Query 026145
Match_columns 243
No_of_seqs 373 out of 2755
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.8 2.4E-18 5.1E-23 124.1 14.2 123 107-241 13-135 (144)
2 KOG0553 TPR repeat-containing 99.8 1.3E-18 2.9E-23 134.3 12.9 115 124-240 77-191 (304)
3 KOG4626 O-linked N-acetylgluco 99.7 5.3E-17 1.1E-21 136.0 13.9 137 94-239 293-429 (966)
4 KOG4626 O-linked N-acetylgluco 99.7 1.1E-17 2.4E-22 140.0 9.7 138 93-239 360-497 (966)
5 PRK10370 formate-dependent nit 99.7 1.5E-16 3.2E-21 120.7 14.4 127 100-235 52-181 (198)
6 TIGR02552 LcrH_SycD type III s 99.7 1.9E-16 4.2E-21 113.1 14.1 124 108-240 4-127 (135)
7 COG3063 PilF Tfp pilus assembl 99.7 1.7E-16 3.6E-21 118.4 11.9 138 94-241 42-182 (250)
8 PRK11189 lipoprotein NlpI; Pro 99.7 9.1E-16 2E-20 123.8 16.7 128 101-233 40-167 (296)
9 TIGR00990 3a0801s09 mitochondr 99.7 2.6E-16 5.7E-21 139.3 13.4 139 94-241 338-476 (615)
10 KOG1126 DNA-binding cell divis 99.7 5.8E-17 1.3E-21 136.5 7.3 142 93-243 427-568 (638)
11 PRK15363 pathogenicity island 99.7 4.1E-15 8.8E-20 106.1 13.7 104 126-231 33-136 (157)
12 KOG1155 Anaphase-promoting com 99.7 1.2E-15 2.6E-20 123.9 12.1 139 94-241 337-475 (559)
13 PLN03088 SGT1, suppressor of 99.7 2.9E-15 6.3E-20 123.6 13.8 110 130-241 4-113 (356)
14 TIGR00990 3a0801s09 mitochondr 99.6 6.2E-15 1.3E-19 130.6 15.7 135 101-241 308-442 (615)
15 KOG0548 Molecular co-chaperone 99.6 5.5E-15 1.2E-19 122.0 13.7 146 94-241 305-469 (539)
16 PRK09782 bacteriophage N4 rece 99.6 1.2E-14 2.6E-19 132.8 16.2 129 101-239 590-718 (987)
17 PRK12370 invasion protein regu 99.6 8.7E-15 1.9E-19 127.8 14.4 127 102-237 276-411 (553)
18 KOG1126 DNA-binding cell divis 99.6 5E-15 1.1E-19 124.9 10.8 139 94-241 462-600 (638)
19 PRK12370 invasion protein regu 99.6 2E-14 4.4E-19 125.5 14.6 133 100-241 317-450 (553)
20 PRK15359 type III secretion sy 99.6 3.1E-14 6.6E-19 102.7 12.6 109 94-211 31-139 (144)
21 TIGR02521 type_IV_pilW type IV 99.6 4.8E-14 1E-18 109.0 14.7 139 94-241 38-178 (234)
22 cd03063 TRX_Fd_FDH_beta TRX-li 99.6 2.3E-14 5E-19 93.3 9.0 73 42-116 2-80 (92)
23 KOG0547 Translocase of outer m 99.6 3.1E-14 6.7E-19 116.5 11.2 141 93-242 332-472 (606)
24 TIGR02521 type_IV_pilW type IV 99.6 7.7E-14 1.7E-18 107.8 13.1 141 93-240 71-211 (234)
25 TIGR02795 tol_pal_ybgF tol-pal 99.6 1.7E-13 3.6E-18 95.4 13.3 113 128-240 2-118 (119)
26 PF01257 2Fe-2S_thioredx: Thio 99.5 7.8E-15 1.7E-19 105.3 5.6 96 4-113 40-144 (145)
27 PRK07539 NADH dehydrogenase su 99.5 1.6E-14 3.4E-19 104.7 7.0 95 4-112 49-152 (154)
28 PRK09782 bacteriophage N4 rece 99.5 2.2E-13 4.8E-18 124.6 16.1 136 96-241 551-686 (987)
29 TIGR01958 nuoE_fam NADH-quinon 99.5 2.1E-14 4.5E-19 103.4 7.2 95 4-112 43-146 (148)
30 PRK15174 Vi polysaccharide exp 99.5 2.4E-13 5.1E-18 120.9 15.4 132 96-236 221-356 (656)
31 PLN02789 farnesyltranstransfer 99.5 3.7E-13 8E-18 109.0 14.8 133 100-241 50-185 (320)
32 KOG0550 Molecular chaperone (D 99.5 1.4E-13 3.1E-18 110.6 10.9 139 92-230 208-353 (486)
33 PRK11189 lipoprotein NlpI; Pro 99.5 3.2E-13 7E-18 109.1 12.8 126 93-228 70-195 (296)
34 PRK11447 cellulose synthase su 99.5 5.2E-13 1.1E-17 125.8 15.7 140 94-240 276-427 (1157)
35 cd03064 TRX_Fd_NuoE TRX-like [ 99.5 1.5E-13 3.2E-18 88.8 7.8 70 40-112 1-79 (80)
36 cd02980 TRX_Fd_family Thioredo 99.5 2.4E-13 5.3E-18 87.3 8.7 71 41-112 1-76 (77)
37 PF13429 TPR_15: Tetratricopep 99.5 2.2E-13 4.7E-18 109.4 10.4 139 96-241 119-257 (280)
38 PRK15179 Vi polysaccharide bio 99.5 1E-12 2.2E-17 116.2 15.4 129 95-232 94-222 (694)
39 COG1905 NuoE NADH:ubiquinone o 99.5 1.6E-13 3.4E-18 97.7 8.2 96 5-114 53-157 (160)
40 KOG0548 Molecular co-chaperone 99.5 2.7E-13 5.8E-18 112.2 10.7 110 130-241 4-113 (539)
41 KOG0543 FKBP-type peptidyl-pro 99.5 3.1E-12 6.8E-17 103.2 16.5 116 126-241 206-334 (397)
42 PRK05988 formate dehydrogenase 99.5 1.5E-13 3.3E-18 99.1 7.9 96 4-113 50-154 (156)
43 COG3063 PilF Tfp pilus assembl 99.5 1.1E-12 2.4E-17 98.1 12.2 103 125-230 32-134 (250)
44 PRK15174 Vi polysaccharide exp 99.5 1.3E-12 2.7E-17 116.3 14.7 131 98-237 53-183 (656)
45 PRK15179 Vi polysaccharide bio 99.5 1.5E-12 3.3E-17 115.1 14.8 114 126-241 84-197 (694)
46 PRK11447 cellulose synthase su 99.5 1.8E-12 4E-17 122.2 16.0 134 96-238 360-535 (1157)
47 KOG1155 Anaphase-promoting com 99.5 1.2E-12 2.5E-17 106.8 12.4 124 94-226 371-494 (559)
48 PRK10049 pgaA outer membrane p 99.5 2.1E-12 4.7E-17 116.9 15.6 134 98-241 26-159 (765)
49 PRK07571 bidirectional hydroge 99.5 2.1E-13 4.5E-18 99.3 7.2 96 4-113 63-167 (169)
50 KOG4648 Uncharacterized conser 99.5 6E-13 1.3E-17 105.0 10.2 112 128-241 97-208 (536)
51 cd00189 TPR Tetratricopeptide 99.5 2.2E-12 4.8E-17 85.1 11.7 99 130-230 2-100 (100)
52 TIGR03302 OM_YfiO outer membra 99.5 2.9E-12 6.4E-17 100.1 14.2 144 93-240 39-211 (235)
53 TIGR02917 PEP_TPR_lipo putativ 99.4 1.8E-12 3.9E-17 118.8 14.5 136 96-241 745-880 (899)
54 KOG0553 TPR repeat-containing 99.4 9E-13 1.9E-17 102.3 10.5 114 93-215 87-200 (304)
55 PF13414 TPR_11: TPR repeat; P 99.4 6.9E-13 1.5E-17 83.3 8.2 65 165-229 4-69 (69)
56 PRK02603 photosystem I assembl 99.4 1.1E-11 2.4E-16 92.2 16.0 109 124-232 31-154 (172)
57 COG5010 TadD Flp pilus assembl 99.4 5.7E-12 1.2E-16 96.1 14.0 135 98-241 77-211 (257)
58 cd03081 TRX_Fd_NuoE_FDH_gamma 99.4 6.7E-13 1.4E-17 85.3 7.5 70 40-112 1-79 (80)
59 KOG4234 TPR repeat-containing 99.4 3.8E-12 8.3E-17 93.3 11.9 116 126-241 93-211 (271)
60 KOG1125 TPR repeat-containing 99.4 2.6E-12 5.6E-17 107.3 12.4 141 93-240 291-506 (579)
61 PRK11788 tetratricopeptide rep 99.4 3.1E-12 6.7E-17 107.3 13.2 131 94-231 114-247 (389)
62 PLN02789 farnesyltranstransfer 99.4 4.7E-12 1E-16 102.6 13.6 131 102-241 87-226 (320)
63 cd03083 TRX_Fd_NuoE_hoxF TRX-l 99.4 1.3E-12 2.9E-17 83.9 7.9 70 40-112 1-79 (80)
64 KOG0547 Translocase of outer m 99.4 2E-12 4.3E-17 106.1 10.5 127 95-230 368-494 (606)
65 PF13414 TPR_11: TPR repeat; P 99.4 1.1E-12 2.4E-17 82.3 7.0 67 127-195 2-69 (69)
66 PRK10370 formate-dependent nit 99.4 3.1E-12 6.7E-17 97.1 10.7 100 141-242 52-154 (198)
67 PRK11788 tetratricopeptide rep 99.4 1E-11 2.2E-16 104.2 14.9 129 98-235 191-319 (389)
68 TIGR02917 PEP_TPR_lipo putativ 99.4 2.8E-12 6E-17 117.5 12.3 136 94-238 132-267 (899)
69 cd03082 TRX_Fd_NuoE_W_FDH_beta 99.4 1.9E-12 4.1E-17 81.1 7.7 68 41-111 2-70 (72)
70 cd03062 TRX_Fd_Sucrase TRX-lik 99.4 4.2E-12 9.2E-17 84.6 9.8 75 41-117 2-86 (97)
71 KOG1125 TPR repeat-containing 99.4 1.3E-12 2.8E-17 109.1 8.8 122 102-230 409-530 (579)
72 CHL00033 ycf3 photosystem I as 99.4 2.2E-11 4.8E-16 90.2 14.6 125 102-231 14-153 (168)
73 PF12895 Apc3: Anaphase-promot 99.4 2E-12 4.3E-17 84.5 7.5 84 140-224 1-84 (84)
74 COG4235 Cytochrome c biogenesi 99.4 1.9E-11 4.1E-16 95.5 14.2 122 102-232 137-261 (287)
75 TIGR03302 OM_YfiO outer membra 99.4 7.5E-12 1.6E-16 97.8 12.2 113 126-238 31-155 (235)
76 KOG1173 Anaphase-promoting com 99.4 2.5E-12 5.3E-17 107.2 9.7 139 94-239 387-530 (611)
77 PRK10803 tol-pal system protei 99.4 1.8E-11 3.9E-16 96.5 13.9 114 128-241 142-260 (263)
78 PLN03088 SGT1, suppressor of 99.4 1.1E-11 2.3E-16 102.6 12.7 106 98-212 13-118 (356)
79 PF13432 TPR_16: Tetratricopep 99.4 3.7E-12 8.1E-17 78.9 7.4 64 169-232 2-65 (65)
80 PRK10049 pgaA outer membrane p 99.4 3.1E-11 6.6E-16 109.5 16.3 140 98-239 321-468 (765)
81 KOG0624 dsRNA-activated protei 99.4 5.8E-12 1.3E-16 99.5 10.1 112 126-239 36-147 (504)
82 PRK15331 chaperone protein Sic 99.4 2.2E-11 4.7E-16 87.5 11.9 108 125-235 34-141 (165)
83 PRK12373 NADH dehydrogenase su 99.3 3.1E-12 6.7E-17 104.1 7.1 98 4-115 64-171 (400)
84 PRK15363 pathogenicity island 99.3 5.2E-11 1.1E-15 85.1 12.4 95 91-194 39-133 (157)
85 PF13429 TPR_15: Tetratricopep 99.3 4.8E-12 1E-16 101.6 8.1 126 93-227 152-277 (280)
86 COG4783 Putative Zn-dependent 99.3 5.7E-11 1.2E-15 97.8 14.2 132 95-235 314-445 (484)
87 KOG1129 TPR repeat-containing 99.3 1.9E-11 4.2E-16 96.0 10.8 139 96-241 333-472 (478)
88 PF13432 TPR_16: Tetratricopep 99.3 1.3E-11 2.8E-16 76.5 7.8 65 132-198 1-65 (65)
89 KOG3060 Uncharacterized conser 99.3 9.6E-11 2.1E-15 89.0 13.4 135 93-236 92-229 (289)
90 TIGR02552 LcrH_SycD type III s 99.3 2E-11 4.4E-16 87.0 9.1 91 149-241 4-94 (135)
91 PF13512 TPR_18: Tetratricopep 99.3 2.5E-10 5.4E-15 80.3 13.7 116 126-241 8-142 (142)
92 PF09976 TPR_21: Tetratricopep 99.3 1.6E-10 3.6E-15 83.4 13.0 121 100-225 24-145 (145)
93 KOG4162 Predicted calmodulin-b 99.3 1.3E-10 2.8E-15 100.2 14.1 129 97-234 660-790 (799)
94 COG1729 Uncharacterized protei 99.3 1.4E-10 3E-15 89.6 13.0 112 129-240 142-257 (262)
95 KOG2076 RNA polymerase III tra 99.3 1.4E-10 3.1E-15 101.3 14.5 125 96-229 148-272 (895)
96 KOG0624 dsRNA-activated protei 99.3 3E-10 6.5E-15 90.0 14.5 147 93-241 112-266 (504)
97 COG4783 Putative Zn-dependent 99.2 1.5E-10 3.2E-15 95.4 12.7 114 126-241 304-417 (484)
98 KOG3060 Uncharacterized conser 99.2 2.7E-10 5.8E-15 86.6 13.1 135 100-243 65-199 (289)
99 PF14559 TPR_19: Tetratricopep 99.2 3.3E-11 7.1E-16 75.3 6.4 67 175-241 2-68 (68)
100 PF12688 TPR_5: Tetratrico pep 99.2 5.2E-10 1.1E-14 77.3 12.7 98 129-226 2-103 (120)
101 PF13371 TPR_9: Tetratricopept 99.2 9.8E-11 2.1E-15 74.2 7.6 71 171-241 2-72 (73)
102 COG5010 TadD Flp pilus assembl 99.2 7E-10 1.5E-14 84.8 12.9 120 95-223 108-227 (257)
103 KOG2002 TPR-containing nuclear 99.2 2E-10 4.3E-15 101.2 10.8 154 82-241 266-423 (1018)
104 KOG0550 Molecular chaperone (D 99.2 1.2E-10 2.6E-15 94.0 8.6 141 94-241 176-330 (486)
105 PRK10153 DNA-binding transcrip 99.2 8.4E-10 1.8E-14 95.1 14.3 122 102-233 357-488 (517)
106 COG2956 Predicted N-acetylgluc 99.2 4.9E-10 1.1E-14 88.0 11.1 133 92-231 112-247 (389)
107 KOG2002 TPR-containing nuclear 99.2 1.4E-10 3.1E-15 102.1 9.1 132 101-241 626-759 (1018)
108 PRK14574 hmsH outer membrane p 99.2 7.6E-10 1.6E-14 99.9 13.9 131 98-238 79-209 (822)
109 KOG2003 TPR repeat-containing 99.1 1.8E-10 3.9E-15 94.3 8.4 114 126-241 488-601 (840)
110 PRK14574 hmsH outer membrane p 99.1 1.3E-09 2.8E-14 98.5 14.5 135 91-234 38-172 (822)
111 PRK11906 transcriptional regul 99.1 2.1E-09 4.5E-14 89.0 14.5 123 102-233 273-407 (458)
112 KOG1129 TPR repeat-containing 99.1 6.4E-11 1.4E-15 93.2 5.2 140 95-241 264-438 (478)
113 COG2956 Predicted N-acetylgluc 99.1 1.6E-09 3.5E-14 85.2 12.8 134 95-232 149-283 (389)
114 PF13525 YfiO: Outer membrane 99.1 2E-09 4.3E-14 82.2 12.9 115 126-240 3-132 (203)
115 COG4785 NlpI Lipoprotein NlpI, 99.1 2.6E-10 5.7E-15 84.9 7.6 106 126-233 63-168 (297)
116 KOG0543 FKBP-type peptidyl-pro 99.1 1E-09 2.2E-14 88.8 11.6 134 94-229 215-357 (397)
117 PF09295 ChAPs: ChAPs (Chs5p-A 99.1 3.3E-09 7.2E-14 87.9 14.6 122 98-231 180-301 (395)
118 PF14559 TPR_19: Tetratricopep 99.1 3.1E-10 6.7E-15 70.8 6.6 67 138-206 1-67 (68)
119 KOG4555 TPR repeat-containing 99.1 4.5E-09 9.7E-14 72.1 12.4 104 126-231 41-148 (175)
120 KOG2003 TPR repeat-containing 99.1 2.7E-09 5.8E-14 87.6 13.1 138 93-239 496-633 (840)
121 COG3411 Ferredoxin [Energy pro 99.1 2.6E-10 5.6E-15 67.3 5.3 47 70-117 2-48 (64)
122 PF13525 YfiO: Outer membrane 99.1 6.1E-09 1.3E-13 79.5 14.2 142 94-239 12-182 (203)
123 PF13371 TPR_9: Tetratricopept 99.1 9.9E-10 2.1E-14 69.5 8.3 70 135-206 2-71 (73)
124 cd05804 StaR_like StaR_like; a 99.1 3.3E-09 7.2E-14 87.9 13.7 119 102-229 95-217 (355)
125 PRK10866 outer membrane biogen 99.1 5.8E-09 1.2E-13 81.7 13.6 114 127-240 31-166 (243)
126 KOG0545 Aryl-hydrocarbon recep 99.1 3E-09 6.5E-14 80.6 11.4 108 126-233 176-299 (329)
127 KOG4642 Chaperone-dependent E3 99.1 6.3E-10 1.4E-14 83.9 7.5 100 126-227 8-107 (284)
128 KOG1840 Kinesin light chain [C 99.1 1.3E-09 2.9E-14 92.7 10.3 135 94-228 248-397 (508)
129 KOG3196 NADH:ubiquinone oxidor 99.1 3.7E-10 7.9E-15 81.5 5.8 85 27-114 100-193 (233)
130 KOG0551 Hsp90 co-chaperone CNS 99.1 3.3E-09 7.1E-14 83.7 11.4 111 126-236 79-191 (390)
131 PF12895 Apc3: Anaphase-promot 99.0 6.8E-10 1.5E-14 72.4 6.6 83 100-190 2-84 (84)
132 cd05804 StaR_like StaR_like; a 99.0 3.8E-09 8.3E-14 87.5 12.4 129 94-232 50-182 (355)
133 PRK10866 outer membrane biogen 99.0 2.8E-08 6.1E-13 77.8 16.1 141 93-237 38-214 (243)
134 KOG2076 RNA polymerase III tra 99.0 7.2E-09 1.6E-13 91.0 13.9 111 126-238 137-247 (895)
135 TIGR02795 tol_pal_ybgF tol-pal 99.0 7.2E-09 1.6E-13 71.8 11.0 104 94-201 9-113 (119)
136 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 2.1E-09 4.5E-14 89.0 9.2 74 121-194 68-142 (453)
137 TIGR00540 hemY_coli hemY prote 99.0 2.1E-08 4.6E-13 84.8 15.4 130 94-231 91-220 (409)
138 KOG1173 Anaphase-promoting com 99.0 6.5E-09 1.4E-13 87.2 11.8 116 126-243 310-425 (611)
139 KOG0376 Serine-threonine phosp 99.0 6.7E-10 1.4E-14 91.6 5.4 110 129-240 5-114 (476)
140 KOG0495 HAT repeat protein [RN 99.0 1.3E-08 2.9E-13 86.8 13.1 150 81-241 579-728 (913)
141 CHL00033 ycf3 photosystem I as 99.0 5.2E-09 1.1E-13 77.5 8.9 104 138-241 9-115 (168)
142 KOG1128 Uncharacterized conser 99.0 1.6E-09 3.5E-14 93.1 6.8 111 128-240 485-595 (777)
143 PRK10747 putative protoheme IX 98.9 4.3E-08 9.2E-13 82.6 15.0 132 94-233 91-222 (398)
144 PRK10803 tol-pal system protei 98.9 2.1E-08 4.6E-13 79.2 12.3 98 99-200 155-253 (263)
145 PRK02603 photosystem I assembl 98.9 8.6E-09 1.9E-13 76.6 9.6 99 93-197 41-153 (172)
146 PF04733 Coatomer_E: Coatomer 98.9 2.3E-08 5E-13 80.3 12.4 134 96-238 140-276 (290)
147 cd00189 TPR Tetratricopeptide 98.9 1.6E-08 3.4E-13 66.2 9.7 91 97-196 10-100 (100)
148 PRK14720 transcript cleavage f 98.9 2.4E-08 5.3E-13 89.9 13.1 112 125-240 28-158 (906)
149 KOG1128 Uncharacterized conser 98.9 1E-08 2.2E-13 88.3 9.6 122 99-229 497-618 (777)
150 PF06552 TOM20_plant: Plant sp 98.9 1.6E-08 3.4E-13 73.6 9.0 93 144-238 7-120 (186)
151 PRK15331 chaperone protein Sic 98.9 4.6E-08 1E-12 70.5 10.7 99 91-199 41-139 (165)
152 KOG4234 TPR repeat-containing 98.9 3E-08 6.4E-13 73.2 9.9 114 93-210 101-214 (271)
153 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.8E-08 3.9E-13 83.5 9.5 69 157-227 70-141 (453)
154 PF13424 TPR_12: Tetratricopep 98.9 9.9E-09 2.1E-13 65.8 6.5 62 165-226 6-74 (78)
155 KOG1840 Kinesin light chain [C 98.9 2.4E-08 5.3E-13 85.1 10.6 135 94-228 206-355 (508)
156 PRK10747 putative protoheme IX 98.8 1.1E-07 2.3E-12 80.2 13.2 122 94-228 270-391 (398)
