BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026145
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
F SQAIEL P I+ Y +R LA L + AL D A+EL Y + Y + +
Sbjct: 43 FYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNM 100
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSK 235
A+ ++ AA + Y T +++ P + +K
Sbjct: 101 ALGKFRAALRDYETVVKVKPHDKDAK 126
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
F SQAIEL P I+ Y +R LA L + AL D A+EL Y + Y + +
Sbjct: 28 FYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSK 235
A+ ++ AA + Y T +++ P + +K
Sbjct: 86 ALGKFRAALRDYETVVKVKPHDKDAK 111
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
F SQAIEL P I+ Y +R LA L + AL D A+EL Y + Y + +
Sbjct: 35 FYSQAIELNPSNAIY--YGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSK 235
A+ ++ AA + Y T +++ P + +K
Sbjct: 93 ALGKFRAALRDYETVVKVKPHDKDAK 118
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
EA + +A+EL P Y + A G++ A+E ++ALEL PN EA+
Sbjct: 26 DEAIEYYQKALELDP-NNAEAWY-NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
G+ + YD A + Y L++DP+ +K
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
A G++ A+E ++ALEL PN EA+ G+ + YD A + Y L++DP+
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
A G++ A+E ++ALEL PN EA+ G+ + YD A + Y L++DP+
Sbjct: 18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77
Query: 233 RSKS 236
+K
Sbjct: 78 EAKQ 81
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
F +AIEL P ++ +R A +GN++ A++D A+ + P Y++AY G
Sbjct: 34 FYGKAIELNPANAVYFC--NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSKS 236
+++++ A Y L++DP KS
Sbjct: 92 SLNKHVEAVAYYKKALELDPDNETYKS 118
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
+ +A+EL P Y + A G++ A+E ++ALEL PN +A+ +G+ +
Sbjct: 31 YYQKALELDP-NNASAWY-NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYY 88
Query: 210 AMDQYDAAEKSYSTCLQIDPSIRRSKS 236
Y A + Y L++DP+ ++K
Sbjct: 89 KQGDYQKAIEDYQKALELDPNNAKAKQ 115
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226
+K+ A G++ A+E ++ALEL PN A+ G+ + Y A + Y L+
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 227 IDPS-----IRRSKSFKVSSTY 243
+DP+ RR ++ Y
Sbjct: 72 LDPNNAKAWYRRGNAYYKQGDY 93
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
EA + +A+EL P Y + A G++ A+E ++ALEL PN EA+
Sbjct: 26 DEAIEYYQKALELYP-NNAEAWY-NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
G+ + YD A + Y L++ P+ +K
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230
A G++ A+E ++ALEL PN EA+ G+ + YD A + Y L++ P+
Sbjct: 18 AYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 152 SQAIELKPFGGIHVLYKDR--CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209
++A++ P I LY +R CL +L F AL+D + L + + YI + +
Sbjct: 37 NEAVKRDPENAI--LYSNRAACLTKLM--EFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92
Query: 210 AMDQYDAAEKSYSTCLQIDPS 230
AM ++ A+++Y LQ+DPS
Sbjct: 93 AMREWSKAQRAYEDALQVDPS 113
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 40.0 bits (92), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
A G++ A+E ++ALEL P EA+ G+ + YD A + Y L++DP
Sbjct: 12 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
EA + +A+EL P + + A G++ A+E ++ALEL P EA+
Sbjct: 18 DEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDP 229
G+ + YD A + Y L++DP
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDP 100
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
EA + +A+EL P + + A G++ A+E ++ALEL P EA+
Sbjct: 52 DEAIEYYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDP 229
G+ + YD A + Y L++DP
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDP 134
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
A G++ A+E ++ALEL P EA+ G+ + YD A + Y L++DP
Sbjct: 10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223
++ Y R L MG AAL D+ + ++L ++T A + +G + L + D AE +
Sbjct: 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK 119
Query: 224 CLQIDPSIRRSKS 236
L+ +PS K
Sbjct: 120 VLKSNPSENEEKE 132
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 150 FLSQAIELKP-----FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
F + AI+ P + + +YK+R G A+E R AL L P++ + YI
Sbjct: 55 FSTLAIKQNPLLAEAYSNLGNVYKER-------GQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 205 GDVFLAMDQYDAAEKSYSTCLQIDPSI 231
+A + A ++Y + LQ +P +
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDL 134
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205
EA +AIE +P V + + G A+ +A+ L PN+ +AYI G
Sbjct: 153 EAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 206 DVFLAMDQYDAAEKSYSTCLQIDPS 230
+V +D A +Y L + P+
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPN 235
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234
L + FSAA+E +ALEL N + +G+ LA++ ++ A + LQ+ P+ + +
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Query: 235 KS 236
K+
Sbjct: 267 KT 268
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236
G AL +EA+ ++P + +AY G+ M A + Y+ +QI+P+ + S
Sbjct: 57 GKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205
