Query 026143
Match_columns 243
No_of_seqs 259 out of 1498
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 04:17:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 5.9E-41 1.3E-45 282.5 5.7 162 1-162 1-189 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.4E-34 5.2E-39 208.4 4.9 74 2-76 1-74 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 1.9E-31 4E-36 196.0 5.7 78 2-79 1-78 (83)
4 smart00432 MADS MADS domain. 100.0 1.4E-30 2.9E-35 178.7 4.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 8.1E-30 1.8E-34 175.0 4.0 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.6E-28 3.4E-33 163.4 2.3 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.9 8E-21 1.7E-25 144.4 11.4 91 83-173 10-100 (100)
8 KOG0015 Regulator of arginine 99.8 2.8E-20 6.1E-25 162.1 3.0 66 2-68 63-128 (338)
9 COG5068 ARG80 Regulator of arg 99.5 8.3E-15 1.8E-19 133.3 4.1 66 1-67 81-146 (412)
10 PF06005 DUF904: Protein of un 94.5 0.39 8.5E-06 34.2 8.1 50 119-173 1-50 (72)
11 PF10584 Proteasome_A_N: Prote 89.1 0.1 2.2E-06 28.8 -0.2 15 42-56 2-16 (23)
12 PRK04098 sec-independent trans 87.2 0.27 5.8E-06 40.2 1.0 31 42-75 14-44 (158)
13 PF08317 Spc7: Spc7 kinetochor 87.0 16 0.00035 33.2 12.6 63 114-176 201-265 (325)
14 PF06698 DUF1192: Protein of u 86.9 1.1 2.3E-05 30.7 3.6 31 110-140 12-42 (59)
15 smart00787 Spc7 Spc7 kinetocho 85.0 14 0.00031 33.6 11.1 64 114-177 196-261 (312)
16 COG3074 Uncharacterized protei 84.8 12 0.00025 26.5 8.0 50 119-173 1-50 (79)
17 cd07429 Cby_like Chibby, a nuc 84.0 1.9 4.1E-05 33.1 4.2 26 148-173 72-97 (108)
18 PRK15422 septal ring assembly 82.0 16 0.00034 26.4 7.9 43 119-166 1-43 (79)
19 PF01166 TSC22: TSC-22/dip/bun 80.1 4.5 9.7E-05 27.5 4.4 25 145-169 18-42 (59)
20 PRK13169 DNA replication intia 80.1 14 0.0003 28.5 7.7 49 121-174 7-55 (110)
21 PF06156 DUF972: Protein of un 79.5 16 0.00034 28.0 7.8 48 122-174 8-55 (107)
22 PF14662 CCDC155: Coiled-coil 79.3 38 0.00082 28.7 11.2 76 88-174 18-93 (193)
23 PF07926 TPR_MLP1_2: TPR/MLP1/ 77.9 31 0.00068 27.0 10.1 29 145-173 102-130 (132)
24 PRK10884 SH3 domain-containing 75.8 49 0.0011 28.3 10.7 23 89-111 90-112 (206)
25 TIGR02338 gimC_beta prefoldin, 72.0 41 0.00088 25.5 9.7 46 127-173 61-106 (110)
26 PRK10884 SH3 domain-containing 71.4 33 0.00072 29.3 8.6 20 88-107 96-115 (206)
27 PF07106 TBPIP: Tat binding pr 69.1 27 0.00058 28.5 7.4 50 89-142 83-132 (169)
28 COG2433 Uncharacterized conser 68.8 45 0.00097 33.1 9.7 85 89-175 419-508 (652)
29 PF04849 HAP1_N: HAP1 N-termin 66.7 37 0.00081 30.8 8.3 86 89-174 178-267 (306)
30 KOG4797 Transcriptional regula 66.5 28 0.00061 26.7 6.3 24 145-168 71-94 (123)
31 COG4467 Regulator of replicati 65.9 32 0.0007 26.4 6.5 48 121-173 7-54 (114)
32 PRK11637 AmiB activator; Provi 63.6 1E+02 0.0023 28.9 11.2 19 123-141 76-94 (428)
33 KOG0804 Cytoplasmic Zn-finger 62.3 71 0.0015 30.6 9.4 36 135-170 376-411 (493)
34 PF01166 TSC22: TSC-22/dip/bun 61.0 7.8 0.00017 26.4 2.2 30 142-171 5-37 (59)
35 PRK09343 prefoldin subunit bet 60.4 78 0.0017 24.5 8.6 43 131-174 69-111 (121)
36 PF06156 DUF972: Protein of un 59.9 68 0.0015 24.5 7.5 31 144-174 18-48 (107)
37 smart00338 BRLZ basic region l 57.3 58 0.0012 22.0 6.6 38 135-176 17-54 (65)
38 PF10504 DUF2452: Protein of u 57.2 54 0.0012 26.9 6.8 43 120-162 28-73 (159)
39 cd00632 Prefoldin_beta Prefold 56.7 78 0.0017 23.6 7.4 42 131-173 61-102 (105)
40 KOG4797 Transcriptional regula 55.0 23 0.0005 27.2 4.1 41 130-170 49-89 (123)
41 PRK13824 replication initiatio 53.6 31 0.00068 32.5 5.7 95 35-142 104-213 (404)
42 PF15397 DUF4618: Domain of un 53.5 1.1E+02 0.0025 27.0 8.8 35 140-174 185-219 (258)
43 KOG1962 B-cell receptor-associ 53.5 78 0.0017 27.3 7.6 54 120-173 156-211 (216)
44 TIGR02449 conserved hypothetic 53.4 74 0.0016 22.1 7.7 51 123-173 1-53 (65)
45 PF14645 Chibby: Chibby family 52.9 24 0.00051 27.4 4.0 25 148-172 71-95 (116)
46 PF00170 bZIP_1: bZIP transcri 51.4 73 0.0016 21.5 6.6 36 135-174 17-52 (64)
47 KOG0971 Microtubule-associated 50.4 3.3E+02 0.0072 28.8 12.5 53 88-140 328-389 (1243)
48 PRK01919 tatB sec-independent 50.4 9.6 0.00021 31.5 1.5 28 43-73 15-42 (169)
49 PF07716 bZIP_2: Basic region 50.2 70 0.0015 20.9 6.7 37 134-174 15-51 (54)
50 PRK04654 sec-independent trans 49.8 2.8 6.1E-05 35.9 -1.7 28 43-73 15-42 (214)
51 PF07888 CALCOCO1: Calcium bin 49.0 2.8E+02 0.006 27.4 11.6 26 147-172 212-237 (546)
52 PF12925 APP_E2: E2 domain of 48.6 1.7E+02 0.0037 24.8 10.4 94 60-174 5-100 (193)
53 PF05529 Bap31: B-cell recepto 48.5 1.3E+02 0.0029 24.8 8.3 53 121-173 124-186 (192)
54 PF09789 DUF2353: Uncharacteri 48.2 1.6E+02 0.0035 26.9 9.2 42 132-174 71-112 (319)
55 PF10211 Ax_dynein_light: Axon 47.3 1.2E+02 0.0027 25.3 7.8 11 63-73 93-103 (189)
56 PRK13169 DNA replication intia 45.7 1.3E+02 0.0028 23.2 7.0 30 144-173 18-47 (110)
57 KOG1853 LIS1-interacting prote 45.6 1.4E+02 0.003 26.7 7.9 50 122-173 133-182 (333)
58 smart00030 CLb CLUSTERIN Beta 45.0 56 0.0012 27.9 5.3 72 115-187 8-91 (206)
59 PF10623 PilI: Plasmid conjuga 44.3 22 0.00048 25.6 2.4 32 42-73 8-41 (83)
60 PF01093 Clusterin: Clusterin; 44.0 51 0.0011 31.5 5.5 61 115-175 2-71 (436)
61 PF09744 Jnk-SapK_ap_N: JNK_SA 43.7 1.8E+02 0.0039 23.8 8.5 28 146-173 87-114 (158)
62 smart00340 HALZ homeobox assoc 43.1 56 0.0012 20.8 3.8 25 151-175 8-32 (44)
63 PF14968 CCDC84: Coiled coil p 43.1 1.8E+02 0.0039 26.8 8.7 36 36-72 61-98 (336)
64 PF08781 DP: Transcription fac 42.9 1.7E+02 0.0038 23.5 7.6 46 122-169 1-46 (142)
65 PF06005 DUF904: Protein of un 42.6 1.2E+02 0.0026 21.4 6.2 32 142-173 12-43 (72)
66 PF03980 Nnf1: Nnf1 ; InterPr 41.8 87 0.0019 23.5 5.6 46 116-174 61-106 (109)
67 PF08614 ATG16: Autophagy prot 41.6 2.1E+02 0.0045 23.8 10.6 23 151-173 161-183 (194)
68 COG5068 ARG80 Regulator of arg 41.4 13 0.00029 34.9 1.2 60 8-73 18-77 (412)
69 PF04977 DivIC: Septum formati 40.2 70 0.0015 22.0 4.6 29 146-174 22-50 (80)
70 PF07888 CALCOCO1: Calcium bin 40.2 3.8E+02 0.0082 26.5 11.4 30 31-61 78-114 (546)
71 KOG0709 CREB/ATF family transc 40.1 55 0.0012 31.4 5.0 24 151-174 289-312 (472)
72 COG4831 Roadblock/LC7 domain [ 39.9 20 0.00044 26.9 1.7 29 31-60 4-32 (109)
73 PF04880 NUDE_C: NUDE protein, 39.1 63 0.0014 26.7 4.7 43 124-171 2-47 (166)
74 PRK00888 ftsB cell division pr 39.0 91 0.002 23.6 5.3 28 146-173 32-59 (105)
75 cd00187 TOP4c DNA Topoisomeras 38.4 3.5E+02 0.0076 25.9 10.3 26 44-73 302-327 (445)
76 TIGR02894 DNA_bind_RsfA transc 38.2 2.3E+02 0.0049 23.4 11.7 59 116-174 77-137 (161)
77 PF14009 DUF4228: Domain of un 38.2 32 0.0007 27.5 2.9 34 40-74 14-47 (181)
78 PF01920 Prefoldin_2: Prefoldi 37.9 1.6E+02 0.0034 21.4 7.3 26 147-172 75-100 (106)
79 KOG0837 Transcriptional activa 37.2 1.3E+02 0.0029 26.7 6.6 51 121-173 201-252 (279)
80 KOG0963 Transcription factor/C 37.1 2.7E+02 0.0059 27.8 9.3 82 93-174 122-208 (629)
81 KOG4643 Uncharacterized coiled 36.9 88 0.0019 33.0 6.2 49 130-178 282-331 (1195)
82 PF12018 DUF3508: Domain of un 36.8 14 0.0003 33.0 0.5 37 19-65 210-246 (281)
83 TIGR01478 STEVOR variant surfa 35.9 48 0.001 29.8 3.7 102 7-146 25-127 (295)
84 PF09941 DUF2173: Uncharacteri 35.9 25 0.00054 27.0 1.7 26 33-59 4-29 (108)
85 PF04859 DUF641: Plant protein 34.8 2.3E+02 0.005 22.5 8.8 51 120-171 81-131 (131)
86 cd02980 TRX_Fd_family Thioredo 34.8 28 0.00061 23.9 1.8 31 39-70 47-77 (77)
87 PF10243 MIP-T3: Microtubule-b 34.7 13 0.00028 36.3 0.0 57 86-147 471-527 (539)
88 cd03064 TRX_Fd_NuoE TRX-like [ 34.5 24 0.00051 24.9 1.3 30 38-70 51-80 (80)
89 PF09278 MerR-DNA-bind: MerR, 34.4 1.4E+02 0.003 19.7 5.5 46 118-164 14-59 (65)
90 PRK11637 AmiB activator; Provi 34.4 4E+02 0.0086 25.0 11.4 15 124-138 84-98 (428)
91 PHA02109 hypothetical protein 34.2 86 0.0019 26.3 4.7 106 41-163 103-222 (233)
92 KOG3759 Uncharacterized RUN do 34.1 3E+02 0.0066 26.7 8.8 52 115-173 198-252 (621)
93 COG0139 HisI Phosphoribosyl-AM 33.7 9.9 0.00021 29.3 -0.8 27 27-53 69-95 (111)
94 cd01109 HTH_YyaN Helix-Turn-He 33.3 2.1E+02 0.0045 21.4 6.6 53 118-171 57-109 (113)
95 KOG0183 20S proteasome, regula 33.0 25 0.00054 30.3 1.4 19 41-59 4-24 (249)
96 PF05700 BCAS2: Breast carcino 32.9 3E+02 0.0065 23.5 8.2 71 88-163 146-218 (221)
97 TIGR02894 DNA_bind_RsfA transc 32.6 2E+02 0.0043 23.7 6.5 23 88-110 107-129 (161)
98 PF04566 RNA_pol_Rpb2_4: RNA p 32.4 17 0.00037 25.0 0.3 31 22-54 23-54 (63)
99 PF09798 LCD1: DNA damage chec 32.1 2.2E+02 0.0049 28.7 8.1 53 122-174 4-59 (654)
100 PHA03155 hypothetical protein; 31.7 72 0.0016 24.7 3.6 22 150-171 10-31 (115)
101 COG0216 PrfA Protein chain rel 31.4 3.3E+02 0.0072 25.3 8.4 91 62-167 8-102 (363)
102 PF02416 MttA_Hcf106: mttA/Hcf 31.3 5.8 0.00012 26.4 -2.1 29 43-74 12-40 (53)
103 cd04769 HTH_MerR2 Helix-Turn-H 30.7 1.6E+02 0.0034 22.3 5.5 54 118-171 56-109 (116)
104 PHA01750 hypothetical protein 30.6 1.9E+02 0.0041 20.2 6.9 10 147-156 62-71 (75)
105 PF11629 Mst1_SARAH: C termina 30.5 63 0.0014 21.2 2.7 15 115-129 4-18 (49)
106 KOG0182 20S proteasome, regula 30.5 27 0.00059 30.1 1.3 17 40-56 8-24 (246)
107 PRK13729 conjugal transfer pil 29.9 5.2E+02 0.011 25.0 13.5 30 144-173 93-122 (475)
108 COG1579 Zn-ribbon protein, pos 29.7 3.9E+02 0.0084 23.5 11.6 52 120-171 87-140 (239)
109 KOG0250 DNA repair protein RAD 29.6 7.3E+02 0.016 26.7 11.4 17 44-60 621-637 (1074)
110 PF04111 APG6: Autophagy prote 29.5 4.3E+02 0.0093 23.9 11.2 19 122-140 64-82 (314)
111 PF04945 YHS: YHS domain; Int 29.4 28 0.00062 22.0 0.9 26 39-64 6-34 (47)
112 PRK14860 tatA twin arginine tr 29.4 10 0.00022 26.3 -1.2 38 34-76 8-45 (64)
113 TIGR02209 ftsL_broad cell divi 28.6 1.7E+02 0.0037 20.5 5.1 29 145-173 28-56 (85)
114 PF07544 Med9: RNA polymerase 28.4 2.3E+02 0.0049 20.3 7.1 43 88-133 24-70 (83)
115 PF06937 EURL: EURL protein; 28.4 71 0.0015 28.5 3.5 36 104-139 204-239 (285)
116 PF07676 PD40: WD40-like Beta 27.9 70 0.0015 18.8 2.5 21 41-61 9-29 (39)
117 TIGR03752 conj_TIGR03752 integ 27.8 5.7E+02 0.012 24.8 9.9 45 125-173 97-141 (472)
118 PRK09822 lipopolysaccharide co 27.6 52 0.0011 28.9 2.5 39 21-60 120-161 (269)
119 PF01502 PRA-CH: Phosphoribosy 27.6 9.4 0.0002 27.4 -1.7 36 18-53 19-63 (75)
120 PF02151 UVR: UvrB/uvrC motif; 27.0 1.5E+02 0.0032 17.7 4.0 33 123-155 3-35 (36)
121 PF10226 DUF2216: Uncharacteri 26.8 2.7E+02 0.0058 23.6 6.5 15 128-142 47-61 (195)
122 KOG0946 ER-Golgi vesicle-tethe 26.6 7E+02 0.015 26.1 10.4 81 88-173 614-696 (970)
123 TIGR00606 rad50 rad50. This fa 26.4 7.9E+02 0.017 26.9 11.7 53 119-172 822-881 (1311)
124 COG4467 Regulator of replicati 26.1 1.3E+02 0.0028 23.1 4.1 29 146-174 20-48 (114)
125 PF08946 Osmo_CC: Osmosensory 26.0 1.6E+02 0.0035 19.0 3.9 20 146-165 24-43 (46)
126 PF11291 DUF3091: Protein of u 25.7 3E+02 0.0064 20.8 6.0 49 88-136 21-69 (100)
127 cd01107 HTH_BmrR Helix-Turn-He 25.4 2.9E+02 0.0062 20.6 6.1 48 118-171 58-105 (108)
128 PF11232 Med25: Mediator compl 25.3 81 0.0018 25.7 3.1 35 37-71 109-150 (152)
129 PRK03918 chromosome segregatio 25.1 3E+02 0.0065 28.2 8.0 33 38-70 120-154 (880)
130 PF04899 MbeD_MobD: MbeD/MobD 25.1 2.5E+02 0.0054 19.7 7.6 48 126-173 3-60 (70)