157 COG4235 Cytochrome c biogenesi 98.8 5.8E-08 1.3E-12 76.2 10.5 98 143-242 137-237 (287)
158 PF13424 TPR_12: Tetratricopep 98.8 2.8E-08 6.1E-13 63.7 7.4 69 126-194 3-76 (78)
159 PRK14720 transcript cleavage f 98.8 6.5E-08 1.4E-12 87.2 12.1 123 96-228 40-179 (906)
160 PF12569 NARP1: NMDA receptor- 98.8 4E-07 8.7E-12 78.4 15.7 58 98-162 15-72 (517)
161 KOG1174 Anaphase-promoting com 98.8 1.3E-07 2.8E-12 77.0 11.7 111 126-238 298-408 (564)
162 KOG4162 Predicted calmodulin-b 98.8 1.2E-07 2.5E-12 82.4 11.9 113 127-241 649-763 (799)
163 PF13512 TPR_18: Tetratricopep 98.8 2.1E-07 4.6E-12 65.6 11.1 105 92-200 15-135 (142)
164 KOG1156 N-terminal acetyltrans 98.7 1.3E-07 2.8E-12 80.7 11.3 127 93-228 47-173 (700)
165 KOG1156 N-terminal acetyltrans 98.7 7.1E-08 1.5E-12 82.3 9.5 129 102-239 22-150 (700)
166 KOG1127 TPR repeat-containing 98.7 1.9E-08 4.1E-13 89.3 5.9 136 94-236 499-634 (1238)
167 PF14938 SNAP: Soluble NSF att 98.7 2.3E-07 5E-12 74.6 11.7 137 96-234 84-232 (282)
168 PF12688 TPR_5: Tetratrico pep 98.7 5.5E-07 1.2E-11 62.3 11.9 93 94-192 8-103 (120)
169 COG4700 Uncharacterized protei 98.7 9.4E-07 2E-11 64.7 13.2 121 102-232 71-194 (251)
170 PF09976 TPR_21: Tetratricopep 98.7 8.6E-07 1.9E-11 63.9 12.9 114 126-240 9-126 (145)
171 KOG1174 Anaphase-promoting com 98.7 2.5E-07 5.3E-12 75.4 10.8 134 95-237 240-373 (564)
172 TIGR00540 hemY_coli hemY prote 98.7 7.7E-07 1.7E-11 75.4 14.1 113 127-241 83-196 (409)
173 PF04733 Coatomer_E: Coatomer 98.7 4.5E-08 9.7E-13 78.6 6.0 134 93-240 108-243 (290)
174 COG1729 Uncharacterized protei 98.6 7.9E-07 1.7E-11 69.1 11.7 107 94-204 148-255 (262)
175 PRK10153 DNA-binding transcrip 98.6 9.2E-07 2E-11 76.5 12.7 113 126-241 337-462 (517)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.1E-06 2.4E-11 73.1 12.4 102 136-242 177-278 (395)
177 KOG3785 Uncharacterized conser 98.6 4.4E-07 9.5E-12 72.7 9.3 141 94-241 64-228 (557)
178 KOG0495 HAT repeat protein [RN 98.6 2.1E-06 4.6E-11 73.8 13.9 126 102-237 633-758 (913)
179 KOG1127 TPR repeat-containing 98.6 2.8E-07 6.1E-12 82.1 8.8 126 96-228 535-660 (1238)
180 PF13428 TPR_14: Tetratricopep 98.6 1.5E-07 3.3E-12 53.1 4.7 41 165-205 2-42 (44)
181 COG3118 Thioredoxin domain-con 98.6 3.1E-05 6.6E-10 60.9 18.8 157 59-228 64-266 (304)
182 PRK11906 transcriptional regul 98.6 1.7E-06 3.8E-11 72.0 12.4 116 102-226 319-435 (458)
183 COG4105 ComL DNA uptake lipopr 98.5 1.2E-06 2.7E-11 67.4 10.7 150 86-239 33-208 (254)
184 COG4105 ComL DNA uptake lipopr 98.5 1.6E-06 3.4E-11 66.9 11.2 116 126-241 32-159 (254)
185 KOG4648 Uncharacterized conser 98.5 2.1E-07 4.5E-12 74.2 6.5 105 91-204 101-205 (536)
186 PF14938 SNAP: Soluble NSF att 98.5 7.3E-07 1.6E-11 71.7 9.1 134 95-230 43-187 (282)
187 PF13431 TPR_17: Tetratricopep 98.5 1.4E-07 3E-12 49.9 3.2 32 187-218 2-33 (34)
188 COG4785 NlpI Lipoprotein NlpI, 98.5 1E-06 2.2E-11 66.1 8.7 102 90-200 68-169 (297)
189 PF13428 TPR_14: Tetratricopep 98.5 5.6E-07 1.2E-11 50.7 5.6 42 199-240 2-43 (44)
190 PF12569 NARP1: NMDA receptor- 98.5 4.4E-06 9.5E-11 72.1 13.3 101 126-228 192-292 (517)
191 KOG1308 Hsp70-interacting prot 98.5 7.8E-08 1.7E-12 76.4 2.3 99 130-230 116-214 (377)
192 PF06552 TOM20_plant: Plant sp 98.4 2.8E-06 6.1E-11 62.0 9.8 94 103-205 7-121 (186)
193 KOG2376 Signal recognition par 98.4 4.4E-06 9.5E-11 71.0 11.6 127 96-235 21-147 (652)
194 PF00515 TPR_1: Tetratricopept 98.4 8.5E-07 1.8E-11 46.9 4.2 32 165-196 2-33 (34)
195 KOG4555 TPR repeat-containing 98.3 8.8E-06 1.9E-10 56.2 9.4 97 94-197 50-148 (175)
196 PF00515 TPR_1: Tetratricopept 98.3 1.7E-06 3.6E-11 45.8 4.8 33 199-231 2-34 (34)
197 COG3071 HemY Uncharacterized e 98.3 1.6E-05 3.6E-10 64.6 12.3 119 96-227 272-390 (400)
198 PF07719 TPR_2: Tetratricopept 98.3 1.9E-06 4.2E-11 45.4 4.6 31 200-230 3-33 (34)
199 COG4700 Uncharacterized protei 98.3 4.9E-05 1.1E-09 55.9 12.7 164 50-224 53-219 (251)
200 KOG1130 Predicted G-alpha GTPa 98.3 5.3E-06 1.2E-10 67.9 8.3 134 93-227 201-344 (639)
201 KOG3785 Uncharacterized conser 98.2 1.2E-05 2.6E-10 64.7 9.9 131 102-240 37-193 (557)
202 PF13431 TPR_17: Tetratricopep 98.2 9.4E-07 2E-11 46.7 2.5 34 150-185 1-34 (34)
203 KOG1130 Predicted G-alpha GTPa 98.2 8.3E-07 1.8E-11 72.4 3.1 126 102-228 170-305 (639)
204 KOG2376 Signal recognition par 98.2 3.1E-05 6.7E-10 66.0 12.2 116 98-226 57-203 (652)
205 KOG4340 Uncharacterized conser 98.2 1.8E-05 3.8E-10 62.4 9.9 127 100-235 23-181 (459)
206 PF07719 TPR_2: Tetratricopept 98.2 5.4E-06 1.2E-10 43.7 5.0 33 165-197 2-34 (34)
207 PLN03081 pentatricopeptide (PP 98.2 2.8E-05 6.1E-10 70.4 11.8 106 131-238 429-534 (697)
208 KOG4642 Chaperone-dependent E3 98.2 3.4E-05 7.3E-10 58.8 10.1 92 93-193 16-107 (284)
209 KOG0376 Serine-threonine phosp 98.1 3.4E-06 7.3E-11 70.2 4.9 107 96-211 13-119 (476)
210 PF03704 BTAD: Bacterial trans 98.1 0.00021 4.5E-09 51.5 13.7 96 131-226 9-124 (146)
211 KOG3081 Vesicle coat complex C 98.1 0.00021 4.5E-09 55.5 13.8 94 142-237 187-281 (299)
212 KOG3081 Vesicle coat complex C 98.1 8.7E-05 1.9E-09 57.5 11.7 130 93-238 114-247 (299)
213 PLN03218 maturation of RBCL 1; 98.1 8.2E-05 1.8E-09 69.8 13.8 118 98-224 590-710 (1060)
214 PF10300 DUF3808: Protein of u 98.1 0.0001 2.2E-09 63.5 13.2 120 102-228 248-377 (468)
215 KOG2796 Uncharacterized conser 98.1 5.9E-05 1.3E-09 58.4 10.1 126 100-231 190-319 (366)
216 PLN03218 maturation of RBCL 1; 98.1 0.00011 2.3E-09 69.0 13.7 120 98-226 518-642 (1060)
217 COG3071 HemY Uncharacterized e 98.1 0.00035 7.6E-09 57.0 14.7 122 98-227 95-216 (400)
218 PLN03077 Protein ECB2; Provisi 98.0 5.6E-05 1.2E-09 70.1 11.7 113 97-223 534-650 (857)
219 PF05843 Suf: Suppressor of fo 98.0 0.00018 3.9E-09 57.8 13.1 127 102-237 16-146 (280)
220 PLN03081 pentatricopeptide (PP 98.0 5.5E-05 1.2E-09 68.6 11.1 94 130-227 464-557 (697)
221 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00058 1.2E-08 51.6 14.9 94 137-230 139-234 (291)
222 COG0457 NrfG FOG: TPR repeat [ 98.0 0.00073 1.6E-08 51.0 15.3 131 97-236 69-206 (291)
223 COG2976 Uncharacterized protei 97.9 0.00058 1.2E-08 50.7 12.9 104 128-233 89-194 (207)
224 PLN03077 Protein ECB2; Provisi 97.9 0.00023 5E-09 66.1 13.1 132 97-236 564-695 (857)
225 KOG0551 Hsp90 co-chaperone CNS 97.9 3.2E-05 7E-10 61.6 5.9 98 93-195 87-184 (390)
226 PRK10941 hypothetical protein; 97.9 0.00015 3.3E-09 57.5 9.6 77 127-205 180-256 (269)
227 KOG1915 Cell cycle control pro 97.9 0.00073 1.6E-08 56.7 13.7 123 101-229 380-502 (677)
228 KOG2053 Mitochondrial inherita 97.9 0.00034 7.3E-09 62.5 12.4 123 100-232 22-144 (932)
229 PF13181 TPR_8: Tetratricopept 97.9 2.8E-05 6E-10 40.9 3.8 30 166-195 3-32 (34)
230 PF05843 Suf: Suppressor of fo 97.9 0.00046 1E-08 55.4 12.4 101 130-232 3-104 (280)
231 PRK04841 transcriptional regul 97.9 0.00057 1.2E-08 63.9 14.8 131 96-228 461-603 (903)
232 PF14853 Fis1_TPR_C: Fis1 C-te 97.8 5.5E-05 1.2E-09 44.1 4.8 36 167-202 4-39 (53)
233 PF13181 TPR_8: Tetratricopept 97.8 5.3E-05 1.2E-09 39.8 4.3 32 199-230 2-33 (34)
234 KOG4507 Uncharacterized conser 97.8 3.8E-05 8.2E-10 65.6 5.1 106 135-241 614-719 (886)
235 KOG2610 Uncharacterized conser 97.8 0.00066 1.4E-08 54.6 11.5 118 100-224 116-235 (491)
236 PF06999 Suc_Fer-like: Sucrase 97.7 0.00029 6.4E-09 54.9 9.3 75 39-114 131-216 (230)
237 KOG1070 rRNA processing protei 97.7 0.00081 1.8E-08 62.9 13.2 105 133-239 1535-1641(1710)
238 KOG2471 TPR repeat-containing 97.7 0.00011 2.5E-09 61.5 7.1 116 126-241 238-378 (696)
239 KOG1308 Hsp70-interacting prot 97.7 2.9E-05 6.3E-10 62.1 3.5 89 98-195 125-213 (377)
240 PRK04841 transcriptional regul 97.7 0.00078 1.7E-08 63.0 13.3 133 95-228 499-642 (903)
241 KOG0545 Aryl-hydrocarbon recep 97.7 0.00051 1.1E-08 52.8 9.7 109 91-201 182-301 (329)
242 PRK10941 hypothetical protein; 97.7 0.00096 2.1E-08 53.0 11.6 79 163-241 180-258 (269)
243 KOG4340 Uncharacterized conser 97.7 0.00027 5.8E-09 55.9 8.2 88 137-226 19-106 (459)
244 KOG1586 Protein required for f 97.7 0.0012 2.6E-08 50.5 11.2 140 94-235 81-232 (288)
245 PF13174 TPR_6: Tetratricopept 97.7 9.6E-05 2.1E-09 38.4 3.9 31 200-230 2-32 (33)
246 KOG1070 rRNA processing protei 97.7 0.00067 1.5E-08 63.4 11.3 131 96-235 1539-1671(1710)
247 KOG1941 Acetylcholine receptor 97.6 0.00015 3.3E-09 58.6 6.4 135 93-228 128-276 (518)
248 KOG2796 Uncharacterized conser 97.6 0.0009 2E-08 52.1 10.3 115 125-241 174-295 (366)
249 KOG2053 Mitochondrial inherita 97.6 0.00061 1.3E-08 61.0 9.8 93 137-231 18-110 (932)
250 KOG4507 Uncharacterized conser 97.6 0.0016 3.5E-08 56.0 11.9 116 83-206 602-718 (886)
251 KOG1310 WD40 repeat protein [G 97.6 0.00036 7.7E-09 59.2 7.9 103 127-231 373-478 (758)
252 KOG3824 Huntingtin interacting 97.6 0.00041 8.8E-09 55.1 7.7 80 126-207 114-193 (472)
253 PF13174 TPR_6: Tetratricopept 97.6 0.0002 4.4E-09 37.1 4.2 31 166-196 2-32 (33)
254 PF10300 DUF3808: Protein of u 97.5 0.0044 9.6E-08 53.5 14.4 141 96-239 197-346 (468)
255 KOG2396 HAT (Half-A-TPR) repea 97.5 0.0013 2.8E-08 55.5 10.6 93 145-239 88-181 (568)
256 PF13176 TPR_7: Tetratricopept 97.5 9.1E-05 2E-09 39.6 2.5 25 201-225 2-26 (36)
257 PF12968 DUF3856: Domain of Un 97.5 0.0049 1.1E-07 42.0 11.1 100 128-227 7-129 (144)
258 PF09613 HrpB1_HrpK: Bacterial 97.5 0.0049 1.1E-07 44.6 11.5 88 126-215 8-95 (160)
259 KOG3824 Huntingtin interacting 97.5 0.00067 1.5E-08 53.9 7.5 73 169-241 121-193 (472)
260 PF04184 ST7: ST7 protein; In 97.4 0.0059 1.3E-07 51.8 13.2 117 102-227 183-324 (539)
261 PF04184 ST7: ST7 protein; In 97.4 0.0053 1.1E-07 52.0 12.3 113 128-240 259-388 (539)
262 PF13281 DUF4071: Domain of un 97.4 0.011 2.4E-07 49.0 13.8 135 96-235 150-342 (374)
263 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0021 4.6E-08 37.4 7.0 42 199-240 2-43 (53)
264 PF03704 BTAD: Bacterial trans 97.3 0.0026 5.6E-08 45.7 9.2 63 128-192 62-124 (146)
265 KOG3364 Membrane protein invol 97.3 0.0043 9.4E-08 43.3 9.2 72 166-237 34-110 (149)
266 KOG3364 Membrane protein invol 97.3 0.0082 1.8E-07 41.9 10.4 83 126-209 30-116 (149)
267 KOG1915 Cell cycle control pro 97.3 0.0075 1.6E-07 50.9 12.0 104 126-231 71-174 (677)
268 smart00028 TPR Tetratricopepti 97.3 0.00058 1.3E-08 34.5 3.8 30 166-195 3-32 (34)
269 PF13176 TPR_7: Tetratricopept 97.3 0.00072 1.6E-08 36.0 4.2 25 167-191 2-26 (36)
270 COG4976 Predicted methyltransf 97.2 0.00061 1.3E-08 51.8 4.9 58 138-197 5-62 (287)
271 KOG4814 Uncharacterized conser 97.2 0.0071 1.5E-07 52.7 11.7 100 129-228 355-458 (872)
272 KOG1585 Protein required for f 97.2 0.0065 1.4E-07 46.9 10.2 130 95-225 39-177 (308)
273 COG4649 Uncharacterized protei 97.2 0.042 9E-07 40.4 13.3 136 100-241 71-209 (221)
274 smart00028 TPR Tetratricopepti 97.1 0.00092 2E-08 33.7 3.8 31 200-230 3-33 (34)
275 KOG2471 TPR repeat-containing 97.1 0.0012 2.6E-08 55.6 6.1 116 95-211 248-382 (696)
276 PF14561 TPR_20: Tetratricopep 97.1 0.0038 8.2E-08 40.9 7.1 65 147-213 7-73 (90)
277 PF04781 DUF627: Protein of un 97.1 0.011 2.4E-07 39.9 9.2 95 134-228 2-108 (111)
278 PF15015 NYD-SP12_N: Spermatog 97.1 0.01 2.3E-07 49.2 10.7 99 126-224 181-288 (569)
279 PF07293 DUF1450: Protein of u 97.0 0.0091 2E-07 37.6 7.8 70 42-118 4-76 (78)
280 TIGR02561 HrpB1_HrpK type III 97.0 0.024 5.2E-07 40.4 10.5 86 128-215 10-95 (153)
281 KOG1586 Protein required for f 97.0 0.018 3.9E-07 44.2 10.5 100 135-234 80-190 (288)
282 PF14561 TPR_20: Tetratricopep 97.0 0.011 2.3E-07 38.8 8.3 49 183-231 7-55 (90)
283 KOG1941 Acetylcholine receptor 96.9 0.0039 8.5E-08 50.8 7.2 100 129-228 123-236 (518)
284 PF09986 DUF2225: Uncharacteri 96.9 0.015 3.4E-07 44.6 10.1 96 137-232 86-199 (214)
285 COG4976 Predicted methyltransf 96.9 0.0016 3.6E-08 49.6 4.5 62 172-233 3-64 (287)
286 PF10602 RPN7: 26S proteasome 96.9 0.064 1.4E-06 40.0 12.9 102 126-227 34-142 (177)
287 COG3898 Uncharacterized membra 96.9 0.096 2.1E-06 43.4 14.4 124 98-230 131-295 (531)
288 PF09986 DUF2225: Uncharacteri 96.8 0.027 5.9E-07 43.3 11.0 107 99-205 89-207 (214)
289 PF07845 DUF1636: Protein of u 96.8 0.0057 1.2E-07 41.9 6.3 67 43-111 1-84 (116)
290 COG2976 Uncharacterized protei 96.7 0.028 6.2E-07 41.9 9.6 94 97-197 99-192 (207)
291 KOG1585 Protein required for f 96.7 0.041 8.9E-07 42.6 10.7 103 127-229 30-141 (308)
292 COG2912 Uncharacterized conser 96.7 0.0098 2.1E-07 46.7 7.5 68 168-235 185-252 (269)
293 KOG3617 WD40 and TPR repeat-co 96.7 0.022 4.8E-07 51.3 10.3 100 127-226 857-995 (1416)
294 COG0790 FOG: TPR repeat, SEL1 96.6 0.13 2.7E-06 41.5 14.0 116 102-229 92-222 (292)
295 KOG2047 mRNA splicing factor [ 96.6 0.14 3.1E-06 45.1 14.2 138 99-238 359-517 (835)
296 PF02259 FAT: FAT domain; Int 96.5 0.17 3.8E-06 41.7 14.3 115 126-240 144-300 (352)
297 KOG2047 mRNA splicing factor [ 96.5 0.054 1.2E-06 47.6 11.1 132 94-228 394-541 (835)
298 COG3118 Thioredoxin domain-con 96.5 0.12 2.5E-06 41.3 12.1 110 94-212 141-286 (304)
299 PF08631 SPO22: Meiosis protei 96.4 0.25 5.3E-06 39.7 14.5 131 99-229 5-152 (278)
300 KOG2396 HAT (Half-A-TPR) repea 96.4 0.045 9.7E-07 46.6 10.3 92 102-202 86-178 (568)
301 KOG2610 Uncharacterized conser 96.4 0.054 1.2E-06 44.0 10.2 102 132-235 107-212 (491)
302 PF13374 TPR_10: Tetratricopep 96.4 0.011 2.4E-07 32.1 4.6 29 165-193 3-31 (42)
303 KOG0530 Protein farnesyltransf 96.4 0.12 2.6E-06 40.5 11.4 105 130-236 79-185 (318)
304 COG2912 Uncharacterized conser 96.4 0.052 1.1E-06 42.8 9.6 78 127-206 180-257 (269)
305 KOG0530 Protein farnesyltransf 96.3 0.054 1.2E-06 42.4 9.5 98 140-239 55-154 (318)
306 PF09613 HrpB1_HrpK: Bacterial 96.3 0.057 1.2E-06 39.1 8.8 77 165-241 11-87 (160)
307 PF13281 DUF4071: Domain of un 96.2 0.092 2E-06 43.7 11.0 99 131-231 144-259 (374)
308 COG5191 Uncharacterized conser 96.2 0.0091 2E-07 47.7 4.9 87 151-239 96-183 (435)
309 KOG3617 WD40 and TPR repeat-co 96.2 0.045 9.7E-07 49.5 9.4 88 135-226 833-940 (1416)
310 PF08424 NRDE-2: NRDE-2, neces 96.2 0.097 2.1E-06 43.0 11.0 55 146-202 49-103 (321)
311 PF13374 TPR_10: Tetratricopep 96.2 0.013 2.8E-07 31.8 4.1 31 198-228 2-32 (42)
312 COG5469 Predicted metal-bindin 96.2 0.032 6.9E-07 38.6 6.6 74 38-111 15-104 (143)
313 PF02259 FAT: FAT domain; Int 96.1 0.22 4.9E-06 41.0 13.2 131 97-230 156-341 (352)
