Query 026143
Match_columns 243
No_of_seqs 259 out of 1498
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 1.5E-40 5E-45 238.7 4.6 73 2-75 1-73 (77)
2 3p57_A Myocyte-specific enhanc 100.0 3.6E-40 1.2E-44 242.3 3.6 76 2-78 1-76 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 5.9E-39 2E-43 239.8 2.4 74 1-75 16-89 (100)
4 1hbx_A SRF, serum response fac 100.0 6.7E-38 2.3E-42 231.2 3.0 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 1.2E-37 4.3E-42 234.1 3.8 77 1-78 9-90 (103)
6 2jee_A YIIU; FTSZ, septum, coi 90.9 1.1 3.6E-05 31.7 7.2 46 119-169 3-48 (81)
7 2w6a_A ARF GTPase-activating p 83.9 7.1 0.00024 25.6 8.5 52 117-168 8-61 (63)
8 2v71_A Nuclear distribution pr 78.1 26 0.00089 28.4 12.0 23 150-172 90-112 (189)
9 3nmd_A CGMP dependent protein 77.3 15 0.0005 25.2 7.9 45 124-173 21-65 (72)
10 1j1d_C Troponin I, TNI; THIN f 75.1 26 0.00087 26.8 9.6 49 97-145 31-84 (133)
11 3hnw_A Uncharacterized protein 75.1 26 0.00088 26.9 11.1 70 89-172 65-134 (138)
12 2oqq_A Transcription factor HY 74.1 11 0.00037 23.0 5.4 27 146-172 15-41 (42)
13 2dfs_A Myosin-5A; myosin-V, in 74.0 6.9 0.00024 40.0 7.5 83 89-175 957-1043(1080)
14 1dip_A Delta-sleep-inducing pe 71.7 6 0.0002 27.2 4.4 24 145-168 19-42 (78)
15 2dgc_A Protein (GCN4); basic d 70.3 14 0.00047 24.5 6.0 36 135-174 21-56 (63)
16 3hnw_A Uncharacterized protein 67.7 39 0.0013 25.8 9.2 54 123-176 76-131 (138)
17 1ci6_A Transcription factor AT 65.7 26 0.00088 23.0 6.6 30 148-177 23-52 (63)
18 2yy0_A C-MYC-binding protein; 64.8 13 0.00043 23.8 4.7 27 146-172 24-50 (53)
19 1j1e_C Troponin I, TNI; THIN f 63.8 42 0.0014 27.0 8.6 32 115-146 54-85 (180)
20 3s9g_A Protein hexim1; cyclin 62.2 42 0.0014 24.3 9.6 79 56-170 9-87 (104)
21 1t2k_D Cyclic-AMP-dependent tr 61.7 30 0.001 22.4 6.5 36 137-176 15-50 (61)
22 1a93_B MAX protein, coiled coi 61.4 12 0.00041 21.8 3.7 27 140-166 6-32 (34)
23 1dh3_A Transcription factor CR 60.7 30 0.001 22.1 6.1 33 138-174 16-48 (55)
24 1dip_A Delta-sleep-inducing pe 59.8 37 0.0013 23.2 6.4 29 142-170 6-37 (78)
25 2aze_A Transcription factor DP 59.0 47 0.0016 26.0 7.9 47 120-168 3-49 (155)
26 1ytz_T Troponin T; muscle, THI 56.2 23 0.00079 26.0 5.4 31 115-145 38-68 (107)
27 2wt7_A Proto-oncogene protein 55.7 40 0.0014 22.0 6.6 34 138-175 17-50 (63)
28 3s9g_A Protein hexim1; cyclin 54.5 39 0.0013 24.4 6.2 58 114-172 25-82 (104)
29 1jnm_A Proto-oncogene C-JUN; B 53.4 43 0.0015 21.7 6.6 37 137-177 15-51 (62)
30 2oxj_A Hybrid alpha/beta pepti 52.8 20 0.00069 20.7 3.6 25 149-173 2-26 (34)
31 1j1d_B Troponin T, TNT; THIN f 52.1 22 0.00075 26.1 4.7 31 115-145 38-68 (106)
32 1go4_E MAD1 (mitotic arrest de 50.5 48 0.0016 24.0 6.2 19 155-173 75-93 (100)
33 1gd2_E Transcription factor PA 50.3 55 0.0019 22.0 6.8 43 133-175 18-63 (70)
34 3na7_A HP0958; flagellar bioge 50.0 87 0.003 26.0 8.9 35 120-154 88-124 (256)
35 3oja_B Anopheles plasmodium-re 49.6 1.2E+02 0.0041 27.9 10.7 20 88-107 459-478 (597)
36 2zqm_A Prefoldin beta subunit 47.8 73 0.0025 22.7 7.9 42 132-174 69-110 (117)
37 1fxk_A Prefoldin; archaeal pro 46.2 75 0.0026 22.3 9.1 27 147-173 78-104 (107)
38 3gp4_A Transcriptional regulat 45.0 97 0.0033 23.3 8.1 56 118-174 59-114 (142)
39 1deq_A Fibrinogen (alpha chain 44.8 1.7E+02 0.0059 26.2 10.2 42 26-72 21-63 (390)
40 2l16_A SEC-independent protein 44.5 1.2 4E-05 31.2 -3.1 30 43-75 16-45 (78)
41 3hvz_A Uncharacterized protein 44.0 19 0.00064 24.8 3.1 26 44-69 7-32 (78)
42 1kd8_B GABH BLL, GCN4 acid bas 42.8 35 0.0012 19.9 3.6 23 150-172 3-25 (36)
43 1m2d_A [2Fe-2S] ferredoxin; th 42.6 13 0.00044 26.9 2.2 33 39-72 59-91 (110)
44 1gk7_A Vimentin; intermediate 42.6 52 0.0018 19.5 4.7 27 146-172 11-37 (39)
45 3m48_A General control protein 41.5 28 0.00097 20.0 3.0 24 150-173 2-25 (33)
46 3c3f_A Alpha/beta peptide with 40.9 40 0.0014 19.4 3.6 25 149-173 2-26 (34)
47 3na7_A HP0958; flagellar bioge 38.0 1.7E+02 0.0058 24.2 9.4 19 123-141 105-123 (256)
48 2v66_B Nuclear distribution pr 37.5 1.2E+02 0.0041 22.3 9.7 31 146-176 75-105 (111)
49 1deb_A APC protein, adenomatou 36.1 65 0.0022 20.3 4.3 23 152-174 7-29 (54)
50 2oqq_A Transcription factor HY 35.0 76 0.0026 19.2 4.6 28 150-177 5-32 (42)
51 2xus_A Breast cancer metastasi 34.9 84 0.0029 19.7 5.5 33 121-160 12-44 (49)
52 3nrf_A APAG protein; structura 34.5 3.4 0.00011 30.5 -2.1 44 11-59 21-64 (106)
53 2jee_A YIIU; FTSZ, septum, coi 33.7 1.1E+02 0.0036 21.3 5.6 32 142-173 14-45 (81)
54 3gpv_A Transcriptional regulat 33.6 1.5E+02 0.0052 22.3 7.6 56 118-174 73-128 (148)
55 3m9b_A Proteasome-associated A 33.0 79 0.0027 26.7 5.8 40 123-167 55-94 (251)
56 1g6u_A Domain swapped dimer; d 32.8 81 0.0028 18.9 4.5 23 117-139 15-37 (48)
57 1hjb_A Ccaat/enhancer binding 32.7 1.3E+02 0.0044 21.1 6.8 28 150-177 38-65 (87)
58 1z56_A Ligase interacting fact 31.5 23 0.00079 29.8 2.2 42 9-57 117-158 (246)
59 2bni_A General control protein 31.2 57 0.0019 18.8 3.2 24 150-173 3-26 (34)
60 3c3g_A Alpha/beta peptide with 30.8 78 0.0027 18.1 3.9 24 150-173 2-25 (33)
61 1nkp_B MAX protein, MYC proto- 30.7 1.3E+02 0.0043 20.4 6.1 27 147-173 53-79 (83)
62 2dfs_A Myosin-5A; myosin-V, in 30.4 4.5E+02 0.015 26.7 12.0 29 125-154 1015-1043(1080)
63 3m03_A ORC6, origin recognitio 30.0 28 0.00094 25.1 2.1 68 62-136 21-92 (95)
64 1p9i_A Cortexillin I/GCN4 hybr 29.9 60 0.002 17.7 3.0 18 157-174 8-25 (31)
65 1am9_A Srebp-1A, protein (ster 28.8 1E+02 0.0036 21.0 5.0 27 148-174 50-76 (82)
66 1go4_E MAD1 (mitotic arrest de 28.7 98 0.0034 22.3 4.9 29 148-176 12-40 (100)
67 2rpa_A Katanin P60 ATPase-cont 28.4 6.5 0.00022 27.3 -1.4 56 29-103 16-71 (78)
68 2w6b_A RHO guanine nucleotide 28.3 1.2E+02 0.0041 19.4 5.4 30 146-175 8-37 (56)
69 2ky6_A Mediator of RNA polymer 28.3 56 0.0019 25.8 3.8 37 36-72 116-159 (166)