131 COG4917 EutP Ethanolamine util 25.0 41 0.00089 26.9 1.3 24 35-58 59-82 (148)
132 KOG4637 Adaptor for phosphoino 24.7 44 0.00096 31.2 1.6 43 33-75 367-413 (464)
133 smart00338 BRLZ basic region l 24.4 2.1E+02 0.0045 19.2 4.7 26 146-171 38-63 (65)
134 TIGR01069 mutS2 MutS2 family p 23.8 8.1E+02 0.018 25.2 11.1 32 122-153 539-570 (771)
135 PHA02592 52 DNA topisomerase I 23.6 6.5E+02 0.014 24.1 11.2 45 23-73 282-326 (439)
136 PF04999 FtsL: Cell division p 23.6 2.3E+02 0.005 20.5 5.1 29 145-173 39-67 (97)
137 cd04787 HTH_HMRTR_unk Helix-Tu 23.4 3.5E+02 0.0076 20.9 6.4 55 118-173 57-111 (133)
138 PF07851 TMPIT: TMPIT-like pro 23.3 5.9E+02 0.013 23.5 8.6 43 92-140 4-46 (330)
139 PF04873 EIN3: Ethylene insens 23.3 27 0.00059 32.4 0.0 39 25-64 53-92 (354)
140 KOG4673 Transcription factor T 23.0 7.2E+02 0.016 25.6 9.5 77 92-175 537-625 (961)
141 PF10473 CENP-F_leu_zip: Leuci 23.0 4E+02 0.0087 21.3 10.5 43 132-175 72-114 (140)
142 KOG4001 Axonemal dynein light 22.7 5E+02 0.011 22.4 8.9 16 158-173 238-253 (259)
143 KOG0184 20S proteasome, regula 22.7 44 0.00096 29.0 1.2 24 36-59 3-28 (254)
144 PF02824 TGS: TGS domain; Int 22.4 1.3E+02 0.0028 20.1 3.2 26 45-70 1-26 (60)
145 PF04645 DUF603: Protein of un 22.2 4.7E+02 0.01 21.9 8.7 31 123-153 139-169 (181)
146 TIGR03545 conserved hypothetic 22.2 7.7E+02 0.017 24.4 9.9 50 89-140 179-230 (555)
147 PF10491 Nrf1_DNA-bind: NLS-bi 22.1 1.2E+02 0.0027 26.0 3.7 48 25-73 34-88 (214)
148 PF03785 Peptidase_C25_C: Pept 22.0 38 0.00083 24.6 0.6 24 33-56 17-40 (81)
149 cd04770 HTH_HMRTR Helix-Turn-H 22.0 3.5E+02 0.0076 20.4 6.1 51 119-170 58-108 (123)
150 TIGR01950 SoxR redox-sensitive 22.0 2.5E+02 0.0054 22.3 5.3 54 118-171 57-110 (142)
151 PF12537 DUF3735: Protein of u 21.9 1.5E+02 0.0033 20.7 3.6 25 121-145 47-71 (72)
152 PF10018 Med4: Vitamin-D-recep 21.9 4.6E+02 0.01 21.7 8.8 52 121-174 4-55 (188)
153 PF14723 SSFA2_C: Sperm-specif 21.9 91 0.002 26.0 2.8 19 122-140 159-177 (179)
154 PF11365 DUF3166: Protein of u 21.9 3.5E+02 0.0076 20.3 6.5 32 144-175 11-42 (96)
155 PF04849 HAP1_N: HAP1 N-termin 21.8 6.2E+02 0.013 23.1 12.2 53 122-174 97-186 (306)
156 PF13815 Dzip-like_N: Iguana/D 21.8 3.7E+02 0.008 20.5 6.9 25 148-172 80-104 (118)
157 PTZ00370 STEVOR; Provisional 21.6 1.1E+02 0.0025 27.5 3.6 27 37-72 42-68 (296)
158 cd01106 HTH_TipAL-Mta Helix-Tu 21.5 3.3E+02 0.0072 19.9 5.8 15 118-132 57-71 (103)
159 PF15254 CCDC14: Coiled-coil d 21.5 9.3E+02 0.02 25.0 11.6 80 88-172 390-479 (861)
160 PF14932 HAUS-augmin3: HAUS au 21.3 5.5E+02 0.012 22.4 8.3 15 158-172 124-138 (256)
161 PRK15422 septal ring assembly 21.3 3.3E+02 0.0071 19.7 5.3 32 142-173 12-43 (79)
162 KOG4252 GTP-binding protein [S 21.3 51 0.0011 28.0 1.2 29 38-73 90-118 (246)
163 KOG2751 Beclin-like protein [S 21.1 5.6E+02 0.012 24.6 8.1 26 122-147 200-225 (447)
164 KOG0930 Guanine nucleotide exc 21.0 2E+02 0.0043 26.1 4.9 43 116-167 8-50 (395)
165 TIGR01411 tatAE twin arginine- 20.9 14 0.0003 23.9 -1.8 29 43-74 13-41 (47)
166 PRK09413 IS2 repressor TnpA; R 20.8 2.6E+02 0.0055 21.3 5.1 28 146-173 76-103 (121)
167 KOG4360 Uncharacterized coiled 20.7 6.7E+02 0.015 24.7 8.6 21 147-167 239-259 (596)
168 PRK10227 DNA-binding transcrip 20.5 4E+02 0.0086 20.9 6.2 53 118-171 57-109 (135)
169 PF01257 2Fe-2S_thioredx: Thio 20.4 91 0.002 24.8 2.5 31 38-71 115-145 (145)
170 PF03428 RP-C: Replication pro 20.3 1.3E+02 0.0028 25.0 3.5 64 41-111 96-170 (177)
171 PF09158 MotCF: Bacteriophage 20.2 19 0.00041 27.4 -1.4 53 5-73 19-72 (103)
172 PF15243 ANAPC15: Anaphase-pro 20.2 1.3E+02 0.0027 22.5 3.0 22 122-143 28-49 (92)
173 PF12329 TMF_DNA_bd: TATA elem 20.1 3.2E+02 0.007 19.2 5.7 26 148-173 33-58 (74)
174 KOG4643 Uncharacterized coiled 20.1 1.1E+03 0.024 25.4 10.5 13 92-104 481-493 (1195)
175 cd01668 TGS_RelA_SpoT TGS_RelA 20.1 1E+02 0.0022 19.7 2.3 26 45-70 1-26 (60)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=5.9e-41 Score=282.53 Aligned_cols=162 Identities=49% Similarity=0.644 Sum_probs=132.6
Q ss_pred CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeeccc-chhhHHHhhhhcccCccc
Q 026143 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMLKTLERYQKCSYGAVE 79 (243)
Q Consensus 1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~-sm~~ileRY~~~~~~~~~ 79 (243)
||||||+|+||||+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999988765 499999999987665443
Q ss_pred cCCCchhh---------------------HhHHHHHHHhHHHHHHHhh---hhhhhccCCCCCCCH-HHHHHHHHHHHHH
Q 026143 80 VNKPAKEL---------------------ESSYREYLKLKTRFESLQR---TQRNLLGEDLGPLNS-KELEQLERQLESS 134 (243)
Q Consensus 80 ~~~~~~e~---------------------~~~~~E~~kLk~kie~Lq~---~~r~l~GedL~~Ls~-~EL~~LE~qLe~s 134 (243)
......+. ..+..+...++...+.|+. .+++++|++|.+++. .+|..++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 33222221 1123344555666666653 488999999999999 9999999999999
Q ss_pred hHHHHHHHHHhHHHHHH-HHHHHHHHHHH
Q 026143 135 LKHVRSTKTQYMLDQLS-DLQNKEQLLLD 162 (243)
Q Consensus 135 L~~IR~rK~qlm~e~i~-~Lk~ke~~L~e 162 (243)
+..+|..+...+.+++. .++.++..+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEA 189 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhccc
Confidence 99999999999888876 55555544443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=2.4e-34 Score=208.43 Aligned_cols=74 Identities=77% Similarity=1.093 Sum_probs=71.6
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccC
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYG 76 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~ 76 (243)
||+||+|++|||+.+|+|||+||++||||||+||||||||+||||||||+|++|+|+|++ +..||+||...+..
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s-~~~vl~ry~~~~~~ 74 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS-MEKIIERYQKTSGS 74 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC-HHHHHHHHHhcccc
Confidence 899999999999999999999999999999999999999999999999999999999987 89999999998754
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=1.9e-31 Score=196.03 Aligned_cols=78 Identities=51% Similarity=0.766 Sum_probs=72.3
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCccc
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVE 79 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~~ 79 (243)
||+||+|++|+|+.+|+|||+||+.||||||+||||||||+||+|||||+|++|+|++++++..+|+||...+.....
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 78 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERK 78 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhh
Confidence 899999999999999999999999999999999999999999999999999999988765599999999987655443
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.4e-30 Score=178.73 Aligned_cols=59 Identities=78% Similarity=1.156 Sum_probs=57.8
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecc
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~ 60 (243)
||+||+|++|+|+..|++||+||+.||+|||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=8.1e-30 Score=175.00 Aligned_cols=59 Identities=78% Similarity=1.174 Sum_probs=57.5
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecc
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~ 60 (243)
||+||+|++|+|+..|++||+||+.||+|||+||||||||+||+|||||+|++|+|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999864
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=1.6e-28 Score=163.36 Aligned_cols=51 Identities=67% Similarity=0.998 Sum_probs=47.2
Q ss_pred eeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeec
Q 026143 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 (243)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s 59 (243)
|+|||+..|++||+|||.||||||+|||+|||||||||||||+|++|.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.85 E-value=8e-21 Score=144.37 Aligned_cols=91 Identities=45% Similarity=0.604 Sum_probs=86.3
Q ss_pred CchhhHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 026143 83 PAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLD 162 (243)
Q Consensus 83 ~~~e~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~e 162 (243)
++...+.|..++.+|+.+++.|+..+|+++|+||++||++||++||++|+.||.+||+||+++|.++|..|++|++.|.+
T Consensus 10 ~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 10 WDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 026143 163 TNRALTIKLDE 173 (243)
Q Consensus 163 eN~~L~~kl~~ 173 (243)
+|..|+.++++
T Consensus 90 en~~L~~~~~e 100 (100)
T PF01486_consen 90 ENNQLRQKIEE 100 (100)
T ss_pred HHHHHHHHhcC
Confidence 99999998864
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.79 E-value=2.8e-20 Score=162.07 Aligned_cols=66 Identities=41% Similarity=0.747 Sum_probs=62.2
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHH
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLE 68 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ile 68 (243)
||.||+|++|||+..|.|||||||.|+||||+|||||.+.+|-|+|.|.+|-+|.|+++- ++.||.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpK-Lep~i~ 128 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPK-LEPMIT 128 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEecccc-cccccc
Confidence 799999999999999999999999999999999999999999999999999999999985 666653
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.51 E-value=8.3e-15 Score=133.26 Aligned_cols=66 Identities=36% Similarity=0.599 Sum_probs=61.9
Q ss_pred CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHH
Q 026143 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTL 67 (243)
Q Consensus 1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~il 67 (243)
|||+|+.|.+|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|+++. .+.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~-~e~v~ 146 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK-LESVV 146 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc-ccccc
Confidence 7899999999999999999999999999999999999999999999999999999999886 44443
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.47 E-value=0.39 Score=34.16 Aligned_cols=50 Identities=20% Similarity=0.346 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+|++.|.+||..+..++..|. ++..+++.|+.+-..|.++|..|+.....
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~ 50 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQ 50 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 578899999999999999995 45567788888766666666666655443
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=89.07 E-value=0.1 Score=28.82 Aligned_cols=15 Identities=27% Similarity=0.700 Sum_probs=11.9
Q ss_pred ceeeeEeeCCCCcee
Q 026143 42 EVALIIFSNRGKLYE 56 (243)
Q Consensus 42 eValIifS~~Gkl~e 56 (243)
|-.+.+|||.|+||.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345678999999985
No 12
>PRK04098 sec-independent translocase; Provisional
Probab=87.21 E-value=0.27 Score=40.25 Aligned_cols=31 Identities=23% Similarity=0.219 Sum_probs=23.4
Q ss_pred ceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143 42 EVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY 75 (243)
Q Consensus 42 eValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~ 75 (243)
=||||||+| +||+++.. .+-+.+-.|++...
