.3E-50 318.5 26.5 221 2-240 4-251 (262)
11 2nn6_F MTR3, exosome component 100.0 3.3E-47 1.1E-51 328.3 17.4 223 2-242 24-270 (272)
12 1oys_A Ribonuclease PH; transf 100.0 3.8E-46 1.3E-50 317.1 21.7 216 4-237 1-243 (245)
13 1r6l_A Ribonuclease PH; beta-a 100.0 2.3E-45 7.7E-50 311.3 25.8 212 4-233 2-239 (239)
14 2po1_B Probable exosome comple 100.0 2.6E-45 8.9E-50 317.2 26.6 214 2-235 24-276 (277)
15 1udn_A Ribonuclease PH, RNAse 100.0 1.1E-45 3.9E-50 315.8 23.1 212 4-233 1-238 (255)
16 3m7n_G Probable exosome comple 100.0 3.9E-45 1.3E-49 313.3 22.5 209 2-229 20-258 (259)
17 2wnr_A Probable exosome comple 100.0 2.7E-44 9.1E-49 310.0 25.4 211 2-232 22-270 (271)
18 2je6_A RRP42, exosome complex 100.0 2.6E-44 8.7E-49 311.0 25.1 212 2-232 27-276 (277)
19 2nn6_C Exosome complex exonucl 100.0 6.8E-44 2.3E-48 308.5 23.6 215 2-235 22-276 (278)
20 2nn6_A Polymyositis/scleroderm 100.0 1.7E-43 5.7E-48 314.8 23.4 217 2-239 37-294 (358)
21 2wp8_A Exosome complex compone 100.0 2.9E-43 1E-47 308.2 21.7 218 2-240 21-292 (305)
22 3krn_A Protein C14A4.5, confir 100.0 2E-46 7E-51 314.2 0.4 208 11-240 2-214 (222)
23 2nn6_E Exosome complex exonucl 100.0 3.1E-43 1.1E-47 308.0 20.5 219 2-239 34-296 (305)
24 3gme_A Polyribonucleotide nucl 100.0 3.3E-40 1.1E-44 305.3 25.3 216 2-234 312-544 (549)
25 3u1k_A Polyribonucleotide nucl 100.0 1E-39 3.5E-44 307.4 24.6 214 2-234 316-557 (630)
26 1e3p_A Guanosine pentaphosphat 100.0 1.1E-39 3.7E-44 312.3 24.3 216 2-234 353-589 (757)
27 3cdi_A Polynucleotide phosphor 100.0 1.6E-39 5.5E-44 310.1 24.3 217 2-235 318-551 (723)
28 4aid_A Polyribonucleotide nucl 100.0 2.9E-39 9.8E-44 307.2 22.6 216 2-234 328-560 (726)
29 3u1k_A Polyribonucleotide nucl 100.0 2.6E-32 8.7E-37 257.2 24.3 200 13-237 13-230 (630)
30 3cdi_A Polynucleotide phosphor 100.0 4.6E-29 1.6E-33 238.2 21.9 198 15-237 20-235 (723)
31 3gme_A Polyribonucleotide nucl 100.0 1E-28 3.4E-33 228.7 21.4 200 13-237 12-229 (549)
32 4aid_A Polyribonucleotide nucl 100.0 1.8E-28 6.2E-33 233.2 23.7 200 13-237 26-243 (726)
33 1e3p_A Guanosine pentaphosphat 100.0 2.9E-27 1E-31 226.5 26.7 212 14-236 36-269 (757)
34 2k9i_A Plasmid PRN1, complete 43.5 14 0.00049 22.1 2.2 37 203-239 15-51 (55)
35 1xpp_A TA1416, DNA-directed RN 33.6 85 0.0029 22.5 5.3 47 195-241 64-110 (115)
36 2ba3_A NIKA; dimer, bacterial 20.2 66 0.0023 18.9 2.3 30 203-232 21-50 (51)
No 1
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=100.00 E-value=4.7e-56 Score=377.66 Aligned_cols=239 Identities=67% Similarity=1.051 Sum_probs=200.7
Q ss_pred CCCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCCCCCCCCchHHH
Q 026142 1 MEVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEY 80 (243)
Q Consensus 1 ~~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~l 80 (243)
|+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+.+|+.+.|+++.++|+|+|+.|+++++++++
T Consensus 1 meg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~~~~~~P~~g~~~~~~~e~ 80 (246)
T 3hkm_A 1 MEESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASIEVVWKPMTGQIGKQEKEY 80 (246)
T ss_dssp ----CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEEEEEEECSSSCCCTTHHHH
T ss_pred CCCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEEEEEeCCCCCCCChhHHHH
Confidence 99999999999999999999999999999999999999999999999888888889999999999999889899999999
Q ss_pred HHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCHHHH
Q 026142 81 EIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEE 160 (243)
Q Consensus 81 ~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~~Ee 160 (243)
+++|+|+|+++|+.++||+|.|+|+++||++|||+++|++||+++||+++||||+++|+|++++++.++.+|+|||..|+
T Consensus 81 ~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG~~~~aai~aa~~AL~dagiP~~~~v~avs~g~~~~g~~llDpt~~Ee 160 (246)
T 3hkm_A 81 EMTLKRTLQSICLLTVHPNTTTSVILQVVGNDGSLLPCAINACCAALVFAGIPLKHLAVAIGCGVLEDGEVILDTNKAEE 160 (246)
T ss_dssp HHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEECTTSCEEESCCHHHH
T ss_pred HHHHHHHHHHhcCccCCCcEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEEECCEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999878899999999999
Q ss_pred hhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 026142 161 QKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240 (243)
Q Consensus 161 ~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~~ 240 (243)
..+++.++++++.+++|.++|.+....+.| ..+.|++...|.++.+++.+|+++|.+++++|.++++++|+++..+++.
T Consensus 161 ~~~~~~~~va~~~~~i~~lq~~g~~~~~~~-~~~~i~~~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~~ 239 (246)
T 3hkm_A 161 QQLKSFAHLVFPNSRKSASSKEPNQKEEDS-ERGLITSITHGVMSEEDYFSCIERGLAASSRISDFMRTTLQKQAPGDVL 239 (246)
T ss_dssp TTCSEEEEEEEEC---------------------CCCEEEEECEEHHHHHHHHHHHHHHHHHHHHHHHTTTC--------
T ss_pred hcCCeeEEEEEeCCceEEEeeccccccccc-ccceeeeeccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Confidence 999999999999889999988532222222 4567777778899999999999999999999999999999999988864
No 2
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=4e-52 Score=352.34 Aligned_cols=219 Identities=37% Similarity=0.629 Sum_probs=188.3
Q ss_pred CCCCCCCCCCCC----CCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCCCCCCCCc
Q 026142 1 MEVDRADGRNPN----QLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKP 76 (243)
Q Consensus 1 ~~~~R~DGR~~~----e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~~~~~~~~ 76 (243)
++|+|+|||+++ |+|++.+++|++++++|||+|++|+|+|+|+|+||.+.+|+.+.|++|+|+++|.|+.|.++++
T Consensus 13 ~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~~p~~g~~~~~ 92 (237)
T 2nn6_D 13 IRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVILRPKIGLPGVA 92 (237)
T ss_dssp --------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEEECSSSCCCHH
T ss_pred ccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEecCCCCCCCcc
Confidence 468999999999 9999999999999999999999999999999999988788888999999999999998888888
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCC
Q 026142 77 EKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPT 156 (243)
Q Consensus 77 ~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt 156 (243)
+++++++|+++|+++|+.++||+|.|+|+++||++|||+++|++||+++||+|+||||+++|++++++++.++.+|+||+
T Consensus 93 e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~~~~~~~llDp~ 172 (237)
T 2nn6_D 93 EKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPT 172 (237)
T ss_dssp HHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCEEEEEEEECTTCCEEESCC
T ss_pred HHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCCcHHHHHHHHHHHHHHHcCCCcccCeeeEEEEEecCCcEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986789999999
Q ss_pred HHHHhhccccEEEEeeCCc--cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026142 157 KLEEQKMKGFAYLVFPNSI--LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 157 ~~Ee~~~~~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~ 234 (243)
..||+.+.+.++++++.++ ++.+ ...|.++.++|.+|+++|.+++++|+++++++++++
T Consensus 173 ~~Ee~~~~~~~~v~~~~~~~~i~~l-------------------q~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~ 233 (237)
T 2nn6_D 173 SKQEKEARAVLTFALDSVERKLLMS-------------------STKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRR 233 (237)
T ss_dssp HHHHHHCSEEEEEEEETTTCCCCEE-------------------EEEESCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCceEEEEcCCCCCEEEE-------------------EEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998653 3332 346789999999999999999999999999999998
Q ss_pred cccc
Q 026142 235 LPGD 238 (243)
Q Consensus 235 ~~~~ 238 (243)
.+++
T Consensus 234 ~~~~ 237 (237)
T 2nn6_D 234 YSKS 237 (237)
T ss_dssp TCC-
T ss_pred ccCC
Confidence 7653
No 3
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=7.6e-49 Score=332.82 Aligned_cols=216 Identities=27% Similarity=0.442 Sum_probs=190.7
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCC-CCCCCCceEEEEEe--cCCC------CC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIEVIW--KPRT------GQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~-~~~~~~~~~l~v~~--~p~~------~~ 72 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+..| ..+.|++|.|.++| .|++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~~ 93 (240)
T 2wnr_B 14 PSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERKRPG 93 (240)
T ss_dssp -CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCCCSS
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCccCCC
Confidence 589999999999999999999999999999999999999999999887655 45789999987765 4753 23
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026142 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++++++++|+++|++.+.++.||+|.|+|+++||++|||+++|++||+++||+|+|+||+++|+++|++++ ++.++
T Consensus 94 ~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG~~~~a~i~aa~~AL~da~iP~~~~v~avs~g~~-~~~~l 172 (240)
T 2wnr_B 94 PDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEGGTRCAGITAASVALADAGIPMRDMVVACAAGKV-GDQVV 172 (240)
T ss_dssp CCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEES-SSSEE
T ss_pred CChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCccccceeeEEEEEE-CCEEE
Confidence 45568899999999999999899999999999999999999999999999999999999999999999999998 77999
Q ss_pred eCCCHHHHhhccccEEEEe-eCCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 153 LDPTKLEEQKMKGFAYLVF-PNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~-~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~ 230 (243)
+|||..||..+++.++|++ +..+ ++.+ ...|.++.+++.+|+++|.+++++|++.++++
T Consensus 173 ~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~l-------------------q~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 233 (240)
T 2wnr_B 173 LDLSEEEDKEGQADVPVAILPRTREITLL-------------------QSDGNLTPEEFERALDLAVEGCLRIHEVQKEA 233 (240)
T ss_dssp ESCCSHHHHSCSEEEEEEEETTTTEEEEE-------------------EEEECBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHhccCCceEEEEEECCCCCEEEE-------------------EEEcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 4333 3333 34678999999999999999999999999999
Q ss_pred HHhhccc
Q 026142 231 LQSKLPG 237 (243)
Q Consensus 231 l~~~~~~ 237 (243)
++++.++
T Consensus 234 l~~~~~~ 240 (240)
T 2wnr_B 234 LRKRYGE 240 (240)
T ss_dssp HHC----
T ss_pred HHHhhcC
Confidence 9987653
No 4
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=9.4e-49 Score=333.90 Aligned_cols=220 Identities=27% Similarity=0.408 Sum_probs=197.1
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCC-CCCCCCceEEEEEec--CCC------CC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIEVIWK--PRT------GQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~-~~~~~~~~~l~v~~~--p~~------~~ 72 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+..| ..+.|++|.|.++|. |++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~ 93 (249)
T 2po1_A 14 NGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPFSVEERKKPG 93 (249)
T ss_dssp SSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGGGSSSCCCSS
T ss_pred cCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCcccccccCCC
Confidence 589999999999999999999999999999999999999999999887665 567899999887764 532 22
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026142 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++.+++++|+++|++.+.++.||+|.|+|+++||++|||+++|+++|+++||+|+||||+++|+++|++++ ++.++
T Consensus 94 ~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG~~~~aai~aa~~AL~da~iP~~~~v~avs~g~~-~~~~l 172 (249)
T 2po1_A 94 PDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKI-EGEIV 172 (249)
T ss_dssp CCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE-TTEEE
T ss_pred CCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE-CCEEE
Confidence 45567899999999999999889999999999999999999999999999999999999999999999999998 88999
Q ss_pred eCCCHHHHhhccccEEEEe-eCCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 153 LDPTKLEEQKMKGFAYLVF-PNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~-~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~ 230 (243)
+|||..||..+++.++|++ +..+ ++.++ ..|.++.+++.+|+++|.+++++++++++++
T Consensus 173 ~Dp~~~Ee~~~~~~l~va~~~~~~~i~~~~-------------------~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 233 (249)
T 2po1_A 173 LDLNKEEDNYGEADVPVAIMPLKNDITLLQ-------------------MDGYLTKDEFIEAVKLAIKGAKAVYQKQREA 233 (249)
T ss_dssp ESCCHHHHHTCSEEEEEEEEGGGTEEEEEC-------------------CEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCcHHHhccCCceEEEEEECCCCCEEEEE-------------------EEcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 4433 44433 3568999999999999999999999999999
Q ss_pred HHhhccccccc
Q 026142 231 LQSKLPGDLSK 241 (243)
Q Consensus 231 l~~~~~~~~~~ 241 (243)
++++..++..+
T Consensus 234 l~~~~~~~~~~ 244 (249)
T 2po1_A 234 LKEKYLKIAQE 244 (249)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHhhhhh
Confidence 99988776654
No 5
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=100.00 E-value=1.7e-48 Score=333.32 Aligned_cols=219 Identities=26% Similarity=0.408 Sum_probs=193.2
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCC-CCCCCceEEEEEe--cCCC------CC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK-NENPEKASIEVIW--KPRT------GQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~-~~~~~~~~l~v~~--~p~~------~~ 72 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+..|. .+.|++|+|.++| .|++ +.