70 2lw9_A Unconventionnal myosin- 27.1 46 0.0016 20.9 2.5 36 91-127 5-40 (51)
71 1gu4_A CAAT/enhancer binding p 26.4 1.6E+02 0.0054 20.1 6.8 28 150-177 38-65 (78)
72 2l5g_A GPS2 protein, G protein 26.2 86 0.0029 18.5 3.4 20 148-167 15-34 (38)
73 3q4f_C DNA repair protein XRCC 25.9 72 0.0025 25.6 4.1 23 148-170 161-183 (186)
74 2kmm_A Guanosine-3',5'-BIS(dip 25.5 57 0.0019 21.1 3.0 26 45-70 3-28 (73)
75 1kd8_A GABH AIV, GCN4 acid bas 25.1 1E+02 0.0035 17.9 3.6 21 151-171 4-24 (36)
76 1ytz_I Troponin I; muscle, THI 24.8 1.8E+02 0.0062 23.3 6.3 30 115-145 52-81 (182)
77 2lg7_A Uncharacterized protein 24.5 33 0.0011 24.7 1.7 25 36-60 52-78 (129)
78 3twe_A Alpha4H; unknown functi 24.3 85 0.0029 16.6 2.8 13 91-103 7-19 (27)
79 1ci6_A Transcription factor AT 24.2 1.5E+02 0.0051 19.2 5.6 24 148-171 37-60 (63)
80 2hy6_A General control protein 23.8 93 0.0032 17.9 3.2 24 150-173 3-26 (34)
81 2zxx_A Geminin; coiled-coil, c 23.4 1.1E+02 0.0037 21.2 4.1 28 146-173 39-66 (79)
82 4gfh_A DNA topoisomerase 2; to 23.4 3E+02 0.01 28.4 9.1 44 25-73 957-1000(1177)
83 2jo8_A Serine/threonine-protei 23.0 84 0.0029 19.9 3.2 14 116-129 7-20 (51)
84 1t2k_D Cyclic-AMP-dependent tr 22.7 1.6E+02 0.0053 18.8 5.3 26 146-171 34-59 (61)
85 1uo4_A General control protein 22.6 1E+02 0.0035 17.8 3.2 24 150-173 3-26 (34)
86 2l5g_B Putative uncharacterize 22.3 1.4E+02 0.0047 18.1 5.3 17 148-164 23-39 (42)
87 2auv_A Potential NAD-reducing 22.2 36 0.0012 23.2 1.5 29 39-70 57-85 (85)
88 3ghg_A Fibrinogen alpha chain; 21.5 5E+02 0.017 24.3 11.9 11 62-72 50-60 (562)
89 1e52_A Excinuclease ABC subuni 21.2 88 0.003 20.5 3.2 43 114-156 12-58 (63)
90 3h4p_A Proteasome subunit alph 21.1 21 0.00071 30.1 0.1 19 41-59 12-32 (264)
91 1ryp_E 20S proteasome; multica 20.6 20 0.00069 29.5 -0.1 15 44-58 3-19 (242)
92 4fi5_A Nucleoprotein; structur 20.1 2.6E+02 0.009 20.5 7.8 59 115-173 18-87 (113)
93 3nzj_F Proteasome component C1 20.0 22 0.00074 30.5 -0.0 20 37-56 4-23 (288)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=1.5e-40 Score=238.71 Aligned_cols=73 Identities=52% Similarity=0.878 Sum_probs=69.7
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY 75 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~ 75 (243)
||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++ |++||+||+++++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~-~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCC-HHHHHHHHHhccC
Confidence 899999999999999999999999999999999999999999999999999999999876 9999999999764
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=3.6e-40 Score=242.35 Aligned_cols=76 Identities=50% Similarity=0.825 Sum_probs=72.6
Q ss_pred CccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCcc
Q 026143 2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAV 78 (243)
Q Consensus 2 gR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~ 78 (243)
|||||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|++ |+.||+||++++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~-~~~il~rY~~~~~~~~ 76 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD-MDKVLLKYTEYNEPHE 76 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSC-HHHHHHHHHHCCSCCC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCC-HHHHHHHHHhcCcccc
Confidence 899999999999999999999999999999999999999999999999999999999975 9999999999876544
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=5.9e-39 Score=239.81 Aligned_cols=74 Identities=38% Similarity=0.638 Sum_probs=70.8
Q ss_pred CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY 75 (243)
Q Consensus 1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~ 75 (243)
|||+||+|++|||+++|||||+|||+||||||+||||||||+|||||||++||+|+|+|++ |..||+||.....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps-~~~il~r~~G~~l 89 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK-FEPIVTQQEGRNL 89 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTT-TTHHHHSHHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCC-HHHHHHHhhCCcH
Confidence 8999999999999999999999999999999999999999999999999999999999986 9999999976543
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=6.7e-38 Score=231.18 Aligned_cols=70 Identities=36% Similarity=0.658 Sum_probs=68.0
Q ss_pred CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhh
Q 026143 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ 71 (243)
Q Consensus 1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~ 71 (243)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|++ |..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~-~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK-LQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGG-GGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCC-HHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999986 999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=1.2e-37 Score=234.05 Aligned_cols=77 Identities=32% Similarity=0.606 Sum_probs=71.3
Q ss_pred CCccccceeeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHh-----hhhccc
Q 026143 1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLER-----YQKCSY 75 (243)
Q Consensus 1 MgR~Kv~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileR-----Y~~~~~ 75 (243)
|||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|++ |..||++ |.+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~-~~~vi~~~~Gk~l~~~c~ 87 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK-LQPMITSETGKALIQTCL 87 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGG-GGGGTSSHHHHHHHHHTT
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCcc-HHHHHHhhhhhHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999986 9999998 556655
Q ss_pred Ccc
Q 026143 76 GAV 78 (243)
Q Consensus 76 ~~~ 78 (243)
...