T Consensus 14 vVaLlvfGP-~KLP~~~r--~lGk~ir~~K~~~~ 44 (158)
T PRK04098 14 VVAIIFLGP-DKLPQAMV--DIAKFFKAVKKTIN 44 (158)
T ss_pred HHHHhhcCc-hHHHHHHH--HHHHHHHHHHHHHH
Confidence 489999998 59988764 37777877777543
No 13
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=86.99 E-value=16 Score=33.23 Aligned_cols=63 Identities=21% Similarity=0.407 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 114 EDLGPLNSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 114 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
..++.++..+|..|-..|...-..|..+|..+ +..++..++.+...+.++-..+...+.+...
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999998887765 4577777777777777777777777766543
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=86.91 E-value=1.1 Score=30.73 Aligned_cols=31 Identities=32% Similarity=0.477 Sum_probs=24.5
Q ss_pred hhccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 026143 110 NLLGEDLGPLNSKELEQLERQLESSLKHVRS 140 (243)
Q Consensus 110 ~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~ 140 (243)
+.+|+||+.||++||..--..|+.-+.+++.
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEA 42 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999866666666665554
No 15
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=84.98 E-value=14 Score=33.56 Aligned_cols=64 Identities=19% Similarity=0.352 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 114 EDLGPLNSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 114 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
++++.++.++|..+-..|..-...|...+.++ +.+++..+..+.....+.-..+...+.+....
T Consensus 196 ~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~ 261 (312)
T smart00787 196 DELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK 261 (312)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999988877765 44666666666666666666666666665443
No 16
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.81 E-value=12 Score=26.52 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+|++=|.+||..+..++.-| +|+.-+|++|+.|-..|..+-..++...++
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 57778889999988888887 566677788887776666665555444443
No 17
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.97 E-value=1.9 Score=33.13 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..+..|++|.+.|+|||+.|+-|++-
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKiev 97 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEV 97 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778889999999999998764
No 18
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.98 E-value=16 Score=26.44 Aligned_cols=43 Identities=14% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRA 166 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~ 166 (243)
+|++=|.+||..+..++..| .++.-+|++||.|-..|.+++..
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999988 56667778888776666666555
No 19
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.09 E-value=4.5 Score=27.51 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALTI 169 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~~ 169 (243)
.+.++|.+|..+...|+.||..|+.
T Consensus 18 vLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 18 VLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666776666677777766653
No 20
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=80.06 E-value=14 Score=28.49 Aligned_cols=49 Identities=31% Similarity=0.403 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
++-+.+||+++..-+..+..-|.+ +.+|-..-..|.-||..|+..+.+.
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888877777665543 3445455566777777777777763
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=79.49 E-value=16 Score=28.00 Aligned_cols=48 Identities=33% Similarity=0.447 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+.|.+||++|..-+..|..-|. ++..|-..-..|.-||..|+..|.+.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~-----~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKK-----QLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776666655443 23344444455566666666666654
No 22
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=79.26 E-value=38 Score=28.68 Aligned_cols=76 Identities=25% Similarity=0.358 Sum_probs=43.7
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L 167 (243)
..+..|+.+|+..++........+. + |+..|..++...=.-+ .+...+.+++++|+.--+.|.|+|+.|
T Consensus 18 ~~L~~en~kL~~~ve~~ee~na~L~-~--------e~~~L~~q~~s~Qqal--~~aK~l~eEledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 18 QKLADENAKLQRSVETAEEGNAQLA-E--------EITDLRKQLKSLQQAL--QKAKALEEELEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777666555442 2 3444444444332222 223346677777777777777777777
Q ss_pred HHHHHHH
Q 026143 168 TIKLDEI 174 (243)
Q Consensus 168 ~~kl~~~ 174 (243)
..+....
T Consensus 87 ~aq~rql 93 (193)
T PF14662_consen 87 LAQARQL 93 (193)
T ss_pred HHHHHHH
Confidence 6655443
No 23
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=77.92 E-value=31 Score=27.01 Aligned_cols=29 Identities=24% Similarity=0.355 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+..+|.+++++...|.++|+.|..+|+.
T Consensus 102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999888764
No 24
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.80 E-value=49 Score=28.27 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=12.6
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhh
Q 026143 89 SSYREYLKLKTRFESLQRTQRNL 111 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l 111 (243)
.....+.+++.+++.++....++
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666665544443
No 25
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=71.99 E-value=41 Score=25.48 Aligned_cols=46 Identities=20% Similarity=0.315 Sum_probs=30.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 127 LERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 127 LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
++...+.++..+..|+..+ ...|..|.++...|.+.-..++..+.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666533 677777777777777777777666654
No 26
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.45 E-value=33 Score=29.30 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=10.3
Q ss_pred HhHHHHHHHhHHHHHHHhhh
Q 026143 88 ESSYREYLKLKTRFESLQRT 107 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~ 107 (243)
..+..|+.+++.++..+...
T Consensus 96 p~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34555555555555554433
No 27
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.14 E-value=27 Score=28.46 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=23.1
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 026143 89 SSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTK 142 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK 142 (243)
.+..++..|+.++..|+.....+. ..++..||...-.+|+.-+..+.+|-
T Consensus 83 ~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL 132 (169)
T PF07106_consen 83 ELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKL 132 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443333 34556666655555555444444443
No 28
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.80 E-value=45 Score=33.13 Aligned_cols=85 Identities=25% Similarity=0.293 Sum_probs=54.6
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHH-----HHHHHhHHHHHHHHHHHHHHHHHH
Q 026143 89 SSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVR-----STKTQYMLDQLSDLQNKEQLLLDT 163 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR-----~rK~qlm~e~i~~Lk~ke~~L~ee 163 (243)
....++.++..+++.|+..+++|-.+ +..+- +++..|+..|+..-..++ .|+-+.+...|..|+++-..-...
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~-~ee~k-~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRE-LEELK-REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777766531 00011 566677777777766665 344556677788887776666666
Q ss_pred HHHHHHHHHHHh
Q 026143 164 NRALTIKLDEIN 175 (243)
Q Consensus 164 N~~L~~kl~~~~ 175 (243)
-..|..++....
T Consensus 497 ve~L~~~l~~l~ 508 (652)
T COG2433 497 VEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHH
Confidence 666777766644
No 29
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=66.68 E-value=37 Score=30.81 Aligned_cols=86 Identities=21% Similarity=0.310 Sum_probs=52.0
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhhccCCCCCCC--HHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHH
Q 026143 89 SSYREYLKLKTRFESLQRTQRNLLGEDLGPLN--SKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTN 164 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls--~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN 164 (243)
.+..|..+|+.+...++..-++++-++...|+ -..+..|...|.......+....++ +..+|.+|++|.+.+.-+|
T Consensus 178 ~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 178 QLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34444444444444444444445443322222 1344556666666666555555554 5688899999999999999
Q ss_pred HHHHHHHHHH
Q 026143 165 RALTIKLDEI 174 (243)
Q Consensus 165 ~~L~~kl~~~ 174 (243)
..|...|...
T Consensus 258 EeL~q~L~~s 267 (306)
T PF04849_consen 258 EELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 30
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=66.49 E-value=28 Score=26.72 Aligned_cols=24 Identities=21% Similarity=0.374 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALT 168 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~ 168 (243)
.+.++|.+|-.+...|++||..|+
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554
No 31
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=65.91 E-value=32 Score=26.37 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
++.+.+||++|-.-+..|-.-|.++ .+|-..-..|+=+|..|++.|.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 3567788888887777766655433 33333344555566666666655
No 32
>PRK11637 AmiB activator; Provisional
Probab=63.64 E-value=1e+02 Score=28.92 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRST 141 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~r 141 (243)
+|..|+.+|+..-..|+..
T Consensus 76 ~l~~l~~qi~~~~~~i~~~ 94 (428)
T PRK11637 76 QLKKQEEAISQASRKLRET 94 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444443
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.34 E-value=71 Score=30.59 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 135 LKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 135 L~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
.++|-++|-+-+...++.+++..+.+.|+|+.|.+-
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555556777777777777778888777654
No 34
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=61.04 E-value=7.8 Score=26.35 Aligned_cols=30 Identities=23% Similarity=0.262 Sum_probs=24.6
Q ss_pred HHHhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KTQYML---DQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 142 K~qlm~---e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
|++||. ++++-||.+...|.+.|..|..+-
T Consensus 5 KtHLm~AVrEEVevLK~~I~eL~~~n~~Le~EN 37 (59)
T PF01166_consen 5 KTHLMYAVREEVEVLKEQIAELEERNSQLEEEN 37 (59)
T ss_dssp CCHGGGT-TTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 889999999999999999997653
No 35
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.41 E-value=78 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 131 LESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 131 Le~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
.+.+...|..|+. .+...|..|.+++..|.+.-..++..|.+.
T Consensus 69 ~~e~~~~l~~r~E-~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 69 KTKVEKELKERKE-LLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555553 345778888888888888888877777664
No 36
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=59.87 E-value=68 Score=24.48 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 144 QYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 144 qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
..|.++|..||.....|.|+|..|+.+-+..
T Consensus 18 ~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 18 GQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999998776553
No 37
>smart00338 BRLZ basic region leucin zipper.
Probab=57.25 E-value=58 Score=22.02 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 135 LKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 135 L~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
-..-|.||. ..+.+|..+...|..+|..|..++.....
T Consensus 17 A~~~R~rKk----~~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 17 ARRSRERKK----AEIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566654 45678888888899999999888876543
No 38
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=57.19 E-value=54 Score=26.91 Aligned_cols=43 Identities=21% Similarity=0.369 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHHhHHHHHH---HHHhHHHHHHHHHHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRST---KTQYMLDQLSDLQNKEQLLLD 162 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~r---K~qlm~e~i~~Lk~ke~~L~e 162 (243)
+..||..|-++++.+-.-||++ |-.++.+||..|+++-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999865 445666777777766555444
No 39
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=56.72 E-value=78 Score=23.62 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=22.8
Q ss_pred HHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 131 LESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 131 Le~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+.+...+..++. .+...|..+.++...+..+-..|+.+|.+
T Consensus 61 ~~ea~~~Le~~~e-~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLE-TIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 23455566666666666666666666654
No 40
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=55.02 E-value=23 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=29.6
Q ss_pred HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 130 QLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 130 qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
.++.++.-|...-+-...++++-|+.+.+.|.+.|+.|+.+
T Consensus 49 KIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 49 KIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555544333334489999999999999999999765
No 41
>PRK13824 replication initiation protein RepC; Provisional
Probab=53.63 E-value=31 Score=32.53 Aligned_cols=95 Identities=21% Similarity=0.301 Sum_probs=59.7
Q ss_pred hhcccCcceeeeEe--eCCCCceeeeccc---------chhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHH
Q 026143 35 LSVLCDAEVALIIF--SNRGKLYEFCSSS---------SMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFES 103 (243)
Q Consensus 35 LSvLCdaeValIif--S~~Gkl~e~~s~~---------sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~ 103 (243)
|+.| +|.+||++ ||+||=|-+-..+ +..-++.||....... .+...-..++..|+.++..
T Consensus 104 la~L--veaGLI~rrDSpNGKRyarr~~~G~i~~AfGfDLsPL~~R~~El~~~A-------~~~~ae~~~~r~lr~~it~ 174 (404)
T PRK13824 104 LAAL--VEAGLIIRRDSPNGKRYARKGRGGEIEEAFGFDLAPLLARAEEFEALA-------EQVAAERKALRRLRERLTL 174 (404)
T ss_pred HHHH--HHCCCeEeecCCCCcccceeCCCCceeeeeccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 4445 45568888 8999988653221 2566777886643211 1112334567778888888
Q ss_pred Hhhhhhhhcc----CCCCCCCHHHHHHHHHHHHHHhHHHHHHH
Q 026143 104 LQRTQRNLLG----EDLGPLNSKELEQLERQLESSLKHVRSTK 142 (243)
Q Consensus 104 Lq~~~r~l~G----edL~~Ls~~EL~~LE~qLe~sL~~IR~rK 142 (243)
+.+..+.++- +.+.+ +...++..++..+..++.+.
T Consensus 175 ~rRdi~~li~~a~~~~~~~----~w~~~~~~~~~i~~~l~R~~ 213 (404)
T PRK13824 175 CRRDIAKLIEAAIEEGVPG----DWEGVEQRFRAIVARLPRRA 213 (404)
T ss_pred HHHHHHHHHHHHHhccCCC----cHHHHHHHHHHHHHHcCCCC
Confidence 8888887762 22222 47788888888888887443
No 42
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=53.54 E-value=1.1e+02 Score=27.05 Aligned_cols=35 Identities=11% Similarity=0.242 Sum_probs=26.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 140 STKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 140 ~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
.+.++.|..+|...++-...|.++...|+..++..
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777778888888888777764
No 43
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=53.53 E-value=78 Score=27.31 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRSTKTQ--YMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~rK~q--lm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
...|+..|+..++..-+......++ .|..|.+.+++.-..|.|+|+.|+.++.-
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 3456777777777666665544433 45677777777778888888888877654
No 44
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=53.36 E-value=74 Score=22.12 Aligned_cols=51 Identities=24% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRSTK--TQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~rK--~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
||+.||..++.=+.....=+ +.++.++...++..-..|.+.|..=+.+++.
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEa 53 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEA 53 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887776654322 2344444444444444444444444444443
No 45
>PF14645 Chibby: Chibby family
Probab=52.92 E-value=24 Score=27.40 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
.....++++.+.|.|||+.|+.|++
T Consensus 71 ~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 71 EENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777888888888888765
No 46
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=51.41 E-value=73 Score=21.46 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 135 LKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 135 L~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
-..-|.||. ..|.+|..+...|..+|..|...+...