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~~ 93 (258)
T 3m7n_D 14 DGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRPG 93 (258)
T ss_dssp TTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCSS
T ss_pred cCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCCC
Confidence 5899999999999999999999999999999999999999999999876654 4789999988765 4532 23
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026142 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++.+++++|+|+|++++.++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|++++++++ ++.+|
T Consensus 94 ~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG~~~~Aai~aa~lAL~dagiP~~~~v~avsvg~i-~~~~l 172 (258)
T 3m7n_D 94 PDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADAGSRTACLNAASVALVDAGVPMKGMITSVAVGKA-DGQLV 172 (258)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCTTHHHHHHHHHHHHHHHTTCCBSSEEEEEEEEEE-TTEEE
T ss_pred CCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEE-CCEEE
Confidence 45567899999999999999889999999999999999999999999999999999999999999999999998 88999
Q ss_pred eCCCHHHHhhccccEEEEe-eCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 153 LDPTKLEEQKMKGFAYLVF-PNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~-~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l 231 (243)
+|||..|+..+++.++|++ +..+. ..+.+.++..|.++.+++.+|+++|.+++++|++++++++
T Consensus 173 lDpt~~Ee~~~~~d~~va~~~~~~~---------------~~~I~~lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~l 237 (258)
T 3m7n_D 173 LDPMKEEDNFGEADMPFAFLIRNGK---------------IESIALLQMDGRMTRDEVKQAIELAKKGALQIYEMQREAI 237 (258)
T ss_dssp ESCCHHHHHHSSEEEEEEEEEETTE---------------EEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCCHHHHhccCceEEEEEEcCCCC---------------CCCEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 54300 0122223346799999999999999999999999999999
Q ss_pred Hhhcc
Q 026142 232 QSKLP 236 (243)
Q Consensus 232 ~~~~~ 236 (243)
+++..
T Consensus 238 ~~~~~ 242 (258)
T 3m7n_D 238 LRRYI 242 (258)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98654
No 6
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=100.00 E-value=6.9e-48 Score=328.78 Aligned_cols=218 Identities=27% Similarity=0.406 Sum_probs=193.2
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCC-CCCCCCceEEEEEe--cCCC------CC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNENPEKASIEVIW--KPRT------GQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~-~~~~~~~~~l~v~~--~p~~------~~ 72 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+..| ..+.|+++.|.|+| .|++ +.
T Consensus 18 ~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~g~ 97 (250)
T 2je6_B 18 DGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMTPFSTDERKNPA 97 (250)
T ss_dssp TSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEECTTSSSSCCCSS
T ss_pred CCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeCCCccCCccCCC
Confidence 589999999999999999999999999999999999999999999887554 55678999988776 4542 23
Q ss_pred CCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEE
Q 026142 73 IGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCI 152 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~l 152 (243)
+++++++++++|+++|++++.++.||+|.|+|+++||++|||+++|+++|+++||+++||||+++|++++++++ ++.+|
T Consensus 98 ~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~v~avsvg~~-~~~~l 176 (250)
T 2je6_B 98 PSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADAGSRLVSLMAASLALADAGIPMRDLIAGVAVGKA-DGVII 176 (250)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCBSSCCEEEEEEEE-TTEEE
T ss_pred CChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCCccCceEEEEEEEE-CCEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999997 88999
Q ss_pred eCCCHHHHhhccccEEEEee-CCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 153 LDPTKLEEQKMKGFAYLVFP-NSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRS 230 (243)
Q Consensus 153 vDPt~~Ee~~~~~~~~v~~~-~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~ 230 (243)
+|||..|+..+++.++|++. ..+ ++. ++..|.++.+++.+|+++|.+++++++++++++
T Consensus 177 ~Dpt~~Ee~~~~~~l~va~~~~~~~i~~-------------------v~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~~~ 237 (250)
T 2je6_B 177 LDLNETEAMWGEADMPIAMMPSLNQVTL-------------------FQLNGSMTPDEFRQAFDLAVKGINIIYNLEREA 237 (250)
T ss_dssp ESCCHHHHHHSSEEEEEEEEGGGTEEEE-------------------EEEEECBCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCHHHHhcCCceEEEEEECCCCCEEE-------------------EEEEcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999984 333 332 334678999999999999999999999999999
Q ss_pred HHhhccccc
Q 026142 231 LQSKLPGDL 239 (243)
Q Consensus 231 l~~~~~~~~ 239 (243)
++++..++.
T Consensus 238 l~~~~~~~~ 246 (250)
T 2je6_B 238 LKSKYVEFK 246 (250)
T ss_dssp HHGGGC---
T ss_pred HHHHHhhhh
Confidence 999877653
No 7
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-48 Score=328.22 Aligned_cols=220 Identities=26% Similarity=0.321 Sum_probs=189.0
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCC-CceEEEEeCCeEEEEEEEcCccC-CCCCCCCCceEEEEEe--cCCC-------
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRA-HGSASWSQGDTKVLAAVYGPKAG-TKKNENPEKASIEVIW--KPRT------- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a-~GSa~v~~G~T~Vi~~V~gp~~~-~~~~~~~~~~~l~v~~--~p~~------- 70 (243)
+|+|+|||+++|+|++.+++|.++++ +|||+|++|+|+|+|+|+||.+. +|..+.|+++.|.|+| .|++
T Consensus 10 ~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~r 89 (246)
T 2wp8_B 10 EGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKS 89 (246)
T ss_dssp TSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC----------
T ss_pred cCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeCCccccccccc
Confidence 68999999999999999999999999 99999999999999999998774 3456789999998776 4532
Q ss_pred -CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCC
Q 026142 71 -GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESG 149 (243)
Q Consensus 71 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~ 149 (243)
+.+++++.+++++|+++|++++.++.||+|.|+|+++||++|||+++|++||+++||+++||||+++|+++++|++ ++
T Consensus 90 ~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~aai~aa~~AL~~a~iP~~~~v~avs~g~~-~~ 168 (246)
T 2wp8_B 90 SHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLY-DT 168 (246)
T ss_dssp ----CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBSSCEEEEEEEEE-TT
T ss_pred CCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCcccCceeEEEEEEE-CC
Confidence 2234567899999999999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred eEEeCCCHHHHhhccccEEEEee-CCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 150 YCILDPTKLEEQKMKGFAYLVFP-NSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228 (243)
Q Consensus 150 ~~lvDPt~~Ee~~~~~~~~v~~~-~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~ 228 (243)
.+++|||..|+ .+++.++|++. ..+ +.+.++..|.++.+++.+|+++|.+++++|+++++
T Consensus 169 ~~l~Dp~~~Ee-~~~~~l~v~~~~~~~------------------~i~~i~~~g~~~~~~l~~~l~~A~~~~~~i~~~~~ 229 (246)
T 2wp8_B 169 TPLLDTNSLEE-NAMSTVTLGVVGKSE------------------KLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMD 229 (246)
T ss_dssp EEESSCCHHHH-HHSEEEEEEEETTSS------------------CEEEEEECSCEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCchhh-ccCceEEEEEeCCCC------------------CEEEEEecCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999985 333 12223346799999999999999999999999999
Q ss_pred HHHHhhccccccc
Q 026142 229 RSLQSKLPGDLSK 241 (243)
Q Consensus 229 ~~l~~~~~~~~~~ 241 (243)
++++++..+++..
T Consensus 230 ~~l~~~~~~~~~~ 242 (246)
T 2wp8_B 230 EELRKHAQKRVSN 242 (246)
T ss_dssp HHHHHHHHCC---
T ss_pred HHHHHHHHhhhhh
Confidence 9999998877654
No 8
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=9.9e-48 Score=327.59 Aligned_cols=218 Identities=24% Similarity=0.371 Sum_probs=192.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCC--CCCCCceEEEEEe--cCCC-------
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKK--NENPEKASIEVIW--KPRT------- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~--~~~~~~~~l~v~~--~p~~------- 70 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+||.+.+.. .+.|++++|.++| .|++
T Consensus 14 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~a~~~~~~~ 93 (249)
T 2nn6_B 14 QGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRR 93 (249)
T ss_dssp TTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCT
T ss_pred CCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCCcccccccC
Confidence 5899999999999999999999999999999999999999999998664322 3578999887765 4632
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCe
Q 026142 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGY 150 (243)
Q Consensus 71 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~ 150 (243)
+.+++++.+++++|+++|++++.++.||+|.|+|+++||++|||+++|++||+++||+|+||||+++|+++|++++ ++.
T Consensus 94 ~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG~~~~A~i~aa~~AL~da~iPl~~~v~avs~g~~-~~~ 172 (249)
T 2nn6_B 94 PHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV-DGT 172 (249)
T ss_dssp TTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCSSCCEEEEEEEE-TTE
T ss_pred CCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCCCHHHHHHHHHHHHHHhcCCcccCCeeeEEEEEE-CCe
Confidence 2234567899999999999999999999999999999999999999999999999999999999999999999998 889
Q ss_pred EEeCCCHHHHhhccccEEEEee-CCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 151 CILDPTKLEEQKMKGFAYLVFP-NSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLR 228 (243)
Q Consensus 151 ~lvDPt~~Ee~~~~~~~~v~~~-~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~ 228 (243)
+|+|||..||..+++.++|+++ ..+ ++. +...|.++.+++.+|+++|.+++++|+++++
T Consensus 173 ~l~Dp~~~Ee~~~~~~~~v~~~~~~~~i~~-------------------lq~~g~~~~~~l~~~l~~A~~~~~~i~~~~~ 233 (249)
T 2nn6_B 173 ALADLSHVEEAAGGPQLALALLPASGQIAL-------------------LEMDARLHEDHLERVLEAAAQAARDVHTLLD 233 (249)
T ss_dssp EEESCCHHHHTSSCCCEEEEEETTTTEEEE-------------------EEECSCCBTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCChHHhccCCcEEEEEEECCCCCEEE-------------------EEEECCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 433 333 3346899999999999999999999999999
Q ss_pred HHHHhhccccc
Q 026142 229 RSLQSKLPGDL 239 (243)
Q Consensus 229 ~~l~~~~~~~~ 239 (243)
++++++..+..