T Consensus 88 ~~~ 90 (103)
T 1k6o_B 88 NSP 90 (103)
T ss_dssp CC-
T ss_pred cCC
Confidence 433
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=90.87 E-value=1.1 Score=31.67 Aligned_cols=46 Identities=13% Similarity=0.294 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 119 LNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTI 169 (243)
Q Consensus 119 Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~ 169 (243)
+|++=|.+||..++.++..| .++.-+|++||.|-..|.++|..++.
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68888999999999999988 56777888888887777776666444
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=83.90 E-value=7.1 Score=25.64 Aligned_cols=52 Identities=25% Similarity=0.318 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 117 GPLNSKELEQLERQLESSLKHVRS--TKTQYMLDQLSDLQNKEQLLLDTNRALT 168 (243)
Q Consensus 117 ~~Ls~~EL~~LE~qLe~sL~~IR~--rK~qlm~e~i~~Lk~ke~~L~eeN~~L~ 168 (243)
++.++.|..++-+-|-.+=.+|.. +-+.-+.+++.-++++.+.|+.+|..|+
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 567888888888877777666642 2233456888889999999999999886
No 8
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=78.06 E-value=26 Score=28.41 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
+..|++....|.+.+..|.++|-
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ir 112 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVR 112 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455444455555555555543
No 9
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=77.33 E-value=15 Score=25.16 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 124 LEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 124 L~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+.+|+..|......||.+. +.|.+|.+......++...|+.+|..
T Consensus 21 i~eLq~~L~~K~eELr~kd-----~~I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-----ALIDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999998875 34667766666777777788877765
No 10
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=75.12 E-value=26 Score=26.84 Aligned_cols=49 Identities=24% Similarity=0.322 Sum_probs=34.8
Q ss_pred hHHHHHHHhhhhhhhcc-----CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh
Q 026143 97 LKTRFESLQRTQRNLLG-----EDLGPLNSKELEQLERQLESSLKHVRSTKTQY 145 (243)
Q Consensus 97 Lk~kie~Lq~~~r~l~G-----edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql 145 (243)
|+++.+......+.++. -+|++||.++|+.+=..|-..+..+-+-|..+
T Consensus 31 l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 31 LEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34443433333444443 37999999999999999999999988877655
No 11
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=75.10 E-value=26 Score=26.86 Aligned_cols=70 Identities=20% Similarity=0.240 Sum_probs=37.9
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 89 SSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALT 168 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~ 168 (243)
+...|+.+++.+++.|+.....+ -+|+..|-..|...-.++.. ...++.+|+++...|++++..|.
T Consensus 65 NiadEl~k~~~~~~~L~~~l~~~---------~kE~~~lK~el~~~~~k~e~-----~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 65 NIADDYFKAKKMADSLSLDIENK---------DKEIYDLKHELIAAQIKAES-----SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766544332 34555555544444333332 23444556666666666666665
Q ss_pred HHHH
Q 026143 169 IKLD 172 (243)
Q Consensus 169 ~kl~ 172 (243)
..+.
T Consensus 131 ~~~~ 134 (138)
T 3hnw_A 131 TELN 134 (138)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=74.07 E-value=11 Score=22.96 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
+.....+|..+...|+.||..|++.+.
T Consensus 15 le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 15 LENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 455667788888889999999987653
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=74.03 E-value=6.9 Score=40.02 Aligned_cols=83 Identities=16% Similarity=0.210 Sum_probs=43.7
Q ss_pred hHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCH----HHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 026143 89 SSYREYLKLKTRFESLQRTQRNLLGEDLGPLNS----KELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTN 164 (243)
Q Consensus 89 ~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~----~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN 164 (243)
.+..|+.+|++.++.|+.......- +. -.+ +|+..|++.++...+.-..... ...+..++|+.|...|.++|
T Consensus 957 ~~~~e~~~L~~~l~~le~~~~e~~~--~~-~~v~~L~~e~~~l~~~~~~~~ke~~~lee-~~~~~~~~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A 957 TYSTETEKLRSDVERLRMSEEEAKN--AT-NRVLSLQEEIAKLRKELHQTQTEKKTIEE-WADKYKHETEQLVSELKEQN 1032 (1080)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556677776666666553222110 00 011 2333344444443333222221 12223357888889999999
Q ss_pred HHHHHHHHHHh
Q 026143 165 RALTIKLDEIN 175 (243)
Q Consensus 165 ~~L~~kl~~~~ 175 (243)
..|+.++.+.+
T Consensus 1033 ~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1033 TLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887754
No 14
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.71 E-value=6 Score=27.19 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 145 YMLDQLSDLQNKEQLLLDTNRALT 168 (243)
Q Consensus 145 lm~e~i~~Lk~ke~~L~eeN~~L~ 168 (243)
++.++|.+|..+...|+.||+.|+
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777767777777776664
No 15
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=70.32 E-value=14 Score=24.46 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=27.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 135 LKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 135 L~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
-.+.|.||. +.+.+|..+...|..+|..|..++...