314 KOG0546 HSP90 co-chaperone CPR 96.0 0.0097 2.1E-07 48.3 3.9 109 130-238 224-349 (372)
315 KOG1550 Extracellular protein 95.9 0.25 5.4E-06 43.8 13.0 121 100-228 262-394 (552)
316 PF10579 Rapsyn_N: Rapsyn N-te 95.8 0.15 3.2E-06 32.2 7.9 65 127-191 5-70 (80)
317 KOG2300 Uncharacterized conser 95.8 0.45 9.7E-06 40.7 13.0 126 100-228 336-475 (629)
318 PRK15180 Vi polysaccharide bio 95.8 0.061 1.3E-06 45.7 8.0 102 132-235 327-428 (831)
319 PF12862 Apc5: Anaphase-promot 95.7 0.072 1.6E-06 35.1 6.8 55 175-229 9-72 (94)
320 TIGR02561 HrpB1_HrpK type III 95.7 0.075 1.6E-06 38.0 7.0 73 100-181 23-95 (153)
321 PRK13669 hypothetical protein; 95.6 0.13 2.9E-06 32.2 7.2 70 42-118 4-76 (78)
322 PF12862 Apc5: Anaphase-promot 95.6 0.094 2E-06 34.6 7.1 59 137-195 7-72 (94)
323 COG3914 Spy Predicted O-linked 95.5 0.29 6.2E-06 42.7 11.1 101 134-236 73-180 (620)
324 KOG4814 Uncharacterized conser 95.4 0.074 1.6E-06 46.7 7.5 75 163-237 353-433 (872)
325 KOG0529 Protein geranylgeranyl 95.4 0.5 1.1E-05 39.5 11.8 127 103-238 91-235 (421)
326 COG0790 FOG: TPR repeat, SEL1 95.3 1.1 2.5E-05 36.0 14.0 115 102-230 128-269 (292)
327 COG3629 DnrI DNA-binding trans 95.3 1.1 2.3E-05 35.9 13.2 79 144-226 137-215 (280)
328 PF08424 NRDE-2: NRDE-2, neces 95.3 0.64 1.4E-05 38.2 12.5 118 102-228 46-184 (321)
329 COG4759 Uncharacterized protei 95.3 0.07 1.5E-06 42.2 6.3 71 41-113 132-210 (316)
330 PF08631 SPO22: Meiosis protei 95.2 0.47 1E-05 38.1 11.3 97 139-235 4-124 (278)
331 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.054 1.2E-06 29.1 3.9 29 165-193 2-30 (38)
332 COG3898 Uncharacterized membra 95.2 0.53 1.2E-05 39.2 11.2 117 102-230 244-361 (531)
333 KOG1310 WD40 repeat protein [G 95.2 0.091 2E-06 45.2 7.1 87 102-197 389-478 (758)
334 PF10373 EST1_DNA_bind: Est1 D 95.1 0.12 2.6E-06 41.2 7.6 62 147-210 1-62 (278)
335 KOG4151 Myosin assembly protei 95.1 0.13 2.8E-06 46.1 8.2 107 130-236 55-165 (748)
336 PF07721 TPR_4: Tetratricopept 95.0 0.04 8.7E-07 26.7 2.9 22 200-221 3-24 (26)
337 PRK13184 pknD serine/threonine 94.8 0.14 3E-06 47.8 8.0 106 133-239 480-593 (932)
338 COG4941 Predicted RNA polymera 94.8 0.51 1.1E-05 38.5 10.0 133 102-241 271-408 (415)
339 PF07720 TPR_3: Tetratricopept 94.8 0.11 2.5E-06 27.5 4.5 21 166-186 3-23 (36)
340 PF07079 DUF1347: Protein of u 94.8 1.1 2.3E-05 38.2 12.2 99 125-224 376-521 (549)
341 PF10373 EST1_DNA_bind: Est1 D 94.7 0.12 2.6E-06 41.2 6.7 58 183-240 1-58 (278)
342 PF10516 SHNi-TPR: SHNi-TPR; 94.7 0.057 1.2E-06 29.0 3.2 30 129-158 2-31 (38)
343 PF10579 Rapsyn_N: Rapsyn N-te 94.6 0.5 1.1E-05 29.8 7.6 62 166-227 8-72 (80)
344 PF04910 Tcf25: Transcriptiona 94.4 0.67 1.5E-05 38.7 10.5 102 129-231 104-226 (360)
345 PF04910 Tcf25: Transcriptiona 94.4 2.1 4.5E-05 35.9 13.2 100 126-225 38-166 (360)
346 COG5191 Uncharacterized conser 94.3 0.07 1.5E-06 42.8 4.2 76 126-203 105-181 (435)
347 PF11207 DUF2989: Protein of u 94.2 0.42 9.2E-06 36.1 8.0 79 140-220 118-200 (203)
348 PF07720 TPR_3: Tetratricopept 94.1 0.27 5.8E-06 26.0 5.0 30 200-229 3-34 (36)
349 COG3629 DnrI DNA-binding trans 93.9 0.6 1.3E-05 37.3 8.7 66 126-193 151-216 (280)
350 PF07079 DUF1347: Protein of u 93.9 0.96 2.1E-05 38.5 10.1 58 130-190 464-521 (549)
351 PF11207 DUF2989: Protein of u 93.9 1.5 3.3E-05 33.2 10.3 59 181-241 123-187 (203)
352 PF07721 TPR_4: Tetratricopept 93.8 0.11 2.4E-06 25.2 2.9 24 165-188 2-25 (26)
353 PF04781 DUF627: Protein of un 93.6 0.54 1.2E-05 31.9 6.8 90 98-193 7-107 (111)
354 PF12968 DUF3856: Domain of Un 93.6 1.6 3.4E-05 30.1 9.0 93 101-193 23-129 (144)
355 KOG1550 Extracellular protein 93.5 2.6 5.7E-05 37.5 13.1 110 102-226 308-425 (552)
356 PF11817 Foie-gras_1: Foie gra 93.5 1.2 2.6E-05 35.1 9.8 60 165-224 179-244 (247)
357 COG3947 Response regulator con 93.3 2.3 5.1E-05 34.1 10.9 60 165-224 280-339 (361)
358 KOG2300 Uncharacterized conser 93.1 2.8 6E-05 36.1 11.7 130 93-229 373-516 (629)
359 KOG0529 Protein geranylgeranyl 92.9 3.9 8.4E-05 34.4 12.0 99 140-240 87-191 (421)
360 PF10602 RPN7: 26S proteasome 92.8 2.4 5.2E-05 31.5 10.1 66 163-228 35-103 (177)
361 KOG2581 26S proteasome regulat 92.2 2.2 4.8E-05 35.8 9.8 106 126-231 167-280 (493)
362 KOG1839 Uncharacterized protei 92.1 0.76 1.7E-05 43.8 7.9 101 126-228 971-1087(1236)
363 KOG1914 mRNA cleavage and poly 91.9 3.7 8E-05 35.9 11.1 73 111-193 10-82 (656)
364 TIGR03504 FimV_Cterm FimV C-te 91.9 0.39 8.4E-06 26.7 3.7 25 202-226 3-27 (44)
365 PF11846 DUF3366: Domain of un 91.6 1.1 2.4E-05 33.7 7.3 51 180-231 127-177 (193)
366 COG4455 ImpE Protein of avirul 91.6 0.88 1.9E-05 34.9 6.4 62 135-198 8-69 (273)
367 PRK13184 pknD serine/threonine 91.3 3.2 6.8E-05 39.2 10.9 125 101-234 489-627 (932)
368 KOG2041 WD40 repeat protein [G 91.3 2.7 5.7E-05 38.0 9.8 86 124-223 792-877 (1189)
369 KOG0546 HSP90 co-chaperone CPR 91.1 0.25 5.5E-06 40.4 3.3 81 131-213 278-358 (372)
370 PF11817 Foie-gras_1: Foie gra 90.9 3 6.5E-05 32.8 9.3 60 131-190 181-244 (247)
371 PRK15180 Vi polysaccharide bio 90.9 2.3 5E-05 36.7 8.8 95 138-234 299-393 (831)
372 PF10345 Cohesin_load: Cohesin 90.7 13 0.00027 33.7 15.4 128 103-234 37-177 (608)
373 KOG1914 mRNA cleavage and poly 90.6 1.8 4E-05 37.7 8.0 72 152-226 10-81 (656)
374 PRK11619 lytic murein transgly 90.2 12 0.00025 34.1 13.3 119 102-226 256-374 (644)
375 PF14863 Alkyl_sulf_dimr: Alky 89.6 1.8 4E-05 30.8 6.3 51 165-215 71-121 (141)
376 smart00386 HAT HAT (Half-A-TPR 89.4 1.4 3.1E-05 21.8 4.4 25 180-204 3-27 (33)
377 KOG2581 26S proteasome regulat 89.4 4.6 9.9E-05 34.0 9.2 133 99-237 221-359 (493)
378 COG3914 Spy Predicted O-linked 89.2 7.2 0.00016 34.5 10.6 102 97-207 77-185 (620)
379 COG4455 ImpE Protein of avirul 89.2 8.7 0.00019 29.7 11.1 33 130-162 37-69 (273)
380 COG3947 Response regulator con 89.1 2.5 5.5E-05 34.0 7.3 58 131-190 282-339 (361)
381 KOG0686 COP9 signalosome, subu 89.0 8.6 0.00019 32.5 10.5 98 126-225 148-256 (466)
382 cd02682 MIT_AAA_Arch MIT: doma 89.0 3.6 7.7E-05 25.8 6.5 31 127-157 5-35 (75)
383 COG2909 MalT ATP-dependent tra 89.0 14 0.00031 34.3 12.6 113 101-213 429-552 (894)
384 PF04053 Coatomer_WDAD: Coatom 89.0 5.9 0.00013 34.2 10.1 74 133-224 300-373 (443)
385 PF10255 Paf67: RNA polymerase 88.7 1.4 2.9E-05 37.3 5.9 61 131-192 125-192 (404)
386 TIGR03504 FimV_Cterm FimV C-te 88.6 1.3 2.7E-05 24.7 3.9 25 168-192 3-27 (44)
387 KOG0890 Protein kinase of the 88.4 9.9 0.00021 39.2 12.1 112 124-239 1666-1796(2382)
388 PF04053 Coatomer_WDAD: Coatom 88.3 5.4 0.00012 34.4 9.4 25 165-189 348-372 (443)
389 PF10255 Paf67: RNA polymerase 88.2 0.99 2.2E-05 38.1 4.9 59 167-226 125-192 (404)
390 smart00386 HAT HAT (Half-A-TPR 87.4 0.92 2E-05 22.5 2.9 29 212-240 1-29 (33)
391 KOG3616 Selective LIM binding 86.9 2.4 5.3E-05 38.5 6.6 77 133-221 770-847 (1636)
392 KOG1258 mRNA processing protei 86.8 20 0.00042 31.8 11.8 106 127-234 296-402 (577)
393 PF09205 DUF1955: Domain of un 86.8 5.6 0.00012 28.1 7.0 60 167-226 88-148 (161)
394 KOG3807 Predicted membrane pro 86.5 10 0.00023 31.2 9.5 90 136-229 192-306 (556)
395 PF10345 Cohesin_load: Cohesin 86.2 17 0.00037 32.8 11.9 93 130-222 303-428 (608)
396 COG2909 MalT ATP-dependent tra 85.9 16 0.00034 34.1 11.1 98 130-227 417-526 (894)
397 PF14863 Alkyl_sulf_dimr: Alky 85.9 2.8 6E-05 29.9 5.4 49 129-179 71-119 (141)
398 PF12854 PPR_1: PPR repeat 85.7 2.9 6.2E-05 21.5 4.2 24 199-222 8-31 (34)
399 KOG0985 Vesicle coat protein c 85.3 13 0.00028 35.4 10.4 59 126-191 1102-1160(1666)
400 KOG2041 WD40 repeat protein [G 85.0 5.4 0.00012 36.1 7.7 73 140-220 772-844 (1189)
401 KOG1258 mRNA processing protei 85.0 27 0.00059 31.0 13.4 111 99-218 309-420 (577)
402 COG5536 BET4 Protein prenyltra 84.7 10 0.00022 30.4 8.3 128 103-239 90-234 (328)
403 PF12854 PPR_1: PPR repeat 84.1 3.2 7E-05 21.3 3.9 25 165-189 8-32 (34)
404 cd02682 MIT_AAA_Arch MIT: doma 83.9 1.7 3.7E-05 27.3 3.2 37 165-201 7-50 (75)
405 KOG3783 Uncharacterized conser 83.9 18 0.00038 31.8 10.1 67 165-231 450-524 (546)
406 PF04212 MIT: MIT (microtubule 83.6 3.5 7.5E-05 25.2 4.6 30 128-157 5-34 (69)
407 PF11846 DUF3366: Domain of un 83.5 5 0.00011 30.2 6.3 51 143-196 126-176 (193)
408 PF15015 NYD-SP12_N: Spermatog 83.3 6.4 0.00014 33.4 7.1 60 131-192 231-290 (569)
409 cd02681 MIT_calpain7_1 MIT: do 83.3 3.2 7E-05 26.1 4.3 31 127-157 5-35 (76)
410 KOG3783 Uncharacterized conser 83.2 11 0.00024 33.0 8.7 85 104-195 250-334 (546)
411 KOG4014 Uncharacterized conser 83.1 18 0.00038 27.3 9.3 113 102-228 50-198 (248)
412 COG4649 Uncharacterized protei 81.8 19 0.00042 26.9 11.6 112 93-209 100-211 (221)
413 PRK15490 Vi polysaccharide bio 81.6 26 0.00056 31.4 10.5 57 128-188 42-98 (578)
414 PRK15490 Vi polysaccharide bio 81.4 22 0.00048 31.7 10.1 82 137-222 17-98 (578)
415 KOG3616 Selective LIM binding 81.3 11 0.00023 34.6 8.1 113 95-225 773-909 (1636)
416 cd02683 MIT_1 MIT: domain cont 81.3 4.2 9.1E-05 25.6 4.3 31 127-157 5-35 (77)
417 PHA02537 M terminase endonucle 80.5 2.7 5.9E-05 32.6 3.9 94 138-231 93-211 (230)
418 PF02064 MAS20: MAS20 protein 78.8 4.8 0.0001 27.9 4.3 28 169-196 68-95 (121)
419 PF12739 TRAPPC-Trs85: ER-Golg 78.2 35 0.00075 29.2 10.3 99 129-227 209-329 (414)
420 PF01535 PPR: PPR repeat; Int 78.1 4.6 9.9E-05 19.6 3.2 20 170-189 6-25 (31)
421 KOG1464 COP9 signalosome, subu 78.0 22 0.00048 28.6 8.1 120 102-225 42-172 (440)
422 COG4941 Predicted RNA polymera 77.1 21 0.00045 29.6 7.9 96 102-205 311-406 (415)
423 PF13226 DUF4034: Domain of un 76.9 35 0.00075 27.5 9.2 105 136-240 8-141 (277)
424 PF09670 Cas_Cas02710: CRISPR- 76.2 47 0.001 28.1 12.1 63 130-192 133-197 (379)
425 PHA02537 M terminase endonucle 76.0 35 0.00077 26.6 10.5 102 95-197 91-211 (230)
426 PF09797 NatB_MDM20: N-acetylt 75.7 38 0.00083 28.3 9.8 47 177-223 196-242 (365)
427 cd02680 MIT_calpain7_2 MIT: do 75.6 7 0.00015 24.5 4.0 28 130-157 8-35 (75)
428 cd02678 MIT_VPS4 MIT: domain c 74.3 8.7 0.00019 24.0 4.3 30 128-157 6-35 (75)
429 KOG1464 COP9 signalosome, subu 74.2 14 0.0003 29.7 6.1 53 140-192 39-93 (440)
430 KOG2422 Uncharacterized conser 73.6 68 0.0015 28.7 11.8 92 136-229 350-450 (665)
431 COG5107 RNA14 Pre-mRNA 3'-end 73.2 62 0.0013 28.1 12.3 118 109-236 30-156 (660)
432 cd02684 MIT_2 MIT: domain cont 73.2 9.9 0.00021 23.8 4.3 30 128-157 6-35 (75)
433 smart00671 SEL1 Sel1-like repe 72.6 10 0.00022 19.1 3.8 13 213-225 20-32 (36)
434 smart00745 MIT Microtubule Int 72.5 11 0.00023 23.6 4.4 29 128-156 8-36 (77)
435 TIGR00756 PPR pentatricopeptid 72.1 10 0.00022 18.6 3.9 24 168-191 4-27 (35)
436 PF08238 Sel1: Sel1 repeat; I 71.3 12 0.00027 19.2 4.0 13 214-226 24-36 (39)
437 COG1747 Uncharacterized N-term 71.0 57 0.0012 28.8 9.4 81 141-226 79-159 (711)
438 PF09205 DUF1955: Domain of un 70.4 36 0.00078 24.2 7.1 62 130-193 87-149 (161)
439 PF04212 MIT: MIT (microtubule 70.0 12 0.00027 22.7 4.2 17 208-224 15-31 (69)
440 COG0394 Wzb Protein-tyrosine-p 69.9 10 0.00022 26.9 4.3 36 40-78 3-38 (139)
441 KOG0276 Vesicle coat complex C 69.7 87 0.0019 28.3 10.4 27 165-191 667-693 (794)
442 PF06957 COPI_C: Coatomer (COP 69.6 54 0.0012 28.2 9.1 109 128-236 204-338 (422)
443 PF04348 LppC: LppC putative l 69.6 1.5 3.2E-05 38.8 0.0 101 126-227 22-127 (536)
444 KOG1839 Uncharacterized protei 69.4 34 0.00074 33.4 8.5 133 95-227 981-1128(1236)
445 cd02656 MIT MIT: domain contai 68.7 14 0.00031 22.9 4.4 27 130-156 8-34 (75)
446 KOG3807 Predicted membrane pro 68.5 68 0.0015 26.7 10.4 110 131-240 278-404 (556)
447 PF13041 PPR_2: PPR repeat fam 68.4 18 0.0004 20.1 6.2 27 166-192 5-31 (50)
448 PF07219 HemY_N: HemY protein 68.3 33 0.00073 23.0 6.9 48 166-213 61-108 (108)
449 KOG2114 Vacuolar assembly/sort 68.2 44 0.00096 31.2 8.6 33 125-157 365-397 (933)
450 cd00280 TRFH Telomeric Repeat 68.0 49 0.0011 24.9 8.6 69 102-174 84-154 (200)
451 PF07219 HemY_N: HemY protein 68.0 34 0.00074 23.0 6.6 52 126-179 57-108 (108)
452 KOG2561 Adaptor protein NUB1, 67.7 39 0.00084 29.1 7.7 99 127-226 162-295 (568)
453 PF13041 PPR_2: PPR repeat fam 67.1 20 0.00043 19.9 5.3 31 128-158 3-33 (50)
454 cd02681 MIT_calpain7_1 MIT: do 66.9 14 0.00031 23.2 4.0 24 168-191 10-33 (76)
455 cd02677 MIT_SNX15 MIT: domain 66.8 16 0.00034 22.9 4.2 29 129-157 7-35 (75)
456 cd02679 MIT_spastin MIT: domai 66.2 14 0.0003 23.5 3.9 28 129-156 9-36 (79)
457 KOG0687 26S proteasome regulat 65.7 77 0.0017 26.3 11.9 102 126-227 102-210 (393)
458 KOG4056 Translocase of outer m 65.6 14 0.00031 26.1 4.1 36 203-238 86-121 (143)
459 COG5187 RPN7 26S proteasome re 65.4 74 0.0016 26.0 10.8 103 126-228 113-222 (412)
460 KOG2422 Uncharacterized conser 64.8 71 0.0015 28.6 8.9 95 141-235 251-380 (665)
461 cd02683 MIT_1 MIT: domain cont 64.6 15 0.00032 23.2 3.8 25 168-192 10-34 (77)
462 KOG2758 Translation initiation 64.1 83 0.0018 26.1 8.9 82 105-193 113-196 (432)
463 COG5107 RNA14 Pre-mRNA 3'-end 63.9 1E+02 0.0022 27.0 9.8 50 140-191 444-493 (660)
464 PF02058 Guanylin: Guanylin pr 63.4 4.6 0.0001 26.1 1.3 57 2-66 7-71 (89)
465 PF13812 PPR_3: Pentatricopept 63.4 17 0.00037 17.9 4.3 25 167-191 4-28 (34)
466 PF14689 SPOB_a: Sensor_kinase 63.0 25 0.00055 21.0 4.5 36 191-226 16-51 (62)
467 PF02184 HAT: HAT (Half-A-TPR) 62.7 20 0.00043 18.4 3.6 16 180-195 3-18 (32)
468 PF05053 Menin: Menin; InterP 62.6 1.2E+02 0.0025 27.2 10.1 89 126-226 255-346 (618)
469 KOG0276 Vesicle coat complex C 61.8 32 0.00068 30.9 6.4 69 148-227 627-695 (794)
470 PF10952 DUF2753: Protein of u 61.5 48 0.001 23.2 6.0 66 131-196 4-86 (140)
471 COG3107 LppC Putative lipoprot 61.2 1.2E+02 0.0026 27.0 11.3 98 128-229 63-164 (604)
472 TIGR00985 3a0801s04tom mitocho 60.6 18 0.00039 26.1 4.0 37 203-239 95-132 (148)
473 PF02064 MAS20: MAS20 protein 60.2 23 0.0005 24.6 4.4 32 131-162 66-97 (121)
474 KOG1538 Uncharacterized conser 59.4 43 0.00094 30.4 6.8 53 171-226 780-832 (1081)
475 PF12753 Nro1: Nuclear pore co 58.5 20 0.00043 30.2 4.5 44 180-225 334-389 (404)
476 PRK10126 tyrosine phosphatase; 58.2 15 0.00033 26.3 3.4 34 41-78 4-37 (147)
477 KOG0890 Protein kinase of the 57.8 1.9E+02 0.0041 30.8 11.4 64 163-228 1669-1732(2382)
478 PRK11391 etp phosphotyrosine-p 56.9 11 0.00024 26.9 2.6 34 41-78 4-37 (144)