T Consensus 234 ~~l~~~~~~~~ 244 (249)
T 2nn6_B 234 RVVRQHVREAS 244 (249)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 99998876543
No 9
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=100.00 E-value=3.3e-46 Score=318.78 Aligned_cols=216 Identities=20% Similarity=0.229 Sum_probs=190.6
Q ss_pred CCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC----------
Q 026142 3 VDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT---------- 70 (243)
Q Consensus 3 ~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~---------- 70 (243)
.+|.|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+++...|++|+|.|+| .|++
T Consensus 10 ~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~~Re~~ 89 (255)
T 3dd6_A 10 HMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRTIRESS 89 (255)
T ss_dssp -CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCCCCCCC
T ss_pred ccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCccccccccccc
Confidence 5799999999999999999999999999999999999999999976654566789999988776 4632
Q ss_pred -CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHc-----------CCCCCCce
Q 026142 71 -GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA-----------GIPMKHLA 138 (243)
Q Consensus 71 -~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a-----------~ip~~~~~ 138 (243)
|.+++++.+++++|+|+|++++.++.+|+|.|+|+++||++|||+++|++||+++||+++ +|||+++|
T Consensus 90 ~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~g~~~~iPl~~~v 169 (255)
T 3dd6_A 90 KGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADGGTRTASITGAYVAMVLAFEKLLQAEKVSKIPVKDYL 169 (255)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBSSCE
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhcCcccCCCccCce
Confidence 334455789999999999999998888999999999999999999999999999999999 99999999
Q ss_pred eEEEEEEecCCeEE-eCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEee-cCCCCHHHHHHHHHH
Q 026142 139 VAICCCSAESGYCI-LDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLER 215 (243)
Q Consensus 139 ~avt~~~~~~~~~l-vDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~-~g~~~~~~l~~~l~~ 215 (243)
++++++++ ++.++ +|||..|+..++..++|+++.++ +|.+++. + .+.++.+++.+|+++
T Consensus 170 ~avsvg~i-~g~~vllDpt~~Ee~~~~~~l~Va~~~~g~i~~vq~~-----------------g~~~~~~~~~l~~~l~~ 231 (255)
T 3dd6_A 170 AATSVGIV-EEQGVVLDLNYAEDSKADVDMNVIMTGKGQFVEVQGT-----------------GEEATFSRAQLNELLDA 231 (255)
T ss_dssp EEEEEEEE-TTTEEEESCCHHHHHTEEEEEEEEEETTSCEEEEEEE-----------------ESSSCCCHHHHHHHHHH
T ss_pred eEEEEEEE-CCEEEEeCCCHHHHhhcCceEEEEEcCCCcEEEEEec-----------------CCCCCcCHHHHHHHHHH
Confidence 99999998 66677 99999999999999999998876 5544321 2 358999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 026142 216 GRAASAKLSDFLRRSLQSKLP 236 (243)
Q Consensus 216 a~~~~~~l~~~i~~~l~~~~~ 236 (243)
|.+++++|++++++++++-..
T Consensus 232 A~~~~~~i~~~~~~~l~~~~~ 252 (255)
T 3dd6_A 232 AEQGIFQLIDIQKEALGDIVS 252 (255)
T ss_dssp HHHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987654
No 10
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.6e-46 Score=318.52 Aligned_cols=221 Identities=21% Similarity=0.230 Sum_probs=191.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC---------
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT--------- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~--------- 70 (243)
.|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...++....++++.|.|+| .|++
T Consensus 4 ~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re~ 83 (262)
T 3b4t_A 4 VSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRES 83 (262)
T ss_dssp -CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCHH
T ss_pred CCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCcccccccccc
Confidence 47899999999999999999999999999999999999999999966543333447889888776 4531
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHc------------CCCCCC
Q 026142 71 --GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDA------------GIPMKH 136 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a------------~ip~~~ 136 (243)
|.+++++++++++|+|+|++++.++.+|+|.|+|+++||++|||+++|++||+++||+++ +|||++
T Consensus 84 ~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~~ip~~~ 163 (262)
T 3b4t_A 84 VRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADGGTRTAAITGAYVALADAVTYLSAAGKLSDPRPLSC 163 (262)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCBCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhhhhhccCCccccCCcccC
Confidence 234556789999999999999998889999999999999999999999999999999999 999999
Q ss_pred ceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeec-CCCCHHHHHHHHH
Q 026142 137 LAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTH-GAMSVDDYFHCLE 214 (243)
Q Consensus 137 ~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~-g~~~~~~l~~~l~ 214 (243)
+|++++++++ ++.+|+|||.+|+..+++.++|+++.++ +|.+++. +. +.++.++|.+|++
T Consensus 164 ~v~avsvg~~-~g~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~-----------------g~~~~~~~~~l~~~l~ 225 (262)
T 3b4t_A 164 AIAAVSVGVV-DGRIRVDLPYEEDSRAEVDMNVVATDTGTLVEIQGT-----------------GEGATFARSTLDKLLD 225 (262)
T ss_dssp CEEEEEEEEE-TTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEC-----------------SSCCCBCHHHHHHHHH
T ss_pred ceeEEEEEEE-CCEEEECCCHHHHhccCceEEEEEcCCCCEEEEEee-----------------CCCCCcCHHHHHHHHH
Confidence 9999999998 8899999999999999999999998764 4444331 11 4899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccc
Q 026142 215 RGRAASAKLSDFLRRSLQSKLPGDLS 240 (243)
Q Consensus 215 ~a~~~~~~l~~~i~~~l~~~~~~~~~ 240 (243)
+|.+++++|+++++++++++..+...
T Consensus 226 ~A~~~~~~i~~~~~~~l~~~~~~~~~ 251 (262)
T 3b4t_A 226 MALGACDTLFAAQRDALALPYPGVLP 251 (262)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCSSCCC
T ss_pred HHHHHHHHHHHHHHHHHhcchhccCc
Confidence 99999999999999999988776543
No 11
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.3e-47 Score=328.30 Aligned_cols=223 Identities=26% Similarity=0.353 Sum_probs=187.9
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCC------------CCCceEEEEE--ec
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNE------------NPEKASIEVI--WK 67 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~------------~~~~~~l~v~--~~ 67 (243)
+++|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+||.+.++..+ .++++.+.|+ +.
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~ 103 (272)
T 2nn6_F 24 EEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRA 103 (272)
T ss_dssp -----CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEEC
T ss_pred cCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCcccccccccccccccccccCCCceEEEEEEEec
Confidence 579999999999999999999999999999999999999999999887666544 5677877665 46
Q ss_pred CCCC------CCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEE
Q 026142 68 PRTG------QIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAI 141 (243)
Q Consensus 68 p~~~------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~av 141 (243)
|++. .+++++++++++|+|+|++++.++.||+|.|+|+++||++||++++|++||+++||+++||||+++++++
T Consensus 104 p~a~~~~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~da~iP~~~~v~av 183 (272)
T 2nn6_F 104 PFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGC 183 (272)
T ss_dssp TTSSSSCCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSCCEEE
T ss_pred CCCcCCccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCCCHHHHHHHHHHHHHHHcCCcccCcEEEE
Confidence 7532 2344578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe--cCCeEEeCCCHHHHhhccccEEEEeeC-CccccccCCCcccCCCCcccceEEEeecCCCCH-HHHHHHHHHHH
Q 026142 142 CCCSA--ESGYCILDPTKLEEQKMKGFAYLVFPN-SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSV-DDYFHCLERGR 217 (243)
Q Consensus 142 t~~~~--~~~~~lvDPt~~Ee~~~~~~~~v~~~~-~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~-~~l~~~l~~a~ 217 (243)
+++++ .++.+|+|||..|+..+++.++|++.. .+ +++.++..|.++. ++|.+|+++|.
T Consensus 184 svg~~~~~~~~~llDpt~~Ee~~~~~~l~va~~~~~~------------------~I~~i~~~g~~~~~~~l~~~l~~A~ 245 (272)
T 2nn6_F 184 GLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLN------------------QVAGLLGSGEGGLTESWAEAVRLGL 245 (272)
T ss_dssp ECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTT------------------EEEEEEEECCSSCTTTTHHHHHHHH
T ss_pred EEEEeeccCCeEEeCCCHHHhccCCceEEEEEeCCCC------------------CEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99994 488999999999999999999999643 22 1222334678999 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccccccC
Q 026142 218 AASAKLSDFLRRSLQSKLPGDLSKA 242 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~~~~~~~~~~ 242 (243)
+++++|+++++++++++.++++..+
T Consensus 246 ~~~~~i~~~~~~~l~~~~~~~~~~~ 270 (272)
T 2nn6_F 246 EGCQRLYPVLQQSLVRAARRRGAAA 270 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 9999999999999999998887655
No 12
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=100.00 E-value=3.8e-46 Score=317.15 Aligned_cols=216 Identities=22% Similarity=0.234 Sum_probs=177.4
Q ss_pred CCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC-----------
Q 026142 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT----------- 70 (243)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~----------- 70 (243)
+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...++....+++|+|.++| .|++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccC
Confidence 499999999999999999999999999999999999999999976544445678899887765 4532
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC-----------CCCCCcee
Q 026142 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG-----------IPMKHLAV 139 (243)
Q Consensus 71 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~-----------ip~~~~~~ 139 (243)
|.++.++++++++|+++|++++.++.+|+|.|+|+++||++|||+++|++||+++||+|++ +||+++|+
T Consensus 81 G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~~~~~~~~~~~ipl~~~v~ 160 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADGGTRTASITGAFLAMAIAIGKLIKAGTIKTNPITDFLA 160 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCSCEE
T ss_pred CCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCCCHHHHHHHHHHHHHHhccchhcccCcccccCCCCcee
Confidence 2345567899999999999999888889999999999999999999999999999999999 99999999
Q ss_pred EEEEEEecCCeEE-eCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEee-cCCCCHHHHHHHHHHH
Q 026142 140 AICCCSAESGYCI-LDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERG 216 (243)
Q Consensus 140 avt~~~~~~~~~l-vDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~-~g~~~~~~l~~~l~~a 216 (243)
++|++++ ++.++ +|||..||..+++.++|+++.++ +|.+++. + .+.++.+++.+|+++|
T Consensus 161 avs~g~~-~g~~vl~Dp~~~Ee~~~~~~~~v~~~~~g~i~~iq~~-----------------g~~~~~~~~~l~~~l~~A 222 (245)
T 1oys_A 161 AISVGID-KEQGILLDLNYEEDSSAEVDMNVIMTGSGRFVELQGT-----------------GEEATFSREDLNGLLGLA 222 (245)
T ss_dssp EEEEEEE-TTTEEEESCCHHHHHHEEEEEEEEEETTSCEEEEEEE-----------------ESSCCCCHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEecCCHHHHhcCCCcEEEEEcCCCcEEEEEEe-----------------CCCCCcCHHHHHHHHHHH
Confidence 9999998 56666 99999999999999999998765 5544331 1 2589999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 026142 217 RAASAKLSDFLRRSLQSKLPG 237 (243)
Q Consensus 217 ~~~~~~l~~~i~~~l~~~~~~ 237 (243)
.+++++|+++++++++++..+
T Consensus 223 ~~~~~~i~~~~~~~l~~~~~~ 243 (245)
T 1oys_A 223 EKGIQELIDKQKEVLGDSLPE 243 (245)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999887543
No 13
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=100.00 E-value=2.3e-45 Score=311.29 Aligned_cols=212 Identities=23% Similarity=0.292 Sum_probs=184.2
Q ss_pred CCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC-----------
Q 026142 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT----------- 70 (243)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~----------- 70 (243)
.|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...++....|++|+|.|+| .|++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 399999999999999999999999999999999999999999976543333457888887765 5642
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC-----------CCCCCcee
Q 026142 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG-----------IPMKHLAV 139 (243)
Q Consensus 71 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~-----------ip~~~~~~ 139 (243)
|.++.++++++++|+++|++++.++.+|+|.|+|+++||++|||+++|++||+++||++++ +||+++|+
T Consensus 82 G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ip~~~~~~ 161 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADGGTRTASITGATVALIDALAVLKKRGALKGNPLKQMVA 161 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCBCCCEE
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhcchhcccCcccccCccCcee
Confidence 2344457899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEee-cCCCCHHHHHHHHHHHH
Q 026142 140 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERGR 217 (243)
Q Consensus 140 avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~-~g~~~~~~l~~~l~~a~ 217 (243)
++|++++ ++.+|+|||.+|+..+++.++|++++++ +|.+++. + .+.++.+++.+|+++|.
T Consensus 162 avs~g~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~~~~~-----------------g~~~~~~~~~l~~~l~~a~ 223 (239)
T 1r6l_A 162 AVSVGIY-QGVPVLDLDYLEDSAAETDLNVVMTDAGGFIEVQGT-----------------AEGAPFRPAELNAMLELAQ 223 (239)
T ss_dssp EEEEEEE-TTEEEESCCHHHHHHCSEEEEEEEETTSCEEEEEEE-----------------ESSSCCCHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEECCCHHHHhcCCceEEEEEeCCCCEEEEEEe-----------------CCCCCcCHHHHHHHHHHHH
Confidence 9999998 8899999999999999999999998765 4433321 2 35899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 026142 218 AASAKLSDFLRRSLQS 233 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~ 233 (243)
+++++|++++++++++
T Consensus 224 ~~~~~i~~~~~~~l~~ 239 (239)
T 1r6l_A 224 QGMQELFELQRAALAE 239 (239)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999999863
No 14
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=100.00 E-value=2.6e-45 Score=317.23 Aligned_cols=214 Identities=20% Similarity=0.299 Sum_probs=187.3
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCCCCCCceEEEEEe--cCCC------CC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKNENPEKASIEVIW--KPRT------GQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~~~~~~~l~v~~--~p~~------~~ 72 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|+ +|. .|+.+.|++|.|.++| .|++ +.