T Consensus 21 ArrsR~RK~----~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 21 ARRSRARKL----QRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555654 677889999999999999999887764
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=67.72 E-value=39 Score=25.84 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 123 ELEQLERQLESSLKHVRSTKTQYML--DQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~rK~qlm~--e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
+...|+.+++.--+.|-+-|.++.. ..++.++++...|.+++..|.+++...+.
T Consensus 76 ~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 76 MADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777777777777777654 45567777778888888888888776543
No 17
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=65.68 E-value=26 Score=23.03 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
+.+..|..+...|..+|..|..++.....+
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E 52 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888999999998888765443
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=64.77 E-value=13 Score=23.83 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
+..++.+|+.|...|.+++..|+.++.
T Consensus 24 Lk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 24 LRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888899999988888775
No 19
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=63.84 E-value=42 Score=26.98 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTKTQYM 146 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm 146 (243)
+|++||.++|+.+=.+|-..+..+-+-|..+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 78999999999999999999999888877653
No 20
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=62.15 E-value=42 Score=24.27 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=46.6
Q ss_pred eeecccchhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHh
Q 026143 56 EFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSL 135 (243)
Q Consensus 56 e~~s~~sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL 135 (243)
+|-+.. ...+.|+|.--+ -.+++. +.+.+||..|..+++.++...+.+- .+...
T Consensus 9 eFl~Kd-FSe~YE~~h~Er----L~~mSK---qELIqEYl~LE~~~s~le~e~~rlr-------------~~~~~----- 62 (104)
T 3s9g_A 9 EFLQRD-FSETYERYHTES----LQNMSK---QELIKEYLELEKSLSRMEDENNRLR-------------LESKR----- 62 (104)
T ss_dssp -----C-CHHHHHHHHHHH----HHTSCH---HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH-----
T ss_pred HHHHHH-HHHHHHHHHHHH----HHhccH---HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcc-----
Confidence 466655 777778876532 112222 5678888888888888876655331 11111
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 136 KHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 136 ~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
...+|.+|..+...|..+|..|...
T Consensus 63 ----------~~~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 63 ----------LDARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1356667777788888888888654
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.69 E-value=30 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 137 HVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 137 ~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
+-|.||. +.+.+|..+...|..+|..|..++.....
T Consensus 15 k~R~rKk----~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 15 RSRQKRK----VWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456654 56778888999999999999988876543
No 22
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=61.40 E-value=12 Score=21.77 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=18.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 026143 140 STKTQYMLDQLSDLQNKEQLLLDTNRA 166 (243)
Q Consensus 140 ~rK~qlm~e~i~~Lk~ke~~L~eeN~~ 166 (243)
.||++-....|++|+++-..|.++-+.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 367777778888888776666665443
No 23
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=60.69 E-value=30 Score=22.10 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=25.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 138 VRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 138 IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
-|.||. .-+.+|..+...|..+|..|..++...
T Consensus 16 SR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 16 SRRKKK----EYVKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 556788889999999999999988764
No 24
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=59.82 E-value=37 Score=23.24 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHhHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KTQYML---DQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 142 K~qlm~---e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
|++||+ ++++-||.+.+.|.+.|..|..+
T Consensus 6 KtHLm~AVREEVevLKe~I~EL~e~~~qLE~E 37 (78)
T 1dip_A 6 KNHLMYAVREEVEILKEQIRELVEKNSQLERE 37 (78)
T ss_dssp TTGGGGTCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555654 78899999999999999999765
No 25
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=59.01 E-value=47 Score=26.00 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALT 168 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~ 168 (243)
|+.|...||..-...+.+|+.++.+| .++...+.--+.|.+-|+.+.
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L--qeL~~Q~vafknLv~RN~~~e 49 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL--QELILQQIAFKNLVQRNRHAE 49 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998887655 333333333456777776654
No 26
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=56.21 E-value=23 Score=26.04 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTKTQY 145 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql 145 (243)
+|++||.++|+.+=.+|...+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999999998888877654
No 27
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=55.70 E-value=40 Score=21.99 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=26.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 138 VRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 138 IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
-|.||. +.+.+|..+...|..+|..|..++....
T Consensus 17 cR~rKk----~~~~~Le~~v~~L~~~n~~L~~ei~~L~ 50 (63)
T 2wt7_A 17 CRNRRR----ELTDTLQAETDQLEDEKSALQTEIANLL 50 (63)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 6678899999999999999999887643
No 28
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=54.53 E-value=39 Score=24.43 Aligned_cols=58 Identities=21% Similarity=0.168 Sum_probs=31.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 114 EDLGPLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 114 edL~~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
|.|.+||-.||.+==-+|+..+.++-..-+.+-.. -...-.+.+.|..+-..|+..-.
T Consensus 25 ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~-~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 25 ESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLE-SKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHH
Confidence 34556788888764445555555542222222111 22334577777777777765533
No 29
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=53.41 E-value=43 Score=21.69 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=28.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 137 HVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 137 ~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
+-|.||. +.+.+|..+...|..+|..|..++.....+
T Consensus 15 k~R~rKk----~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 15 KSRKRKL----ERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 667899999999999999999998875443
No 30
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=52.81 E-value=20 Score=20.70 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 149 QLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 149 ~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+++|..|+..|..+|..|..++..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3566777888888888888777654
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=52.07 E-value=22 Score=26.13 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTKTQY 145 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql 145 (243)
+|++||.++|+.+=.+|-..+..+-+-|..+
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999999999988887655
No 32
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=50.48 E-value=48 Score=24.03 Aligned_cols=19 Identities=16% Similarity=0.025 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026143 155 NKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 155 ~ke~~L~eeN~~L~~kl~~ 173 (243)
+....|+.++..|+.++..
T Consensus 75 ~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666655543
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.27 E-value=55 Score=22.03 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=24.7
Q ss_pred HHhHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 133 SSLKHVRSTKTQYM---LDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 133 ~sL~~IR~rK~qlm---~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
.|=...|.||.+-+ ..++.+|...-..|..+|..|+..+....