EA +AI P + V Y +R L L M AL D R ALEL +A+ G
Sbjct: 27 EAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84
Query: 206 DVFLAMDQYDAA----EKSYS 222
L M+ YD A +++YS
Sbjct: 85 QCQLEMESYDEAIANLQRAYS 105
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234
L + FSAA+E +ALEL N + +G+ LA++ ++ A + LQ+ P+ + +
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266
Query: 235 KS 236
K+
Sbjct: 267 KT 268
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205
EA +AI P + V Y +R L L M AL D R ALEL +A+ G
Sbjct: 22 EAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79
Query: 206 DVFLAMDQYDAA----EKSYS 222
L M+ YD A +++YS
Sbjct: 80 QCQLEMESYDEAIANLQRAYS 100
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Query: 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205
+A ++AI+ P LY +R + F AL+D E ++L P + + Y +
Sbjct: 34 QAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91
Query: 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234
AM Y A Y L +D S + +
Sbjct: 92 AALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|1F37|A Chain A, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
Aquifex Aeolicus
pdb|1F37|B Chain B, Structure Of A Thioredoxin-Like [2fe-2s] Ferredoxin From
Aquifex Aeolicus
pdb|1M2A|A Chain A, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
Aeolicus
pdb|1M2A|B Chain B, Crystal Structure At 1.5 Angstroms Resolution Of The Wild
Type Thioredoxin-Like [2fe-2s] Ferredoxin From Aquifex
Aeolicus
Length = 110
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 38 AELKELRVCTNR--------TCRRQGSMQILETLSS--LAPPEV----AVKSCGCLGRCG 83
AE K + VC +C ++GS ++ + P++ + GC+ C
Sbjct: 1 AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNACM 60
Query: 84 AGPNLVALPDGVVVGHCGTPARASEIL 110
GP +V PDGV G P EI+
Sbjct: 61 MGPVVVVYPDGVWYGQV-KPEDVDEIV 86
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA 217
Y +R A + +F A+ D +A+E PN+ AYI + +A+ +Y +A
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 91
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204
S+A +QA+ + P I++ +R A G A ED A + P Y++A+
Sbjct: 28 SKAIDLYTQALSIAPANPIYL--SNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85
Query: 205 GDVFLAMDQYDAAEKSYSTCLQID 228
G M Y A+++Y ++ +
Sbjct: 86 GLARFDMADYKGAKEAYEKGIEAE 109
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232
+L M ++ A++ EALE+ P+ T+A + + + +YD A +I P +
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK 341
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA 217
Y +R A + +F A+ D +A+E PN+ AYI + +A+ +Y +A
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA 226
>pdb|1V5L|A Chain A, Solution Structure Of Pdz Domain Of Mouse Alpha-Actinin-2
Associated Lim Protein
Length = 103
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 12/54 (22%)
Query: 200 AYICQGDVFLAMDQY--------DAAEK----SYSTCLQIDPSIRRSKSFKVSS 241
A +C GDV LA+D + DA ++ SY CL+ID + R S +VSS
Sbjct: 45 ANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAETRLWSPQVSS 98
>pdb|1M2B|A Chain A, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
pdb|1M2B|B Chain B, Crystal Structure At 1.25 Angstroms Resolution Of The
Cys55ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 38 AELKELRVCTNR--------TCRRQGSMQILETLSS--LAPPEV----AVKSCGCLGRCG 83
AE K + VC +C ++GS ++ + P++ + G + C
Sbjct: 1 AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGSMNACM 60
Query: 84 AGPNLVALPDGVVVGHCGTPARASEIL 110
GP +V PDGV G P EI+
Sbjct: 61 MGPVVVVYPDGVWYGQV-KPEDVDEIV 86
>pdb|1M2D|A Chain A, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
pdb|1M2D|B Chain B, Crystal Structure At 1.05 Angstroms Resolution Of The
Cys59ser Variant Of The Thioredoxin-Like [2fe-2s]
Ferredoxin From Aquifex Aeolicus
Length = 110
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 15/87 (17%)
Query: 38 AELKELRVCTNR--------TCRRQGSMQILETLSS--LAPPEV----AVKSCGCLGRCG 83
AE K + VC +C ++GS ++ + P++ + GC+
Sbjct: 1 AEFKHVFVCVQDRPPGHPQGSCAQRGSREVFQAFMEKIQTDPQLFMTTVITPTGCMNASM 60
Query: 84 AGPNLVALPDGVVVGHCGTPARASEIL 110
GP +V PDGV G P EI+
Sbjct: 61 MGPVVVVYPDGVWYGQV-KPEDVDEIV 86
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 178 GNFSAALEDVREALELAPNYTEAYICQG 205
GNF AA E LEL P Y A++ +G
Sbjct: 91 GNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224
VLY L L +FS AL +R NY Y+ Q F DAA +++ +
Sbjct: 51 VLYDSLGLRALARNDFSQALA-IRPDXPEVFNYLGIYLTQAGNF------DAAYEAFDSV 103
Query: 225 LQIDPS 230
L++DP+
Sbjct: 104 LELDPT 109
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 189 EALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229
+AL+L N + Y +G + + YD A K + ++DP
Sbjct: 295 KALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,147,119
Number of Sequences: 62578
Number of extensions: 207068
Number of successful extensions: 520
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 453
Number of HSP's gapped (non-prelim): 61
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)