T Consensus 17 Ar~~R~RKk----~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 17 ARRSRQRKK----QYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566664 556677777778888888877776654
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.45 E-value=3.3e+02 Score=28.77 Aligned_cols=53 Identities=34% Similarity=0.399 Sum_probs=35.6
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhh------ccCCCCCCCHHHHHHHHHH---HHHHhHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNL------LGEDLGPLNSKELEQLERQ---LESSLKHVRS 140 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l------~GedL~~Ls~~EL~~LE~q---Le~sL~~IR~ 140 (243)
+.++.|+.-++++++.|....--+ -|.|--..|.=++.+||+| |-.+|-+.|.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777665442211 2777777788888888877 6666666663
No 48
>PRK01919 tatB sec-independent translocase; Provisional
Probab=50.39 E-value=9.6 Score=31.54 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=20.4
Q ss_pred eeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 43 VALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 43 ValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
||||||+| .||++..- ++-+.+-+++++
T Consensus 15 VALiV~GP-ekLP~~aR--tlGk~i~k~Rr~ 42 (169)
T PRK01919 15 VALVVIGP-ERLPRVAR--TAGALFGRAQRY 42 (169)
T ss_pred HHHheeCc-hHhHHHHH--HHHHHHHHHHHH
Confidence 89999998 67877653 366677777664
No 49
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=50.17 E-value=70 Score=20.88 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=25.6
Q ss_pred HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 134 SLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 134 sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
|-.+-|.+|. ..+.+|..+...|..+|..|..++...
T Consensus 15 AA~r~R~rkk----~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 15 AARRSRQRKK----QREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554 455677888888889999988877653
No 50
>PRK04654 sec-independent translocase; Provisional
Probab=49.81 E-value=2.8 Score=35.87 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=19.6
Q ss_pred eeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 43 VALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 43 ValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
||||||+| .||.+..- .+-+.+-++++.
T Consensus 15 VALlV~GP-erLPe~aR--tlGk~irk~R~~ 42 (214)
T PRK04654 15 VALVVLGP-ERLPKAAR--FAGLWVRRARMQ 42 (214)
T ss_pred HHHHhcCc-hHHHHHHH--HHHHHHHHHHHH
Confidence 78999998 67777653 366666666653
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=49.04 E-value=2.8e+02 Score=27.42 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 147 LDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 147 ~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
..+..+++.+...|.++...|..+..
T Consensus 212 ~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 212 KEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666665553
No 52
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=48.58 E-value=1.7e+02 Score=24.84 Aligned_cols=94 Identities=18% Similarity=0.232 Sum_probs=58.3
Q ss_pred ccchhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHHHhhh-hhhhccCCCCCCCHHHHHHHHHHHHHHhHHH
Q 026143 60 SSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRT-QRNLLGEDLGPLNSKELEQLERQLESSLKHV 138 (243)
Q Consensus 60 ~~sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~Lq~~-~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~I 138 (243)
|.....++|.|..++... .+ ...|.+.+.+++.-.+. ...+ .+|...+|.+.. .|...
T Consensus 5 ~~~~~~~~D~Y~~~~~~~-------~E----h~~f~~Ak~rLe~~hr~r~~~V---------mkeW~eaE~~~~-~l~~~ 63 (193)
T PF12925_consen 5 PAPTSDAVDPYFEHPDPE-------NE----HQRFKEAKERLEEKHRERMTKV---------MKEWSEAEERYK-ELPKA 63 (193)
T ss_dssp ------HHHHHHHSSTTS-------TH----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHTTT-TSHHH
T ss_pred CCCCCCCCChHhhcCCCC-------ch----HHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH-hchhh
Confidence 334557779999876532 11 13344444444432222 1222 368888888887 56777
Q ss_pred HHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 139 RSTKTQYMLDQL-SDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 139 R~rK~qlm~e~i-~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
--.+.+.+...+ ...+++...|.+++..-+++|.+.
T Consensus 64 DPk~Ae~~k~~m~~rFQ~~v~aLE~e~~~er~qL~~~ 100 (193)
T PF12925_consen 64 DPKKAEQFKKEMTQRFQKTVQALEQEAAAERQQLVET 100 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776554 688999999999999999998763
No 53
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=48.48 E-value=1.3e+02 Score=24.81 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHH----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLERQLESSLKHVRST----------KTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~r----------K~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+.+|..++..++..-++..+. +..-..+++++|+++......+...|+++.+.
T Consensus 124 i~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 124 IKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777776666655422 23345567777777766666666677666654
No 54
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.23 E-value=1.6e+02 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=32.2
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 132 ESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 132 e~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
..-|...|.+.. -+..++..|+++...++.+++.|+.++...
T Consensus 71 a~lL~~sre~Nk-~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 71 AQLLSESREQNK-KLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 334455555543 357889999999999999999999998774
No 55
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=47.32 E-value=1.2e+02 Score=25.34 Aligned_cols=11 Identities=36% Similarity=0.422 Sum_probs=7.3
Q ss_pred hhhHHHhhhhc
Q 026143 63 MLKTLERYQKC 73 (243)
Q Consensus 63 m~~ileRY~~~ 73 (243)
+..+|++|...
T Consensus 93 ~~~~l~~y~~l 103 (189)
T PF10211_consen 93 YRMTLDAYQTL 103 (189)
T ss_pred HHHHHHHHHHH
Confidence 66677777654
No 56
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=45.68 E-value=1.3e+02 Score=23.17 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 144 QYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 144 qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..+.+++..||.....|.|+|..|+..-..
T Consensus 18 ~~l~~el~~LK~~~~el~EEN~~L~iEN~~ 47 (110)
T PRK13169 18 GVLLKELGALKKQLAELLEENTALRLENDK 47 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346799999999999999999999876443
No 57
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=45.61 E-value=1.4e+02 Score=26.65 Aligned_cols=50 Identities=24% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
=-|.++|+.|+.++.++----.+| ++-+.|-.-.+.|.++-+.|+..|.-
T Consensus 133 ~sleDfeqrLnqAIErnAfLESEL--dEke~llesvqRLkdEardlrqelav 182 (333)
T KOG1853|consen 133 YSLEDFEQRLNQAIERNAFLESEL--DEKEVLLESVQRLKDEARDLRQELAV 182 (333)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888887764222221 22223333445667777777777654
No 58
>smart00030 CLb CLUSTERIN Beta chain.
Probab=45.02 E-value=56 Score=27.85 Aligned_cols=72 Identities=25% Similarity=0.416 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHH---------HhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHh--hhcCC
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTKT---------QYMLDQLSDLQN-KEQLLLDTNRALTIKLDEINAK--TQLRP 182 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~---------qlm~e~i~~Lk~-ke~~L~eeN~~L~~kl~~~~~~--~~~~~ 182 (243)
+|..||..-=..+.++++.||.-|..-|+ +-|+..+++-++ ||..|...| ....+|.+...- ..+..
T Consensus 8 ~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~~kk~KeeAlk~~~-e~e~kL~E~~~vCnetm~a 86 (206)
T smart00030 8 ELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEEAKKKKEEALKDTR-ESEEKLKESQGVCNETMMA 86 (206)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44455666666778888888888765543 234444544444 333443333 445566654321 12333
Q ss_pred CccCC
Q 026143 183 SWEGG 187 (243)
Q Consensus 183 ~~~~~ 187 (243)
.|+.+
T Consensus 87 lWeEC 91 (206)
T smart00030 87 LWEEC 91 (206)
T ss_pred HHHHh
Confidence 57654
No 59
>PF10623 PilI: Plasmid conjugative transfer protein PilI; InterPro: IPR018897 The thin pilus of plasmid R64 belongs to the type IV family and is required for liquid matings. PilI is one of 14 genes that have been identified as being involved in biogenesis of the R64 thin pilus [].
Probab=44.34 E-value=22 Score=25.65 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=25.3
Q ss_pred ceeeeEeeCCC--CceeeecccchhhHHHhhhhc
Q 026143 42 EVALIIFSNRG--KLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 42 eValIifS~~G--kl~e~~s~~sm~~ileRY~~~ 73 (243)
.+-++|+|++| ||+.++.+.....++.+|...
T Consensus 8 rl~VLVv~n~c~~kL~~~~~~~D~~~i~r~f~Tp 41 (83)
T PF10623_consen 8 RLQVLVVSNHCERKLFDTKPDNDPDKIARRFCTP 41 (83)
T ss_pred eEEEEEEeCCcceeEeecCCCCCHHHHHhhccCc
Confidence 46788999887 678777666799999999763
No 60
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=44.01 E-value=51 Score=31.45 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTK---------TQYMLDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK---------~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
+|..||..--..+..+++.||.-|..-| .+-++..++..+++-+.....-+....+|++.+
T Consensus 2 ~Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeAl~l~~e~e~kLee~e 71 (436)
T PF01093_consen 2 NLKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEALKLANEVEEKLEEEE 71 (436)
T ss_pred chHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455565555667777777777665333 334455555554443333333335566666643
No 61
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=43.66 E-value=1.8e+02 Score=23.76 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+.....+|..+...|+++|+.|..++..
T Consensus 87 ~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 87 WRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455567777888888888888776644
No 62
>smart00340 HALZ homeobox associated leucin zipper.
Probab=43.10 E-value=56 Score=20.78 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 151 SDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 151 ~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
+.|++=-..|.++|+.|++++.+..
T Consensus 8 e~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 8 ELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777789999999999998854
No 63
>PF14968 CCDC84: Coiled coil protein 84
Probab=43.07 E-value=1.8e+02 Score=26.84 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=19.5
Q ss_pred hcccCcceeeeEee--CCCCceeeecccchhhHHHhhhh
Q 026143 36 SVLCDAEVALIIFS--NRGKLYEFCSSSSMLKTLERYQK 72 (243)
Q Consensus 36 SvLCdaeValIifS--~~Gkl~e~~s~~sm~~ileRY~~ 72 (243)
|+-||+||.-.+-+ -.|-+++++|+. =.+=+.+|-.
T Consensus 61 C~fC~~ev~~~~s~~~~~~ai~HLaS~e-H~k~vk~F~w 98 (336)
T PF14968_consen 61 CVFCDCEVREHDSSFACGGAIEHLASPE-HRKNVKKFWW 98 (336)
T ss_pred eeCccchhhhccchhhhccHHhhcCCHH-HHHHHHHHHH
Confidence 67778777644332 345566677665 3333344433
No 64
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=42.92 E-value=1.7e+02 Score=23.52 Aligned_cols=46 Identities=26% Similarity=0.291 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTI 169 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~ 169 (243)
.|.+.||..-...+.+|+.++.+| .++...+.--+.|.+-|+.+..
T Consensus 1 q~~~~Le~ek~~~~~rI~~K~~~L--qEL~~Q~va~knLv~RN~~~~~ 46 (142)
T PF08781_consen 1 QECEELEEEKQRRRERIKKKKEQL--QELILQQVAFKNLVQRNRQLEQ 46 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhh
Confidence 367888999889999998888765 3333333334567777766543
No 65
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.60 E-value=1.2e+02 Score=21.41 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 142 K~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
|.+-..+.|..|+.+...|.++|..|...-.+
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~ 43 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEE 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44556788888888888888888888765444
No 66
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=41.82 E-value=87 Score=23.45 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 116 LGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 116 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
..+++++++. ++.-......+++.|..+-..+..+|..|...+.+.
T Consensus 61 ~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 61 RHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred CCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777653 444444556788899999999999999999988764
No 67
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.64 E-value=2.1e+02 Score=23.84 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 151 SDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 151 ~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..+..|-+.|+++|..|-....+
T Consensus 161 ~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 161 NMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888887665443
No 68
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=41.40 E-value=13 Score=34.85 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=50.6
Q ss_pred eeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 8 LKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 8 ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
|+++-++..-..||.+|+.| ||+++||+.+-+.||....-...|+++.-+.+.-.-|+..
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q~~ 77 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQKF 77 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHhhh
Confidence 77888888888999999999 9999999999999998877777788776677777766665
No 69
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.24 E-value=70 Score=22.01 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+..++..|+++...+..+|..|..++...
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888888888888888887764
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.24 E-value=3.8e+02 Score=26.49 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=13.9
Q ss_pred hHHHhhcccCcceeeeEee-CCC------Cceeeeccc
Q 026143 31 KAYELSVLCDAEVALIIFS-NRG------KLYEFCSSS 61 (243)
Q Consensus 31 KA~ELSvLCdaeValIifS-~~G------kl~e~~s~~ 61 (243)
+|+.|--- |.+-=..+|. ..| .+|.|..++
T Consensus 78 ~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~~ 114 (546)
T PF07888_consen 78 QAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAPK 114 (546)
T ss_pred CcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCCC
Confidence 46666543 2333444443 344 355566443
No 71
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=40.08 E-value=55 Score=31.40 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 151 SDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 151 ~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
.+|++|+..|..+|..|-.+|...
T Consensus 289 qeL~kkV~~Le~~N~sLl~qL~kl 312 (472)
T KOG0709|consen 289 QELQKKVEELELSNRSLLAQLKKL 312 (472)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHH
Confidence 467778888888888887777654
No 72
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=39.88 E-value=20 Score=26.94 Aligned_cols=29 Identities=34% Similarity=0.306 Sum_probs=21.5
Q ss_pred hHHHhhcccCcceeeeEeeCCCCceeeecc
Q 026143 31 KAYELSVLCDAEVALIIFSNRGKLYEFCSS 60 (243)
Q Consensus 31 KA~ELSvLCdaeValIifS~~Gkl~e~~s~ 60 (243)
|-.||--+-+| +|.=.|||+|||.+|-++
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykgd 32 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKGD 32 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeCC
Confidence 45566655555 455689999999999875
No 73
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=39.14 E-value=63 Score=26.72 Aligned_cols=43 Identities=28% Similarity=0.419 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 026143 124 LEQLERQLESSLKHVRSTKTQYMLDQL---SDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 124 L~~LE~qLe~sL~~IR~rK~qlm~e~i---~~Lk~ke~~L~eeN~~L~~kl 171 (243)
|.++|..|..++.+- =+|.++| +.|+...+.|.+|-+.|+.++
T Consensus 2 LeD~EsklN~AIERn-----alLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERN-----ALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788887777653 2333333 344444445555555554444
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.03 E-value=91 Score=23.57 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+..++..++++...|..+|..|+.++..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~ 59 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDD 59 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666654
No 75
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=38.44 E-value=3.5e+02 Score=25.91 Aligned_cols=26 Identities=12% Similarity=0.396 Sum_probs=20.4
Q ss_pred eeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 44 ALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 44 alIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
-+++|.++|++-.| + +..||+.|-.+
T Consensus 302 Nm~~~~~~g~p~~~---~-l~~iL~~f~~~ 327 (445)
T cd00187 302 NMVAFDPNGRPKKL---N-LKEILQEFLDH 327 (445)
T ss_pred eEEEEecCCeeEEe---C-HHHHHHHHHHH
Confidence 67778889998888 2 88888888664
No 76
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.22 E-value=2.3e+02 Score=23.36 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 116 LGPLNSKELEQLERQLESSLKHVRSTK--TQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 116 L~~Ls~~EL~~LE~qLe~sL~~IR~rK--~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
.+.|++++....-+.|.........-+ ++-+.+++..|+.+...|..+|..|.+++...