479 cd02679 MIT_spastin MIT: domai 56.5 23 0.0005 22.5 3.6 16 179-194 4-19 (79)
480 KOG0985 Vesicle coat protein c 56.3 2.1E+02 0.0045 28.1 13.0 58 165-227 1105-1162(1666)
481 TIGR02689 ars_reduc_gluta arse 54.5 15 0.00032 25.5 2.8 36 41-79 2-37 (126)
482 TIGR02710 CRISPR-associated pr 53.5 1.4E+02 0.003 25.4 11.2 56 98-153 141-196 (380)
483 PF09670 Cas_Cas02710: CRISPR- 52.8 1E+02 0.0022 26.1 8.0 62 166-227 133-198 (379)
484 PF15469 Sec5: Exocyst complex 52.6 57 0.0012 24.2 5.9 27 212-238 153-179 (182)
485 KOG3217 Protein tyrosine phosp 52.3 28 0.0006 25.0 3.8 39 39-77 6-46 (159)
486 COG4259 Uncharacterized protei 51.9 70 0.0015 21.4 5.8 35 165-199 73-107 (121)
487 COG5187 RPN7 26S proteasome re 51.7 1.3E+02 0.0029 24.6 8.8 66 163-228 114-185 (412)
488 smart00745 MIT Microtubule Int 51.7 36 0.00079 21.1 4.1 14 217-230 34-47 (77)
489 KOG4563 Cell cycle-regulated h 51.6 46 0.001 27.8 5.5 60 126-185 39-104 (400)
490 PF12583 TPPII_N: Tripeptidyl 51.4 84 0.0018 22.2 6.2 36 127-162 75-110 (139)
491 cd02656 MIT MIT: domain contai 51.2 27 0.00058 21.6 3.4 23 170-192 12-34 (75)
492 PF13213 DUF4021: Protein of u 51.1 6.8 0.00015 21.5 0.5 18 1-18 26-43 (46)
493 PF09797 NatB_MDM20: N-acetylt 51.1 1.5E+02 0.0032 24.9 9.5 47 141-189 196-242 (365)
494 COG5159 RPN6 26S proteasome re 50.8 1.4E+02 0.003 24.5 10.5 92 132-225 7-152 (421)
495 PF05053 Menin: Menin; InterP 50.3 68 0.0015 28.6 6.5 65 126-192 275-346 (618)
496 smart00299 CLH Clathrin heavy 49.1 88 0.0019 21.7 9.3 80 140-222 19-106 (140)
497 KOG0292 Vesicle coat complex C 48.6 2.5E+02 0.0055 26.9 10.5 110 94-204 998-1124(1202)
498 COG2015 Alkyl sulfatase and re 48.3 1.3E+02 0.0028 26.5 7.7 51 167-217 455-505 (655)
499 KOG4151 Myosin assembly protei 48.2 39 0.00085 31.1 5.0 67 131-199 94-162 (748)
500 PF04190 DUF410: Protein of un 47.5 1.4E+02 0.0031 23.7 9.9 27 196-222 88-114 (260)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.80 E-value=2.4e-18 Score=124.14 Aligned_cols=123 Identities=14% Similarity=0.144 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHH
Q 026145 107 SEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALED 186 (243)
Q Consensus 107 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~ 186 (243)
...+++++..+| .. ++.+|..+...|++++|+..|++++..+|.+. .+|.++|.++..+|++++|+..
T Consensus 13 ~~~~~~al~~~p-------~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~ 80 (144)
T PRK15359 13 EDILKQLLSVDP-------ET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINF 80 (144)
T ss_pred HHHHHHHHHcCH-------HH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHH
Confidence 456788887776 32 66789999999999999999999999999987 9999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 187 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|+++++++|+++.+++++|.++..+|++++|+..|.+++.++|+++..+..++.+
T Consensus 81 y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 81 YGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998776643
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.80 E-value=1.3e-18 Score=134.34 Aligned_cols=115 Identities=29% Similarity=0.468 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC 203 (243)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 203 (243)
....+..+...|+.+++.++|.+|+..|.+||+++|.++ ..|.+++.+|.++|.|+.|+++++.+|.++|.+.++|.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~R 154 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGR 154 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHH
Confidence 346777899999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
||.+|..+|++++|++.|+++|.++|++...+..+..
T Consensus 155 LG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 155 LGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999999999999999999999988877653
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=5.3e-17 Score=136.01 Aligned_cols=137 Identities=18% Similarity=0.123 Sum_probs=103.7
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
+..|...|..+-|+..|++++...| .-..++.++|+.+-..|+..+|+.+|.+++.+.|+++ ++.+|+|.+
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~~P-------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--dam~NLgni 363 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALELQP-------NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--DAMNNLGNI 363 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCC-------CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--HHHHHHHHH
Confidence 5788888999999999999999988 6677777777777777777777777777777777766 777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+..+|.+++|...|.++++..|..+.++.+||.+|..+|++++|+..|++++++.|...+++.++.
T Consensus 364 ~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmG 429 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMG 429 (966)
T ss_pred HHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcc
Confidence 777777777777777777777777777777777777777777777777777777776666665544
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-17 Score=140.01 Aligned_cols=138 Identities=19% Similarity=0.195 Sum_probs=109.9
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..|...|..+.|..+|..++...| .-+.+..++|.+|.++|++++|+..|++++++.|.. ++++.|+|.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p-------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~f--Ada~~NmGn 430 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFP-------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTF--ADALSNMGN 430 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhCh-------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchH--HHHHHhcch
Confidence 35666677777888888888777777 667777788888888888888888888888888874 488888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+|..+|+.+.|++.|.+|+.++|..++++.+||.+|...|+..+|+..|+.++++.||.++++-++.
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 8888888888888888888888888888888888888888888888888888888888888776654
No 5
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.73 E-value=1.5e-16 Score=120.66 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=117.5
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH-HHcC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR-LTMG 178 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~-~~~~ 178 (243)
.++.++++..+++.+..+| .++..|+.+|.++...|++++|+..|++++.++|+++ .++.++|.++ ...|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P-------~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~--~~~~~lA~aL~~~~g 122 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP-------QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA--ELYAALATVLYYQAG 122 (198)
T ss_pred chhHHHHHHHHHHHHHHCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcC
Confidence 4578899999999999998 8899999999999999999999999999999999988 9999999975 6778
Q ss_pred C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 179 N--FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 179 ~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
+ +++|...++++++.+|+++.+++.+|..+...|++++|+..++++++++|.+..-.
T Consensus 123 ~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 123 QHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 7 59999999999999999999999999999999999999999999999988655433
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.73 E-value=1.9e-16 Score=113.13 Aligned_cols=124 Identities=15% Similarity=0.218 Sum_probs=114.9
Q ss_pred HHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHH
Q 026145 108 EILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDV 187 (243)
Q Consensus 108 ~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~ 187 (243)
+.+++++..+| .+....+.+|..+...|++++|+..+++++..+|.++ .++.++|.++..+|++++|+..+
T Consensus 4 ~~~~~~l~~~p-------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 4 ATLKDLLGLDS-------EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hhHHHHHcCCh-------hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888887 7778899999999999999999999999999999987 99999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 188 REALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 188 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+++++.+|.++..++.+|.++...|++++|+..++++++++|++........+
T Consensus 75 ~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 127 (135)
T TIGR02552 75 ALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKER 127 (135)
T ss_pred HHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999887655544
No 7
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.71 E-value=1.7e-16 Score=118.41 Aligned_cols=138 Identities=20% Similarity=0.130 Sum_probs=128.0
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|.-|...|++..|.+.+++++..+| ....+|..+|.+|.+.|+.+.|-+.|++|+.++|++. ++++|.|..
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DP-------s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--dVLNNYG~F 112 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDP-------SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--DVLNNYGAF 112 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--chhhhhhHH
Confidence 5567888899999999999999999 8999999999999999999999999999999999998 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 174 RLTMGNFSAALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++.+|+|++|...|++|+. +| ..+..+.|+|.|-.+.|+.+.|.+.|+++++++|+++.....+++.
T Consensus 113 LC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 113 LCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred HHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 9999999999999999996 55 4467999999999999999999999999999999998887666553
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.71 E-value=9.1e-16 Score=123.84 Aligned_cols=128 Identities=23% Similarity=0.173 Sum_probs=115.8
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
+..+.++..+.+++...+ ......+..++.+|.++...|++++|+..|+++++.+|+++ .+|+++|.++..+|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~---~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 40 LQQEVILARLNQILASRD---LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA--DAYNYLGIYLTQAGNF 114 (296)
T ss_pred hHHHHHHHHHHHHHcccc---CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCH
Confidence 367788888888885332 22235678899999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
++|+..|+++++++|++..++.++|.++...|++++|++.++++++++|+++.
T Consensus 115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 99999999999999999999999999999999999999999999999999873
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=2.6e-16 Score=139.26 Aligned_cols=139 Identities=17% Similarity=0.187 Sum_probs=122.7
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|..+...|++++|+..+++++...| .....+..+|.++...|++++|+..|+++++.+|+++ .+++.+|.+
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~P-------~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~--~~~~~lg~~ 408 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDP-------RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP--DIYYHRAQL 408 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Confidence 4555667899999999999998887 7778888999999999999999999999999999877 899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++.+|++++|+..|++++.++|++..++.++|.++..+|++++|+..|++++..+|+++.++..++.+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGEL 476 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888776654
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.8e-17 Score=136.47 Aligned_cols=142 Identities=15% Similarity=0.120 Sum_probs=116.3
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..|...++.+.|++.|++++..+| ..+.++-.+|..+....+++.|...|++||..+|++- .+|+.+|+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp-------~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--nAwYGlG~ 497 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDP-------RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--NAWYGLGT 497 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCC-------ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--HHHHhhhh
Confidence 35666667788899999998888887 7777788888888888888888888888888888876 88888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY 243 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~ 243 (243)
+|+++++++.|+-.|++|++++|.+......+|..+.++|+.++|++.|++|+.++|.++-.....+++.|
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888877777766643
No 11
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.66 E-value=4.1e-15 Score=106.06 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
......+.+|..++..|++++|...|+-+..++|.+. ..|+++|.++..+|+|++|+..|.+++.++|+++.+++++|
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 6777899999999999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.|+...|+.+.|.+.|+.++....++
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999886433
No 12
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-15 Score=123.95 Aligned_cols=139 Identities=15% Similarity=0.083 Sum_probs=129.4
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|..|.-.++.++|+.+|+++++.+| ....+|..+|..|+...+...|++.|++|++++|.|- .+|+.+|++
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp-------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy--RAWYGLGQa 407 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNP-------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY--RAWYGLGQA 407 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCc-------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH--HHHhhhhHH
Confidence 4566666699999999999999999 8999999999999999999999999999999999987 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|-.++-..=|+-+|++|+...|+++..|..+|.||.++++.++|+..|.+++.....+..++..++++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987777777666654
No 13
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.65 E-value=2.9e-15 Score=123.64 Aligned_cols=110 Identities=28% Similarity=0.524 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
.+...|..++..|+|++|+..|.+++.++|++. .+|.++|.++..+|++++|+..+++++.++|+++.+++++|.++.