T Consensus 18 ~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 18 AAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677776432 24455555555556677777776666543
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=50.02 E-value=87 Score=26.01 Aligned_cols=35 Identities=9% Similarity=0.217 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHHh--HHHHHHHHH
Q 026143 120 NSKELEQLERQLESSLKHVRSTKTQY--MLDQLSDLQ 154 (243)
Q Consensus 120 s~~EL~~LE~qLe~sL~~IR~rK~ql--m~e~i~~Lk 154 (243)
+.+|+..|...++..-.+|...-.++ +++.++.++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~ 124 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS 124 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888877766665544433 234444333
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.64 E-value=1.2e+02 Score=27.89 Aligned_cols=20 Identities=10% Similarity=-0.011 Sum_probs=11.5
Q ss_pred HhHHHHHHHhHHHHHHHhhh
Q 026143 88 ESSYREYLKLKTRFESLQRT 107 (243)
Q Consensus 88 ~~~~~E~~kLk~kie~Lq~~ 107 (243)
..+..++.++++++...++.
T Consensus 459 ~~~~~~i~~l~~~~~~~~~~ 478 (597)
T 3oja_B 459 NELRAEVQQLTNEQIQQEQL 478 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777776665554433
No 36
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.84 E-value=73 Score=22.74 Aligned_cols=42 Identities=14% Similarity=0.264 Sum_probs=27.8
Q ss_pred HHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 132 ESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 132 e~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+.++..+..++..+ ...|+.|.++...+..+-..|+..+.+.
T Consensus 69 ~ea~~~L~~~~e~i-e~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 69 DKAVAELKEKIETL-EVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455554433 6777888888888888888887777664
No 37
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=46.16 E-value=75 Score=22.34 Aligned_cols=27 Identities=7% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 147 LDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 147 ~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
...|+.|.++...+..+-..|+..|.+
T Consensus 78 ~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 78 QLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777776666665543
No 38
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=45.00 E-value=97 Score=23.33 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
++|++|+..+-...+.+-..+..+ .+++.+++..+.++...|+..-..|..++...
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~~-~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 114 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEAR-AELLKKQRIELKNRIDVMQEALDRLDFKIDNY 114 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888766554332222222 24566777777777777777777777776653
No 39
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=44.83 E-value=1.7e+02 Score=26.17 Aligned_cols=42 Identities=7% Similarity=-0.019 Sum_probs=22.7
Q ss_pred hcHHHhHHHhhcccCcceeeeEeeCCCCcee-eecccchhhHHHhhhh
Q 026143 26 NGLLKKAYELSVLCDAEVALIIFSNRGKLYE-FCSSSSMLKTLERYQK 72 (243)
Q Consensus 26 ~GL~KKA~ELSvLCdaeValIifS~~Gkl~e-~~s~~sm~~ileRY~~ 72 (243)
.-++.+|+.-|---||..|+ ...+=. .||.-.|+.+|++..+
T Consensus 21 pR~vE~~~s~Ck~~d~~~C~-----DeDwG~kCPsGCrLqg~Ldk~er 63 (390)
T 1deq_A 21 PRLVERQQSACKETGWPFCS-----DEDWNTKCPSGCRMKGLIDEVDQ 63 (390)
T ss_pred CchhhhhccccCCCCCCCCc-----hhhccCCCCccchHHHHHHHhhh
Confidence 33444555555555666665 222222 3343358888887764
No 40
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=44.55 E-value=1.2 Score=31.20 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=23.9
Q ss_pred eeeeEeeCCCCceeeecccchhhHHHhhhhccc
Q 026143 43 VALIIFSNRGKLYEFCSSSSMLKTLERYQKCSY 75 (243)
Q Consensus 43 ValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~ 75 (243)
||||||.| +||++.+. ++-+.+..|++...
T Consensus 16 VaLlvfGp-kkLP~l~r--~lGk~ir~fK~~~~ 45 (78)
T 2l16_A 16 IALIIFGP-SKLPEIGR--AAGRTLLEFKSATK 45 (78)
T ss_dssp HHHHHSCT-TTHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHhheeCc-cHhHHHHH--HHHHHHHHHHHHHH
Confidence 88999998 69999874 37888888887654
No 41
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=44.02 E-value=19 Score=24.79 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=21.3
Q ss_pred eeeEeeCCCCceeeecccchhhHHHh
Q 026143 44 ALIIFSNRGKLYEFCSSSSMLKTLER 69 (243)
Q Consensus 44 alIifS~~Gkl~e~~s~~sm~~ileR 69 (243)
-+.||.|+|.+++++..+++..+...
T Consensus 7 ~i~v~tP~G~~~~lp~GaT~~D~A~~ 32 (78)
T 3hvz_A 7 EVFVFTPKGDVISLPIGSTVIDFAYA 32 (78)
T ss_dssp EEEEECTTSCEEEEETTCBHHHHHHH
T ss_pred eEEEECCCCCEEEecCCCCHHHHHHH
Confidence 36899999999999988877776643
No 42
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=42.76 E-value=35 Score=19.94 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
+++|..|+..|..+|..|..++.
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~ 25 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVA 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555555555555555443
No 43
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=42.58 E-value=13 Score=26.95 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=24.7
Q ss_pred cCcceeeeEeeCCCCceeeecccchhhHHHhhhh
Q 026143 39 CDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQK 72 (243)
Q Consensus 39 CdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~ 72 (243)
|+..-.++|+ |+|.+|..-++..+..||+.|..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 5555555555 88988887788789999998753
No 44
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=42.56 E-value=52 Score=19.52 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLD 172 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~ 172 (243)
+-+.+...-.|++.|..+|+.|..++.
T Consensus 11 LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 11 LNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556788899999999987764
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=41.50 E-value=28 Score=19.98 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+.+|..|+..|..+|..|..++..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~R 25 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVAR 25 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHH
Confidence 345667777888888888777655
No 46
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=40.94 E-value=40 Score=19.42 Aligned_cols=25 Identities=8% Similarity=0.101 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 149 QLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 149 ~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+++|..|...|..+|..|..++..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3456666777777777777766554
No 47
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=38.00 E-value=1.7e+02 Score=24.15 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRST 141 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~r 141 (243)
+...||..+...+..|-..
T Consensus 105 ~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 105 RSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 48
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=37.46 E-value=1.2e+02 Score=22.27 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
...++.++..|-....|.|..|...|.+...