T Consensus 24 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~--~p~~~~~~~g~l~~~~~~~p~a~~~~~~g~ 101 (277)
T 2po1_B 24 EGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLG--EPFPDTPNMGVMTTNVELVPLASPTFEPGP 101 (277)
T ss_dssp TTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEE--CCCTTCTTSCEEEEEEEECGGGCTTCCSSS
T ss_pred cCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeccc--CCCCCCCCceEEEEEEEeCCCccccccCCC
Confidence 58999999999999999999999999999999999999999999 543 4566789999887765 4532 33
Q ss_pred CCCchHHHHHHHHHHHHhh--------hhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC-------------
Q 026142 73 IGKPEKEYEIILKRTLQSI--------CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG------------- 131 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~~--------~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~------------- 131 (243)
+++++.+++++|+++|++. |+.++..+|.|+|+++||++|||+++|+++|+++||+|++
T Consensus 102 ~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG~~~~a~i~aa~~AL~da~~p~~~~~~~~~~~ 181 (277)
T 2po1_B 102 PDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDGNLMDAIGIAAIAALLNARVPKVRYNEETGEV 181 (277)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEECTTTCCE
T ss_pred CChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCcEEEeCCCcee
Confidence 4556789999999999872 4455667899999999999999999999999999999999
Q ss_pred --------CCCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecC
Q 026142 132 --------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHG 202 (243)
Q Consensus 132 --------ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g 202 (243)
+||+++|+++|++++ ++.+++|||..||..+++.++|+++.++ ++.+++. +.|
T Consensus 182 ~~~~~~~~ipl~~~~~avs~g~~-~~~~l~Dp~~~Ee~~~~~~~~v~~~~~g~i~~lq~~-----------------g~~ 243 (277)
T 2po1_B 182 ETLDETEPLPVEKIPVPVTFAKI-GNILVVDPSLDEELVMDGKITITTDETGHISAVQKS-----------------EGG 243 (277)
T ss_dssp EEEEEEEECCBCCCCEEEEEEEE-TTEEEESCCHHHHHHCSEEEEEEECTTSCEEEEEEE-----------------SSC
T ss_pred ecccccccccccCceEEEEEEEE-CCEEEeCCCHHHHhhCCCcEEEEEcCCCCEEEEEcc-----------------CCC
Confidence 899999999999998 7799999999999999999999998765 5554431 236
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026142 203 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235 (243)
Q Consensus 203 ~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~ 235 (243)
.++.+++.+|+++|.+++++|+++++++|++..
T Consensus 244 ~~~~~~l~~~l~~A~~~~~~l~~~~~~~l~~~~ 276 (277)
T 2po1_B 244 AFKLEEVMYAVETAFKKAEEIRKLILEAVEKAK 276 (277)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999998754
No 15
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=100.00 E-value=1.1e-45 Score=315.84 Aligned_cols=212 Identities=24% Similarity=0.260 Sum_probs=186.6
Q ss_pred CCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC-----------
Q 026142 4 DRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT----------- 70 (243)
Q Consensus 4 ~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~----------- 70 (243)
+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...++....|++|+|.++| .|++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCC
Confidence 499999999999999999999999999999999999999999976553344558888887765 4632
Q ss_pred CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC-----------CCCCCcee
Q 026142 71 GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG-----------IPMKHLAV 139 (243)
Q Consensus 71 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~-----------ip~~~~~~ 139 (243)
|.++.++++++++|+++|++++.++.+|+|.|+|+++||++|||+++|++||+++||+|++ +||+++|+
T Consensus 81 G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG~~~~aai~aa~~AL~da~~~~~~~~~~~~ipl~~~v~ 160 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVA 160 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHTTSSSSCCBCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCCCHHHHHHHHHHHHHHhhcchhcccCcccCCCccCcee
Confidence 2234457899999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEee-cCCCCHHHHHHHHHHHH
Q 026142 140 AICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVT-HGAMSVDDYFHCLERGR 217 (243)
Q Consensus 140 avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~-~g~~~~~~l~~~l~~a~ 217 (243)
+++++++ ++.+|+|||.+||..+++.++|+++.++ +|.+++. + .+.++.++|.+|+++|.
T Consensus 161 avsvg~~-~g~~llDpt~~Ee~~~~~~l~va~~~~g~i~~~q~~-----------------g~~~~~~~~~l~~~l~~A~ 222 (255)
T 1udn_A 161 AVSVGIV-NDRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTM-----------------GEEYSFTKDELIKMLDLAQ 222 (255)
T ss_dssp EEEEEEE-TTEEEESCCHHHHHTCSEEEEEEEETTSCEEEEEEE-----------------ESSCCCCHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEECCCHHHHhhCCCCEEEEEeCCCCEEEEEEe-----------------CCCCCcCHHHHHHHHHHHH
Confidence 9999998 8899999999999999999999998765 4433321 1 25899999999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 026142 218 AASAKLSDFLRRSLQS 233 (243)
Q Consensus 218 ~~~~~l~~~i~~~l~~ 233 (243)
+++++|++++++++++
T Consensus 223 ~~~~~i~~~~~~~l~~ 238 (255)
T 1udn_A 223 KGINELIELQKKLYVI 238 (255)
T ss_dssp HHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999876
No 16
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00 E-value=3.9e-45 Score=313.26 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=180.2
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC------CCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT------GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~------~~~ 73 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++ ...|+.+.|++|.|.++| .|++ |.+
T Consensus 20 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~-~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~ 98 (259)
T 3m7n_G 20 DNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQ-PGEPYPDTPDRGVIIVNAELVPLASPTFEPGPP 98 (259)
T ss_dssp TTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEE-EECCCSSCTTSCEEEEEEECCTTSCTTCCSSSS
T ss_pred cCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEec-ccCCCCCCCCceEEEEEEEeCCcccccccCCCC
Confidence 6899999999999999999999999999999999999999999962 334566778899887765 4642 334
Q ss_pred CCchHHHHHHHHHHHHh--hh------hcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCC-------------
Q 026142 74 GKPEKEYEIILKRTLQS--IC------ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI------------- 132 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~--~~------~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~i------------- 132 (243)
++++.+++++|+|+|++ ++ +.++..+|.|+|+++||++|||+++|+++|+++||.++++
T Consensus 99 ~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~~~~~~~~~~~l 178 (259)
T 3m7n_G 99 DENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGEDYLL 178 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSCEEC
T ss_pred ChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHhCCCCeEEecCCceecc
Confidence 45678999999999998 33 3344456999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHH
Q 026142 133 PMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFH 211 (243)
Q Consensus 133 p~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~ 211 (243)
||+++|+++|++++ ++.+++|||..||..+++.++|+++.++ ++.+++. +.+.++.+++.+
T Consensus 179 p~~~~~~avtvg~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~i~~~-----------------g~~~~~~~~l~~ 240 (259)
T 3m7n_G 179 PVRDLPVSVTSLIV-GNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKS-----------------GGYLLDEKLFDE 240 (259)
T ss_dssp CBCCCCEEEEEEEE-TTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEE-----------------SSCCBCHHHHHH
T ss_pred cccCceeEEEEEEE-CCEEEECCCHHHHhhCCCcEEEEEeCCCcEEEEECC-----------------CCCCcCHHHHHH
Confidence 79999999999998 8899999999999999999999998764 5544431 236999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026142 212 CLERGRAASAKLSDFLRR 229 (243)
Q Consensus 212 ~l~~a~~~~~~l~~~i~~ 229 (243)
|+++|.+++++|+++|++
T Consensus 241 ~l~~a~~~~~~l~~~~~~ 258 (259)
T 3m7n_G 241 LLDVSINCARKLREKFKE 258 (259)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999998865
No 17
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2.7e-44 Score=310.01 Aligned_cols=211 Identities=20% Similarity=0.314 Sum_probs=182.3
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCCCCCCceEEEEEe--cCC------CCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKNENPEKASIEVIW--KPR------TGQ 72 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~~~~~~~l~v~~--~p~------~~~ 72 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+ +|. .|+.+.|++|.|.|+| .|+ .+.
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~--~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~ 99 (271)
T 2wnr_A 22 NKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIG--EPFPDTPEMGVILTNSELLPMASPTFEPGP 99 (271)
T ss_dssp TTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEE--CCCTTCTTCCEEEEEEEECGGGCTTCCCSS
T ss_pred cCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeee--cCCCCCCCceEEEEEEEeCCcccccccCCC
Confidence 58999999999999999999999999999999999999999999 443 4556778999988776 453 233
Q ss_pred CCCchHHHHHHHHHHHHh--hhhcC------CCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC-------------
Q 026142 73 IGKPEKEYEIILKRTLQS--ICILT------INPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG------------- 131 (243)
Q Consensus 73 ~~~~~~~l~~~l~~~l~~--~~~~~------~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~------------- 131 (243)
+++++.+++++|+|+|++ ++.++ ++.+|.|+|+++||++|||+++|+++|+++||++++
T Consensus 100 ~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~~~~~~~~~~~ 179 (271)
T 2wnr_A 100 PDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEVVI 179 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETTEEEE
T ss_pred CchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCceee
Confidence 455678999999999988 44433 445799999999999999999999999999999999
Q ss_pred -------CCCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCC
Q 026142 132 -------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGA 203 (243)
Q Consensus 132 -------ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~ 203 (243)
+||+++|+++|++++ ++.+++|||.+||..+++.++|+++.++ ++.+++. +.|.
T Consensus 180 ~~~~~~~ip~~~~~~avt~g~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~~~i~~i~~~-----------------g~~~ 241 (271)
T 2wnr_A 180 NREKMQPLPVNRKALMCTFAKI-GNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKG-----------------GEGP 241 (271)
T ss_dssp EEEEEEECCBCCCEEEEEEEEE-TTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEE-----------------SSSC
T ss_pred ccCcccccCccCCeEEEEEEEE-CCEEEeCCCHHHHhcCCCcEEEEEeCCCCEEEEECC-----------------CCCC
Confidence 999999999999998 8899999999999999999999998754 4443321 1368
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 204 MSVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 204 ~~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
++.+++.+|+++|.+++++|+++++++++
T Consensus 242 ~~~~~l~~~l~~a~~~~~~i~~~~~~~l~ 270 (271)
T 2wnr_A 242 LTRDDVLKAVSIAVEKVPQLIEYLDKSMT 270 (271)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998864
No 18
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=2.6e-44 Score=311.03 Aligned_cols=212 Identities=24% Similarity=0.302 Sum_probs=183.2
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC------CCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT------GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~------~~~ 73 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|++ ....|+.+.|++|.|.++| .|++ +.+
T Consensus 27 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~-~~~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~ 105 (277)
T 2je6_A 27 KGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKL-EIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPP 105 (277)
T ss_dssp GTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEE-EEECCCTTCTTCCEEEEEEEECTTSCTTCCCSSC
T ss_pred cCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEe-eeeCCCCCCCCccEEEEEEEeCCccCcccccCCC
Confidence 589999999999999999999999999999999999999999995 2234566788999987765 4642 334
Q ss_pred CCchHHHHHHHHHHHHhh--h------hcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcC--------------
Q 026142 74 GKPEKEYEIILKRTLQSI--C------ILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAG-------------- 131 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~~--~------~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~-------------- 131 (243)
++++.+++++|+|+|++. + +.+++++|.|+|+++||++|||+++|+++|+++||++++
T Consensus 106 ~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~~p~v~~~~~~~~~~ 185 (277)
T 2je6_A 106 DENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGISVN 185 (277)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC---CEEE
T ss_pred ChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEecCCcceEe
Confidence 455789999999999983 3 344557899999999999999999999999999999999
Q ss_pred -------CCCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeecCC
Q 026142 132 -------IPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTHGA 203 (243)
Q Consensus 132 -------ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~ 203 (243)
+||+++|+++|++++ ++.+++|||.+||..+++.++|+++.++ ++.+++. +.+.