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999888888876533332211 23456778888888888888888887776543
No 77
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=38.22 E-value=32 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.9
Q ss_pred CcceeeeEeeCCCCceeeecccchhhHHHhhhhcc
Q 026143 40 DAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCS 74 (243)
Q Consensus 40 daeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~ 74 (243)
+..++-||+ ++|++-+|..+-.+.+|+..|=.+.
T Consensus 14 ~~~~vkvv~-~~G~v~~~~~pv~a~evm~~~P~h~ 47 (181)
T PF14009_consen 14 SAATVKVVH-PDGKVEEFKRPVTAAEVMLENPGHF 47 (181)
T ss_pred CCceEEEEc-CCCcEEEeCCCcCHHHHHHHCCCCE
Confidence 455555665 7899999988778999999997763
No 78
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.90 E-value=1.6e+02 Score=21.40 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 147 LDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 147 ~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
...|+.|+++.+.+.+.-..+...+.
T Consensus 75 ~~~i~~l~~~~~~l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 75 EKEIKKLEKQLKYLEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 79
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=37.21 E-value=1.3e+02 Score=26.71 Aligned_cols=51 Identities=31% Similarity=0.375 Sum_probs=34.3
Q ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLER-QLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 121 ~~EL~~LE~-qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..|+..||+ .+.....--+.|| ..++.|..|++|++.|.-.|..|...+..
T Consensus 201 ~qe~~kleRkrlrnreaa~Kcr~--rkLdrisrLEdkv~~lk~~n~~L~~~l~~ 252 (279)
T KOG0837|consen 201 DQEKIKLERKRLRNREAASKCRK--RKLDRISRLEDKVKTLKIYNRDLASELSK 252 (279)
T ss_pred hHHHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Confidence 356666665 3443333334444 34599999999999999999888776654
No 80
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=37.15 E-value=2.7e+02 Score=27.82 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=45.2
Q ss_pred HHHHhHHHHHHHhhhhhhhccCCCCCCCH-HHHHHHHHHHHHHhH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026143 93 EYLKLKTRFESLQRTQRNLLGEDLGPLNS-KELEQLERQLESSLK----HVRSTKTQYMLDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 93 E~~kLk~kie~Lq~~~r~l~GedL~~Ls~-~EL~~LE~qLe~sL~----~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L 167 (243)
|..+|+.+++.+....-++-+-+..-..+ +.|..++..++...+ -+-....+-..+....|+..+..+.++|..|
T Consensus 122 e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~l 201 (629)
T KOG0963|consen 122 ENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEEL 201 (629)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556655555544443333322222222 345556666666555 3344444455566677777777777777777
Q ss_pred HHHHHHH
Q 026143 168 TIKLDEI 174 (243)
Q Consensus 168 ~~kl~~~ 174 (243)
.+++...
T Consensus 202 e~ki~~l 208 (629)
T KOG0963|consen 202 EKKISSL 208 (629)
T ss_pred HHHHHHH
Confidence 7776654
No 81
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.94 E-value=88 Score=33.01 Aligned_cols=49 Identities=16% Similarity=0.233 Sum_probs=38.0
Q ss_pred HHHHHhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 026143 130 QLESSLKHVRSTKTQY-MLDQLSDLQNKEQLLLDTNRALTIKLDEINAKT 178 (243)
Q Consensus 130 qLe~sL~~IR~rK~ql-m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~~~ 178 (243)
.|+.-|.+.|+|-... +..+|-.+++|-..+..++...+.++++...++
T Consensus 282 MLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn 331 (1195)
T KOG4643|consen 282 MLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN 331 (1195)
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4777777888776543 567888899999999999999999988865444
No 82
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=36.81 E-value=14 Score=32.99 Aligned_cols=37 Identities=27% Similarity=0.582 Sum_probs=26.3
Q ss_pred hhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhh
Q 026143 19 VTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLK 65 (243)
Q Consensus 19 vTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ 65 (243)
+||.+| +||+ +=-+..++++.+ .||.|.|+|...+.+
T Consensus 210 ~tl~~~-~GLL-------lPG~p~~Gv~~~--~~k~y~F~s~~aa~~ 246 (281)
T PF12018_consen 210 WTLAER-DGLL-------LPGNPSIGVLKY--KDKYYAFSSREAAYR 246 (281)
T ss_pred EEEecc-Ccee-------ecCCCccceeEE--cCEEEEeCCHHHHHH
Confidence 456665 4775 445678888887 789999998774443
No 83
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.87 E-value=48 Score=29.82 Aligned_cols=102 Identities=12% Similarity=0.256 Sum_probs=56.3
Q ss_pred ceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCccccCCCchh
Q 026143 7 ELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKE 86 (243)
Q Consensus 7 ~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~~~~~~~~e 86 (243)
.+..|.|.+.|..+=|+ +||..|.+ +.| .|=+++.|++|++.|.+-.-. .
T Consensus 25 n~~li~n~tqr~t~~sR-------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~eaik--k------- 74 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKSR-------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNEEAIK--K------- 74 (295)
T ss_pred ceecccCccccccccce-------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhHHHhh--h-------
Confidence 45678888888776332 47888875 333 466677899999998762110 0
Q ss_pred hHhHHHHHHHhHHHHHHHhhhhhhhc-cCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 026143 87 LESSYREYLKLKTRFESLQRTQRNLL-GEDLGPLNSKELEQLERQLESSLKHVRSTKTQYM 146 (243)
Q Consensus 87 ~~~~~~E~~kLk~kie~Lq~~~r~l~-GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm 146 (243)
.|.-.+.+..+++.++.-. .+.. |-|-+.. ..||++|-..+..+---+..+|
T Consensus 75 yqqT~~~f~e~~e~~~k~~---~K~k~~~d~e~~-----~klEKel~e~~~~~fg~e~~im 127 (295)
T TIGR01478 75 YQETHDPYEQLQELVEKNR---TKSTGGNGAEPM-----STIEKELLEKYEEMFGDESHIM 127 (295)
T ss_pred hhhhcchHHHHHHHHHhcC---CcccccCCcchh-----hHHHHHHHHHHHHHhCCccchh
Confidence 0112223444444444321 1111 2222222 6777777777777765555544
No 84
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=35.87 E-value=25 Score=27.02 Aligned_cols=26 Identities=38% Similarity=0.359 Sum_probs=20.4
Q ss_pred HHhhcccCcceeeeEeeCCCCceeeec
Q 026143 33 YELSVLCDAEVALIIFSNRGKLYEFCS 59 (243)
Q Consensus 33 ~ELSvLCdaeValIifS~~Gkl~e~~s 59 (243)
.+|-.|-+| +|...||++|++.+|-.
T Consensus 4 ~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 4 DKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 466667776 55689999999999876
No 85
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=34.84 E-value=2.3e+02 Score=22.45 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
.+.|++.+-.-.|..+++..+.-. .-..+|..|+++-..+...|+.|.++|
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~-~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELR-AKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 467888887777777776554322 224778899999999999999887653
No 86
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=34.84 E-value=28 Score=23.92 Aligned_cols=31 Identities=13% Similarity=0.393 Sum_probs=22.8
Q ss_pred cCcceeeeEeeCCCCceeeecccchhhHHHhh
Q 026143 39 CDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 39 CdaeValIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
|+..-.++|. |.|..|...++..+..||+.+
T Consensus 47 C~~~P~v~i~-~~~~~y~~v~~~~~~~il~~~ 77 (77)
T cd02980 47 CGLAPVVVVY-PDGVWYGRVTPEDVEEIVEEL 77 (77)
T ss_pred ccCCCEEEEe-CCCeEEccCCHHHHHHHHHhC
Confidence 6665565555 778888888877788888764
No 87
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=34.68 E-value=13 Score=36.26 Aligned_cols=57 Identities=25% Similarity=0.401 Sum_probs=0.0
Q ss_pred hhHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 026143 86 ELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYML 147 (243)
Q Consensus 86 e~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~ 147 (243)
+.++|..|+......+.. . +....+.|.+|- .+|.+||+++......|..-|.++|.
T Consensus 471 El~~W~~e~~~~~~~l~~---e-~~~t~~~~~pl~-~~L~ele~~I~~~~~~i~~~ka~Il~ 527 (539)
T PF10243_consen 471 ELEMWRSEYRQHAEALQE---E-QSITDEALEPLK-AQLAELEQQIKDQQDKICAVKANILK 527 (539)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH---H-HhhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346888888776654433 2 223445566664 47999999999999999999888875
No 88
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=34.49 E-value=24 Score=24.86 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=22.9
Q ss_pred ccCcceeeeEeeCCCCceeeecccchhhHHHhh
Q 026143 38 LCDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 38 LCdaeValIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
.|+...+++| .|..|...++..+.+|++.|
T Consensus 51 ~C~~gP~v~v---~g~~y~~vt~~~i~~i~~~~ 80 (80)
T cd03064 51 ACDLAPVMMI---NDDVYGRLTPEKVDAILEAL 80 (80)
T ss_pred cCCCCCEEEE---CCEEECCCCHHHHHHHHHhC
Confidence 3877777777 38888888877788888764
No 89
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=34.42 E-value=1.4e+02 Score=19.74 Aligned_cols=46 Identities=9% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTN 164 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN 164 (243)
++|++|+.++=.-.+..-....... +++.+++.++.++...|..--
T Consensus 14 GfsL~eI~~~l~l~~~~~~~~~~~~-~~l~~~~~~i~~~i~~L~~~~ 59 (65)
T PF09278_consen 14 GFSLEEIRELLELYDQGDPPCADRR-ALLEEKLEEIEEQIAELQALR 59 (65)
T ss_dssp T--HHHHHHHHHHCCSHCHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhccCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3788888877522221222222222 445555555555555444433
No 90
>PRK11637 AmiB activator; Provisional
Probab=34.38 E-value=4e+02 Score=25.01 Aligned_cols=15 Identities=20% Similarity=0.395 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhHHH
Q 026143 124 LEQLERQLESSLKHV 138 (243)
Q Consensus 124 L~~LE~qLe~sL~~I 138 (243)
|..++..|+..-..|
T Consensus 84 i~~~~~~i~~~~~~i 98 (428)
T PRK11637 84 ISQASRKLRETQNTL 98 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344443333333
No 91
>PHA02109 hypothetical protein
Probab=34.16 E-value=86 Score=26.25 Aligned_cols=106 Identities=21% Similarity=0.226 Sum_probs=52.1
Q ss_pred cceeeeEeeCCCC------ce---eeecccch---hhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHHHhhhh
Q 026143 41 AEVALIIFSNRGK------LY---EFCSSSSM---LKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQ 108 (243)
Q Consensus 41 aeValIifS~~Gk------l~---e~~s~~sm---~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~Lq~~~ 108 (243)
|-|.=|+||.+.. |. .|+..... -.||.||++.-..+..........+. -++-.--++|+..+
T Consensus 103 a~V~Ei~~S~~~~~~~iARLL~IEI~s~~~~~~~~L~VL~R~R~~~~~E~k~r~~~~KP~~--v~~~AsTE~ID~~~--- 177 (233)
T PHA02109 103 ATVREIKLSLNDDAVKIARLLGIEIFSTNWAHYHNLAVLTRTRRIETIEKKTRVRPAKPKA--VEIHASTERIDQVE--- 177 (233)
T ss_pred hhhheeEEecCccHHHHHHHhhheeeeccHHhhccchhhhhhhhhhhhhhhcCCCCCCccc--eeccccHHHHHHHH---
Confidence 3456677775331 21 15443321 36888998765443332221110000 01111123444443
Q ss_pred hhhccCCCCCCC--HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 026143 109 RNLLGEDLGPLN--SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDT 163 (243)
Q Consensus 109 r~l~GedL~~Ls--~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~ee 163 (243)
+...|+.|++|+ ++++-.|+-.| ..+.++.+++|-|...+..+
T Consensus 178 ~~~t~~~L~~~~~~L~~I~~L~~ki------------~~LS~E~~Q~~~Ki~N~R~~ 222 (233)
T PHA02109 178 RSHTGENLEGLTDKLKQISELTIKL------------EALSDEACQVKHKILNLRAE 222 (233)
T ss_pred hccchhhhhhhhHHHHhhHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 455788888876 45555555443 34567777777776555443
No 92
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=34.12 E-value=3e+02 Score=26.69 Aligned_cols=52 Identities=27% Similarity=0.353 Sum_probs=34.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVR---STKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR---~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
||+.||.+||+ +|+|.+++++- .-|.|| +.+||.+...|+.--+.|+....+
T Consensus 198 ~i~~lsteelr---~qVD~A~~q~VnP~k~KeQL----V~QLkTQItDLErFInFlQ~e~~e 252 (621)
T KOG3759|consen 198 DIDKLSTEELR---RQVDDALKQLVNPFKEKEQL----VDQLKTQITDLERFINFLQDEVGE 252 (621)
T ss_pred CcccccHHHHH---HHHHHHHHHHhChHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhc
Confidence 58888888765 58999999874 234443 345666666666666666665544
No 93
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=33.67 E-value=9.9 Score=29.26 Aligned_cols=27 Identities=26% Similarity=0.533 Sum_probs=22.7
Q ss_pred cHHHhHHHhhcccCcceeeeEeeCCCC
Q 026143 27 GLLKKAYELSVLCDAEVALIIFSNRGK 53 (243)
Q Consensus 27 GL~KKA~ELSvLCdaeValIifS~~Gk 53 (243)
|=+-|+.|+.+=||.|.-||+..+.|.
T Consensus 69 G~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 69 GHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred CceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 445568899999999999999999664
No 94
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=33.33 E-value=2.1e+02 Score=21.44 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|++|+..+=......-..+..+ ..++.+++..+..+...|...-..|..++
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTIPER-LELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred CCCHHHHHHHHHHHccCCccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888887654332211112121 24555666666666666655555555444
No 95
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.96 E-value=25 Score=30.35 Aligned_cols=19 Identities=32% Similarity=0.688 Sum_probs=15.5
Q ss_pred cceeeeEeeCCCCcee--eec
Q 026143 41 AEVALIIFSNRGKLYE--FCS 59 (243)
Q Consensus 41 aeValIifS~~Gkl~e--~~s 59 (243)
-|-||-||||+|.|+. |+-
T Consensus 4 ydraltvFSPDGhL~QVEYAq 24 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQ 24 (249)
T ss_pred cccceEEECCCCCEEeeHhHH
Confidence 3678999999999986 653
No 96
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=32.88 E-value=3e+02 Score=23.47 Aligned_cols=71 Identities=21% Similarity=0.306 Sum_probs=0.0
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDT 163 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~ee 163 (243)
..+..++.+++.+++.+.. .|+..-.. ...+|..||......+.++-.-..-. |..+|..++++...+.+.