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~EKe~ 105 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDEKES 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999987643
No 49
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.14 E-value=65 Score=20.31 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 152 DLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 152 ~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+|-+++..|.-||..|++++.++
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dN 29 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDN 29 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhh
Confidence 34455566677788888877764
No 50
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=35.04 E-value=76 Score=19.20 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
+.+|..+.+.|+..|..|..++.-...+
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566777778888888877776554433
No 51
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.94 E-value=84 Score=19.70 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 026143 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLL 160 (243)
Q Consensus 121 ~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L 160 (243)
+++|..||.+. -.-|.|+..+.|..++++...+
T Consensus 12 ld~l~~LEkqF-------~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 12 VSEMLDLEKQF-------SELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666443 3345667777777777665443
No 52
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=34.51 E-value=3.4 Score=30.48 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=34.7
Q ss_pred ecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceeeec
Q 026143 11 IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 (243)
Q Consensus 11 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s 59 (243)
|+++.-...||-=.-..|.+|.-+||.+| ++.|++.||-|-.-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~ldT 64 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRLDT 64 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEecc
Confidence 45566667777778888889999999665 999999999876644
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=33.65 E-value=1.1e+02 Score=21.32 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=22.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 142 KTQYMLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 142 K~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
|-+-..+.|.-|+-....|.++|..|..+..+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777777777776665
No 54
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=33.62 E-value=1.5e+02 Score=22.30 Aligned_cols=56 Identities=9% Similarity=0.012 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 118 PLNSKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 118 ~Ls~~EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
++|++|+..+-...+..-..+..+ .+++.+++..+.++...|+..-..|..++...
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~~~-~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~ 128 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTILHR-LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKY 128 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhhhcCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999888766443322222222 24667788888888888888777777776653
No 55
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=32.97 E-value=79 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 026143 123 ELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 123 EL~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~ke~~L~eeN~~L 167 (243)
.+.+|+.+++.. ..|++.+.+.+..++++...|.+++..|
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555554332 3344556677777777777777777665
No 56
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=32.76 E-value=81 Score=18.87 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHH
Q 026143 117 GPLNSKELEQLERQLESSLKHVR 139 (243)
Q Consensus 117 ~~Ls~~EL~~LE~qLe~sL~~IR 139 (243)
+++|.+||..||..|..--+++-
T Consensus 15 egfspeelaaleselqalekkla 37 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLA 37 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Confidence 45899999999988765444443
No 57
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=32.68 E-value=1.3e+02 Score=21.10 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
..+++.+...|..+|..|+.++.....+
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E 65 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRE 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888765443
No 58
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=31.46 E-value=23 Score=29.77 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=0.0
Q ss_pred eeecCCcCcchhhhhhhhcHHHhHHHhhcccCcceeeeEeeCCCCceee
Q 026143 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEF 57 (243)
Q Consensus 9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~ 57 (243)
-.|++...=++|+.||-.|+..|-.+|..--|-+=++ .||+|
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFew 158 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEM 158 (246)
T ss_dssp -------------------------------------------------
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchh-------hHHHH
Confidence 3455555558999999999999988887544333332 46666
No 59
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=31.16 E-value=57 Score=18.81 Aligned_cols=24 Identities=13% Similarity=0.310 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+++|..|...|..+|..|..++..
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~R 26 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHH
Confidence 345555666666666666665544
No 60
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=30.79 E-value=78 Score=18.08 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+++|..|...|..+|..|..++..
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~R 25 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLAR 25 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHH
Confidence 345556667777777777666554
No 61
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.74 E-value=1.3e+02 Score=20.42 Aligned_cols=27 Identities=15% Similarity=0.010 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 147 LDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 147 ~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
.+++..|+.....|..+|..|..++..
T Consensus 53 ~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 53 RRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666677777666543
No 62
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=30.44 E-value=4.5e+02 Score=26.72 Aligned_cols=29 Identities=10% Similarity=0.304 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q 026143 125 EQLERQLESSLKHVRSTKTQYMLDQLSDLQ 154 (243)
Q Consensus 125 ~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk 154 (243)
+++...|+..+..+..-+. .+.+++++|.
T Consensus 1015 ~~~~~~L~~kv~~L~~e~~-~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1015 DKYKHETEQLVSELKEQNT-LLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344444444444444332 2344444444
No 63
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=29.99 E-value=28 Score=25.06 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=41.3
Q ss_pred chhhHHHhhhhcccCcc--ccCCCchh--hHhHHHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHHHHHHHHHhH
Q 026143 62 SMLKTLERYQKCSYGAV--EVNKPAKE--LESSYREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLK 136 (243)
Q Consensus 62 sm~~ileRY~~~~~~~~--~~~~~~~e--~~~~~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~LE~qLe~sL~ 136 (243)
.++++|++|+......+ ..+...+. .--.+.-..++|.++++ .+|+ ++.+++..+.++|+.+++.-+.
T Consensus 21 ~a~~lL~~Yk~~l~~~~~~~~D~s~P~f~aaA~~~acr~~K~kVdK-----~KL~--~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 21 MASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDK-----NKMV--ATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHHHTTSCHHHHHHCCTTSHHHHHHHHHHHHHHTTCCCCH-----HHHH--HTTCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHhhccccccccHHHHHHHHHHHHHHccCCCH-----HHHH--HHHCCCHHHHHHHHHHHHHHHH
Confidence 48899999997643221 11111121 12344445556656554 3333 4677999999999999987554
No 64
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=29.94 E-value=60 Score=17.74 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026143 157 EQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 157 e~~L~eeN~~L~~kl~~~ 174 (243)
-..|..+|++|+.++++.
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456788899998888774
No 65
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=28.78 E-value=1e+02 Score=20.98 Aligned_cols=27 Identities=26% Similarity=0.254 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLDEI 174 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~~~ 174 (243)
+-|..|+.....|.+++..|+..+.+.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888999999998888764
No 66
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.71 E-value=98 Score=22.35 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKLDEINA 176 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl~~~~~ 176 (243)
+++..|+++...|..+|..|++.+...+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888888888888888888776544
No 67
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.37 E-value=6.5 Score=27.34 Aligned_cols=56 Identities=13% Similarity=0.225 Sum_probs=36.9
Q ss_pred HHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhcccCccccCCCchhhHhHHHHHHHhHHHHHH
Q 026143 29 LKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFES 103 (243)
Q Consensus 29 ~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~~~~~~~~~~~~~e~~~~~~E~~kLk~kie~ 103 (243)
+|+|+|.+.+++=|.|++.|. ++-+-|+||........ .-+.|..=...+.++.+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~------------g~~~qI~k~l~~~~d~~-------~r~kW~~~~~ei~~E~~~ 71 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ------------GVLDQMNKYLYSVKDTH-------LRQKWQQVWQEINVEAKQ 71 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH------------HHHHHHHHHHHTCSCHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH------------HHHHHHHHHHHhcCCHH-------HHHhHHHHHHHHHHHHHH
Confidence 689999999999999887653 37777888887653211 114555544445555444
No 68
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.28 E-value=1.2e+02 Score=19.41 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDEIN 175 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~~~ 175 (243)
+.+.+-.|+.....|..+|+.|.+-+++..