T Consensus 186 ~~~~~~~ip~~~~~~avsvg~~-~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~-----------------g~~~ 247 (277)
T 2je6_A 186 KNEVVGKLPLNYPVVTISVAKV-DKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKS-----------------GKGS 247 (277)
T ss_dssp EEEEEEECCCSCCCEEEEEEEE-TTEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEE-----------------SSSC
T ss_pred ccCccccccccCCeEEEEEEEE-CCEEecCCCHHHHhcCCCcEEEEEeCCCCEEEEECC-----------------CCCC
Confidence 999999999999998 8899999999999999999999998754 4443321 1358
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 204 MSVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 204 ~~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
++.+++.+|+++|.+++++++++++++++
T Consensus 248 ~~~~~l~~~l~~A~~~~~~i~~~~~~~l~ 276 (277)
T 2je6_A 248 MSLQDIDQAENTARSTAVKLLEELKKHLG 276 (277)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999874
No 19
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=6.8e-44 Score=308.50 Aligned_cols=215 Identities=20% Similarity=0.259 Sum_probs=185.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCC------CCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRT------GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~------~~~ 73 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++. ..|+.+.|++|.|.++| .|++ |.+
T Consensus 22 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~-~~p~~~~~~~g~l~v~~~~~p~a~~~~~~g~~ 100 (278)
T 2nn6_C 22 ENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEF-AAPSTDAPDKGYVVPNVDLPPLCSSRFRSGPP 100 (278)
T ss_dssp TSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEE-CCCCSSSTTCCCCEEEEECCSSSCTTSCSSSC
T ss_pred cCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEe-ecCCCCCCCccEEEEEEEeCCccCccccCCCC
Confidence 58999999999999999999999999999999999999999999954 45666778999887766 4542 334
Q ss_pred CCchHHHHHHHHHHHHh--------hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCC-------------
Q 026142 74 GKPEKEYEIILKRTLQS--------ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGI------------- 132 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~--------~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~i------------- 132 (243)
++++.+++++|+|+|++ +|+.+++++|.|+|+++||++|||+++|+++|+++||+++||
T Consensus 101 ~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG~~~~aai~aa~~AL~~a~iP~v~~~~~~~~~~ 180 (278)
T 2nn6_C 101 GEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDGNILDACTFALLAALKNVQLPEVTINEETALAE 180 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCSCTTHHHHHHHHHHHHTCCCCCCCBCSSSBCCC
T ss_pred cHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccee
Confidence 45678999999999984 344567789999999999999999999999999999999996
Q ss_pred ---------CCCCceeEEEEEEecCC-eEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEeec
Q 026142 133 ---------PMKHLAVAICCCSAESG-YCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVTH 201 (243)
Q Consensus 133 ---------p~~~~~~avt~~~~~~~-~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~~ 201 (243)
||+++|+++|++++ ++ .+|+|||.+||..+++.++|+++.++ ++.+++. +.
T Consensus 181 ~~~~~~~~lp~~~~~~avs~g~~-~~~~~l~Dpt~~Ee~~~~~~l~va~~~~g~i~~v~~~-----------------g~ 242 (278)
T 2nn6_C 181 VNLKKKSYLNIRTHPVATSFAVF-DDTLLIVDPTGEEEHLATGTLTIVMDEEGKLCCLHKP-----------------GG 242 (278)
T ss_dssp TTSCCCSCSCCSCCCEEEEEEEC-TTTCCEESCCTTTTTSCSEEEEEEECTTCCEEEEEES-----------------CC
T ss_pred cCcccccccccCCceEEEEEEEE-CCceEEECCCHHHHhhcCceEEEEEcCCCcEEEEEcc-----------------CC
Confidence 79999999999998 66 99999999999999999999998764 4444321 12
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 026142 202 GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKL 235 (243)
Q Consensus 202 g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~ 235 (243)
+.++.+++.+|+++|.+++++|++++++++++..
T Consensus 243 ~~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~ 276 (278)
T 2nn6_C 243 SGLTGAKLQDCMSRAVTRHKEVKKLMDEVIKSMK 276 (278)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3899999999999999999999999999988754
No 20
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.7e-43 Score=314.78 Aligned_cols=217 Identities=18% Similarity=0.283 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEE--ecCCC------CCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVI--WKPRT------GQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~--~~p~~------~~~ 73 (243)
+|+|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++|.. .|+.+.|++|.|.++ +.|.+ +.+
T Consensus 37 ~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~-~p~~~~~~~g~l~~~v~~~p~a~~~~~~g~~ 112 (358)
T 2nn6_A 37 EKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELV-SPKLNRATEGILFFNLELSQMAAPAFEPGRQ 112 (358)
T ss_dssp TTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEE-CCCSTTTTSCCEEEEEEECTTTCSSCCSSST
T ss_pred cCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEeccc-CCcccCCCCcEEEEEEEecCCccccccCCCC
Confidence 589999999999999999999 899999999999999999999653 456667888877654 55743 223
Q ss_pred CCchHHHHHHHHHHHHhh--------hhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCC------------
Q 026142 74 GKPEKEYEIILKRTLQSI--------CILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP------------ 133 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~~--------~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip------------ 133 (243)
++++.+++++|+|+|++. |+.+++++|.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 113 s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DGn~~dAai~Aa~aAL~da~iP~v~~~~~~v~i~ 192 (358)
T 2nn6_A 113 SDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDGNIIDAASIAAIVALCHFRRPDVSVQGDEVTLY 192 (358)
T ss_dssp HHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCSCCHHHHHHHHHHHHHHCCCCCCBCCTTCCBCC
T ss_pred CHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCCCHHHHHHHHHHHHHHHhCcCcEEeeCCeeEec
Confidence 345689999999999874 556677999999999999999999999999999999999999
Q ss_pred -----------CCCceeEEEEEEec-CCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEEEee
Q 026142 134 -----------MKHLAVAICCCSAE-SGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIITSVT 200 (243)
Q Consensus 134 -----------~~~~~~avt~~~~~-~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~~~~ 200 (243)
|+++|+++|+|++. ++.+|+|||..||..+++.++|+++.++ +|.+++. +
T Consensus 193 ~~~~~~~~~l~i~~~p~avsvgl~~~~~~illDPt~~Ee~~~~~~l~Va~t~~g~I~~lqk~-----------------G 255 (358)
T 2nn6_A 193 TPEERDPVPLSIHHMPICVSFAFFQQGTYLLVDPNEREERVMDGLLVIAMNKHREICTIQSS-----------------G 255 (358)
T ss_dssp HHHHTSCCCCCBCCCEEEEEEEECTTTSSEEESCCHHHHHHCSCEEEEEEETTTEEEEEEEE-----------------S
T ss_pred ccccccccccCccCCEEEEEEEEEeeCCEEEECCCHHHHhhcCccEEEEEcCCCeEEEEEeC-----------------C
Confidence 89999999999863 5799999999999999999999998875 5555432 1
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 026142 201 HGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239 (243)
Q Consensus 201 ~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~ 239 (243)
.+.++.+++.+|+++|.+++++|.++++++++++..++.
T Consensus 256 ~~~ls~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~ 294 (358)
T 2nn6_A 256 GIMLLKDQVLRCSKIAGVKVAEITELILKALENDQKVRK 294 (358)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Confidence 236899999999999999999999999999998776553
No 21
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-43 Score=308.24 Aligned_cols=218 Identities=17% Similarity=0.243 Sum_probs=175.2
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEE--EEecCC------CCCC
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIE--VIWKPR------TGQI 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~--v~~~p~------~~~~ 73 (243)
+|+|+|||+++|+|++.+++| +++|||+|++|+|+|+|+|++|. ..|..+.|+++.+. |+|.|. .|.+
T Consensus 21 ~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~-~~p~~~~~~~g~~~~~ve~~~~~~~~~~~g~~ 96 (305)
T 2wp8_A 21 QNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQI-AQPYEDRPFEGLFVISTEISPMAGSQFENGNI 96 (305)
T ss_dssp TTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEE-C-CCSSCTTCCEEEEEECCC------------
T ss_pred hCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccc-cCCcccCCCCcEEEEEEEECCCCCccccCCCC
Confidence 589999999999999999999 79999999999999999999954 45666677777665 456663 2445
Q ss_pred C-CchHHHHHHHHHHHHh--------hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCC-----------
Q 026142 74 G-KPEKEYEIILKRTLQS--------ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIP----------- 133 (243)
Q Consensus 74 ~-~~~~~l~~~l~~~l~~--------~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip----------- 133 (243)
+ +++.+++++|+++|++ +|+.+++..|.|+|+++||++|||+++|+++|+++||+++++|
T Consensus 97 ~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG~~~dAai~aa~~AL~~a~iP~~~~~~~~~~i 176 (305)
T 2wp8_A 97 TGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIV 176 (305)
T ss_dssp ----------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSSCCB
T ss_pred ChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCCCHHHHHHHHHHHHHHHhCCCeEEecCCceEe
Confidence 5 6778999999999984 3555677789999999999999999999999999999999999
Q ss_pred ------------CCCceeEEEEEEec---------C----CeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccC
Q 026142 134 ------------MKHLAVAICCCSAE---------S----GYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQ 187 (243)
Q Consensus 134 ------------~~~~~~avt~~~~~---------~----~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~ 187 (243)
|++.|+++|+|++. + +.+|+|||..||..+++.++|+++.++ +|.+++.
T Consensus 177 ~~~~~~~~~~l~~~~~pvavs~g~i~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~l~~~----- 251 (305)
T 2wp8_A 177 HPVNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKA----- 251 (305)
T ss_dssp CCSSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEE-----
T ss_pred cccccccccccccccCeEEEEEEEEccccccccccccccCCeEEeCCCHHHHhccCCcEEEEEcCCCcEEEEEec-----
Confidence 67899999999983 1 789999999999999999999998765 5555432
Q ss_pred CCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 026142 188 GEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240 (243)
Q Consensus 188 ~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~~ 240 (243)
+.+.++.+++.+|+++|.+++++|+++++++++++..++.+
T Consensus 252 ------------g~~~~~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~r~~ 292 (305)
T 2wp8_A 252 ------------GGLPMDALTLMKCCHEAYSIIEKITDQILQLLKEDSEKRNK 292 (305)
T ss_dssp ------------EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22379999999999999999999999999999998877744
No 22
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-46 Score=314.22 Aligned_cols=208 Identities=25% Similarity=0.382 Sum_probs=164.7
Q ss_pred CCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCCCCCCCCchHHHHHHHHHHHHh
Q 026142 11 PNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPRTGQIGKPEKEYEIILKRTLQS 90 (243)
Q Consensus 11 ~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~l~~~l~~~l~~ 90 (243)
++|+|++.+++|.+++++|||+|++|+|+|+|+|+||.+.+++.+.+++++|+|+|.|+.|.++++ +++++|+|+|++
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l~v~~~p~~G~~~~~--e~~~li~r~l~~ 79 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDISYRANCGDNKFN--VLNNIIHSTLSN 79 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCCSSCCCC--CCS--SCTTHHHHC--C
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEEEEEEcCCCCCCCHH--HHHHHHHHHHHH
Confidence 579999999999999999999999999999999999988777778899999999999988876655 899999999999
Q ss_pred hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCHHHHhhccccEEEE
Q 026142 91 ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLV 170 (243)
Q Consensus 91 ~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~ 170 (243)
++.++.||+|.|+|+++||++||++++|++||+++||+++||||+++++|++++++ ++.+++|||..|+..+++.++|+
T Consensus 80 ~i~~~~~p~~~I~I~~~VL~~DG~~~~aai~aa~~AL~dagiP~~~~v~avsvg~~-~g~~llDpt~~Ee~~~~~~l~va 158 (222)
T 3krn_A 80 AINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVFCGVLIVRV-KDELIIDPTAKQEAASTGRVLFS 158 (222)
T ss_dssp CSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTTSCCCCCCCEEC-SSSEESSCCTTTTTSCC-CCCCE
T ss_pred hccHHhCCCcEEEEEEEEEECCCChHHHHHHHHHHHHHHCCCCccCcEEEEEEEEE-CCEEEeCCCHHHHhccCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999995 88999999999999999999999
Q ss_pred e---eC-Cc-cccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 026142 171 F---PN-SI-LSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLS 240 (243)
Q Consensus 171 ~---~~-~~-~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~~ 240 (243)
+ ++ .+ ++. ++..|.++.+++.+|+++|.+++++|.++++++++++..+++.