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 366789999999999999999999999999987 999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 210 AMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.+|++++|+..|++++.++|+++.+...++++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999988777654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=6.2e-15 Score=130.58 Aligned_cols=135 Identities=24% Similarity=0.264 Sum_probs=122.7
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
+.+++|.+.|+.++.... .....+.++..+|..+...|++++|+..|++++.++|++. .+|..+|.++..+|++
T Consensus 308 ~~y~~A~~~~~~al~~~~----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~ 381 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGK----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYIKRASMNLELGDP 381 (615)
T ss_pred hhHHHHHHHHHHHHhcCC----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHCCCH
Confidence 478899999999986531 1127778899999999999999999999999999999976 9999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++|+..++++++.+|+++.+++.+|.++...|++++|+..|++++.++|++..++..++.+
T Consensus 382 ~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 382 DKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887766544
No 15
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.5e-15 Score=122.04 Aligned_cols=146 Identities=25% Similarity=0.385 Sum_probs=124.1
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcch-------------------hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAA-------------------KNLEALALRKRAEAEFEKANFSEADGFLSQA 154 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~-------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 154 (243)
|..|...++++.++..|.+++.....+... .+..+......|+.+++.|+|..|+..|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 456666678888888887766444211100 1133455667799999999999999999999
Q ss_pred hccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 155 IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 155 l~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
|..+|+++ .+|.|+|.||.+++.+..|+.+.+++++++|++..+|+..|.++..+.+|++|.+.|+++++.+|++.++
T Consensus 385 Ikr~P~Da--~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~ 462 (539)
T KOG0548|consen 385 IKRDPEDA--RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA 462 (539)
T ss_pred HhcCCchh--HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence 99999988 9999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhc
Q 026145 235 KSFKVSS 241 (243)
Q Consensus 235 ~~~~a~i 241 (243)
...+.++
T Consensus 463 ~~~~~rc 469 (539)
T KOG0548|consen 463 IDGYRRC 469 (539)
T ss_pred HHHHHHH
Confidence 8776654
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.63 E-value=1.2e-14 Score=132.78 Aligned_cols=129 Identities=19% Similarity=0.071 Sum_probs=117.4
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
|++++|...+++++...| . +..+..+|.++.+.|++++|+..|.+++.++|+++ .++.++|.++...|++
T Consensus 590 Gr~~eAl~~~~~AL~l~P-------~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~--~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 590 GQPELALNDLTRSLNIAP-------S-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS--NYQAALGYALWDSGDI 659 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-------C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCH
Confidence 789999999999888886 4 67889999999999999999999999999999987 9999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
++|+..++++++++|+++.+++++|.++..+|++++|+..|+++++++|++........
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g 718 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTP 718 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999998877664433
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.62 E-value=8.7e-15 Score=127.83 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=114.4
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK---------ANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
+.++|.+.+++++..+| ..+.++..+|.++... +++++|+..++++++++|+++ .++..+|.
T Consensus 276 ~~~~A~~~~~~Al~ldP-------~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~--~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNMSP-------NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP--QALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--HHHHHHHH
Confidence 45688999999999998 7788888888876643 448999999999999999987 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|+++.....
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~ 411 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGIT 411 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999998765433
No 18
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=5e-15 Score=124.94 Aligned_cols=139 Identities=12% Similarity=0.095 Sum_probs=130.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|.-+.....+|+|...|+.++..+| +...+|+.+|.+|.++++++.|.-.|++|++++|.+. .....+|..
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~-------rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns--vi~~~~g~~ 532 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDP-------RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS--VILCHIGRI 532 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCc-------hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch--hHHhhhhHH
Confidence 3333444589999999999999999 9999999999999999999999999999999999987 888999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|...+++..++-|++..++.++.+|
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888776
No 19
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=2e-14 Score=125.51 Aligned_cols=133 Identities=16% Similarity=0.048 Sum_probs=120.7
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.+++++|...+++++..+| .++.++..+|.++...|++++|+..|+++++++|+++ .+++.+|.++..+|+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDH-------NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQ 387 (553)
T ss_pred chHHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCC
Confidence 3468999999999999998 8889999999999999999999999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCchhhhhhhhhc
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID-PSIRRSKSFKVSS 241 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~a~i 241 (243)
+++|+..++++++++|.++.+++.++.+++..|++++|+..+++++..+ |+++.++.+++.+
T Consensus 388 ~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~ 450 (553)
T PRK12370 388 LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF 450 (553)
T ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 9999999999999999998887778878888999999999999999875 7788777665543
No 20
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.60 E-value=3.1e-14 Score=102.69 Aligned_cols=109 Identities=15% Similarity=0.016 Sum_probs=102.0
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|..+...|++++|...|+.++...| ....+++.+|.++...|++++|+..|.+++.++|+++ .+++++|.+
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P-------~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~ 101 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQP-------WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP--EPVYQTGVC 101 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--HHHHHHHHH
Confidence 4455678899999999999999998 8899999999999999999999999999999999988 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 211 (243)
+..+|++++|+..|++++++.|+++..+.+++.+...+
T Consensus 102 l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887654
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.60 E-value=4.8e-14 Score=109.02 Aligned_cols=139 Identities=21% Similarity=0.161 Sum_probs=116.8
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
+..+...|++++|.+.+++++...| .....+..+|.++...|++++|+..|+++++..|.+. .++.++|.+
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p-------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~ 108 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDP-------DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG--DVLNNYGTF 108 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence 4455667899999999999998877 6678889999999999999999999999999999876 888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 174 RLTMGNFSAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|+++.++..++.+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 888899999988888888743 44567788888888888888888888888888888887777666554
No 22
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=99.57 E-value=2.3e-14 Score=93.35 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEccCCccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEe-cCC-eEEEecCCHhHHHHHHHHHhc
Q 026145 42 ELRVCTNRTCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVAL-PDG-VVVGHCGTPARASEILMVLCG 115 (243)
Q Consensus 42 ~i~vC~~~~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~-~~g-~~~~~~~~~~~a~~~l~~~l~ 115 (243)
+|+||.+++|.+.|+++++++|++ .|+ ++.+..+||+|.|..+|.+.+. |++ ..|.++ +++++.++++.++.
T Consensus 2 ~I~Vc~gT~ciAaGA~~V~~al~~ei~~~gl-~v~v~~tGC~G~C~~ePlV~V~~p~g~v~Y~~V-~~edv~~Iv~~~~~ 79 (92)
T cd03063 2 RIYVPRDAAALALGADEVAEAIEAEAAARGL-AATIVRNGSRGMYWLEPLVEVETPGGRVAYGPV-TPADVASLLDAGAL 79 (92)
T ss_pred EEEEeCChhhhhhCHHHHHHHHHHHHHHcCC-eEEEEEecCceecCCCCEEEEEeCCCcEEEEeC-CHHHHHHHHHHHhh
Confidence 599999999999999999999998 466 7899999999999999999996 888 899999 99999999998875
Q ss_pred C
Q 026145 116 I 116 (243)
Q Consensus 116 ~ 116 (243)
.
T Consensus 80 ~ 80 (92)
T cd03063 80 E 80 (92)
T ss_pred c
Confidence 3
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.1e-14 Score=116.54 Aligned_cols=141 Identities=17% Similarity=0.138 Sum_probs=131.8
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|+.+.-.|++-.+.+.|+.++...| .....|..+|..|....+..+-...|.+|..++|+++ .+|+.+|+
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~-------~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--dvYyHRgQ 402 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDP-------AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP--DVYYHRGQ 402 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCc-------ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC--chhHhHHH
Confidence 57788888899999999999999987 5555688999999999999999999999999999998 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSST 242 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~ 242 (243)
+++-+++|++|+..|++++.++|++..++.+++.+++++++++++...|+.+..--|+.++++.+.+.|.
T Consensus 403 m~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiL 472 (606)
T KOG0547|consen 403 MRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEIL 472 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988763
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=7.7e-14 Score=107.85 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=122.8
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+..+...|++++|.+.+++++...| .....+..+|..+...|++++|+..|.+++...+.......+.++|.
T Consensus 71 la~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 71 LALYYQQLGELEKAEDSFRRALTLNP-------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 35566778899999999999998877 56678899999999999999999999999986422112378899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
++...|++++|...+++++..+|+++.++..+|.++...|++++|...+++++...|+++..+...+.
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 211 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIR 211 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887776655443
No 25
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.56 E-value=1.7e-13 Score=95.40 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYIC 203 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~ 203 (243)
+..++.+|..+...|++++|+..|.+++..+|++. ...+++.+|.++...|++++|+..+++++..+|++ +.+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 35789999999999999999999999999998763 23688999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+|.++..+|++++|+..+.+++...|+++.+.....+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 118 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQKR 118 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 9999999999999999999999999999888776554
No 26
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=99.55 E-value=7.8e-15 Score=105.25 Aligned_cols=96 Identities=31% Similarity=0.558 Sum_probs=75.9
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK 74 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~ 74 (243)
.+|++...+++|.++ ++++. +.+.++++|.||++++|..+|+.++++++++ +|+ +.+.+.
T Consensus 40 ~l~i~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~l~i~~g~~~~dg~~~l~ 108 (145)
T PF01257_consen 40 ALGIPPAEVYGVATF------YSMFR-----LEPKGKHHIRVCTGTSCHLRGAEELLEALEEELGIKPGETTEDGKFTLE 108 (145)
T ss_dssp HHTS-HHHHHHHHHH------SSSS------SSS--SEEEEEE-SHHHHTTTHHHHHHHHHHHHCTSCCCCSTTTTEEEE
T ss_pred HHCCCHHHHHHHHHH------HHHcc-----cCCCCCcEEEeCCCchHHhCCCHHHHHHHHHHhCCcccccCCCceEEEE
Confidence 367777888888555 33333 3444889999999999999999999999998 331 379999
Q ss_pred eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145 75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL 113 (243)
Q Consensus 75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~ 113 (243)
.++|+|.|..+|++.+ ++.+|.++ +++++.++++++
T Consensus 109 ~~~ClG~C~~aP~v~V--~~~~y~~v-t~e~v~~il~~l 144 (145)
T PF01257_consen 109 ETGCLGACDQAPVVMV--DGEWYGNV-TPEKVDEILEEL 144 (145)
T ss_dssp EESSSSSGGGSSEEEE--CCCEEESS-SCCHHHHHHHHH
T ss_pred ECCCccccCCCCEEEE--CCEEECCC-CHHHHHHHHHhc
Confidence 9999999999999988 88899999 999999998764
No 27
>PRK07539 NADH dehydrogenase subunit E; Validated
Probab=99.54 E-value=1.6e-14 Score=104.68 Aligned_cols=95 Identities=26% Similarity=0.428 Sum_probs=77.7
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK 74 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~ 74 (243)
.+|++...|++|.++ +++.+ +.+.++++|.||++++|..+|+.++++++++ +++ +.+.+.
T Consensus 49 ~l~v~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~l~~~l~~~L~i~~g~tt~dg~~~l~ 117 (154)
T PRK07539 49 YLGMPAIDVEEVATF------YSMIF-----RQPVGRHVIQVCTSTPCWLRGGEAILAALKKKLGIKPGETTADGRFTLL 117 (154)
T ss_pred HhCcCHHHHHHHHHH------HhhhC-----cCCCCCEEEEEcCCchHHHCCHHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence 367788888888555 33333 3344889999999999999999999999998 342 258999
Q ss_pred eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145 75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV 112 (243)
Q Consensus 75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~ 112 (243)
.++|+|.|+.+|++.+ ++.+|.++ +++++.++++.
T Consensus 118 ~~~ClG~C~~gPvv~V--~~~~y~~v-t~e~v~~il~~ 152 (154)
T PRK07539 118 EVECLGACDNAPVVMI--NDDTYEDL-TPEKIDELLDE 152 (154)
T ss_pred EccccCccCCCCEEEE--CCEEeCCC-CHHHHHHHHHh
Confidence 9999999999999988 47899888 99999988865
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=2.2e-13 Score=124.57 Aligned_cols=136 Identities=15% Similarity=0.056 Sum_probs=116.2
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...|+++.|...+++++...| .....+..++......|++++|+..|+++++.+|+ . .++.++|.++.
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P-------~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~--~a~~~LA~~l~ 620 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGL-------GDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-A--NAYVARATIYR 620 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-H--HHHHHHHHHHH
Confidence 34456677777777777776665 33444445555556669999999999999999996 5 89999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++|++++|+..+++++.++|+++.++.++|.++...|++++|+..|+++++++|+++.++..++.+
T Consensus 621 ~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~a 686 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYV 686 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998877654
No 29
>TIGR01958 nuoE_fam NADH-quinone oxidoreductase, E subunit. This model describes the E chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. This model does not identify proteins from chloroplast and cyanobacteria.
Probab=99.54 E-value=2.1e-14 Score=103.43 Aligned_cols=95 Identities=27% Similarity=0.380 Sum_probs=78.1
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK 74 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~ 74 (243)
.+||+...|++|.++ +++.+ +.+.++++|+||++++|...|+.++++++++ +|. +.+.+.
T Consensus 43 ~l~~~~~~v~~v~tF------Y~~f~-----~~p~gk~~I~VC~g~~C~~~Ga~~v~~~l~~~L~i~~g~~t~dg~~~l~ 111 (148)
T TIGR01958 43 MLGIPPVWVYEVATF------YSMFD-----TEPVGRYHLQVCTNVPCALRGSEALLKYLENKLGIKPGETTPDGRFTLV 111 (148)
T ss_pred HhCcCHHHHHHHHhH------HhhcC-----cCCCCCEEEEEcCCchhhhcCHHHHHHHHHHHhCCCCCCCCCCCeEEEE
Confidence 468888888888655 33333 3444889999999999999999999999998 342 258999
Q ss_pred eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145 75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV 112 (243)
Q Consensus 75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~ 112 (243)
.++|+|.|+.+|++.+. +.+|.++ +++++.++++.
T Consensus 112 ~~~ClG~C~~aP~v~V~--~~~y~~v-t~e~v~~il~~ 146 (148)
T TIGR01958 112 EVECLGACGNAPVMMIN--DDYYEFL-TPEKLDELLER 146 (148)
T ss_pred EcCccCccCCCCEEEEC--CEEeCCC-CHHHHHHHHHh
Confidence 99999999999999885 5789888 89999988864
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.54 E-value=2.4e-13 Score=120.92 Aligned_cols=132 Identities=13% Similarity=0.046 Sum_probs=113.6
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHH----HHHHHHHhhccCCCCchHHHHHhHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSE----ADGFLSQAIELKPFGGIHVLYKDRC 171 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~~~la 171 (243)
.+...|++++|+..+++++...| ..+..++.+|..+...|++++ |+..|++++..+|++. .++..+|
T Consensus 221 ~l~~~g~~~eA~~~~~~al~~~p-------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~--~a~~~lg 291 (656)
T PRK15174 221 TLCAVGKYQEAIQTGESALARGL-------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV--RIVTLYA 291 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH--HHHHHHH
Confidence 34456788888888888888777 667788889999999999885 7899999999999876 8899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
.++...|++++|+..+++++.++|+++.++..+|.++...|++++|+..|++++..+|+++....
T Consensus 292 ~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 292 DALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888765443
No 31
>PLN02789 farnesyltranstransferase
Probab=99.53 E-value=3.7e-13 Score=109.04 Aligned_cols=133 Identities=14% Similarity=0.063 Sum_probs=122.4
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~ 178 (243)
.+..++|+....+++..+| ....+|..++.++...+ ++++++..+++++..+|++. .+|+.++.++..++
T Consensus 50 ~e~serAL~lt~~aI~lnP-------~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny--qaW~~R~~~l~~l~ 120 (320)
T PLN02789 50 DERSPRALDLTADVIRLNP-------GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY--QIWHHRRWLAEKLG 120 (320)
T ss_pred CCCCHHHHHHHHHHHHHCc-------hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch--HHhHHHHHHHHHcC
Confidence 3477888989989998888 88999999999999988 68999999999999999987 99999999999998
Q ss_pred CH--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 179 NF--SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 179 ~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+. ++++..++++++.+|.+..+|..++.++..+|++++|++.+.++++++|.+..+|..+..+
T Consensus 121 ~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~v 185 (320)
T PLN02789 121 PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFV 185 (320)
T ss_pred chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHH
Confidence 74 7889999999999999999999999999999999999999999999999999999877643
No 32
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.4e-13 Score=110.59 Aligned_cols=139 Identities=20% Similarity=0.404 Sum_probs=123.4
Q ss_pred cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchh-----hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hH
Q 026145 92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAK-----NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IH 164 (243)
Q Consensus 92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~-----~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~ 164 (243)
..|..+...++.+.++..|++.+..+|+..... ......+...|+-.++.|+|..|.+.|..+|.++|++. .+
T Consensus 208 vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~na 287 (486)
T KOG0550|consen 208 VRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNA 287 (486)
T ss_pred hcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhH
Confidence 356666777799999999999999987433222 24556788899999999999999999999999999875 46
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
..|.++|.+..++|+..+|+...+.+++++|...+++...|.|+..+++|++|++.|+++++...+
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 789999999999999999999999999999999999999999999999999999999999998766
No 33
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.51 E-value=3.2e-13 Score=109.06 Aligned_cols=126 Identities=17% Similarity=0.087 Sum_probs=110.5
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..|...|+++.|...|++++...| ..+.+|+.+|.++...|++++|+..|+++++++|++. .++.++|.
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al~l~P-------~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~--~a~~~lg~ 140 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQALALRP-------DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAYLNRGI 140 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH
Confidence 46677788999999999999999998 7889999999999999999999999999999999987 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
++...|++++|++.++++++++|+++.....+ .+....+++++|+..+.+++...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999987432222 23456788999999998776543
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=5.2e-13 Score=125.82 Aligned_cols=140 Identities=21% Similarity=0.220 Sum_probs=123.6
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH--------
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV-------- 165 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------- 165 (243)
|..+...|++++|+..|++++...| .++.++..+|.++...|++++|+..|+++++.+|++....