T Consensus 8 lVDtVYaLkDqV~eL~qe~k~m~k~lEeEq 37 (56)
T 2w6b_A 8 LVDTVYALKDEVQELRQDNKKMKKSLEEEQ 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777778888888887777643
No 69
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=28.25 E-value=56 Score=25.82 Aligned_cols=37 Identities=11% Similarity=0.446 Sum_probs=27.3
Q ss_pred hcccCcceeeeEeeCCCCcee-eeccc------chhhHHHhhhh
Q 026143 36 SVLCDAEVALIIFSNRGKLYE-FCSSS------SMLKTLERYQK 72 (243)
Q Consensus 36 SvLCdaeValIifS~~Gkl~e-~~s~~------sm~~ileRY~~ 72 (243)
+.-|++.|-+++||++-+.|- |--.+ .+.+||+.|++
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999999887 65332 26666666655
No 70
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=27.08 E-value=46 Score=20.85 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHhhhhhhhccCCCCCCCHHHHHHH
Q 026143 91 YREYLKLKTRFESLQRTQRNLLGEDLGPLNSKELEQL 127 (243)
Q Consensus 91 ~~E~~kLk~kie~Lq~~~r~l~GedL~~Ls~~EL~~L 127 (243)
..|+.+|..+|+.||+..-.-+ -.|..-|..+|+.+
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~-~~L~e~s~~eL~~~ 40 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQE-LSLTEASLQKLQER 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhHhHHHHHHHH
Confidence 3578888889998887543211 12344466666655
No 71
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=26.39 E-value=1.6e+02 Score=20.15 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDEINAK 177 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~~~~~ 177 (243)
..+++.+...|..+|..|+.++.....+
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E 65 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRE 65 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999998875543
No 72
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=26.18 E-value=86 Score=18.45 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRAL 167 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L 167 (243)
+||..|+.|...|.++.-.|
T Consensus 15 eQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554443
No 73
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.94 E-value=72 Score=25.63 Aligned_cols=23 Identities=26% Similarity=0.318 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIK 170 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~k 170 (243)
+.|.+|+.+...|+++|..|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 56688888999999999998654
No 74
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=25.49 E-value=57 Score=21.08 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=21.3
Q ss_pred eeEeeCCCCceeeecccchhhHHHhh
Q 026143 45 LIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 45 lIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
+.|+-|+|+.++|+...++..++..+
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSL 28 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHH
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHH
Confidence 45777899999999877788888776
No 75
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=25.07 E-value=1e+02 Score=17.91 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026143 151 SDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 151 ~~Lk~ke~~L~eeN~~L~~kl 171 (243)
++|..|+..|..+|..|..++
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV 24 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEV 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444554444443
No 76
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=24.79 E-value=1.8e+02 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHh
Q 026143 115 DLGPLNSKELEQLERQLESSLKHVRSTKTQY 145 (243)
Q Consensus 115 dL~~Ls~~EL~~LE~qLe~sL~~IR~rK~ql 145 (243)
+|++ |.++|+.+=..|...+..+-+-|..+
T Consensus 52 nid~-se~~L~e~ckELh~~I~~LEeEKYDl 81 (182)
T 1ytz_I 52 SLPG-SMQELQELSKKLHAKIDSVDEERYDT 81 (182)
T ss_dssp CCCC-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7888 99999999999999888887777644
No 77
>2lg7_A Uncharacterized protein; APSY spectroscopy, structural genomics, joint center for STR genomics, JCSG, calcium-binding protein; NMR {Parabacteroides distasonis} PDB: 2lge_A
Probab=24.53 E-value=33 Score=24.65 Aligned_cols=25 Identities=40% Similarity=0.636 Sum_probs=20.2
Q ss_pred hcccCcceee--eEeeCCCCceeeecc
Q 026143 36 SVLCDAEVAL--IIFSNRGKLYEFCSS 60 (243)
Q Consensus 36 SvLCdaeVal--IifS~~Gkl~e~~s~ 60 (243)
-||.|-|.|+ +-.|.+||..+|+-+
T Consensus 52 vilsdeelavekvtlsttgkaiefavs 78 (129)
T 2lg7_A 52 VILSDEELAVEKVTLSTTGKAIEFAVS 78 (129)
T ss_dssp CBCCGGGCCCSEEEEEESSCCSCEECC
T ss_pred eEecchhheEEEEEeecccceEEEEee
Confidence 3688888876 667999999999854
No 78
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=24.31 E-value=85 Score=16.60 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=4.9
Q ss_pred HHHHHHhHHHHHH
Q 026143 91 YREYLKLKTRFES 103 (243)
Q Consensus 91 ~~E~~kLk~kie~ 103 (243)
+.|+..|.+++.+
T Consensus 7 ykeledlqerlrk 19 (27)
T 3twe_A 7 YKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.19 E-value=1.5e+02 Score=19.16 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
....+|+.+...|..++..|+.-|
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555443
No 80
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=23.77 E-value=93 Score=17.89 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+++|..|+..|..+|..|...+..
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~R 26 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 345555666666666666655543
No 81
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=23.44 E-value=1.1e+02 Score=21.17 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+..+|+.++.....|.++|..|..-..+
T Consensus 39 Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 39 LHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666777777777554443
No 82
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=23.40 E-value=3e+02 Score=28.40 Aligned_cols=44 Identities=16% Similarity=0.337 Sum_probs=28.3
Q ss_pred hhcHHHhHHHhhcccCcceeeeEeeCCCCceeeecccchhhHHHhhhhc
Q 026143 25 RNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKC 73 (243)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIifS~~Gkl~e~~s~~sm~~ileRY~~~ 73 (243)
.++|+|+- .|..-..+ .-+++|.+.|++..|.| ++.||+-|-.+
T Consensus 957 ~~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~~---l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 957 KIGFYERF-KLISPISL-MNMVAFDPHGKIKKYNS---VNEILSEFYYV 1000 (1177)
T ss_dssp HHCHHHHT-TCEEEECC-SCCEEECTTSCEEECSS---HHHHHHHHHHH
T ss_pred HHhHHHhc-cCcceecc-eEEEEEcCCCCccCcCC---HHHHHHHHHHH
Confidence 35666553 24332222 25789999999998853 77888877543
No 83
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=22.97 E-value=84 Score=19.87 Aligned_cols=14 Identities=14% Similarity=0.145 Sum_probs=9.7
Q ss_pred CCCCCHHHHHHHHH
Q 026143 116 LGPLNSKELEQLER 129 (243)
Q Consensus 116 L~~Ls~~EL~~LE~ 129 (243)
|..||++||++--.