T Consensus 159 ~~~~~~~~~~i~~-------------------vq~~g~~~~~~l~~~l~~a~~~~~~i~~~~~~~l~~~~~~~~~ 214 (222)
T 3krn_A 159 VCKGSDGHPEVCA-------------------MDAIGHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRKLSVDEQ 214 (222)
T ss_dssp ECCCSSSSCCEEE-------------------ECCBSSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHC--
T ss_pred EEccCCCCCCEEE-------------------EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 8 54 22 333 2346799999999999999999999999999999998887653
No 23
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=3.1e-43 Score=307.97 Aligned_cols=219 Identities=20% Similarity=0.243 Sum_probs=185.9
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEe--cCCCC-----CC-
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIW--KPRTG-----QI- 73 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~--~p~~~-----~~- 73 (243)
+|+|+|||+++|+|++.+++|.+++++|||+|++|+|+|+|+|+++ ...|..+.|++|.+.++| .|++. .+
T Consensus 34 ~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e-~~~p~~~~~~~g~l~~~v~~~p~a~~~~~~r~~ 112 (305)
T 2nn6_E 34 EDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAE-MGTPKLEKPNEGYLEFFVDCSASATPEFEGRGG 112 (305)
T ss_dssp TTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCC-CSCCCSSSCSSCCEEEECCCCTTTCSSCCTTST
T ss_pred cCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEE-eeCCCcCCCCceEEEEEEEeCCCcCccccCCCC
Confidence 5899999999999999999999999999999999999999999994 445777788888877654 57531 11
Q ss_pred CCchHHHHHHHHHHHHh--------hhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCC----------
Q 026142 74 GKPEKEYEIILKRTLQS--------ICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMK---------- 135 (243)
Q Consensus 74 ~~~~~~l~~~l~~~l~~--------~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~---------- 135 (243)
++++.+++++|+|+|++ +|+.++..+|.|+|+++||++|||+++|+++|+++||+++++|+.
T Consensus 113 ~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG~~~daai~aa~~AL~~a~iP~~~~~~~~~~~~ 192 (305)
T 2nn6_E 113 DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEEGSK 192 (305)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC-----
T ss_pred chHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHhcCCCeEEEecCCCCce
Confidence 13467899999999987 334456667999999999999999999999999999999999954
Q ss_pred -----------------CceeEEEEEEecCCeEEeCCCHHHHhhccccEEEEeeCCc-cccccCCCcccCCCCcccceEE
Q 026142 136 -----------------HLAVAICCCSAESGYCILDPTKLEEQKMKGFAYLVFPNSI-LSVLPEGSSLVQGEPMEHGIIT 197 (243)
Q Consensus 136 -----------------~~~~avt~~~~~~~~~lvDPt~~Ee~~~~~~~~v~~~~~~-~~~~~k~~~~~~~~~~~~~~i~ 197 (243)
++|+++|++++ ++.+|+|||.+||..+++.++|+++.++ ++.+++.
T Consensus 193 ~i~~~~d~~~~~~l~l~~~p~avt~g~i-~~~~l~Dpt~~Ee~~~~~~l~Va~~~~g~i~~i~~~--------------- 256 (305)
T 2nn6_E 193 DIELSDDPYDCIRLSVENVPCIVTLCKI-GYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKV--------------- 256 (305)
T ss_dssp -EEEEESSCCCSCCCCTTCCCCEEEEES-SSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEE---------------
T ss_pred eeeccCcccccccccccCceEEEEEEEE-CCEEEECCCHHHHhhcCCcEEEEEcCCCCEEEEEcc---------------
Confidence 35789999997 8899999999999999999999998765 5544431
Q ss_pred EeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 026142 198 SVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239 (243)
Q Consensus 198 ~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~ 239 (243)
+.+.++.+++.+|+++|.+++++|+++++++++++...+-
T Consensus 257 --g~~~l~~~~l~~~l~~A~~~~~~i~~~~~~~l~~~~~~~~ 296 (305)
T 2nn6_E 257 --GKGSLDPESIFEMMETGKRVGKVLHASLQSVVHKEESLGP 296 (305)
T ss_dssp --ESSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 2348999999999999999999999999999998776443
No 24
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=100.00 E-value=3.3e-40 Score=305.30 Aligned_cols=216 Identities=19% Similarity=0.268 Sum_probs=179.1
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEE-EcCccCCCCC---CCCCceEE--EEEecCCC-----
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKN---ENPEKASI--EVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~---~~~~~~~l--~v~~~p~~----- 70 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+| .||.+..+.. ..++++++ +++|.|++
T Consensus 312 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e~~ 391 (549)
T 3gme_A 312 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG 391 (549)
T ss_dssp TCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTCCC
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCCcc
Confidence 6899999999999999999999999999999999999999999 5886543322 12355555 56667742
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhh-cCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026142 71 --GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|++++. .+.|| |.|+|+++||++|||.++|++||+++||+||||||+++++++++|++.
T Consensus 392 ~~g~~~~Reie~~~li~raL~~vI~~~~~~P-~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGvPm~~~Vaavs~Gli~ 470 (549)
T 3gme_A 392 MVGSPKRREIGHGRLAKRGVLAVMPDMDKFP-YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 470 (549)
T ss_dssp CSSCCCSSHHHHHHHHHHHHTTTCCCTTTCC-CEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEE
T ss_pred cCCCCChhHHHHHHHHHHHHHHhcCccccCC-eEEEEEEEEEECCCCHHHHHHHHHHHHHHhCCCCcccceeEEEEEEEc
Confidence 23567889999999999999988 56777 679999999999999999999999999999999999999999999985
Q ss_pred CC---eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 026142 148 SG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224 (243)
Q Consensus 148 ~~---~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~ 224 (243)
++ .+++||+..|+..++..+.|+++.+++++++.. ..-+.++.++|.+|+++|.+++++|+
T Consensus 471 ~g~~~~iL~D~~~~Ed~~~d~d~~Va~t~~gitalqmd----------------~ki~G~s~~~l~~~L~~A~~g~~~I~ 534 (549)
T 3gme_A 471 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD----------------IKIEGITKEIMQVALNQAKGARLHIL 534 (549)
T ss_dssp ETTEEEEEESCCHHHHHHSSEEEEEEECSSCEEEEEEE----------------ECCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecCChHHHccCCceEEEEecCCCeEEEEEc----------------cccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 53 789999999999999999999877766554421 01234899999999999999999999
Q ss_pred HHHHHHHHhh
Q 026142 225 DFLRRSLQSK 234 (243)
Q Consensus 225 ~~i~~~l~~~ 234 (243)
+.|++++.+.
T Consensus 535 ~~m~~al~~p 544 (549)
T 3gme_A 535 GVMEQAINAP 544 (549)
T ss_dssp HHHHHHCCSC
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 25
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=307.43 Aligned_cols=214 Identities=17% Similarity=0.277 Sum_probs=182.0
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEEcCccCCC-CCC-------CCCceE--EEEEecCCC-
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVYGPKAGTK-KNE-------NPEKAS--IEVIWKPRT- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~gp~~~~~-~~~-------~~~~~~--l~v~~~p~~- 70 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+|++|...+. +.+ .+++++ ++++|.|++
T Consensus 316 ~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~st 395 (630)
T 3u1k_A 316 EYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPYAT 395 (630)
T ss_dssp HSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGGGG
T ss_pred CCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCCcc
Confidence 589999999999999999999999999999999999999999998432221 111 245554 566677753
Q ss_pred ------CCCCCchHHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEE
Q 026142 71 ------GQIGKPEKEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCC 144 (243)
Q Consensus 71 ------~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~ 144 (243)
+.+++++.+++++++|+|++++. ..|| |.|+|+++||++|||.++|++||+++||+||||||+++++++++|
T Consensus 396 ~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p-~tI~V~~~VLesDGs~~~AsI~aa~lAL~dAGIPl~~~Vaavs~g 473 (630)
T 3u1k_A 396 NEIGKVTGLNRRELGHGALAEKALYPVIP-RDFP-FTIRVTSEVLESNGSSSMASACGGSLALMDSGVPISSAVAGVAIG 473 (630)
T ss_dssp TCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCS-SEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEE
T ss_pred cccccCCCCChHHHHHHHHHHHHHHhhCc-ccCC-eEEEEEEEEEEcCCCHHHHHHHHHHHHHHhCCCCcccceEEEEEE
Confidence 33456788999999999999887 4676 779999999999999999999999999999999999999999999
Q ss_pred EecC-----C-----eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecC-CCCHHHHHHHH
Q 026142 145 SAES-----G-----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMSVDDYFHCL 213 (243)
Q Consensus 145 ~~~~-----~-----~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g-~~~~~~l~~~l 213 (243)
++.+ + .+++||+..|+..++..+.|+++.++++.+++. +.+ .++.++|.+|+
T Consensus 474 li~~~~~~~g~~~~~~iLlD~~~~Ed~~~d~d~~Va~t~~gIt~lQ~~-----------------~k~~~~s~~~l~~aL 536 (630)
T 3u1k_A 474 LVTKTDPEKGEIEDYRLLTDILGIEDYNGDMDFKIAGTNKGITALQAD-----------------IKLPGIPIKIVMEAI 536 (630)
T ss_dssp EEEEECSSSSCEEEEEEEESCCHHHHHTSSEEEEEEECSSCEEEEEEE-----------------ECSSCBCHHHHHHHH
T ss_pred EecCCCcccccccCceEEecCCHHHHhhCcceEEEEecCCceEEEEec-----------------CCCCCCCHHHHHHHH
Confidence 9862 3 799999999999999999999887766555431 222 78999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 026142 214 ERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 214 ~~a~~~~~~l~~~i~~~l~~~ 234 (243)
++|.+++++|++.|++++.+.
T Consensus 537 ~~A~~g~~~I~~~m~~al~~~ 557 (630)
T 3u1k_A 537 QQASVAKKEILQIMNKTISKP 557 (630)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 26
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=100.00 E-value=1.1e-39 Score=312.30 Aligned_cols=216 Identities=17% Similarity=0.235 Sum_probs=185.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEEE-cCccCCCCCC---CCCceE--EEEEecCCC-----
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAVY-GPKAGTKKNE---NPEKAS--IEVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V~-gp~~~~~~~~---~~~~~~--l~v~~~p~~----- 70 (243)
+|+|+|||.++|+|++.+++|++++++|||+|++|+|+|+|+|+ ||.+..++.+ .+++++ ++++|.|++
T Consensus 353 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~~ 432 (757)
T 1e3p_A 353 EKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGETG 432 (757)
T ss_dssp TCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCCC
T ss_pred CCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCccccccc
Confidence 68999999999999999999999999999999999999999994 8876554322 456666 566677742
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhh-cCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026142 71 --GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|+++++ .+.|| |.|+|+++||++|||+++|+++|+++||+|||+||++++++++++++.
T Consensus 433 ~~g~~~~reie~~~li~raL~~vI~~~~~~P-~tI~V~~~VLesDGs~~~Asi~aa~lAL~dAgIP~k~~Vaavs~gli~ 511 (757)
T 1e3p_A 433 RVGSPKRREIGHGALAERAIVPVLPTREEFP-YAIRQVSEALGSNGSTSMGSVCASTMSLLNAGVPLKAPVAGIAMGLIS 511 (757)
T ss_dssp CCSSCCHHHHHHHHHHHHHHGGGCCCTTTSC-EEEEEEEEEEECSSCHHHHHHHHHHHHHHHHTCCCSSCCEEEEEEEEE
T ss_pred CCCCCchhHHHHHHHHHHHHHHhccccccCC-EEEEEEEEEEECCCCHHHHHHHHHHHHHHHcCCCcccceEEEEEEEEe
Confidence 23556789999999999999988 56676 779999999999999999999999999999999999999999999984
Q ss_pred C---C----eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHH
Q 026142 148 S---G----YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAAS 220 (243)
Q Consensus 148 ~---~----~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~ 220 (243)
+ + .+|+||+..|+..++..++|+.+..+++.+++.+ ..+.++.+++.+|+++|.+++
T Consensus 512 eg~dg~~~~~iLlDp~~~Ed~~gd~d~~Va~t~~~It~lQ~~g----------------k~~gi~~e~l~~aL~~A~~~~ 575 (757)
T 1e3p_A 512 QEINGETHYVALTDILGAEDAFGDMDFKVAGTKEFVTALQLDT----------------KLDGIPASVLAAALKQARDAR 575 (757)
T ss_dssp EESSSCEEEEEEESCCHHHHHHCSEEEEEEECSSSEEEEEEEE----------------CSSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCccceeEEeCCCHHHHhccCceEEEEecCCeEEEEEEcC----------------CccccCHHHHHHHHHHHHHHH
Confidence 3 2 7999999999999999999987665566554320 125689999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 026142 221 AKLSDFLRRSLQSK 234 (243)
Q Consensus 221 ~~l~~~i~~~l~~~ 234 (243)
++|++.|+++|.++
T Consensus 576 ~~I~~~m~~al~~~ 589 (757)
T 1e3p_A 576 LHILDVMMEAIDTP 589 (757)
T ss_dssp HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhccc
Confidence 99999999999887
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=100.00 E-value=1.6e-39 Score=310.13 Aligned_cols=217 Identities=19% Similarity=0.249 Sum_probs=178.6
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEE-EcCccCCCCCC-----CCCceEEEEEecCCC-----
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKNE-----NPEKASIEVIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~~-----~~~~~~l~v~~~p~~----- 70 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+| .||.+..+..+ ......++++|.|++
T Consensus 318 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e~~ 397 (723)
T 3cdi_A 318 GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETG 397 (723)
T ss_dssp TCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTCCC
T ss_pred cCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccccc
Confidence 6899999999999999999999999999999999999999999 58876544322 233445667777752
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhhc-CCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026142 71 --GQIGKPEKEYEIILKRTLQSICIL-TINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~~-~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++..++++++|+|++++.. +.|| |.|+|+++||++|||+++|+++|+++||+|+||||++++++++++++.