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANP-------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 4445667899999999999999988 7788999999999999999999999999999999764111
Q ss_pred ----HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 166 ----LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 166 ----~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
....+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|++.|+++++++|++..++..++.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 223558889999999999999999999999999999999999999999999999999999999999887765543
No 35
>cd03064 TRX_Fd_NuoE TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily; Nuo, also called respiratory chain Complex 1, is the entry point for electrons into the respiratory chains of bacteria and the mitochondria of eukaryotes. It is a multisubunit complex with at least 14 core subunits. It catalyzes the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane, providing the proton motive force required for energy-consuming processes. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE core subunit, also called the 24 kD subunit of Complex 1. This subfamily also include formate dehydrogenases, NiFe hydrogenases and NAD-reducing hydrogenases, that contain a NuoE domain. A subset of these proteins contain both NuoE and NuoF in a single chain. NuoF, also called the 51 kD subunit of Complex 1, contains one [4Fe-4S] clu
Probab=99.49 E-value=1.5e-13 Score=88.75 Aligned_cols=70 Identities=29% Similarity=0.574 Sum_probs=61.7
Q ss_pred CcEEEEccCCccCccCHHHHHHHHHhc-CC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145 40 LKELRVCTNRTCRRQGSMQILETLSSL-AP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL 110 (243)
Q Consensus 40 ~~~i~vC~~~~c~~~G~~~~~~~l~~~-g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l 110 (243)
+++|+||.+++|..+|++++++++++. +. +.|.+..++|+|.|..+|++.+ .+.+|.++ +++++.+++
T Consensus 1 ~~~v~vC~~~~C~~~Ga~~~~~~l~~~l~~~~~~~~~~~~v~v~~t~ClG~C~~gP~v~v--~g~~y~~v-t~~~i~~i~ 77 (80)
T cd03064 1 KHVIRVCTGTACHLRGAEALLEALEKKLGIKPGETTPDGRFTLEEVECLGACDLAPVMMI--NDDVYGRL-TPEKVDAIL 77 (80)
T ss_pred CEEEEECCCcHHHhCCHHHHHHHHHHHhCCCCCCcCCCCEEEEEEecCcCcCCCCCEEEE--CCEEECCC-CHHHHHHHH
Confidence 378999999999999999999999982 21 2699999999999999999988 58999999 999999888
Q ss_pred HH
Q 026145 111 MV 112 (243)
Q Consensus 111 ~~ 112 (243)
++
T Consensus 78 ~~ 79 (80)
T cd03064 78 EA 79 (80)
T ss_pred Hh
Confidence 64
No 36
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=99.49 E-value=2.4e-13 Score=87.26 Aligned_cols=71 Identities=38% Similarity=0.719 Sum_probs=64.0
Q ss_pred cEEEEccCCccCccCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145 41 KELRVCTNRTCRRQGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV 112 (243)
Q Consensus 41 ~~i~vC~~~~c~~~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~ 112 (243)
++|+||++++|...|+++++++|++. ++ ..+.+..++|+|.|..+|++.++|.+.+|... +++++.+++++
T Consensus 1 ~~I~VC~~~~C~~~G~~~l~~~l~~~~~~~~~~~~v~v~~~~Clg~C~~~P~v~i~~~~~~y~~v-~~~~~~~il~~ 76 (77)
T cd02980 1 HHILVCTGTACGLRGAEELLEALEKELGIRGGDGRVTVERVGCLGACGLAPVVVVYPDGVWYGRV-TPEDVEEIVEE 76 (77)
T ss_pred CEEEEccCCCcccCCHHHHHHHHHHHHhhhcCCCeEEEEEcCCcCcccCCCEEEEeCCCeEEccC-CHHHHHHHHHh
Confidence 47999999999999999999999982 32 37999999999999999999999989999999 89999988864
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.2e-13 Score=109.36 Aligned_cols=139 Identities=18% Similarity=0.156 Sum_probs=116.0
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...++++++.+.++.+....+ ...++..|..+|.++.+.|++++|++.|+++++.+|++. .+...++.++.
T Consensus 119 ~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~--~~~~~l~~~li 191 (280)
T PF13429_consen 119 LYYRLGDYDEAEELLEKLEELPA-----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP--DARNALAWLLI 191 (280)
T ss_dssp -HHHTT-HHHHHHHHHHHHH-T--------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H--HHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence 45566799999999988664331 115678899999999999999999999999999999987 89999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..|+++++.+.+....+..|.++..+..+|.++..+|++++|+.++++++..+|+++.....++.+
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~ 257 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADA 257 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccc
Confidence 999999999999888888888889999999999999999999999999999999999998887765
No 38
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.49 E-value=1e-12 Score=116.20 Aligned_cols=129 Identities=5% Similarity=-0.103 Sum_probs=104.7
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
......|.+++|...++.++...| +...++..++.++.+.+++++|+..+++++..+|++. .+++.+|.++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~P-------d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l 164 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFP-------DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA--REILLEAKSW 164 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCC-------CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH--HHHHHHHHHH
Confidence 344566788888888888888887 7788888888888888888888888888888888876 8888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-.
T Consensus 165 ~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~ 222 (694)
T PRK15179 165 DEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA 222 (694)
T ss_pred HHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence 8888888888888888888888888888888888888888888888888887765544
No 39
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=99.49 E-value=1.6e-13 Score=97.74 Aligned_cols=96 Identities=29% Similarity=0.479 Sum_probs=80.3
Q ss_pred cccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEe
Q 026145 5 FGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKS 75 (243)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~ 75 (243)
.||+..-+++|+++ +.+.++.+.++++|.||+++.|...|+.++++.+++ +|+ +.+++..
T Consensus 53 L~i~~~~v~~VaTF-----------Y~~f~~~P~Gr~~i~VC~~t~C~l~Gs~~l~~~l~~~lgi~~gett~DG~ftl~~ 121 (160)
T COG1905 53 LGIPRARVYGVATF-----------YTQFFLKPVGRHHIRVCTGTACHLKGSEALLKALEKKLGIKPGETTADGKFTLEP 121 (160)
T ss_pred hCCCHHHheeeeee-----------ehhhccCcCCCeEEEEeCCcHHhhcChHHHHHHHHHHhCCCCCCcCCCCeEEEee
Confidence 57777778888665 444555566899999999999999999999999999 442 3689999
Q ss_pred eCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHh
Q 026145 76 CGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLC 114 (243)
Q Consensus 76 ~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l 114 (243)
++|+|.|+.+|++++ ++..|... ++++..+++++..
T Consensus 122 v~ClGaC~~AP~vmi--nd~~~~~l-t~e~l~eil~~~~ 157 (160)
T COG1905 122 VECLGACGQAPVVMI--NDDVYGRL-TPEKLEEILEKLK 157 (160)
T ss_pred eeeecccccCCEEEE--CCchhccC-CHHHHHHHHHHHh
Confidence 999999999999977 77888887 9999999998754
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.7e-13 Score=112.21 Aligned_cols=110 Identities=28% Similarity=0.521 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
.....|+..+..|+|+.|+.+|..+|.++|.+. ..|.|+..+|..+|+|++|+.+..+.++++|+++..|..+|.++.
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nh--vlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNH--VLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCcc--chhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 355778999999999999999999999999977 999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 210 AMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.+|+|++|+..|.+.|+.+|++..++.-++.+
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a 113 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQA 113 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHh
Confidence 99999999999999999999999988776653
No 41
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3.1e-12 Score=103.17 Aligned_cols=116 Identities=21% Similarity=0.346 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------------IHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
..+......|+.+++.|+|..|...|++++..-+... ...++.|++.|+.++++|.+|+....++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4456678899999999999999999999987633110 135789999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++|+|..++|+.|.++..+|+|+.|+..|+++++++|+|..+..-+.++
T Consensus 286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887665543
No 42
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=99.48 E-value=1.5e-13 Score=99.15 Aligned_cols=96 Identities=22% Similarity=0.364 Sum_probs=78.9
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK 74 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~ 74 (243)
.+||+...|++|.++ +++. ++.+.++++|.||+++.|+..|+.++++++++ +|+ +.+++.
T Consensus 50 ~l~v~~~~V~~vatF------Y~~f-----~~~p~Gk~~I~VC~~~~C~~~G~~~ll~~l~~~Lgi~~gett~Dg~ftL~ 118 (156)
T PRK05988 50 ALNLSRAEVHGVITF------YHDF-----RTHPPGRHVLKLCRAEACQAMGGDALAAHAKARLGIDFHQTTADGAVTLE 118 (156)
T ss_pred HhCCCHHHHHHHHHH------hhcc-----CCCCCCCEEEEEeCCchhhcCCHHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence 467888888888655 3333 33445899999999999999999999999999 342 258999
Q ss_pred eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145 75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL 113 (243)
Q Consensus 75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~ 113 (243)
.+.|+|.|+.+|++.+ ++..|.++ +++++.+++.++
T Consensus 119 ~~~ClG~C~~aP~~~i--n~~~~~~l-t~~~~~~il~~~ 154 (156)
T PRK05988 119 PVYCLGLCACSPAAML--DGEVHGRL-DPQRLDALLAEA 154 (156)
T ss_pred eeeecCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHh
Confidence 9999999999999977 78888888 999999888754
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=1.1e-12 Score=98.14 Aligned_cols=103 Identities=25% Similarity=0.255 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
..-+.+...+|.-|+..|++..|...+++||+.+|++. .+|..++.+|...|+.+.|-+.|++|++++|++.+++.|.
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 35566788999999999999999999999999999977 9999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
|..++.+|++++|...|.+|+. +|.
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~-~P~ 134 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALA-DPA 134 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHh-CCC
Confidence 9999999999999999999997 443
No 44
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.47 E-value=1.3e-12 Score=116.30 Aligned_cols=131 Identities=8% Similarity=-0.085 Sum_probs=121.2
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|++++|...+...+...| ..+.+++.+|......|++++|+..|++++..+|+++ .++..+|.++...
T Consensus 53 ~~~g~~~~A~~l~~~~l~~~p-------~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--~a~~~la~~l~~~ 123 (656)
T PRK15174 53 LRKDETDVGLTLLSDRVLTAK-------NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP--EDVLLVASVLLKS 123 (656)
T ss_pred HhcCCcchhHHHhHHHHHhCC-------CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHc
Confidence 456799999999999998888 8888999999999999999999999999999999987 9999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
|++++|+..++++++++|+++.++..++.++...|++++|+..+.+++..+|+++.++..
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~ 183 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT 183 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877643
No 45
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=1.5e-12 Score=115.07 Aligned_cols=114 Identities=9% Similarity=-0.042 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+.+++.+|.+....|.+++|+..++.++++.|++. .++.+++.++.+.+++++|+..+++++..+|+++.+++.+|
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS--EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 5688999999999999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.++.++|++++|++.|++++..+|+++.++..++..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 999999999999999999999999999998777653
No 46
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.46 E-value=1.8e-12 Score=122.17 Aligned_cols=134 Identities=14% Similarity=0.121 Sum_probs=118.8
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH-----
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR----- 170 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l----- 170 (243)
.+...|++++|++.+++++...| ..+.+++.+|.++...|++++|++.|+++++.+|++. .++..+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P-------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~--~a~~~L~~l~~ 430 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDN-------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT--NAVRGLANLYR 430 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence 34467799999999999999988 6778899999999999999999999999999999975 444433
Q ss_pred -------------------------------------HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145 171 -------------------------------------CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ 213 (243)
Q Consensus 171 -------------------------------------a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 213 (243)
|..+...|++++|+..|+++++++|+++.+++.+|.+|...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 4455578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhh
Q 026145 214 YDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 214 ~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
+++|+..+++++..+|+++.++..+
T Consensus 511 ~~~A~~~l~~al~~~P~~~~~~~a~ 535 (1157)
T PRK11447 511 RSQADALMRRLAQQKPNDPEQVYAY 535 (1157)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999998876543
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-12 Score=106.82 Aligned_cols=124 Identities=15% Similarity=0.095 Sum_probs=117.8
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|.-|..+.+...|++-++++++.+| .+-++|+.+|+.|.-.+-+.=|+-+|++|+...|+|+ ..|..+|.|
T Consensus 371 GHEyvEmKNt~AAi~sYRrAvdi~p-------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs--Rlw~aLG~C 441 (559)
T KOG1155|consen 371 GHEYVEMKNTHAAIESYRRAVDINP-------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS--RLWVALGEC 441 (559)
T ss_pred hHHHHHhcccHHHHHHHHHHHhcCc-------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch--HHHHHHHHH
Confidence 4455566688999999999999999 9999999999999999999999999999999999998 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
|.++++.++|+.+|.+++.....+..++..+|.+|.++++.++|..+|.+.++
T Consensus 442 Y~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999988899999999999999999999999999998
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.46 E-value=2.1e-12 Score=116.90 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=123.5
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|+.++|++++.+.....| ..+.++..+|..+...|++++|+..|+++++.+|.++ .++..++.++...
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~~l~~~ 96 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQ-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND--DYQRGLILTLADA 96 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHC
Confidence 456799999999999886555 6677899999999999999999999999999999987 8999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++++|+++.++..++.+
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~ 159 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQA 159 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999988766543
No 49
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=99.46 E-value=2.1e-13 Score=99.27 Aligned_cols=96 Identities=30% Similarity=0.474 Sum_probs=79.4
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVK 74 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~ 74 (243)
.+||+...|++|.++ ++++ ++.+.++++|.||++++|+..|+.++++++++ +|+ +.+++.
T Consensus 63 ~l~v~~a~V~gVatF------Y~~f-----~~~P~Gk~~I~VC~g~aC~~~G~~~ll~~l~~~Lgi~~gett~DG~ftL~ 131 (169)
T PRK07571 63 QLKLPLSRVYGVATF------YHLF-----SLKPSGEHTCVVCTGTACYVKGSAAILEDLENELGIKAGETTADGKLSLL 131 (169)
T ss_pred HhCcCHHHHHHHHHH------cccc-----CcCCCCCEEEEEcCChHHHHCCcHHHHHHHHHHhCCCCCCcCCCCeEEEE
Confidence 467888888888555 3333 33444889999999999999999999999998 443 268999
Q ss_pred eeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHH
Q 026145 75 SCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVL 113 (243)
Q Consensus 75 ~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~ 113 (243)
.+.|+|.|+.+|++.+ ++..|.++ +++++.+++.+.
T Consensus 132 ~~~ClG~C~~AP~~~V--n~~~~~~l-t~e~v~~il~~~ 167 (169)
T PRK07571 132 TARCLGACGIAPAVVF--DGKVAGKQ-TPESVLEKVQGW 167 (169)
T ss_pred EecccCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHH
Confidence 9999999999999977 78899988 999999988765
No 50
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.46 E-value=6e-13 Score=105.02 Aligned_cols=112 Identities=26% Similarity=0.310 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV 207 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 207 (243)
...+...|+.|+++|.|++|+.+|.+++..+|.++ ..+.|++.+|+++++|..|..++..|+.++.....+|..++.+
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np--V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNP--VYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQA 174 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCc--cchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 33467899999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
-..+|+.++|.+.++.++++.|++.++...++.|
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 9999999999999999999999999988877765
No 51
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.45 E-value=2.2e-12 Score=85.08 Aligned_cols=99 Identities=29% Similarity=0.522 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
.++.+|..+...|++++|+..++++++..|.+. .++..+|.++...+++++|+..+++++...|.+..++..+|.++.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 578899999999999999999999999999976 889999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCC
Q 026145 210 AMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~p~ 230 (243)
..|++++|...+.+++..+|+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 80 KLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999998874
No 52
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.45 E-value=2.9e-12 Score=100.15 Aligned_cols=144 Identities=19% Similarity=0.138 Sum_probs=118.9
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRC 171 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la 171 (243)
.|..+...|++++|...+++++...|. ......+++.+|.++...|++++|+..|+++++.+|+++ ...+++.+|
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 355667778999999999999887761 113446789999999999999999999999999999876 223788999
Q ss_pred HHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 172 LARLTM--------GNFSAALEDVREALELAPNYTEAY-----------------ICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 172 ~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.++... |++++|+..+++++..+|++..++ ..+|..|...|++++|+..+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~ 194 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVE 194 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999886 889999999999999999885432 4678889999999999999999999
Q ss_pred cCCCch---hhhhhhhh
Q 026145 227 IDPSIR---RSKSFKVS 240 (243)
Q Consensus 227 ~~p~~~---~~~~~~a~ 240 (243)
..|+.+ .++..++.
T Consensus 195 ~~p~~~~~~~a~~~l~~ 211 (235)
T TIGR03302 195 NYPDTPATEEALARLVE 211 (235)
T ss_pred HCCCCcchHHHHHHHHH
Confidence 988754 55555443
No 53
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.45 E-value=1.8e-12 Score=118.78 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=111.1
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...|++++|.+.+++.+...| .+...++.+|.++...|++++|+..|+++++..|+++ .++.+++.++.
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~ 815 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHP-------NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA--VVLNNLAWLYL 815 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Confidence 34455666666666666666665 5567788888888888888888888888888888876 88888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..|+ .+|+..+++++...|+++..+..+|.++...|++++|+..++++++.+|.++.++..++.+
T Consensus 816 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 880 (899)
T TIGR02917 816 ELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALA 880 (899)
T ss_pred hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 8888 7788888888888888888888899999999999999999999999999888887776654
No 54
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.45 E-value=9e-13 Score=102.31 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=105.2
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
+|.-....++|..|+..|.+++...| .++..|.++|.+|.+.|.|+.|++.++.+|.++|... .+|..+|.
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P-------~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys--kay~RLG~ 157 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDP-------TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS--KAYGRLGL 157 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCC-------CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH--HHHHHHHH
Confidence 45555667799999999999999999 9999999999999999999999999999999999966 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD 215 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 215 (243)
+|+.+|++.+|++.|+++|.++|++...+.+|..+-.+++...
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999988877777655
No 55
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.45 E-value=6.9e-13 Score=83.27 Aligned_cols=65 Identities=26% Similarity=0.517 Sum_probs=50.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCC
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD-QYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 229 (243)
..|..+|.+++..|+|++|+..|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 667777777777777777777777777777777777777777777777 67777777777777776
No 56
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.44 E-value=1.1e-11 Score=92.19 Aligned_cols=109 Identities=18% Similarity=0.235 Sum_probs=98.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 202 (243)
....+..++.+|..+...|++++|+.+|++++...|+.. ...++.++|.++..+|++++|+..+++++...|.+..++.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 346778899999999999999999999999998876532 2368999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCC--------------HHHHHHHHHHHhccCCCch
Q 026145 203 CQGDVFLAMDQ--------------YDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 203 ~la~~~~~~g~--------------~~~A~~~~~~al~~~p~~~ 232 (243)
.+|.++..+|+ +++|.+.+++++..+|++.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 99999999887 6889999999999999864
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=5.7e-12 Score=96.10 Aligned_cols=135 Identities=21% Similarity=0.144 Sum_probs=117.4
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|+-+....+........+ .+...+...|...+..|+|.+|+..+.++....|++. .+|+.+|.+|.+.