T Consensus 146 ~~le~~l~~~k~~ie~vN~-~RK~~Q~~----~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~ 218 (221)
T PF05700_consen 146 KRLEKELAKLKKEIEEVNR-ERKRRQEE----AGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKEN 218 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 97
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.60 E-value=2e+02 Score=23.71 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=12.9
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhh
Q 026143 88 ESSYREYLKLKTRFESLQRTQRN 110 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~ 110 (243)
+.+..+..+|+.+++.|+.....
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~ 129 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEK 129 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666655443
No 98
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=32.41 E-value=17 Score=24.96 Aligned_cols=31 Identities=35% Similarity=0.583 Sum_probs=22.7
Q ss_pred hhhhhcHHHhHHHhhcccC-cceeeeEeeCCCCc
Q 026143 22 AKRRNGLLKKAYELSVLCD-AEVALIIFSNRGKL 54 (243)
Q Consensus 22 sKRr~GL~KKA~ELSvLCd-aeValIifS~~Gkl 54 (243)
..||.|.+-+ |.||-+| .+=.+.|+|..|++
T Consensus 23 ~~RR~g~i~~--~vsi~~~~~~~ei~I~tD~GR~ 54 (63)
T PF04566_consen 23 NLRRSGKISK--EVSIVYDIREKEIRINTDAGRL 54 (63)
T ss_dssp HHHHTTSS-T--TSEEEEETTTTEEEEE-SSCEE
T ss_pred HHhhccCCcc--eeEEEEeccCCEEEEEccCCcc
Confidence 4688887666 8888887 47778888888875
No 99
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=32.15 E-value=2.2e+02 Score=28.69 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQY---MLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~ql---m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+.|..|+++-+.-+...+.+++++ ..++++.||.-.+.|++|.+.|.-++...
T Consensus 4 dkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~ 59 (654)
T PF09798_consen 4 DKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSL 59 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777777777777777654 45888899999999999999997766543
No 100
>PHA03155 hypothetical protein; Provisional
Probab=31.69 E-value=72 Score=24.71 Aligned_cols=22 Identities=36% Similarity=0.400 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
+++|.++...|+-||+.|++++
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 101
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=31.39 E-value=3.3e+02 Score=25.29 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=42.0
Q ss_pred chhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHH
Q 026143 62 SMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRST 141 (243)
Q Consensus 62 sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~r 141 (243)
.++.+.+||......-.... .-....+|.++-++...|+.... .++++.+++.+|+.+-.-+...
T Consensus 8 kl~~~~~r~~el~~~L~~p~-----v~~d~~~~~~lske~a~l~~iv~----------~~~~~~~~~~~l~~a~~~l~~~ 72 (363)
T COG0216 8 KLESLLERYEELEALLSDPE-----VISDPDEYRKLSKEYAELEPIVE----------KYREYKKAQEDLEDAKEMLAEE 72 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcc-----cccCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcc
Confidence 47889999987643211111 11122334444444333332221 2234444444444433333322
Q ss_pred HH----HhHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KT----QYMLDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 142 K~----qlm~e~i~~Lk~ke~~L~eeN~~L 167 (243)
++ .+..++|..++.+...|.++-+.|
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L~~l 102 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEELKIL 102 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 344566666666666666655544
No 102
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=31.32 E-value=5.8 Score=26.36 Aligned_cols=29 Identities=34% Similarity=0.544 Sum_probs=21.8
Q ss_pred eeeeEeeCCCCceeeecccchhhHHHhhhhcc
Q 026143 43 VALIIFSNRGKLYEFCSSSSMLKTLERYQKCS 74 (243)
Q Consensus 43 ValIifS~~Gkl~e~~s~~sm~~ileRY~~~~ 74 (243)
||||||.| +||++++. ++-+.+..|++..
T Consensus 12 valllfGp-~kLP~~~r--~lG~~ir~fk~~~ 40 (53)
T PF02416_consen 12 VALLLFGP-KKLPELAR--SLGKAIREFKKAI 40 (53)
T ss_dssp HHHHHS-T-TTHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHhCc-hHHHHHHH--HHHHHHHHHHHHH
Confidence 78899999 78998874 3778888887754
No 103
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=30.72 E-value=1.6e+02 Score=22.27 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|++|+..+=...+..-...-..-..++.+++..+.++.+.|+..-+.|...+
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLARLDAFE 109 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377777777655443321011111123455555555555555555555554443
No 104
>PHA01750 hypothetical protein
Probab=30.59 E-value=1.9e+02 Score=20.21 Aligned_cols=10 Identities=20% Similarity=0.428 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 026143 147 LDQLSDLQNK 156 (243)
Q Consensus 147 ~e~i~~Lk~k 156 (243)
.+++.++++|
T Consensus 62 ~~qv~eik~k 71 (75)
T PHA01750 62 SRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHh
Confidence 4444444444
No 105
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=30.54 E-value=63 Score=21.19 Aligned_cols=15 Identities=33% Similarity=0.118 Sum_probs=9.1
Q ss_pred CCCCCCHHHHHHHHH
Q 026143 115 DLGPLNSKELEQLER 129 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~ 129 (243)
-|..+|++||++.-.
T Consensus 4 fLk~ls~~eL~~rl~ 18 (49)
T PF11629_consen 4 FLKFLSYEELQQRLA 18 (49)
T ss_dssp GGGGS-HHHHHHHHH
T ss_pred HHhhCCHHHHHHHHH
Confidence 356788888876433
No 106
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=30.51 E-value=27 Score=30.07 Aligned_cols=17 Identities=35% Similarity=0.694 Sum_probs=14.2
Q ss_pred CcceeeeEeeCCCCcee
Q 026143 40 DAEVALIIFSNRGKLYE 56 (243)
Q Consensus 40 daeValIifS~~Gkl~e 56 (243)
+-|--+.||||.|+||.
T Consensus 8 gfDrhitIFspeGrLyQ 24 (246)
T KOG0182|consen 8 GFDRHITIFSPEGRLYQ 24 (246)
T ss_pred CccceEEEECCCceEEe
Confidence 44666899999999997
No 107
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=29.89 E-value=5.2e+02 Score=25.05 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=25.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 144 QYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 144 qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
++|..+..+++.|.+.|.++|..|+.+++.
T Consensus 93 q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 93 DVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456677788889999999999999999854
No 108
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=29.72 E-value=3.9e+02 Score=23.45 Aligned_cols=52 Identities=15% Similarity=0.334 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
+.+++..|+..++.+-.++++--.++ +++.+..|+++...|.+....+...+
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888887777777666544433 33444444444444444444443333
No 109
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=29.60 E-value=7.3e+02 Score=26.66 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=9.4
Q ss_pred eeeEeeCCCCceeeecc
Q 026143 44 ALIIFSNRGKLYEFCSS 60 (243)
Q Consensus 44 alIifS~~Gkl~e~~s~ 60 (243)
+.-+|.++|..--|..+
T Consensus 621 ~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 621 VTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred ceeeeccCccccccCCC
Confidence 34457777755445444
No 110
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.46 E-value=4.3e+02 Score=23.92 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 026143 122 KELEQLERQLESSLKHVRS 140 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~ 140 (243)
++|..||+.-+.....++.
T Consensus 64 ~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 64 QELEELEKEREELDQELEE 82 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555544444443
No 111
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=29.39 E-value=28 Score=22.01 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=17.7
Q ss_pred cCcce---eeeEeeCCCCceeeecccchh
Q 026143 39 CDAEV---ALIIFSNRGKLYEFCSSSSML 64 (243)
Q Consensus 39 CdaeV---alIifS~~Gkl~e~~s~~sm~ 64 (243)
|+..| +-.-..=+|+.|-|+|..+..
T Consensus 6 cg~~v~~~~~~~~~y~G~~Y~FCS~~C~~ 34 (47)
T PF04945_consen 6 CGMKVPGNAAYSVEYNGRTYYFCSEGCKE 34 (47)
T ss_dssp GG-BE-----EEEEETTEEEEESSHHHHH
T ss_pred CCCEEccCccEEEEECCEEEEEcCHHHHH
Confidence 67777 556666799999999986443
No 112
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=29.38 E-value=10 Score=26.34 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=27.9
Q ss_pred HhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccC
Q 026143 34 ELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYG 76 (243)
Q Consensus 34 ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~ 76 (243)
||-|++= ||||||.|. ||++... ++-+.+-.|++....
T Consensus 8 ElliI~v--IalllfGp~-kLP~l~r--~lGk~ir~fkk~~~~ 45 (64)
T PRK14860 8 ELIVILV--IALVVFGPA-KLPQLGQ--ALGGAIRNFKKASNE 45 (64)
T ss_pred HHHHHHH--HHHhhcCch-HHHHHHH--HHHHHHHHHHHHccc
Confidence 5555542 899999986 9998864 388888888886544
No 113
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.64 E-value=1.7e+02 Score=20.48 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+..++..++++...++++|..|+.++..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888999999999999888765
No 114
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=28.41 E-value=2.3e+02 Score=20.35 Aligned_cols=43 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCH----HHHHHHHHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNS----KELEQLERQLES 133 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~----~EL~~LE~qLe~ 133 (243)
..+......||.++...+...+.+-| -+.|+ .++.+||+++..
T Consensus 24 kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 24 KDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHH
Confidence 56667777888888877766666555 22344 344445554443
No 115
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=28.37 E-value=71 Score=28.50 Aligned_cols=36 Identities=31% Similarity=0.438 Sum_probs=28.1
Q ss_pred HhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHH
Q 026143 104 LQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVR 139 (243)
Q Consensus 104 Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR 139 (243)
+++..+++--|.|.+|+++||.+|-.+|-..+..|-
T Consensus 204 ~~~r~~~~SrEeL~~Mt~~EL~qL~~~L~~qIq~vf 239 (285)
T PF06937_consen 204 LQRRHPHYSREELNSMTLDELKQLNEKLLQQIQDVF 239 (285)
T ss_pred ccccccccCHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 455566777899999999999999888876665553
No 116
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=27.85 E-value=70 Score=18.81 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=15.4
Q ss_pred cceeeeEeeCCCCceeeeccc
Q 026143 41 AEVALIIFSNRGKLYEFCSSS 61 (243)
Q Consensus 41 aeValIifS~~Gkl~e~~s~~ 61 (243)
..-.-..|||+||-..|+|..
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEEC
T ss_pred ccccCEEEecCCCEEEEEecC
Confidence 345567899999999898753
No 117
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=27.83 E-value=5.7e+02 Score=24.79 Aligned_cols=45 Identities=13% Similarity=0.300 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 125 EQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 125 ~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..+.++++.++...|.. +.++...|+.....++..-..|..+|..
T Consensus 97 ~~id~~i~~av~~~~~~----~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 97 QSIDQQIQQAVQSETQE----LTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred hhHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44666666666665533 4556677777766777777777777754
No 118
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.64 E-value=52 Score=28.89 Aligned_cols=39 Identities=28% Similarity=0.622 Sum_probs=29.1
Q ss_pred hhhhhhcHHHhHHHhhcccCcc---eeeeEeeCCCCceeeecc
Q 026143 21 FAKRRNGLLKKAYELSVLCDAE---VALIIFSNRGKLYEFCSS 60 (243)
Q Consensus 21 fsKRr~GL~KKA~ELSvLCdae---ValIifS~~Gkl~e~~s~ 60 (243)
|.+-+.|++||.. +..||..+ |+-|.||+.++..-||.+
T Consensus 120 ~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSkD 161 (269)
T PRK09822 120 YRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCKD 161 (269)
T ss_pred hhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeeec
Confidence 4445788888864 66777654 555679999999999875
No 119
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=27.63 E-value=9.4 Score=27.38 Aligned_cols=36 Identities=25% Similarity=0.487 Sum_probs=26.5
Q ss_pred chhhhhhhhcHHH---------hHHHhhcccCcceeeeEeeCCCC
Q 026143 18 QVTFAKRRNGLLK---------KAYELSVLCDAEVALIIFSNRGK 53 (243)
Q Consensus 18 qvTfsKRr~GL~K---------KA~ELSvLCdaeValIifS~~Gk 53 (243)
-+-||+-|++|-. ++.|+.+-||.|.-|+..-|.|.
T Consensus 19 ~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 19 ATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp -EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred EEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 3345777777644 56789999999999999999887
No 120
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=27.02 E-value=1.5e+02 Score=17.71 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRSTKTQYMLDQLSDLQN 155 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ 155 (243)
.|..|+..++.+...-+=-+.-.+.++|..|++
T Consensus 3 ~i~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~~ 35 (36)
T PF02151_consen 3 LIKELEEKMEEAVENEDFEKAARLRDQIKALKK 35 (36)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHc
Confidence 456677777777766665555556666666654
No 121
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=26.78 E-value=2.7e+02 Score=23.62 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=7.0
Q ss_pred HHHHHHHhHHHHHHH
Q 026143 128 ERQLESSLKHVRSTK 142 (243)
Q Consensus 128 E~qLe~sL~~IR~rK 142 (243)
..+|..-|..||.-|
T Consensus 47 NrrlQ~hl~EIR~LK 61 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLK 61 (195)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444455555444
No 122
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.59 E-value=7e+02 Score=26.08 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=46.6
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhcc--CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLLG--EDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNR 165 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~G--edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~ 165 (243)
..+..++.+|=.+.+.+-+..-.--+ +....++.+++.+|......--.-||. +.-+++.++++++.|.-+|.
T Consensus 614 ~~lD~~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~-----lD~~~e~lkQ~~~~l~~e~e 688 (970)
T KOG0946|consen 614 LALDFEFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRE-----LDYQIENLKQMEKELQVENE 688 (970)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHH
Confidence 35667777777666655333221111 234445666666666555543333333 33566777777777777777
Q ss_pred HHHHHHHH
Q 026143 166 ALTIKLDE 173 (243)
Q Consensus 166 ~L~~kl~~ 173 (243)
.|..++..
T Consensus 689 eL~~~vq~ 696 (970)
T KOG0946|consen 689 ELEEEVQD 696 (970)
T ss_pred HHHHHHHH
Confidence 77777655
No 123
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.43 E-value=7.9e+02 Score=26.87 Aligned_cols=53 Identities=15% Similarity=0.176 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHHhHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVR-------STKTQYMLDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR-------~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
.++++|+.--..++..+..++ ..+. -+.++|..|+.++..+.+....+...+.