T Consensus 398 r~g~p~~REi~~~~li~raL~~vI~~~~~~p-~tI~Vd~~VLesdGs~~~Asi~aa~lAL~dAgVPl~~~vaavs~gli~ 476 (723)
T 3cdi_A 398 MVGSPKRREIGHGRLAKRGVLAVMPDMDKFP-YTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVK 476 (723)
T ss_dssp CC-----CTTHHHHHHHHHHHTTSCCSSSSC-SCEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhcCcccCCC-EEEEEEEEEEeCCCCHHHHHHHHHHHHHhcCCCCcccceeeEEEEEEc
Confidence 223567889999999999999885 5565 789999999999999999999999999999999999999999999986
Q ss_pred CC---eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 026142 148 SG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224 (243)
Q Consensus 148 ~~---~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~ 224 (243)
+| .+|+||+..|+..++..++|+++.+++|.+++.. ..+.++.++|.+|+++|.+++++|+
T Consensus 477 ~g~~~~iL~Dp~~~Ed~~~d~d~~Va~t~~gI~~lq~~g----------------k~~~is~e~l~~~l~~A~~~~~~I~ 540 (723)
T 3cdi_A 477 EGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDI----------------KIEGITKEIMQVALNQAKGARLHIL 540 (723)
T ss_dssp ETTEEEEESSCCGGGGGGCSEEEEEEECSSCEEEEEEEE----------------CSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEECCChHHhhhccceeeecccCCceEEEEeCC----------------ccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 44 4999999999999999999998887766655420 1257999999999999999999999
Q ss_pred HHHHHHHHhhc
Q 026142 225 DFLRRSLQSKL 235 (243)
Q Consensus 225 ~~i~~~l~~~~ 235 (243)
+.|+++|.++.
T Consensus 541 ~~m~~al~~~~ 551 (723)
T 3cdi_A 541 GVMEQAINAPR 551 (723)
T ss_dssp HHHHHHCC---
T ss_pred HHHHHHhhhcc
Confidence 99999998763
No 28
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=100.00 E-value=2.9e-39 Score=307.24 Aligned_cols=216 Identities=19% Similarity=0.221 Sum_probs=183.8
Q ss_pred CCCCCCCCCCCCCCCceEEeCCCCCCCceEEEEeCCeEEEEEE-EcCccCCCCC---CCCCceEEE--EEecCCC-----
Q 026142 2 EVDRADGRNPNQLRPLACSCSILHRAHGSASWSQGDTKVLAAV-YGPKAGTKKN---ENPEKASIE--VIWKPRT----- 70 (243)
Q Consensus 2 ~~~R~DGR~~~e~R~i~i~~~~l~~a~GSa~v~~G~T~Vi~~V-~gp~~~~~~~---~~~~~~~l~--v~~~p~~----- 70 (243)
+|+|+|||+++|+|++.+++|++++++|||+|++|+|+|+|+| .||.+..++. ..++++++. ++|.|++
T Consensus 328 ~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~er~ 407 (726)
T 4aid_A 328 TGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGETG 407 (726)
T ss_dssp SSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTCCC
T ss_pred CCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccccc
Confidence 6899999999999999999999999999999999999999999 6887665432 234666654 5566742
Q ss_pred --CCCCCchHHHHHHHHHHHHhhhh-cCCCCceEEEEEEEEEeCCCChHHHHHHHHHHHHHHcCCCCCCceeEEEEEEec
Q 026142 71 --GQIGKPEKEYEIILKRTLQSICI-LTINPNTTTSVIIQVVHDDGALLPCAINAACAALVDAGIPMKHLAVAICCCSAE 147 (243)
Q Consensus 71 --~~~~~~~~~l~~~l~~~l~~~~~-~~~~~~~~i~i~v~vl~~dG~~~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~ 147 (243)
+.+++++.+++++++|+|++++. .+.|| |.|+|+++||++|||.++|++||+++||+||||||+++++++++|++.
T Consensus 408 ~~g~~~~Reie~~~li~raL~~vI~~~~~~P-~tI~V~~~VLesDGs~~~AsI~aa~lAL~DAGIPm~~~VaavsvGli~ 486 (726)
T 4aid_A 408 RMGSPGRREIGHGKLAWRALRPMLPTKEDFP-YTIRLVSEITESNGSSSMATVCGSSLAMMDAGVPLVRPVSGIAMGLIL 486 (726)
T ss_dssp CCSSCCHHHHHHHHHHHHHHGGGSCCTTTCC-CEEEEEEEEEECSSCHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEE
T ss_pred cCCCcchhhHHHHHHHHHHHHHhcCccccCC-eEEEEEEEEEEcCCcHHHHHHHHHHHHHHhcCCccccCeeEEEEEEEc
Confidence 33556788999999999999998 56776 679999999999999999999999999999999999999999999986
Q ss_pred CC---eEEeCCCHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHH
Q 026142 148 SG---YCILDPTKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLS 224 (243)
Q Consensus 148 ~~---~~lvDPt~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~ 224 (243)
++ .+++||+..|+..++..+.++.+.++++.++... ..+.++.++|.+|+++|.+++.+|+
T Consensus 487 ~g~~~~iLlD~~~~Ed~~gd~d~~Va~t~~gIt~lQ~d~----------------k~~~~s~e~l~~aL~~A~~g~~~I~ 550 (726)
T 4aid_A 487 EQDGFAVLSDILGDEDHLGDMDFKVAGTSEGLTSLQMDI----------------KIAGITPAIMEQALAQAKEGRAHIL 550 (726)
T ss_dssp CSSCEEEEESCCTTGGGGSSEEEEEEEETTEEEEEEEEE----------------CSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEecCChhHHhcCCceEEEEecCCceEEEEecC----------------CcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 53 5789999999999998898887766555444210 1247899999999999999999999
Q ss_pred HHHHHHHHhh
Q 026142 225 DFLRRSLQSK 234 (243)
Q Consensus 225 ~~i~~~l~~~ 234 (243)
+.|++++.++
T Consensus 551 ~~m~~al~~~ 560 (726)
T 4aid_A 551 GEMNKAMDAP 560 (726)
T ss_dssp HHHHTTCSSC
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=257.19 Aligned_cols=200 Identities=19% Similarity=0.165 Sum_probs=169.2
Q ss_pred CCCCceEEeCCCCC-CCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecC--CC------------CCCCCch
Q 026142 13 QLRPLACSCSILHR-AHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP--RT------------GQIGKPE 77 (243)
Q Consensus 13 e~R~i~i~~~~l~~-a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p--~~------------~~~~~~~ 77 (243)
.-|++.+++|.+.+ |+|||++++|+|+|+|+|++|...++. +.+.|.|+|.. ++ +.++.++
T Consensus 13 ~~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e 88 (630)
T 3u1k_A 13 GNRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKE 88 (630)
T ss_dssp SSSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----SSCCEEEEEECSEETTTTEECTTC-----CCHHH
T ss_pred CCEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC----CeeEEEEEEEecccccCCCCccccccCCCCCHHH
Confidence 36899999999986 999999999999999999998765432 56668887753 11 2234457
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh--HHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCC
Q 026142 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~--~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDP 155 (243)
.+++++|+|+|++++.... .|.++|+++||++||+. ..+++||+++||.+++|||++++++|+++++ +|.+|+||
T Consensus 89 ~lisRlIdR~lRp~~~~~~--~~~~qI~~~VLs~Dg~~~~~~aai~aAs~AL~~s~iP~~~~vaav~vg~i-~g~~vldP 165 (630)
T 3u1k_A 89 ILTSRIIDRSIRPLFPAGY--FYDTQVLCNLLAVDGVNEPDVLAINGASVALSLSDIPWNGPVGAVRIGII-DGEYVVNP 165 (630)
T ss_dssp HHHHHHHHHHHGGGSCTTC--CCCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHSSSCCCCCCEEEEEEEE-TTEEEESC
T ss_pred HHHHHHHhHHhhhcccccC--CCceEEEEEEEECCCCCCHHHHHHHHHHHHHhccCCCcCCCeEEEEEEEE-CCEEEECC
Confidence 8899999999999998644 47788999999999997 8899999999999999999999999999997 89999999
Q ss_pred CHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026142 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 156 t~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g-~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~ 234 (243)
|..|++.++..++|+++.++...+ .++.| .++.+++.+++++|.++++.+++++++.+++.
T Consensus 166 t~~E~~~s~~dl~Va~t~~~~i~m------------------ve~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~ 227 (630)
T 3u1k_A 166 TRKEMSSSTLNLVVAGAPKSQIVM------------------LEASAENILQQDFCHAIKVGVKYTQQIIQGIQQLVKET 227 (630)
T ss_dssp CHHHHHTEEEEEEEEEETTTEEEE------------------EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhCCceEEEEEccCCcEEE------------------EECCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986542222 22344 48999999999999999999999999999876
Q ss_pred ccc
Q 026142 235 LPG 237 (243)
Q Consensus 235 ~~~ 237 (243)
...
T Consensus 228 ~~~ 230 (630)
T 3u1k_A 228 GVT 230 (630)
T ss_dssp TCC
T ss_pred CCC
Confidence 543
No 30
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.97 E-value=4.6e-29 Score=238.17 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=165.7
Q ss_pred CCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecCC--------------CCCCCCchHH
Q 026142 15 RPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKPR--------------TGQIGKPEKE 79 (243)
Q Consensus 15 R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p~--------------~~~~~~~~~~ 79 (243)
|++.+++|.+. +|+||+++++|+|+|+|+|+++.. |++ .-+...|+|+|.|. .|+++.++.+
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~--~~~-~~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~l 96 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKK--AKP-GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETL 96 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSS--CCS-SCCSCCEEEEEEECGGGGTCCCC-------CCCHHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCC--CCC-CCCeeeEEEEEeEeccccccCCCccccCCCCCChHHhH
Confidence 69999999885 799999999999999999998643 321 12445688888753 2334445789
Q ss_pred HHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh--HHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCCCH
Q 026142 80 YEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDPTK 157 (243)
Q Consensus 80 l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~--~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDPt~ 157 (243)
++|+|+|.|++++.. +| +|.++|+++||++||+. ..+++||+++||..+++|+.+++++|++|++ +|.+|+|||.
T Consensus 97 ~sRlIdR~lRplfp~-~~-~~~vqv~~~vls~Dg~~~~d~~ai~aAsaAL~~s~iP~~~pv~av~vg~i-~g~~v~nPt~ 173 (723)
T 3cdi_A 97 IARLIDRPIRPLFPE-GF-VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNPTQ 173 (723)
T ss_dssp HHHHHHHHHGGGSCT-TC-CSCEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTSSCCCCCCCEEEEEE-TTEEEESCCT
T ss_pred HHHHhCccchhcccc-cC-cceEEEEEEEEEcCCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEE-CCEEEECcCH
Confidence 999999999999775 34 69999999999999986 5599999999999999999999999999997 8899999999
Q ss_pred HHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeecC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 026142 158 LEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTHG-AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLP 236 (243)
Q Consensus 158 ~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~g-~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~ 236 (243)
+|++.++..++++.+.+. +.|.+ +.| .++.+++.++++.|.+.++++++++++++++...
T Consensus 174 ~e~~~s~~~lvvagt~~~-i~mve------------------~~~~~~se~~~~~al~~a~~~~~~l~~~~~~~~~~~~~ 234 (723)
T 3cdi_A 174 DELKESKLDLVVAGTEAA-VLMVE------------------SEAQLLSEDQMLGAVVFGHEQQQVVIQNINELVKEAGK 234 (723)
T ss_dssp TGGGGCSEEEEEEECSSC-EEEEE------------------EEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCceEEEEccCCE-EEEEe------------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999865533 33433 333 7999999999999999999999999999987655
Q ss_pred c
Q 026142 237 G 237 (243)
Q Consensus 237 ~ 237 (243)
.