T Consensus 7 Lk~ls~eEL~~rl~ 20 (51)
T 2jo8_A 7 LKSWTVEDLQKRLL 20 (51)
T ss_dssp GGGSCHHHHHHHHH
T ss_pred HHhCCHHHHHHHHH
Confidence 55678998886443
No 84
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=22.67 E-value=1.6e+02 Score=18.78 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 146 MLDQLSDLQNKEQLLLDTNRALTIKL 171 (243)
Q Consensus 146 m~e~i~~Lk~ke~~L~eeN~~L~~kl 171 (243)
+......|+.+...|.+++..|+..|
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555667777777777777776544
No 85
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=22.57 E-value=1e+02 Score=17.75 Aligned_cols=24 Identities=13% Similarity=0.263 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026143 150 LSDLQNKEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 150 i~~Lk~ke~~L~eeN~~L~~kl~~ 173 (243)
+++|..|...|..+|..|..++..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 345566777777777777766654
No 86
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.26 E-value=1.4e+02 Score=18.05 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026143 148 DQLSDLQNKEQLLLDTN 164 (243)
Q Consensus 148 e~i~~Lk~ke~~L~eeN 164 (243)
++|.+||+|.+.|.+.-
T Consensus 23 ~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 23 QQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 56778888888777653
No 87
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin, thiordoxin-like, oxidoreductase; NMR {Desulfovibrio fructosovorans}
Probab=22.17 E-value=36 Score=23.16 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=20.9
Q ss_pred cCcceeeeEeeCCCCceeeecccchhhHHHhh
Q 026143 39 CDAEVALIIFSNRGKLYEFCSSSSMLKTLERY 70 (243)
Q Consensus 39 CdaeValIifS~~Gkl~e~~s~~sm~~ileRY 70 (243)
|+..-.++|. |.+|...++..+.+||+.|
T Consensus 57 C~~~P~v~V~---~~~y~~vt~e~v~~il~~~ 85 (85)
T 2auv_A 57 CALAPIVMVG---EKVYGNVTPGQVKKILAEY 85 (85)
T ss_dssp CTTSCCCEEG---GGCCCCSSSSHHHHHHHHC
T ss_pred CCCCCEEEEC---CEEECCCCHHHHHHHHHhC
Confidence 6555555553 7888877887899998875
No 88
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.51 E-value=5e+02 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=6.8
Q ss_pred chhhHHHhhhh
Q 026143 62 SMLKTLERYQK 72 (243)
Q Consensus 62 sm~~ileRY~~ 72 (243)
.|+.+|++..+
T Consensus 50 rLQglLdkqEr 60 (562)
T 3ghg_A 50 RMKGLIDEVNQ 60 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhhHHhhcC
Confidence 36777766644
No 89
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=21.22 E-value=88 Score=20.54 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=25.0
Q ss_pred CCCCCCCHHH----HHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHH
Q 026143 114 EDLGPLNSKE----LEQLERQLESSLKHVRSTKTQYMLDQLSDLQNK 156 (243)
Q Consensus 114 edL~~Ls~~E----L~~LE~qLe~sL~~IR~rK~qlm~e~i~~Lk~k 156 (243)
.+...++.++ +..|+.++..+.....--+...+.++|..|+++
T Consensus 12 ~~~~~ls~~~~~~~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~ 58 (63)
T 1e52_A 12 NVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLREL 58 (63)
T ss_dssp TSSCCSCCSHHHHHHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHH
T ss_pred cchhhcCHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3455566444 445556666665555555566666777776654
No 90
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=21.13 E-value=21 Score=30.13 Aligned_cols=19 Identities=32% Similarity=0.756 Sum_probs=12.7
Q ss_pred cceeeeEeeCCCCcee--eec
Q 026143 41 AEVALIIFSNRGKLYE--FCS 59 (243)
Q Consensus 41 aeValIifS~~Gkl~e--~~s 59 (243)
-|-++-+|||.|+||. |+.
T Consensus 12 yd~~~t~fSp~Grl~QvEYA~ 32 (264)
T 3h4p_A 12 YDRAITVFSPEGRLYQVEYAR 32 (264)
T ss_dssp ----CCCCCSSSSCHHHHHHH
T ss_pred cCCCcceECCCCeeHHHHhHH
Confidence 4667889999999986 653
No 91
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=20.59 E-value=20 Score=29.48 Aligned_cols=15 Identities=27% Similarity=0.753 Sum_probs=12.3
Q ss_pred eeeEeeCCCCcee--ee
Q 026143 44 ALIIFSNRGKLYE--FC 58 (243)
Q Consensus 44 alIifS~~Gkl~e--~~ 58 (243)
++-+|||.|+||. |+
T Consensus 3 ~~t~fsp~Grl~QvEyA 19 (242)
T 1ryp_E 3 GVSTFSPEGRLFQVEYS 19 (242)
T ss_dssp CTTCBCTTSCBHHHHHH
T ss_pred CCceECCCCcChHHHhH
Confidence 5668999999986 65
No 92
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=20.13 E-value=2.6e+02 Score=20.48 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCCCCHHHHH----HHHHHHHHHhHHHHHHHHHhHHH--HH--HHHHH---HHHHHHHHHHHHHHHHHH
Q 026143 115 DLGPLNSKELE----QLERQLESSLKHVRSTKTQYMLD--QL--SDLQN---KEQLLLDTNRALTIKLDE 173 (243)
Q Consensus 115 dL~~Ls~~EL~----~LE~qLe~sL~~IR~rK~qlm~e--~i--~~Lk~---ke~~L~eeN~~L~~kl~~ 173 (243)
.-++++++||+ ..|.||..|-.+++.-..+.-.+ .+ ..+++ -+..|+..-..|++.|.+
T Consensus 18 ~~~~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 18 GPGSMTMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELKRQLAD 87 (113)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778887766 58888888888887766544331 11 12222 234455555555555555
No 93
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=20.04 E-value=22 Score=30.55 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=15.5
Q ss_pred cccCcceeeeEeeCCCCcee
Q 026143 37 VLCDAEVALIIFSNRGKLYE 56 (243)
Q Consensus 37 vLCdaeValIifS~~Gkl~e 56 (243)
+-.+-|-++-+|||.|+||.
T Consensus 4 ~~~~yd~~~t~fSP~Grl~Q 23 (288)
T 3nzj_F 4 IGTGYDLSNSVFSPDGRNFQ 23 (288)
T ss_dssp -CCCTTSSTTCCCTTSCCHH
T ss_pred CcCCccCCcccCCCCCchHH
Confidence 44556778889999999986
Done!