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e-~~~~eI~~Lq~ki~el~~~klkl~~~l~ 881 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQ-DQQEQIQHLKSKTNELKSEKLQIGTNLQ 881 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477776665555555555553 2222 2346666776666666665555555444
No 124
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=26.08 E-value=1.3e+02 Score=23.10 Aligned_cols=29 Identities=24% Similarity=0.455 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+..++..||+....|.|+|..|+-..+..
T Consensus 20 l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 20 LLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 35789999999999999999998765543
No 125
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=25.99 E-value=1.6e+02 Score=18.96 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNR 165 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~ 165 (243)
+-++|.+|++|-+.|..++-
T Consensus 24 id~qIaeLe~KR~~Lv~qHP 43 (46)
T PF08946_consen 24 IDEQIAELEAKRQRLVDQHP 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 45788888888777776654
No 126
>PF11291 DUF3091: Protein of unknown function (DUF3091); InterPro: IPR021442 This eukaryotic family of proteins has no known function.
Probab=25.70 E-value=3e+02 Score=20.83 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=39.7
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLK 136 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~ 136 (243)
+.+..-..+|+.-.+.+|....++....-+..+.+|+..|+..+-.-..
T Consensus 21 E~l~~~~~~Lkq~f~~~qS~~~~mTC~~PeNI~~~D~~~L~~~I~~~q~ 69 (100)
T PF11291_consen 21 EKLNRCSVKLKQYFDKLQSKKENMTCNRPENISEKDLNNLENSIQNYQS 69 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCcccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4566667788888899999888888888889999999999988654433
No 127
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.44 E-value=2.9e+02 Score=20.55 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|+.|+..+=...+. ..-..++..++..+.++...|+..-..|...+
T Consensus 58 G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 58 GFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred CCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788888877554332 23334555666666666666655555554443
No 128
>PF11232 Med25: Mediator complex subunit 25 PTOV activation and synapsin 2; InterPro: IPR021394 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-active part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain, an SD1 - synapsin 1 - domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This family is the combined PTOV and SD2 domains. the PTOV domain being the domain through which Med25 co-operates with the histone acetyltransferase CBP, but the function of the SD2 domain is unclear []. ; PDB: 2KY6_A 2L23_A 2XNF_A 2L6U_A.
Probab=25.32 E-value=81 Score=25.71 Aligned_cols=35 Identities=14% Similarity=0.429 Sum_probs=23.7
Q ss_pred cccCcceeeeEeeCCCCcee-eeccc------chhhHHHhhh
Q 026143 37 VLCDAEVALIIFSNRGKLYE-FCSSS------SMLKTLERYQ 71 (243)
Q Consensus 37 vLCdaeValIifS~~Gkl~e-~~s~~------sm~~ileRY~ 71 (243)
.-|++.|-+++||++-+.|- |.-.+ .+.+|++.++
T Consensus 109 p~c~iKvL~LlYs~kk~~flG~IP~DQ~~Fv~~lr~Vi~~~k 150 (152)
T PF11232_consen 109 PPCEIKVLMLLYSPKKKAFLGFIPNDQEGFVNRLRQVIQIQK 150 (152)
T ss_dssp SSSS-SEEEEEEETTTTEEEEEEESTHHHHHHHHHHHCHHHC
T ss_pred CCCceEEEEEEEcCCCceEEEEcCCCHHHHHHHHHHHHHHhh
Confidence 56999999999999998776 65432 2555555543
No 129
>PRK03918 chromosome segregation protein; Provisional
Probab=25.11 E-value=3e+02 Score=28.16 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=19.5
Q ss_pred ccCccee-eeEeeCCCCceeeeccc-chhhHHHhh
Q 026143 38 LCDAEVA-LIIFSNRGKLYEFCSSS-SMLKTLERY 70 (243)
Q Consensus 38 LCdaeVa-lIifS~~Gkl~e~~s~~-sm~~ileRY 70 (243)
++|.++. -+||-+-|.+..|..++ .-.++|++-
T Consensus 120 ~~~~~~f~~~~~~~Qg~~~~~~~~~~~r~~~~~~~ 154 (880)
T PRK03918 120 LIPYHVFLNAIYIRQGEIDAILESDESREKVVRQI 154 (880)
T ss_pred hcCHHHhceeEEEeccchHHHhcCcHHHHHHHHHH
Confidence 4555542 34667789998886533 445555443
No 130
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=25.08 E-value=2.5e+02 Score=19.74 Aligned_cols=48 Identities=25% Similarity=0.351 Sum_probs=27.9
Q ss_pred HHHHHHHHHhHHHH---HHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 026143 126 QLERQLESSLKHVR---STKTQYMLDQLSDLQNK-------EQLLLDTNRALTIKLDE 173 (243)
Q Consensus 126 ~LE~qLe~sL~~IR---~rK~qlm~e~i~~Lk~k-------e~~L~eeN~~L~~kl~~ 173 (243)
.||.+|-.+|..+- .+.-+-..+...+|+.. +..|.+.+..|..++..
T Consensus 3 eLE~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~ 60 (70)
T PF04899_consen 3 ELEKQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQR 60 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777664 34444555666666554 34555555555555544
No 131
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=24.98 E-value=41 Score=26.93 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.5
Q ss_pred hhcccCcceeeeEeeCCCCceeee
Q 026143 35 LSVLCDAEVALIIFSNRGKLYEFC 58 (243)
Q Consensus 35 LSvLCdaeValIifS~~Gkl~e~~ 58 (243)
+.++|||||-++|-|.+.+-.-||
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred HHHhhccceeeeeecccCccccCC
Confidence 577899999999999888755554
No 132
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=24.65 E-value=44 Score=31.24 Aligned_cols=43 Identities=28% Similarity=0.423 Sum_probs=27.3
Q ss_pred HHhhcccCcceeeeEeeCCCCceeeecc----cchhhHHHhhhhccc
Q 026143 33 YELSVLCDAEVALIIFSNRGKLYEFCSS----SSMLKTLERYQKCSY 75 (243)
Q Consensus 33 ~ELSvLCdaeValIifS~~Gkl~e~~s~----~sm~~ileRY~~~~~ 75 (243)
+-|||+||-+|---+.-.+..=|-|+.| ++++.++..|+..|-
T Consensus 367 yalSV~~~~~V~HClIy~tatG~GFa~pyn~y~tlk~lV~hY~h~SL 413 (464)
T KOG4637|consen 367 YALSVVHDGEVKHCLIYQTATGFGFAEPYNLYSTLKELVLHYQHTSL 413 (464)
T ss_pred eEEEEEECCceeeeEEeeccccccccchhHHHHHHHHHHHHHhhhhH
Confidence 5689999998854444333333444433 258888888887653
No 133
>smart00338 BRLZ basic region leucin zipper.
Probab=24.43 E-value=2.1e+02 Score=19.20 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
+..+...|+.+...|..++..|...+
T Consensus 38 L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666667777777665543
No 134
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.79 E-value=8.1e+02 Score=25.21 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQYMLDQLSDL 153 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~L 153 (243)
.|+..+.+.|+..+..++.+|.+++.+--.+.
T Consensus 539 ~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea 570 (771)
T TIGR01069 539 KEQEKLKKELEQEMEELKERERNKKLELEKEA 570 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666654433333
No 135
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=23.65 E-value=6.5e+02 Score=24.07 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=29.8
Q ss_pred hhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 23 KRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 23 KRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
.--++|+|+- .|.+- .-+-+++|+++|++..|. ++..||+.|-.+
T Consensus 282 ~~~~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~~---~~~~Il~~f~~~ 326 (439)
T PHA02592 282 ATHEKIMKDF-GLIER--VSQNITVINENGKLKVYE---NAEDLIRDFVEI 326 (439)
T ss_pred HHHHHHHHhc-Cchhe--eeeeEEEEecCCeeeecC---CHHHHHHHHHHH
Confidence 3445676553 33221 237788999999998884 388888888554
No 136
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=23.58 E-value=2.3e+02 Score=20.53 Aligned_cols=29 Identities=17% Similarity=0.349 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+..++..+++....|.++|..|+-+...
T Consensus 39 ~~~~~l~~l~~~~~~l~~e~~~L~lE~~~ 67 (97)
T PF04999_consen 39 QLFYELQQLEKEIDQLQEENERLRLEIAT 67 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566999999999999999999877654
No 137
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=23.41 E-value=3.5e+02 Score=20.92 Aligned_cols=55 Identities=7% Similarity=0.175 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
++|++|+..+-...+..-.... .-.+++.+++..+.++...|...-..|..++..
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~ 111 (133)
T cd04787 57 GFSLKDIKEILSHADQGESPCP-MVRRLIEQRLAETERRIKELLKLRDRMQQAVSQ 111 (133)
T ss_pred CCCHHHHHHHHhhhccCCCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888877544332211111 112456677777777777776666666555433
No 138
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.27 E-value=5.9e+02 Score=23.46 Aligned_cols=43 Identities=30% Similarity=0.498 Sum_probs=24.6
Q ss_pred HHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 026143 92 REYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRS 140 (243)
Q Consensus 92 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~ 140 (243)
.|...|.++...||...+.+.. .++|+..+...--.++++=|.
T Consensus 4 eEW~eL~~efq~Lqethr~Y~q------Kleel~~lQ~~C~ssI~~Qkk 46 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQ------KLEELSKLQDKCSSSISHQKK 46 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777776666553 455666665555555554433
No 139
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=23.25 E-value=27 Score=32.37 Aligned_cols=39 Identities=33% Similarity=0.422 Sum_probs=0.0
Q ss_pred hhcHHHhHHHhhcccCcceee-eEeeCCCCceeeecccchh
Q 026143 25 RNGLLKKAYELSVLCDAEVAL-IIFSNRGKLYEFCSSSSML 64 (243)
Q Consensus 25 r~GL~KKA~ELSvLCdaeVal-IifS~~Gkl~e~~s~~sm~ 64 (243)
-.|+||=..=..-||+|.-+| -|.|.+||+-+|+|++ +.
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~s-lr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPS-LR 92 (354)
T ss_dssp -----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCc-cc
Confidence 357777777788999999999 8889999999999987 54
No 140
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.04 E-value=7.2e+02 Score=25.56 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHH-HHHHHHHH-----------HHHH
Q 026143 92 REYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYML-DQLSDLQN-----------KEQL 159 (243)
Q Consensus 92 ~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~-e~i~~Lk~-----------ke~~ 159 (243)
.+|.+++..++.|+...+.+-. +++++.. .-|.++.|++=-.|-.+-|. .++.+|+. +|.+
T Consensus 537 ~~~~~sr~~~~~le~~~~a~qa------t~d~a~~-Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~ 609 (961)
T KOG4673|consen 537 DYYSNSRALAAALEAQALAEQA------TNDEARS-DLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDM 609 (961)
T ss_pred HhhhhHHHHHHHHHHHHHHHHH------hhhhhhh-hHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q 026143 160 LLDTNRALTIKLDEIN 175 (243)
Q Consensus 160 L~eeN~~L~~kl~~~~ 175 (243)
+.++|..|...+++.+
T Consensus 610 ~R~Ei~~LqrRlqaaE 625 (961)
T KOG4673|consen 610 FRGEIEDLQRRLQAAE 625 (961)
T ss_pred HHHHHHHHHHHHHHHH
No 141
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.95 E-value=4e+02 Score=21.33 Aligned_cols=43 Identities=30% Similarity=0.256 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 132 ESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 132 e~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
+.-|..+|+-|..+ ...+...+.+...|..-|..+...|...+
T Consensus 72 ~~EL~~l~sEk~~L-~k~lq~~q~kv~eLE~~~~~~~~~l~~~E 114 (140)
T PF10473_consen 72 ELELDTLRSEKENL-DKELQKKQEKVSELESLNSSLENLLQEKE 114 (140)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33445566666544 45667777777777777777777766543
No 142
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=22.68 E-value=5e+02 Score=22.39 Aligned_cols=16 Identities=38% Similarity=0.621 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026143 158 QLLLDTNRALTIKLDE 173 (243)
Q Consensus 158 ~~L~eeN~~L~~kl~~ 173 (243)
..|.+.|..|+.+|+.
T Consensus 238 ~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 238 EFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4677788888877765
No 143
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=44 Score=29.01 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=19.3
Q ss_pred hcccCcceeeeEeeCCCCcee--eec
Q 026143 36 SVLCDAEVALIIFSNRGKLYE--FCS 59 (243)
Q Consensus 36 SvLCdaeValIifS~~Gkl~e--~~s 59 (243)
||=.+-|.|.-+|||+|++|. |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 455677889999999999987 654
No 144
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=22.37 E-value=1.3e+02 Score=20.07 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=20.0
Q ss_pred eeEeeCCCCceeeecccchhhHHHhh
Q 026143 45 LIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 45 lIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
+.||-|.|+..+|+..+++..+...-
T Consensus 1 I~v~lpdG~~~~~~~g~T~~d~A~~I 26 (60)
T PF02824_consen 1 IRVYLPDGSIKELPEGSTVLDVAYSI 26 (60)
T ss_dssp EEEEETTSCEEEEETTBBHHHHHHHH
T ss_pred CEEECCCCCeeeCCCCCCHHHHHHHH
Confidence 35777999999999887777666543
No 145
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=22.22 E-value=4.7e+02 Score=21.85 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRSTKTQYMLDQLSDL 153 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~L 153 (243)
++..|+..|+.-.+.=-.++.+|..+-|..|
T Consensus 139 ~i~slk~EL~d~iKe~e~~emeLyyecMkkL 169 (181)
T PF04645_consen 139 EIESLKSELNDLIKEREIREMELYYECMKKL 169 (181)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555544444445544444433
No 146
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=22.22 E-value=7.7e+02 Score=24.36 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=26.5
Q ss_pred hHHHHHHHh--HHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHH
Q 026143 89 SSYREYLKL--KTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRS 140 (243)
Q Consensus 89 ~~~~E~~kL--k~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~ 140 (243)
.|...+..| +.+++.++.....+...++. ++.++.+..+.++.-.+.++.
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik--~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKKDIK--NPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 566556666 55566666555556555444 344555555555544444433
No 147
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=22.07 E-value=1.2e+02 Score=25.95 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=37.2
Q ss_pred hhcHHHhH----HHhhcccCcceeeeEeeCC---CCceeeecccchhhHHHhhhhc
Q 026143 25 RNGLLKKA----YELSVLCDAEVALIIFSNR---GKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 25 r~GL~KKA----~ELSvLCdaeValIifS~~---Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
++-|+.|- .|+++=+|-++.|++.+|+ +..-.|++.. ++.|+..|+..
