BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026144
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 33.1 bits (74), Expect = 0.15, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 160 VLRVS-IHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKKA 217
V RV + C C K +++ ++EGVT ++ K+T+ G+ AS+ V++A
Sbjct: 6 VYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-------ASIQQVEQA 57
>pdb|2VOY|A Chain A, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
pdb|1JWW|A Chain A, Nmr Characterization Of The N-Terminal Domain Of A
Potential Copper-Translocating P-Type Atpase From
Bacillus Subtilis
Length = 80
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 167 CKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKKA 217
C C ++ K ++K+EGV + ++ + VT+ + P ASVS +K+A
Sbjct: 14 CAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKE--ASVSDLKEA 60
>pdb|1KQK|A Chain A, Solution Structure Of The N-Terminal Domain Of A Potential
Copper-Translocating P-Type Atpase From Bacillus
Subtilis In The Cu(I)loaded State
Length = 80
Score = 31.2 bits (69), Expect = 0.49, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 167 CKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKKA 217
C C ++ K ++K+EGV + ++ + VT+ + P ASVS +K+A
Sbjct: 14 CAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKE--ASVSDLKEA 60
>pdb|2RML|A Chain A, Solution Structure Of The N-Terminal Soluble Domains Of
Bacillus Subtilis Copa
Length = 147
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 164 SIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKKA 217
+ C C ++ K ++K+EGV + ++ + VT+ + P ASVS +K+A
Sbjct: 82 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKE--ASVSDLKEA 131
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 30.4 bits (67), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 164 SIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKKA 217
+ C C ++ K ++K+EGV + ++ + VT+ + P ASVS +K+A
Sbjct: 82 GMTCAACANRIEKRLNKIEGVANAPVNFALETVTV--EYNPKE--ASVSDLKEA 131
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKK 216
+ +HC+ C ++ + + G+ S + D+ + +++ V PS ++ ++ + K
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGK 66
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 164 SIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSS 213
+I C+ C V K + + + +DLT+KKVTI + + +++S
Sbjct: 9 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKK 216
V + C GC V + ++K+ GV + IDL KKV I + + +LA++ K
Sbjct: 7 VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 59
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1 And
Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 29.6 bits (65), Expect = 1.6, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKK 216
V + C GC V + ++K+ GV + IDL KKV I + + +LA++ K
Sbjct: 8 VDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 164 SIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSS 213
+I C+ C V K + + + +DLT+KKVTI + + +++S
Sbjct: 9 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 29.3 bits (64), Expect = 2.1, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 164 SIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSS 213
+I C+ C V K + + + +DLT+KKVTI + + +++S
Sbjct: 8 TIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 57
>pdb|2ROP|A Chain A, Solution Structure Of Domains 3 And 4 Of Human Atp7b
Length = 202
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 158 VVVLRVSI---HCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTI 198
VV L++ I HCK C + ++I ++ GV S + L K +
Sbjct: 19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQV 62
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 165 IHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGD 201
+ C C V+K ISK+EGV+ + T++ + D
Sbjct: 12 MTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD 48
>pdb|3ZU3|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh (Mr, Cleaved Histag)
pdb|3ZU4|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt172
pdb|3ZU5|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh And The 2-Pyridone
Inhibitor Pt173
Length = 405
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSS 213
V+ H GCE V+K I + T I K+V +IG T G+ A +++
Sbjct: 19 VTAHPTGCEANVKKQIDYV--TTEGPIANGPKRVLVIGASTGYGLAARITA 67
>pdb|3ZU2|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
Pestis With The Cofactor Nadh (Siras)
Length = 422
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSS 213
V+ H GCE V+K I + T I K+V +IG T G+ A +++
Sbjct: 36 VTAHPTGCEANVKKQIDYV--TTEGPIANGPKRVLVIGASTGYGLAARITA 84
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 163 VSIHCKGCEGKVRKHISKMEGVTSFSIDLTTKKVTIIGDVTPSGVLASVSSVKK 216
+ HC+ C ++ + + G+ S + D+ + ++ V PS ++ ++ + K
Sbjct: 12 IPXHCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGK 65
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I) Form
Of The Second Metal-Binding Domain Of The Menkes Protein
Atp7a
Length = 76
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 159 VVLRVSIH---CKGCEGKVRKHISKMEGVTSFSIDLTTKKVTII 199
VVL++ + C C + I K++GV + L ++ TI+
Sbjct: 3 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 46
>pdb|3QFG|A Chain A, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
pdb|3QFG|B Chain B, Structure Of A Putative Lipoprotein From Staphylococcus
Aureus Subsp. Aureus Nctc 8325
Length = 242
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 105 YLLSDKPFTDWKSESDHHATALVRSQSAKPKLV 137
YLLSDK + DW ++H+ + + ++A+ +
Sbjct: 131 YLLSDKKYKDW---TEHNQDQIKKGKTAQAXFI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,250,335
Number of Sequences: 62578
Number of extensions: 148487
Number of successful extensions: 432
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 416
Number of HSP's gapped (non-prelim): 26
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)