T Consensus 235 ~ 235 (723)
T 3cdi_A 235 P 235 (723)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.96 E-value=1e-28 Score=228.68 Aligned_cols=200 Identities=17% Similarity=0.146 Sum_probs=165.5
Q ss_pred CCCCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEecC---------C-----CCCCCCch
Q 026142 13 QLRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWKP---------R-----TGQIGKPE 77 (243)
Q Consensus 13 e~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~p---------~-----~~~~~~~~ 77 (243)
.-|++.+++|.+. +|+||+++++|+|+|+|+|+++...++ .-+...|+|+|.+ . .|+++.++
T Consensus 12 ~~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~---g~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~ 88 (549)
T 3gme_A 12 GQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKP---GQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGE 88 (549)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCT---TCCSCCEEEEEEECGGGTTCCCSCC-----CCCHHH
T ss_pred CCEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCC---CCCCccceeeeeeehhhcccCCCcCcCcCCCCChhh
Confidence 3589999999886 599999999999999999998654321 1233458888752 1 24455567
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh--HHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCC
Q 026142 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~--~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDP 155 (243)
.+++|+|+|.|++++.... .+.++|+++||+.||+. ..+++||+++||..++||+++++++|++|++ +|.+|+||
T Consensus 89 ~l~~RlIdR~lRplfp~~~--~~evqI~~~Vls~D~~~~pd~~ai~gAs~AL~~s~iP~~gpvaaV~Vg~i-~g~~vlnP 165 (549)
T 3gme_A 89 TLIARLIDRPIRPLFPEGF--VNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI-NDQYVLNP 165 (549)
T ss_dssp HHHHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHCSCCCCCCEEEEEEEE-TTEEEESC
T ss_pred hHHHHHhCCccccccccCC--cccEEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCCcCCCeeEEEEEEE-CCEEEECC
Confidence 8999999999999988643 46899999999999865 4688999999999999999999999999996 99999999
Q ss_pred CHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeec-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026142 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH-GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 156 t~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~-g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~ 234 (243)
|.+|++.++..++++++.++ . +..++. +.++.+++.+++++|.+.++++++++++++++.
T Consensus 166 t~~e~~~s~~dl~va~t~~~-i------------------~mve~e~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~ 226 (549)
T 3gme_A 166 TQDELKESKLDLVVAGTEAA-V------------------LMVESEAELLSEDQMLGAVVFGHEQQQVVIQNINELVKEA 226 (549)
T ss_dssp CTTTTTTCSBCEEEEECSSC-E------------------EEEEEEEEEECHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHhhCceEEEEEecCCe-E------------------EEEEccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987654 2 223334 489999999999999999999999999999876
Q ss_pred ccc
Q 026142 235 LPG 237 (243)
Q Consensus 235 ~~~ 237 (243)
...
T Consensus 227 ~~~ 229 (549)
T 3gme_A 227 GKP 229 (549)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 32
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.96 E-value=1.8e-28 Score=233.25 Aligned_cols=200 Identities=17% Similarity=0.152 Sum_probs=167.5
Q ss_pred CCCCceEEeCCCC-CCCceEEEEeCCeEEEEEEEcCccCCCCCCCCCceEEEEEec---------C-----CCCCCCCch
Q 026142 13 QLRPLACSCSILH-RAHGSASWSQGDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---------P-----RTGQIGKPE 77 (243)
Q Consensus 13 e~R~i~i~~~~l~-~a~GSa~v~~G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~---------p-----~~~~~~~~~ 77 (243)
.-|++.+++|.+. +|+||+++++|+|+|+|+|+++...++ ..+..+|+++|. | +.|+++.++
T Consensus 26 ~~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~---g~df~pltveY~ek~~a~G~iPg~~~~REGrps~~~ 102 (726)
T 4aid_A 26 GGKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKP---GQDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEKE 102 (726)
T ss_dssp TTEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCT---TCCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHHH
T ss_pred CCeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCC---CCCCcCceeeeeeehhhcccCCCcccCCCCCCCchh
Confidence 4689999999886 599999999999999999998654322 123456888875 2 124455567
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh--HHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCC
Q 026142 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~--~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDP 155 (243)
.+++|+|+|.|++++.... .+.++|+++||+.||+. ..+++||+++||..+++|+++++++|++|++ +|.+++||
T Consensus 103 ~li~RlIdR~lRplf~~~~--~~evqI~~~Vls~Dg~~~~d~~ai~gAs~AL~~s~iP~~~~vaaV~Vg~i-~g~~vldP 179 (726)
T 4aid_A 103 TLVSRLIDRPIRPLFVKGF--KNEVQVVVTVLQHDLENDPDILGMVAASAALCLSGAPFMGPIGAARVGWV-DGAYVLNP 179 (726)
T ss_dssp HHHHHHHHHHHGGGBCTTC--CSCEEEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCSBCCCCEEEEEEEE-TTEEEESC
T ss_pred hhHHHHhCCccccccccCC--ccceEEEEEEEecCCCCChhHHHHHHHHHHHHhcCCCcCCCeEEEEEEEE-CCEEEECC
Confidence 8999999999999988643 47899999999999874 4679999999999999999999999999996 89999999
Q ss_pred CHHHHhhccccEEEEeeCCccccccCCCcccCCCCcccceEEEeec-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026142 156 TKLEEQKMKGFAYLVFPNSILSVLPEGSSLVQGEPMEHGIITSVTH-GAMSVDDYFHCLERGRAASAKLSDFLRRSLQSK 234 (243)
Q Consensus 156 t~~Ee~~~~~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~i~~~~~-g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~ 234 (243)
|.+|++.++..++++++.++ ..|. ++. +.++.+++.+++++|.++++++++++++++++.
T Consensus 180 t~~E~~~s~~dl~va~t~~~-i~mv------------------e~~~~~~se~~~~~al~~a~~~i~~l~~~q~~~~~~~ 240 (726)
T 4aid_A 180 TLDEMKESKMDLVVAGTADA-VMMV------------------ESEIQELSEEIVLGGVNFAHQQMQAVIDAIIDLAEHA 240 (726)
T ss_dssp CHHHHHTCSEEEEEEECSSC-EEEE------------------EEEESSBCHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred CHHHHhhCceeEEEEEeCCe-EEEE------------------EccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987654 2332 233 489999999999999999999999999999876
Q ss_pred ccc
Q 026142 235 LPG 237 (243)
Q Consensus 235 ~~~ 237 (243)
...
T Consensus 241 g~~ 243 (726)
T 4aid_A 241 AKE 243 (726)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 33
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.96 E-value=2.9e-27 Score=226.52 Aligned_cols=212 Identities=17% Similarity=0.064 Sum_probs=168.5
Q ss_pred CCCceEEeCCCC-CCCceEEEEe-CCeEEEEEEEcCccCCCCCCCCCceEEEEEec---------C-----CCCCCCCch
Q 026142 14 LRPLACSCSILH-RAHGSASWSQ-GDTKVLAAVYGPKAGTKKNENPEKASIEVIWK---------P-----RTGQIGKPE 77 (243)
Q Consensus 14 ~R~i~i~~~~l~-~a~GSa~v~~-G~T~Vi~~V~gp~~~~~~~~~~~~~~l~v~~~---------p-----~~~~~~~~~ 77 (243)
-|++.+++|.+. +|+||+++++ |+|+|+|+|++|...+|. .+...|+|+|. | +.|+++.++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~---~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e 112 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ---LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDA 112 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTT---CSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCC---CCCccEEEEEEecccccccCCCcccccCcCCChHH
Confidence 489999999974 7999999999 999999999997665442 23455888884 2 134455568
Q ss_pred HHHHHHHHHHHHhhhhcCCCCceEEEEEEEEEeCCCCh--HHHHHHHHHHHHHHcCCCCCCceeEEEEEEecCCeEEeCC
Q 026142 78 KEYEIILKRTLQSICILTINPNTTTSVIIQVVHDDGAL--LPCAINAACAALVDAGIPMKHLAVAICCCSAESGYCILDP 155 (243)
Q Consensus 78 ~~l~~~l~~~l~~~~~~~~~~~~~i~i~v~vl~~dG~~--~~a~~~a~~~AL~~a~ip~~~~~~avt~~~~~~~~~lvDP 155 (243)
++++++|+|.|++++.. +| +..++|+++||++||+. ..+++||+++||.+++|||+++++||++|++ +|.+++||
T Consensus 113 ~l~~RlIdR~LRplfp~-~~-~~evqv~~~Vls~D~~~~~~~~ai~gAs~AL~~s~iP~~~~vaav~vg~~-~g~~vlnP 189 (757)
T 1e3p_A 113 ILTCRLIDRPLRPSFKK-GL-RNEIQVVATIMALNPDHLYDVVAINAASASTQLAGLPFSGPIGGVRVALI-RGQWVAFP 189 (757)
T ss_dssp HHHHHHHHHHHGGGBCT-TB-CEEEEEEEEEEECCTTSCCHHHHHHHHHHHHHHTTSSBCCCCEEEEEEEE-TTEEEESC
T ss_pred HHHHHHHCCcchhcccc-CC-CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhccCCCCCCceEEEEEEEE-CCEEEECC
Confidence 89999999999999875 33 46899999999999865 9999999999999999999999999999997 89999999
Q ss_pred CHHHHhhccccEEEEeeC----CccccccCCCcccCCCCcccceEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 156 TKLEEQKMKGFAYLVFPN----SILSVLPEGSSLVQGEPMEHGIITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSL 231 (243)
Q Consensus 156 t~~Ee~~~~~~~~v~~~~----~~~~~~~k~~~~~~~~~~~~~~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l 231 (243)
|..|++.++..++++++. .+...|.+..++++. ..+.....+.++.+++.+++++|.++++++++++++++
T Consensus 190 t~~e~~~s~~dl~va~t~~~~~~~~i~mvE~q~t~~~-----~~~~~~~~~~~se~~l~~al~~a~~~i~~l~~~q~~~~ 264 (757)
T 1e3p_A 190 THTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKT-----IQLVKDGAEAPTEEVVAAGLDAAKPFIKVLCKAQADLA 264 (757)
T ss_dssp CHHHHTTEEEEEEEEEEECTTSCEEEEEEEEEECSSH-----HHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhcCceeEEEEeccccCCCCcEEEEEEeccccc-----ccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999873 222233332100000 00000014589999999999999999999999999998
Q ss_pred Hhhcc
Q 026142 232 QSKLP 236 (243)
Q Consensus 232 ~~~~~ 236 (243)
++...
T Consensus 265 ~~~~~ 269 (757)
T 1e3p_A 265 AKAAK 269 (757)
T ss_dssp HHHCC
T ss_pred HhcCC
Confidence 87654
No 34
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=43.54 E-value=14 Score=22.11 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 026142 203 AMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDL 239 (243)
Q Consensus 203 ~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~ 239 (243)
.++.+.+..+-++|........++|++++.+...+.-
T Consensus 15 rl~~el~~~l~~~a~~~g~s~s~~ir~ai~~~l~~~~ 51 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNLTLSDVCRLAIKEYLDNHD 51 (55)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 6889999999999988888888888888877665443
No 35
>1xpp_A TA1416, DNA-directed RNA polymerase subunit L; structural genomics, protein structure initiative, MCSG; 1.60A {Thermoplasma acidophilum} SCOP: d.74.3.2
Probab=33.56 E-value=85 Score=22.49 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=34.8
Q ss_pred eEEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 026142 195 IITSVTHGAMSVDDYFHCLERGRAASAKLSDFLRRSLQSKLPGDLSK 241 (243)
Q Consensus 195 ~i~~~~~g~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~~~~~~~~~~ 241 (243)
.+.....|..+.+.|.++++--.+.|..+.+.++.++++......-|
T Consensus 64 ~lrIqT~~~~p~eaL~~al~~L~~~~~~l~~~f~~a~~~~~~~~~~~ 110 (115)
T 1xpp_A 64 QIYVRVKSGKPQSAIKRAVRKLSKLYEDLGTQFQKEFQRYESDHMIK 110 (115)
T ss_dssp EEEEEESSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhheee
Confidence 44555666558899999999999999999999999888775554443
No 36
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=20.22 E-value=66 Score=18.91 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026142 203 AMSVDDYFHCLERGRAASAKLSDFLRRSLQ 232 (243)
Q Consensus 203 ~~~~~~l~~~l~~a~~~~~~l~~~i~~~l~ 232 (243)
.+++++...+-+.|......+.+++++++.
T Consensus 21 Rlt~eE~~~l~~~A~~~g~s~SeyiR~~~l 50 (51)
T 2ba3_A 21 RFSPVEDETIRKKAEDSGLTVSAYIRNAAL 50 (51)
T ss_dssp EECHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 689999999999999998889999998763
Done!