T Consensus 77 ~~~G~a~~~l~~~~~~~~~~~-------~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~ 147 (257)
T COG5010 77 YLRGDADSSLAVLQKSAIAYP-------KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQL 147 (257)
T ss_pred HhcccccchHHHHhhhhccCc-------ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHc
Confidence 334456666666666555554 5555666689999999999999999999999999988 9999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|++++|...|.+++++.|+++.+..|+|..|.-.|+++.|...+..+...-+.+..+..+++.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~ 211 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALV 211 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888887776643
No 58
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=99.43 E-value=6.7e-13 Score=85.35 Aligned_cols=70 Identities=23% Similarity=0.512 Sum_probs=61.6
Q ss_pred CcEEEEccCCccCccCHHHHHHHHHhc-CC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145 40 LKELRVCTNRTCRRQGSMQILETLSSL-AP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL 110 (243)
Q Consensus 40 ~~~i~vC~~~~c~~~G~~~~~~~l~~~-g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l 110 (243)
+++|.||++++|..+|+.++++++++. +. +.|.+..++|+|.|+.+|++++ ++.+|.+. +++++.+++
T Consensus 1 ~~~i~vC~~~~C~~~G~~~ll~~l~~~l~~~~g~~~~dg~~~l~~~~ClG~C~~gP~~~v--~~~~~~~~-~~e~i~~il 77 (80)
T cd03081 1 RHVLKLCRAEACQAMGAEALAAHIKARLGIDFHETTADGSVTLEPVYCLGLCACSPAAMI--DGEVHGRV-DPEKFDALL 77 (80)
T ss_pred CeEEEEcCChHHHhCCHHHHHHHHHHHhCCCCCCcCCCCeEEEEEeeecCccCCCCEEEE--CCEEECCC-CHHHHHHHH
Confidence 378999999999999999999999983 31 2599999999999999999987 88999999 999998887
Q ss_pred HH
Q 026145 111 MV 112 (243)
Q Consensus 111 ~~ 112 (243)
++
T Consensus 78 ~~ 79 (80)
T cd03081 78 AE 79 (80)
T ss_pred Hc
Confidence 64
No 59
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=3.8e-12 Score=93.34 Aligned_cols=116 Identities=27% Similarity=0.467 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 202 (243)
..+..+..-|+.++..|+|.+|..-|..||.+-|..+ .+..|.|+|.++++++.++.|+..+.++|+++|.+..++.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~ 172 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALE 172 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHH
Confidence 4566778889999999999999999999999988653 3468899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++|.+|.++.+|++|++.|.+.+..+|...++....+++
T Consensus 173 RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 173 RRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999999999999999999988887666553
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.6e-12 Score=107.31 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=123.2
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----------
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---------- 162 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---------- 162 (243)
.|..+...|+..+|.-.|+.++..+| .++.+|..+|.+....++-..|+..+.++++++|++.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP-------~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDP-------QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhCh-------HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 45666777889999999999999999 9999999999999999999999999999999998872
Q ss_pred -----------------------------------------------------------------hHHHHHhHHHHHHHc
Q 026145 163 -----------------------------------------------------------------IHVLYKDRCLARLTM 177 (243)
Q Consensus 163 -----------------------------------------------------------------~~~~~~~la~~~~~~ 177 (243)
.++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 024556788888888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
|+|+.|+.+|+.||..+|++...|..||-.+....+.++|+..|++|+++.|...+++.+++-
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 899999999999999999999999999999999999999999999999999998888877653
No 61
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.42 E-value=3.1e-12 Score=107.31 Aligned_cols=131 Identities=24% Similarity=0.247 Sum_probs=89.8
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDR 170 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~l 170 (243)
+..|...|++++|...|++.+...| ....++..++.++...|++++|++.+++++...|.+. ....+..+
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGD-------FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 4445566677777777777776554 4455666677777777777777777777776665542 11345566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
|.++...|++++|+..++++++.+|++..+++.+|.++...|++++|++.+++++..+|++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 7777777777777777777777777777777777777777777777777777777766654
No 62
>PLN02789 farnesyltranstransferase
Probab=99.42 E-value=4.7e-12 Score=102.63 Aligned_cols=131 Identities=11% Similarity=0.008 Sum_probs=118.5
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCH--HHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANF--SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.++++++.+++++..+| .+..+|..++.++.+.++. ++++.+++++++.+|++. .+|..++.++..+|+
T Consensus 87 ~l~eeL~~~~~~i~~np-------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy--~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 87 DLEEELDFAEDVAEDNP-------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY--HAWSHRQWVLRTLGG 157 (320)
T ss_pred hHHHHHHHHHHHHHHCC-------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhh
Confidence 57899999999999998 8888999999999888874 788999999999999987 999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCH----HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAM---DQY----DAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|++|++.++++|+.+|.+..+|..++.++... |.+ ++++++..+++.++|++..+|.++..+
T Consensus 158 ~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~l 226 (320)
T PLN02789 158 WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGL 226 (320)
T ss_pred HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 99999999999999999999999999998876 333 478888899999999999999887654
No 63
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=99.41 E-value=1.3e-12 Score=83.95 Aligned_cols=70 Identities=26% Similarity=0.392 Sum_probs=61.4
Q ss_pred CcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHH
Q 026145 40 LKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEIL 110 (243)
Q Consensus 40 ~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l 110 (243)
+++|.||++++|...|++++++++++ ++. +.+.+..+||+|.|..+|.+.+ ++.+|.++ +++++.+++
T Consensus 1 ~~~i~vC~~~~C~~~Ga~~v~~~l~~~l~~~~~~~t~d~~v~l~~~gClG~C~~~P~v~V--~~~~y~~v-~~~~v~~iv 77 (80)
T cd03083 1 KYRIYLSDSITDRMNGYKAVLDALCRELGIRFGEVDEDGMVGLFFTSCTGLCDQGPALLI--NNRVFTRL-TPGRIDQIA 77 (80)
T ss_pred CEEEEEcCChHHHhCCHHHHHHHHHHHHCCCCCCcCCCCeEEEEEeceecCcCCCCeEEE--CCEEECCC-CHHHHHHHH
Confidence 47899999999999999999999999 321 2589999999999999999988 67899888 999999887
Q ss_pred HH
Q 026145 111 MV 112 (243)
Q Consensus 111 ~~ 112 (243)
+.
T Consensus 78 ~~ 79 (80)
T cd03083 78 EL 79 (80)
T ss_pred hc
Confidence 64
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=2e-12 Score=106.12 Aligned_cols=127 Identities=18% Similarity=0.265 Sum_probs=120.0
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..|....+.++..+.|..+...+| .++..|+.+|..++-.++|++|+..|++++.++|++. -++..++.+.
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp-------~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~--~~~iQl~~a~ 438 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDP-------ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENA--YAYIQLCCAL 438 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCC-------CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhh--HHHHHHHHHH
Confidence 345555588899999999999998 8899999999999999999999999999999999987 8899999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
++++++++++..|+.+++..|+.++.+...|.++..+++++.|++.|.+++.+.|.
T Consensus 439 Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 439 YRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999998
No 65
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=1.1e-12 Score=82.33 Aligned_cols=67 Identities=31% Similarity=0.524 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALEDVREALELAP 195 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p 195 (243)
++..|+.+|..++..|+|++|+..|+++++.+|+++ .+++++|.++..+| ++.+|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~--~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA--EAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367899999999999999999999999999999987 99999999999999 79999999999999998
No 66
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.40 E-value=3.1e-12 Score=97.08 Aligned_cols=100 Identities=17% Similarity=0.131 Sum_probs=93.1
Q ss_pred hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 026145 141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF-LAMDQ--YDAA 217 (243)
Q Consensus 141 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A 217 (243)
.++.++++..+++++..+|++. .+|..+|.++..+|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~--~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNS--EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 6778999999999999999988 99999999999999999999999999999999999999999975 67787 5999
Q ss_pred HHHHHHHhccCCCchhhhhhhhhcc
Q 026145 218 EKSYSTCLQIDPSIRRSKSFKVSST 242 (243)
Q Consensus 218 ~~~~~~al~~~p~~~~~~~~~a~i~ 242 (243)
.+.++++++++|+++.++.+++.++
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~ 154 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHH
Confidence 9999999999999999998887654
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.40 E-value=1e-11 Score=104.18 Aligned_cols=129 Identities=17% Similarity=0.123 Sum_probs=88.7
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|++++|...+++++...| ....+++.+|..+...|++++|+..|++++..+|.+ ...++..++.++...
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 191 LARGDLDAARALLKKALAADP-------QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSEVLPKLMECYQAL 262 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCc-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHHHHHHHHHHHHHc
Confidence 345577777777777766555 445566677777777777777777777777766654 234566677777777
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
|++++|+..++++++..|+... +..++.++...|++++|+..+.++++.+|++....
T Consensus 263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~ 319 (389)
T PRK11788 263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319 (389)
T ss_pred CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 7777777777777777775543 36677777777777777777777777777766544
No 68
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=2.8e-12 Score=117.52 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=98.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|..+...|++++|.+.|++++...| .....+..+|.++...|++++|+..+++++..+|.+. .++..+|.+
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~-------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~ 202 (899)
T TIGR02917 132 GLAYLGLGQLELAQKSYEQALAIDP-------RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV--DALLLKGDL 202 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-------CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHH
Confidence 4445556677777777777776666 4556677777777777777777777777777777765 677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
+...|++++|+..|++++..+|.++.+++.++.++...|++++|...+.++++..|+++.+....
T Consensus 203 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 267 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK 267 (899)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777666554443
No 69
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=99.40 E-value=1.9e-12 Score=81.13 Aligned_cols=68 Identities=29% Similarity=0.568 Sum_probs=59.9
Q ss_pred cEEEEccCCccCccCHHHHHHHHHh-cCCCcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHH
Q 026145 41 KELRVCTNRTCRRQGSMQILETLSS-LAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILM 111 (243)
Q Consensus 41 ~~i~vC~~~~c~~~G~~~~~~~l~~-~g~~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~ 111 (243)
++|.||++++|+.+|+.++++++++ ++...+.+..++|+|.|+.+|++++ .+..|.+. +++++.++++
T Consensus 2 ~~I~vC~~~~C~~~Ga~~l~~~l~~~L~~~~v~l~~~~ClG~C~~gP~v~V--~~~~~~~~-t~~~i~~~~~ 70 (72)
T cd03082 2 LTVRVCDSLSCAMAGAEELLAALEAGLGPEGVRVVRAPCVGRCERAPAALV--GQRPVDGA-TPAAVAAAVE 70 (72)
T ss_pred eEEEEcCChHHHHCCHHHHHHHHHHHhCCCeEEEEecCcCCccCCCCeEEE--CCEEeCCc-CHHHHHHHHh
Confidence 5799999999999999999999999 5766899999999999999999988 56677777 8888776654
No 70
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=99.40 E-value=4.2e-12 Score=84.58 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=65.9
Q ss_pred cEEEEccC----CccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEec--CCeEEEecCCHhHHHHHH
Q 026145 41 KELRVCTN----RTCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVALP--DGVVVGHCGTPARASEIL 110 (243)
Q Consensus 41 ~~i~vC~~----~~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~~--~g~~~~~~~~~~~a~~~l 110 (243)
.+|+||++ .+|...| ..++++|++ .+..++.+..++|+|.|..+|++++|| ++.||..+ +++++.+++
T Consensus 2 ~~ilVCth~rrd~~C~~~g-~~l~~~l~~~l~~~~~~~v~v~~~~clG~c~~gp~vvvyP~~~g~wy~~v-~p~~v~~Iv 79 (97)
T cd03062 2 PLVLVCTHGKRDKRCGICG-PPLAAELRAELPEHGPGGVRVWEVSHVGGHKFAGNVIIYPKGDGIWYGRV-TPEHVPPIV 79 (97)
T ss_pred CEEEEeCCCCCCcChhhcC-HHHHHHHHHHHHHhCCCceEEEeCCcCCccCcCCEEEEEeCCCeeEEeec-CHHHHHHHH
Confidence 68999996 4777777 688888887 455679999999999999999999999 99999999 999999999
Q ss_pred HHHhcCC
Q 026145 111 MVLCGIK 117 (243)
Q Consensus 111 ~~~l~~~ 117 (243)
+.++...
T Consensus 80 ~~hl~~g 86 (97)
T cd03062 80 DRLILGG 86 (97)
T ss_pred HHHhcCC
Confidence 9888654
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=109.09 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=109.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
....+.++|-.+....| ...++.....+|..|...++|+.|+..|+.||..+|+|. ..|+.+|-.+..-.+..
T Consensus 409 ~l~~i~~~fLeaa~~~~-----~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~--~lWNRLGAtLAN~~~s~ 481 (579)
T KOG1125|consen 409 HLAHIQELFLEAARQLP-----TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY--LLWNRLGATLANGNRSE 481 (579)
T ss_pred HHHHHHHHHHHHHHhCC-----CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH--HHHHHhhHHhcCCcccH
Confidence 45566666666554443 125677888999999999999999999999999999987 99999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
+|+..|++|+++.|....+++++|+.+..+|.|++|..+|-.||.+.+.
T Consensus 482 EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 482 EAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999876
No 72
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.39 E-value=2.2e-11 Score=90.25 Aligned_cols=125 Identities=18% Similarity=0.149 Sum_probs=101.6
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~ 180 (243)
++..+...+...+...+ ....+..++.+|..+...|++++|+..|.+++.+.|++. ...++.++|.++...|++
T Consensus 14 ~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 14 TFTIVADILLRILPTTS-----GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred ccccchhhhhHhccCCc-----hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 45555666655543332 225688899999999999999999999999998876532 236899999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHhccCCCc
Q 026145 181 SAALEDVREALELAPNYTEAYICQGDVFL-------AMDQYD-------AAEKSYSTCLQIDPSI 231 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~ 231 (243)
++|+..+++++.++|.....+.++|.++. .+|+++ +|...+++++..+|++
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999 777766 6666777788888854
No 73
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.38 E-value=2e-12 Score=84.47 Aligned_cols=84 Identities=18% Similarity=0.343 Sum_probs=73.4
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 219 (243)
.+|+|+.|+..|+++++..|.+.....++.+|.+++++|+|++|+..+++ ++.+|.++...+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 36899999999999999999531226788899999999999999999999 88889888999999999999999999999
Q ss_pred HHHHH
Q 026145 220 SYSTC 224 (243)
Q Consensus 220 ~~~~a 224 (243)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 74
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.9e-11 Score=95.47 Aligned_cols=122 Identities=16% Similarity=0.009 Sum_probs=112.7
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG--- 178 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~--- 178 (243)
++++.+.-++..+..+| .++.-|..+|.+|+..+++..|...|.+|+++.|+++ +.+..+|.+++...
T Consensus 137 ~~~~l~a~Le~~L~~nP-------~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~ 207 (287)
T COG4235 137 EMEALIARLETHLQQNP-------GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQ 207 (287)
T ss_pred cHHHHHHHHHHHHHhCC-------CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCc
Confidence 67888888899999998 8999999999999999999999999999999999988 99999998887654
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
.-.++...++++++.+|.+..+.+.+|..++..|+|.+|...++..++..|.+.
T Consensus 208 ~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 208 MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 367899999999999999999999999999999999999999999999987554
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.38 E-value=7.5e-12 Score=97.84 Aligned_cols=113 Identities=18% Similarity=0.237 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTE---AY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~ 201 (243)
..+..++.+|..++..|++++|+..|++++..+|+++ ...+++.+|.++...|++++|+..++++++.+|+++. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 5677899999999999999999999999999999864 2357899999999999999999999999999998775 79
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 202 ICQGDVFLAM--------DQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 202 ~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
+.+|.++... |++++|+..+++++..+|++..++..+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~ 155 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK 155 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence 9999999876 889999999999999999987765443
No 76
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-12 Score=107.17 Aligned_cols=139 Identities=14% Similarity=0.174 Sum_probs=120.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC----CCc-hHHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP----FGG-IHVLYK 168 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~-~~~~~~ 168 (243)
|.-|...+...-|.+.|.+++...| .++-.+..+|.+.+..+.|.+|+.+|+.++..-+ +.. -...+.
T Consensus 387 gmey~~t~n~kLAe~Ff~~A~ai~P-------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 387 GMEYMRTNNLKLAEKFFKQALAIAP-------SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCC-------CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 4555667788899999999999988 8888999999999999999999999999984322 110 124689
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
|+|.++.+++.+++|+..++++|.+.|.++.++..+|.+|..+|+.+.|++.|.+++.++|++.-+...+.
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999976655544
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.38 E-value=1.8e-11 Score=96.45 Aligned_cols=114 Identities=13% Similarity=-0.004 Sum_probs=100.9
Q ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 026145 128 ALALRKRAEAE-FEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYI 202 (243)
Q Consensus 128 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 202 (243)
...++..|..+ ++.|+|++|+..|++.+..+|++. ...+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 45677777776 567999999999999999999874 24789999999999999999999999999988874 78999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.+|.++..+|++++|...|+++++..|++..+.....++
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 999999999999999999999999999998877665543
No 78
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.37 E-value=1.1e-11 Score=102.55 Aligned_cols=106 Identities=20% Similarity=0.146 Sum_probs=99.2
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|++++|++.|++++...| ..+.+++.+|.++...|++++|+..+++++.++|.++ .+|+.+|.+++.+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~P-------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~--~a~~~lg~~~~~l 83 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLDP-------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA--KAYLRKGTACMKL 83 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHh
Confidence 456799999999999999998 7788999999999999999999999999999999987 9999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMD 212 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 212 (243)
|+|++|+..|+++++++|+++.+...++.+...+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988877663
No 79
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.36 E-value=3.7e-12 Score=78.90 Aligned_cols=64 Identities=25% Similarity=0.441 Sum_probs=38.8
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3455666666666666666666666666666666666666666666666666666666666553
No 80
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.36 E-value=3.1e-11 Score=109.47 Aligned_cols=140 Identities=10% Similarity=-0.041 Sum_probs=121.4
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCc-------ch-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145 98 GHCGTPARASEILMVLCGIKSDHD-------AA-KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD 169 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~-------~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 169 (243)
...|++++|...++.+....|... .. ......++..+|..+...|++++|++.+++++...|.+. .++..
T Consensus 321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~--~l~~~ 398 (765)
T PRK10049 321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ--GLRID 398 (765)
T ss_pred HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH
Confidence 455788888888888776654110 00 012345678899999999999999999999999999987 99999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+|.++...|++++|+..+++++.++|++..+++.+|.++..+|++++|+..++++++.+|+++.+..+.+
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998876544
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.36 E-value=5.8e-12 Score=99.49 Aligned_cols=112 Identities=25% Similarity=0.291 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+.-.+.+|..++..|++..|+..|..|++.+|++- .+++.+|.+|+.+|+-..|+.++.++|++.|+...+..++|
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y--~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY--QAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH--HHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 6677788999999999999999999999999999966 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
.++.++|++++|+..|..++..+|++........
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqs 147 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQS 147 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHH
Confidence 9999999999999999999999997665544433
No 82
>PRK15331 chaperone protein SicA; Provisional
Probab=99.35 E-value=2.2e-11 Score=87.45 Aligned_cols=108 Identities=13% Similarity=0.051 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
.......+..|..++..|++++|...|.-....+|.++ +.|..+|.|+..+++|++|+..|..+..++++++...+..