T Consensus 34 ~~rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~p-L~~vv~~~~~~ 88 (214)
T PF10491_consen 34 QTRLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAP-LENVVRNLKPV 88 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchh-HHHHHHHHHHH
Confidence 45566664 6889999999999999874 3444488776 99999999774
No 148
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=22.02 E-value=38 Score=24.61 Aligned_cols=24 Identities=33% Similarity=0.600 Sum_probs=20.0
Q ss_pred HHhhcccCcceeeeEeeCCCCcee
Q 026143 33 YELSVLCDAEVALIIFSNRGKLYE 56 (243)
Q Consensus 33 ~ELSvLCdaeValIifS~~Gkl~e 56 (243)
.-++|-||.+=|+|-||.+|.||-
T Consensus 17 tS~~Vs~~~~gs~ValS~dg~l~G 40 (81)
T PF03785_consen 17 TSISVSCDVPGSYVALSQDGDLYG 40 (81)
T ss_dssp SEEEEEESSTT-EEEEEETTEEEE
T ss_pred cEEEEEecCCCcEEEEecCCEEEE
Confidence 346899999999999999999885
No 149
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.01 E-value=3.5e+02 Score=20.39 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
+|++|+..+=...+.+-... ....+++.+++..+.++...|...-..|...
T Consensus 58 ~sl~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (123)
T cd04770 58 FSLAEIRELLSLRDDGAAPC-AEVRALLEEKLAEVEAKIAELQALRAELAGL 108 (123)
T ss_pred CCHHHHHHHHHhhhcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887755443211001 1112445566666666666655555555443
No 150
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=21.97 E-value=2.5e+02 Score=22.29 Aligned_cols=54 Identities=7% Similarity=-0.035 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|++|+..+-..+...-...-..-..++.+++..+.++...|...-..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388888888765543211111111123455556666666666655555554443
No 151
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=21.95 E-value=1.5e+02 Score=20.65 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHh
Q 026143 121 SKELEQLERQLESSLKHVRSTKTQY 145 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~rK~ql 145 (243)
-.|+..+|+.|......+..||.++
T Consensus 47 ~~~i~~~~~~l~~t~~~l~~Kk~~l 71 (72)
T PF12537_consen 47 ESDINNAERRLWHTRDMLVEKKKRL 71 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999998888754
No 152
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.93 E-value=4.6e+02 Score=21.67 Aligned_cols=52 Identities=19% Similarity=0.281 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+.+|......|..+|..+... +-...+|..|++....|.+.-+.+.+.|.+.
T Consensus 4 ~~~L~~~d~~L~~~L~~l~~h--q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~ 55 (188)
T PF10018_consen 4 AEDLIEADDELSSALEELQEH--QENQARIQQLRAEIEELDEQIRDILKQLKEA 55 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457778888888888877544 3456666677666666666666666666553
No 153
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=21.92 E-value=91 Score=25.97 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 026143 122 KELEQLERQLESSLKHVRS 140 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~ 140 (243)
.||+.||.||+..+..||.
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4778888888888888774
No 154
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=21.90 E-value=3.5e+02 Score=20.28 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 144 QYMLDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 144 qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
|+..++-.-|+++.-.+.++|..|..+|....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk 42 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYK 42 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788888899999999999988887754
No 155
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=21.81 E-value=6.2e+02 Score=23.09 Aligned_cols=53 Identities=30% Similarity=0.368 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHHHHHH------HHHhHH-------------------------------HHHHHHHHHHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRST------KTQYML-------------------------------DQLSDLQNKEQLLLDTN 164 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~r------K~qlm~-------------------------------e~i~~Lk~ke~~L~eeN 164 (243)
+....||.+|..++..|..- |+.|+. -+++.|++|.+.|.++|
T Consensus 97 ~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN 176 (306)
T PF04849_consen 97 ERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEEN 176 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 66777888888888877643 333321 12578999999999999
Q ss_pred HHHHHHHHHH
Q 026143 165 RALTIKLDEI 174 (243)
Q Consensus 165 ~~L~~kl~~~ 174 (243)
..|+.+....
T Consensus 177 ~~LR~Ea~~L 186 (306)
T PF04849_consen 177 EQLRSEASQL 186 (306)
T ss_pred HHHHHHHHHh
Confidence 9999886653
No 156
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.77 E-value=3.7e+02 Score=20.47 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
.++..++.+.+.+.+++..|+.++.
T Consensus 80 ~~~~~l~~~~~~~~~~~~~l~~~~~ 104 (118)
T PF13815_consen 80 SQLEQLEERLQELQQEIEKLKQKLK 104 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 157
>PTZ00370 STEVOR; Provisional
Probab=21.57 E-value=1.1e+02 Score=27.50 Aligned_cols=27 Identities=4% Similarity=0.305 Sum_probs=19.5
Q ss_pred cccCcceeeeEeeCCCCceeeecccchhhHHHhhhh
Q 026143 37 VLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK 72 (243)
Q Consensus 37 vLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~ 72 (243)
+||..|. ++| .|=+++.|++|++.|.+
T Consensus 42 ~L~Ecel----~~p-----~YdNDpemK~i~d~~n~ 68 (296)
T PTZ00370 42 LLAQTQN----HNP-----HYHNDPELKEIIDKMNE 68 (296)
T ss_pred ehhhhhc----CCC-----CCCCcHHHHHHHHHHhH
Confidence 4787775 444 36666689999999876
No 158
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=21.46 E-value=3.3e+02 Score=19.88 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLE 132 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe 132 (243)
+++++++..+-...+
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 588888888766553
No 159
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.45 E-value=9.3e+02 Score=25.03 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=37.1
Q ss_pred HhHHHHHHHhHHHHHHHhhhhhhhc------c---CCCCCCCHHHHH-HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHH
Q 026143 88 ESSYREYLKLKTRFESLQRTQRNLL------G---EDLGPLNSKELE-QLERQLESSLKHVRSTKTQYMLDQLSDLQNKE 157 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~~r~l~------G---edL~~Ls~~EL~-~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke 157 (243)
+-++.|...|+.++..|....|.-. | -+++=+|+.-|. .|+.||..+++..- ++...-++|-+-.
T Consensus 390 QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e-----~lq~kneellk~~ 464 (861)
T PF15254_consen 390 QPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQE-----LLQSKNEELLKVI 464 (861)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHH-----HHHHhHHHHHHHH
Confidence 4455555556655555543333211 1 133333333333 35666666655442 3333334444444
Q ss_pred HHHHHHHHHHHHHHH
Q 026143 158 QLLLDTNRALTIKLD 172 (243)
Q Consensus 158 ~~L~eeN~~L~~kl~ 172 (243)
..+.+||+.|.+.+.
T Consensus 465 e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 465 ENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555555544
No 160
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=21.35 E-value=5.5e+02 Score=22.37 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026143 158 QLLLDTNRALTIKLD 172 (243)
Q Consensus 158 ~~L~eeN~~L~~kl~ 172 (243)
+.+...+..+...+.
T Consensus 124 ~~l~~~~~k~~~~l~ 138 (256)
T PF14932_consen 124 KELSAECSKLNNELN 138 (256)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 161
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.32 E-value=3.3e+02 Score=19.71 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=25.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 142 K~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
|-|-..+.|.-||-....|.+.|..|......
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555788999998889999999999887654
No 162
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=21.29 E-value=51 Score=27.98 Aligned_cols=29 Identities=31% Similarity=0.507 Sum_probs=20.2
Q ss_pred ccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 38 LCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 38 LCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
--+|++||+|||++.+- |.+-+++=|.+.
T Consensus 90 yrgaqa~vLVFSTTDr~-------SFea~~~w~~kv 118 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRY-------SFEATLEWYNKV 118 (246)
T ss_pred hccccceEEEEecccHH-------HHHHHHHHHHHH
Confidence 35899999999998762 255555556553
No 163
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=21.07 E-value=5.6e+02 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhHH
Q 026143 122 KELEQLERQLESSLKHVRSTKTQYML 147 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~qlm~ 147 (243)
++|..=+..|+..|...+.+|.++..
T Consensus 200 k~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 200 EELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666665543
No 164
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=2e+02 Score=26.11 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026143 116 LGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 116 L~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L 167 (243)
-.+||..|-.. |.+||.||.||+ +.|+.|+.......++-..|
T Consensus 8 p~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~eid~~ 50 (395)
T KOG0930|consen 8 PNDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEEIDNL 50 (395)
T ss_pred CCCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 35677766554 457899998874 78888888777666655444
No 165
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=20.93 E-value=14 Score=23.95 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=21.5
Q ss_pred eeeeEeeCCCCceeeecccchhhHHHhhhhcc
Q 026143 43 VALIIFSNRGKLYEFCSSSSMLKTLERYQKCS 74 (243)
Q Consensus 43 ValIifS~~Gkl~e~~s~~sm~~ileRY~~~~ 74 (243)
||+|||.| +|+++... ++-+.+..|++..
T Consensus 13 i~llvfGp-~kLP~~~r--~lG~~i~~fk~~~ 41 (47)
T TIGR01411 13 VILLLFGA-KKLPELGR--DLGKAIKEFKKAL 41 (47)
T ss_pred HHHHhcCc-hHhHHHHH--HHHHHHHHHHHHh
Confidence 78999976 78888764 3777777777654
No 166
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=20.83 E-value=2.6e+02 Score=21.31 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..+++..|+++...|..||..|++.+.-
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788889899999999988876543
No 167
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.70 E-value=6.7e+02 Score=24.70 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026143 147 LDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 147 ~e~i~~Lk~ke~~L~eeN~~L 167 (243)
+.+|-++++|++.+.-++..|
T Consensus 239 lsql~d~qkk~k~~~~Ekeel 259 (596)
T KOG4360|consen 239 LSQLVDLQKKIKYLRHEKEEL 259 (596)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 344555555555544444433
No 168
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=20.46 E-value=4e+02 Score=20.86 Aligned_cols=53 Identities=13% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|++|+.++-...+..=..... ..+++.+++..+..+...|+..-..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~~~~~-~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~ 109 (135)
T PRK10227 57 GFNLEESGELVNLFNDPQRHSAD-VKRRTLEKVAEIERHIEELQSMRDQLLALA 109 (135)
T ss_pred CCCHHHHHHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888875543321111111 123455667777777777766666665544
No 169
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=20.39 E-value=91 Score=24.77 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=22.7
Q ss_pred ccCcceeeeEeeCCCCceeeecccchhhHHHhhh
Q 026143 38 LCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ 71 (243)
Q Consensus 38 LCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~ 71 (243)
.|+.--+++| +|.+|.-.++..+.+||++|+
T Consensus 115 ~C~~aP~v~V---~~~~y~~vt~e~v~~il~~lk 145 (145)
T PF01257_consen 115 ACDQAPVVMV---DGEWYGNVTPEKVDEILEELK 145 (145)
T ss_dssp SGGGSSEEEE---CCCEEESSSCCHHHHHHHHH-
T ss_pred ccCCCCEEEE---CCEEECCCCHHHHHHHHHhcC
Confidence 3664444444 888988888888999999985
No 170
>PF03428 RP-C: Replication protein C N-terminal domain; InterPro: IPR005090 Proteins in this group have homology with the RepC protein of Agrobacterium Ri and Ti plasmids []. They may be involved in plasmid replication and stabilisation functions.
Probab=20.31 E-value=1.3e+02 Score=25.04 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=36.3
Q ss_pred cceeeeEe--eCCCCceeeeccc---------chhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHHHhhhhh
Q 026143 41 AEVALIIF--SNRGKLYEFCSSS---------SMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQR 109 (243)
Q Consensus 41 aeValIif--S~~Gkl~e~~s~~---------sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~Lq~~~r 109 (243)
+|.+||+. ||+||=|-+-+.. +..-++.||....... .....-..+...|+.++..+.+..+
T Consensus 96 veaGLI~rrDS~NgkRy~~R~~~G~I~~A~GfdLsPL~~R~~El~~~a-------~~~~~~~~~~r~lr~~it~~rR~i~ 168 (177)
T PF03428_consen 96 VEAGLIVRRDSPNGKRYARRDRGGRIVEAFGFDLSPLIARAEELAALA-------EAARAERRALRRLRRRITLLRRDIR 168 (177)
T ss_pred HHCCCeeeccCCCCCccCccCCCCCEEeEeCcCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888 7899877643321 2566777776543211 0112333445556666666666555
Q ss_pred hh
Q 026143 110 NL 111 (243)
Q Consensus 110 ~l 111 (243)
++
T Consensus 169 ~l 170 (177)
T PF03428_consen 169 KL 170 (177)
T ss_pred HH
Confidence 44
No 171
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=20.24 E-value=19 Score=27.37 Aligned_cols=53 Identities=21% Similarity=0.436 Sum_probs=36.7
Q ss_pred ccceeee-cCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 5 RVELKRI-ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 5 Kv~ik~I-en~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
+|++|-+ +|.+|=.|+|.||-.|+-+ +=...+|.+=.|+-.- .+++++.|...
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk~-se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYKM-SEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES---HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEcC-CHHHHHHHHhc
Confidence 5778776 7888999999999999832 3335788777766554 67788888764
No 172
>PF15243 ANAPC15: Anaphase-promoting complex subunit 15
Probab=20.17 E-value=1.3e+02 Score=22.47 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHH
Q 026143 122 KELEQLERQLESSLKHVRSTKT 143 (243)
Q Consensus 122 ~EL~~LE~qLe~sL~~IR~rK~ 143 (243)
-||+++|++.+..|..|+.+=+
T Consensus 28 ~EL~~~Eq~~q~Wl~sI~ekd~ 49 (92)
T PF15243_consen 28 TELQQQEQQHQAWLQSIAEKDN 49 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4788999999999988877643
No 173
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.13 E-value=3.2e+02 Score=19.17 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
..|..|+.+...+......|..++..
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~ 58 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEE 58 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555544444
No 174
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.12 E-value=1.1e+03 Score=25.38 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=5.3
Q ss_pred HHHHHhHHHHHHH
Q 026143 92 REYLKLKTRFESL 104 (243)
Q Consensus 92 ~E~~kLk~kie~L 104 (243)
.++.+++.+|..|
T Consensus 481 ~et~el~~~iknl 493 (1195)
T KOG4643|consen 481 AETEELLNQIKNL 493 (1195)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 175
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=20.08 E-value=1e+02 Score=19.72 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=20.6
Q ss_pred eeEeeCCCCceeeecccchhhHHHhh
Q 026143 45 LIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 45 lIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
+.||=++|..++|+.+.++..+++..
T Consensus 1 ~~~~~~~g~~~~~~~~~t~~~~~~~~ 26 (60)
T cd01668 1 IYVFTPKGEIIELPAGATVLDFAYAI 26 (60)
T ss_pred CEEECCCCCEEEcCCCCCHHHHHHHH
Confidence 36888999999999777788877643
Done!