T Consensus 34 ~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~--~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 34 QDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP--DYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 36677889999999999999999999999999999987 9999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
|.||..+|+.++|...|..++. .|.++.+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999998 56665554
No 83
>PRK12373 NADH dehydrogenase subunit E; Provisional
Probab=99.33 E-value=3.1e-12 Score=104.13 Aligned_cols=98 Identities=21% Similarity=0.340 Sum_probs=80.9
Q ss_pred CcccccccccccceeecCCCCcccccccccccccCCC-cEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEE
Q 026145 4 GFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAEL-KELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAV 73 (243)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v 73 (243)
.+||+...|++|.+| + .+..+.+.++ ++|.||+++.|+.+|+.+|++.+++ +|+ +.+++
T Consensus 64 ~Lgvp~~~V~eVATF------Y-----tmF~~~P~Gk~~~I~VC~~t~C~l~Ga~~ll~~le~~Lgik~GeTT~DG~FTL 132 (400)
T PRK12373 64 MLDMAYIRVLEVATF------Y-----TQFQLQPVGTRAHIQVCGTTPCMLRGSEALMAVCKSKIHAHPHELNADGTLSW 132 (400)
T ss_pred HhCCCHHHHHHHHHH------h-----hcccccCCCCceEEEEcCChHHHhCChHHHHHHHHHHhCCCCCCcCCCCeEEE
Confidence 467888888888555 3 3333445576 7999999999999999999999998 443 25899
Q ss_pred EeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhc
Q 026145 74 KSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCG 115 (243)
Q Consensus 74 ~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~ 115 (243)
..+.|+|.|..+|++.| ++..|..+ +++++.+++..+-.
T Consensus 133 e~veCLGaC~~APv~~I--nd~~y~~L-Tpe~v~~IL~~l~a 171 (400)
T PRK12373 133 EEVECLGACVNAPMVQI--GKDYYEDL-TPERLEEIIDAFAA 171 (400)
T ss_pred EeeeecCccCCCCeEEE--CCEEeCCC-CHHHHHHHHHHHhC
Confidence 99999999999999977 77888888 99999999988764
No 84
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.33 E-value=5.2e-11 Score=85.14 Aligned_cols=95 Identities=12% Similarity=0.007 Sum_probs=88.7
Q ss_pred ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145 91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR 170 (243)
Q Consensus 91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 170 (243)
|.-+..+...|++++|..+|+-+...+| .++..|+.+|.++..+|+|++|+..|.+++.++|+++ .++++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp-------~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp--~~~~~a 109 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDA-------WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP--QAPWAA 109 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHH
Confidence 4445566778899999999999999998 9999999999999999999999999999999999998 999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Q 026145 171 CLARLTMGNFSAALEDVREALELA 194 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~ 194 (243)
|.|++..|+.+.|...|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 85
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.33 E-value=4.8e-12 Score=101.60 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=95.6
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+.++...|++++|.+.+++++...| .+...+..++..+...|+++++.+.+.......|.++ ..+..+|.
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P-------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~--~~~~~la~ 222 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDP-------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDP--DLWDALAA 222 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSC--CHCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHH--HHHHHHHH
Confidence 35567788999999999999999998 8888899999999999999998888888888878877 88999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
++..+|++++|+.+++++++.+|+++..+..+|.++...|+.++|...+.+++..
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred Hhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999988753
No 86
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.32 E-value=5.7e-11 Score=97.80 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=108.7
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..+...|.++.|...++.++...| +++..+-..+.++++.++.++|++.+++++.++|..+ ..+.++|.++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~P-------~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~--~l~~~~a~al 384 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQP-------DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP--LLQLNLAQAL 384 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc--HHHHHHHHHH
Confidence 344556688888888888888887 7788888888899999999999999999999999876 8888889999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
++.|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+.+...+...-..+.
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAI 445 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998888899888888888888888887777777777766665544443
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.9e-11 Score=96.04 Aligned_cols=139 Identities=11% Similarity=-0.015 Sum_probs=125.2
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLAR 174 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~ 174 (243)
.|...++|+-|..+|++.+..+. ..++.+.++|.+++..++++-++..|++|+....++. -+++|+|+|.+.
T Consensus 333 ~yfY~~~PE~AlryYRRiLqmG~-------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~va 405 (478)
T KOG1129|consen 333 GYFYDNNPEMALRYYRRILQMGA-------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVA 405 (478)
T ss_pred ccccCCChHHHHHHHHHHHHhcC-------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeE
Confidence 44556699999999999998886 7788999999999999999999999999998754221 468999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
...|++..|-++|+-++..+|++.+++.++|++-.+.|+.++|...++.+-...|+-.+...+++.+
T Consensus 406 V~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 406 VTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred EeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 9999999999999999999999999999999999999999999999999999999988877766554
No 88
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.31 E-value=1.3e-11 Score=76.46 Aligned_cols=65 Identities=23% Similarity=0.256 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 026145 132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT 198 (243)
Q Consensus 132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 198 (243)
+.+|..++..|++++|+..|+++++.+|++. .+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP--EAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH--HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4679999999999999999999999999977 9999999999999999999999999999999875
No 89
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=9.6e-11 Score=89.01 Aligned_cols=135 Identities=16% Similarity=0.137 Sum_probs=116.5
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+..+...|.+++|+++++..+..+| .+...+...--+.-.+|+--+|++.....++..+.|. ++|..++.
T Consensus 92 kam~lEa~~~~~~A~e~y~~lL~ddp-------t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~--EAW~eLae 162 (289)
T KOG3060|consen 92 KAMLLEATGNYKEAIEYYESLLEDDP-------TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ--EAWHELAE 162 (289)
T ss_pred HHHHHHHhhchhhHHHHHHHHhccCc-------chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH--HHHHHHHH
Confidence 34556677899999999999998887 5555666666666778888899999999999999988 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHhccCCCchhhhh
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---QYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
+|+..|+|++|.-++++.+-+.|.++-.+..+|.+++-+| +++-|..+|.++++++|.+..++.
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 9999999999999999999999999999999999998877 567799999999999997766653
No 90
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=2e-11 Score=87.01 Aligned_cols=91 Identities=13% Similarity=0.147 Sum_probs=85.9
Q ss_pred HHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 149 GFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 149 ~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+.|++++..+|++. .+.+.+|.++...|++++|++.+++++..+|.++.++..+|.++...|++++|+..+++++..+
T Consensus 4 ~~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56889999999986 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhhhhhc
Q 026145 229 PSIRRSKSFKVSS 241 (243)
Q Consensus 229 p~~~~~~~~~a~i 241 (243)
|+++..+..++.+
T Consensus 82 p~~~~~~~~la~~ 94 (135)
T TIGR02552 82 PDDPRPYFHAAEC 94 (135)
T ss_pred CCChHHHHHHHHH
Confidence 9999998877765
No 91
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.28 E-value=2.5e-10 Score=80.26 Aligned_cols=116 Identities=19% Similarity=0.240 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT---EAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 201 (243)
..+..++..|...++.|+|.+|++.|+.+....|-.. ...+...++.+|+..++|++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 4467899999999999999999999999999998764 347889999999999999999999999999999875 589
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 202 ICQGDVFLAMDQ---------------YDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 202 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.+|.+++.+.. ..+|...|++.+...|+++-+-...+++
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R~ 142 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKRM 142 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhcC
Confidence 999999999887 8899999999999999998887766553
No 92
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.28 E-value=1.6e-10 Score=83.44 Aligned_cols=121 Identities=25% Similarity=0.297 Sum_probs=99.8
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMG 178 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~ 178 (243)
.++...+.+.++......| .+.....+.+.+|..++..|++++|+..|++++...|++. ...+...++.+++..|
T Consensus 24 ~~~~~~~~~~~~~l~~~~~----~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~ 99 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYP----SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG 99 (145)
T ss_pred CCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC
Confidence 4577888887888776665 1224567888999999999999999999999999886653 2357888999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
+|++|+..++.+ .-.+-.+.++..+|.+|...|++++|+..|++++
T Consensus 100 ~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 100 QYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999763 3345557788899999999999999999999875
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.27 E-value=1.3e-10 Score=100.19 Aligned_cols=129 Identities=22% Similarity=0.191 Sum_probs=116.1
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 176 (243)
+...+..+++..-+.++-+..+ ..+..|+..|..+..+|++.+|.+.|..|+.++|++. .....+|.++..
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~-------l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv--~s~~Ala~~lle 730 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDP-------LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV--PSMTALAELLLE 730 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcch-------hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHH
Confidence 3344466677666666766666 7888999999999999999999999999999999998 999999999999
Q ss_pred cCCHHHHHH--HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 177 MGNFSAALE--DVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 177 ~~~~~~A~~--~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
.|+..-|.. .+..+++++|.++++|+.+|.++.++|+.++|.++|+.++++++.+|..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 999888887 9999999999999999999999999999999999999999999988754
No 94
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.27 E-value=1.4e-10 Score=89.63 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYICQ 204 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l 204 (243)
...|+.|..+++.|+|..|...|..-++..|++. .+.+++.||.+++.+|+|++|...|..+.+-.|++ +++++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3488999999999999999999999999999886 46899999999999999999999999999988865 6889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
|.+...+|+.++|...|+++++..|+.+.+......
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~ 257 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA 257 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 999999999999999999999999999888765544
No 95
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=1.4e-10 Score=101.33 Aligned_cols=125 Identities=21% Similarity=0.202 Sum_probs=119.5
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.....|+.++|.+++.+.+.+.| ..+.+|+.+|.+|..+|+..++...+-.|-.++|.+. ..|..++....
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~--e~W~~ladls~ 218 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY--ELWKRLADLSE 218 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHH
Confidence 33445799999999999999999 9999999999999999999999999999999999987 99999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
++|++++|.-+|.+||+.+|.+.+..+..+.+|.++|+...|...|.+++.++|
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.26 E-value=3e-10 Score=89.98 Aligned_cols=147 Identities=17% Similarity=0.246 Sum_probs=126.4
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchh--------hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAK--------NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH 164 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 164 (243)
.|..+.+.|.++.|..-|+..+...|...... ......+......++..|++..|+++..+.|++.|.+.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda-- 189 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA-- 189 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh--
Confidence 47788889999999999999998876332221 11222344455566778999999999999999999987
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..+..++.||...|+...|+.+++.+-++..++.+.++.++.+++..|+.+.++...+++++++|++...+-+++++
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888776654
No 97
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.25 E-value=1.5e-10 Score=95.39 Aligned_cols=114 Identities=18% Similarity=0.120 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
....++|..+..++..+++++|+..++..+...|+|+ .++...+.+++..++.++|++.+++++.++|+.+..+.++|
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a 381 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA 381 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 4456788999999999999999999999999999988 88888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.+|.+.|++.+|+..++..+.-+|+++..|.++++.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqa 417 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQA 417 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHH
Confidence 999999999999999999999999999999998874
No 98
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.7e-10 Score=86.60 Aligned_cols=135 Identities=18% Similarity=0.130 Sum_probs=117.9
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.+..+.|...+.++....| ...+.....|..+...|+|++|+++|+..++-+|.|. .++-..-.+...+|+
T Consensus 65 ~~~~~lAq~C~~~L~~~fp-------~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK 135 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFP-------GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT--VIRKRKLAILKAQGK 135 (289)
T ss_pred hcchHHHHHHHHHHHHhCC-------CChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh--HHHHHHHHHHHHcCC
Confidence 3466777777777665555 5566777788899999999999999999999999987 777777777788999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY 243 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~ 243 (243)
-.+|++.+..-++..+.+.++|..++.+|...|+|++|.-++++.+-++|.++.....++.+.|
T Consensus 136 ~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 136 NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887776643
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=3.3e-11 Score=75.31 Aligned_cols=67 Identities=27% Similarity=0.414 Sum_probs=51.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+..|+|++|+..|++++..+|++..+++.+|.+|...|++++|...+.+++..+|+++..+..+++|
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 4677788888888888888888888888888888888888888888888888888777777766654
No 100
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.23 E-value=5.2e-10 Score=77.33 Aligned_cols=98 Identities=18% Similarity=0.081 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQ 204 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l 204 (243)
.++|+.|..+-..|+.++|+.+|++++....... ...++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 4688999999999999999999999999765442 3578999999999999999999999999999898 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHhc
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~ 226 (243)
+.++...|++++|+.++-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988876
No 101
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.20 E-value=9.8e-11 Score=74.20 Aligned_cols=71 Identities=20% Similarity=0.380 Sum_probs=50.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..+|...++|++|+..+++++.++|+++..++.+|.++..+|++++|...++++++..|+++.+....+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 34566777777777777777777777777777777777777777777777777777777777666665543
No 102
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=7e-10 Score=84.83 Aligned_cols=120 Identities=17% Similarity=0.036 Sum_probs=111.7
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
......|++..|+..+.++....| .+...|..+|.+|.+.|++++|...|.+++++.|+++ .+..|+|+.+
T Consensus 108 k~~~~~g~~~~A~~~~rkA~~l~p-------~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p--~~~nNlgms~ 178 (257)
T COG5010 108 KNQIRNGNFGEAVSVLRKAARLAP-------TDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP--SIANNLGMSL 178 (257)
T ss_pred HHHHHhcchHHHHHHHHHHhccCC-------CChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc--hhhhhHHHHH
Confidence 344567799999999999999998 8999999999999999999999999999999999998 9999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 223 (243)
+-.|+++.|...+.++...-+.+..+..+++.+....|++++|.....+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999999999999988888999999999999999999999876544
No 103
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.18 E-value=2e-10 Score=101.25 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=129.7
Q ss_pred CCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145 82 CGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG 161 (243)
Q Consensus 82 c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 161 (243)
-...|++.......+| ..|++..+..+...++... ......+..+|.+|..+..+|+|++|-.+|.+++..+|++
T Consensus 266 n~~nP~~l~~LAn~fy-fK~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~ 340 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFY-FKKDYERVWHLAEHAIKNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN 340 (1018)
T ss_pred cCCCcHHHHHHHHHHh-hcccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC
Confidence 3445665444344444 4559999999998887443 2334667789999999999999999999999999999998
Q ss_pred chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHhccCCCchhhhhh
Q 026145 162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD----QYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
..-.++.+|++|+..|+++.|..+|+++++..|++.+....+|.+|...+ ..+.|...+.++++..|.+.++|..
T Consensus 341 -~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~ 419 (1018)
T KOG2002|consen 341 -FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLE 419 (1018)
T ss_pred -ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 23678999999999999999999999999999999999999999998886 6788999999999999999999988
Q ss_pred hhhc
Q 026145 238 KVSS 241 (243)
Q Consensus 238 ~a~i 241 (243)
++++
T Consensus 420 laql 423 (1018)
T KOG2002|consen 420 LAQL 423 (1018)
T ss_pred HHHH
Confidence 8775
No 104
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-10 Score=94.05 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=125.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----------h
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----------I 163 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------~ 163 (243)
...+...++++.|..+--.+++.++ .++.+++..|.+++...+.+.|+..|++++.++|++. .
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~-------~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~ 248 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDA-------TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKK 248 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhccc-------chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHH
Confidence 3445566789999999888898888 8899999999999999999999999999999999874 1
Q ss_pred HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 164 HVLYKDRCLARLTMGNFSAALEDVREALELAPNY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 164 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
...+...|.-.++.|+|..|.+.|..+|.++|++ +..|.+++.+..++|+.++|+...+.++.++|....++..++
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra 328 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRA 328 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHH
Confidence 2567788999999999999999999999999976 567999999999999999999999999999999988887766
Q ss_pred hc
Q 026145 240 SS 241 (243)
Q Consensus 240 ~i 241 (243)
++
T Consensus 329 ~c 330 (486)
T KOG0550|consen 329 NC 330 (486)
T ss_pred HH
Confidence 54
No 105
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.17 E-value=8.4e-10 Score=95.09 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=103.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHhhcc--CCCCchHHHHHhHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK--------ANFSEADGFLSQAIEL--KPFGGIHVLYKDRC 171 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~~~la 171 (243)
+...|..+|++++..+| ..+.++-.++.++... .+...+.....+++.+ +|.++ .++..+|
T Consensus 357 ~~~~A~~lle~Ai~ldP-------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala 427 (517)
T PRK10153 357 SLNKASDLLEEILKSEP-------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP--RIYEILA 427 (517)
T ss_pred HHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHH
Confidence 47799999999999998 7777777777666443 2345666667776664 56655 8899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
..+...|++++|...+++++.++| ++.+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 428 ~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 428 VQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 999999999999999999999999 5889999999999999999999999999999999874
No 106
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=4.9e-10 Score=88.00 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=108.8
Q ss_pred cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHH
Q 026145 92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYK 168 (243)
Q Consensus 92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~ 168 (243)
..|.-|...|-++.|.++|..+...+. .-..++..+..+|....+|++|++.-.+...+.+++. ++.+|.
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 345666777788888888887776553 4456777778888888888888888888888777653 567888
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.++..+....+.+.|...+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.||+.
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 888888888899999999999999999998899999999999999999999999999988875
No 107
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.4e-10 Score=102.07 Aligned_cols=132 Identities=15% Similarity=0.090 Sum_probs=120.7
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
+..++|+++|.+++..+| .+..+-..+|-++...|++.+|+..|.++.+-..+.. .+|.|+|.||..+|+|
T Consensus 626 k~~~KAlq~y~kvL~~dp-------kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDP-------KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--DVWLNLAHCYVEQGQY 696 (1018)
T ss_pred HHHHHHHHHHHHHHhcCc-------chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--ceeeeHHHHHHHHHHH
Confidence 367899999999999998 8899999999999999999999999999988776655 8999999999999999
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 181 SAALEDVREALELA--PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 181 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..|++.|+.+++.. .++..++..||.+++..|++.+|.+++.+|+.+.|+++.+..+++-+
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 99999999999865 35688999999999999999999999999999999999988777654
No 108
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.16 E-value=7.6e-10 Score=99.90 Aligned_cols=131 Identities=14% Similarity=0.142 Sum_probs=92.2
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|+.++|+.++++++...+ .....+..+|..+...|+|++|++.|+++++.+|+++ .++..++..+...
T Consensus 79 ~~~G~~~~A~~~~eka~~p~n-------~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~--~~l~gLa~~y~~~ 149 (822)
T PRK14574 79 GWAGRDQEVIDVYERYQSSMN-------ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP--DLISGMIMTQADA 149 (822)
T ss_pred HHcCCcHHHHHHHHHhccCCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHhhc
Confidence 344677777777777763333 3444555557777777888888888888888888876 7777777778888
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
+++++|++.+++++..+|.+... ..++.++...++..+|++.++++++.+|+++++...+
T Consensus 150 ~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~ 209 (822)
T PRK14574 150 GRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNH 209 (822)
T ss_pred CCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 88888888888888777775443 4455555556667668888888888888877765443
No 109
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.8e-10 Score=94.34 Aligned_cols=114 Identities=15% Similarity=0.144 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
.++.++.+.|++.+..|++++|.+.|.+++.-+.... ++++++|..+-.+|+.++|+.+|-+.-.+--++.+++++++
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qia 565 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIA 565 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555666778888889999999999999998887755 99999999999999999999999888777778899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.+|..+.+..+|++++.++..+-|++|....-++.+
T Consensus 566 niye~led~aqaie~~~q~~slip~dp~ilskl~dl 601 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSLIPNDPAILSKLADL 601 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 999999999999999999999999999887666543
No 110
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=1.3e-09 Score=98.47 Aligned_cols=135 Identities=10% Similarity=-0.031 Sum_probs=114.0
Q ss_pred ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145 91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR 170 (243)
Q Consensus 91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 170 (243)
+..+......|+++.|.+.|++++...| ..+.....+..++...|++++|+.++++++ +|.+........+
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~P-------~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llal 108 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAGP-------LQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASA 108 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCc-------cchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHH
Confidence 3345666788899999999999999887 554333477888888999999999999999 5544312445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
|..+..+|+|++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|++...
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~ 172 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY 172 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence 7899999999999999999999999999999999999999999999999999999999986554
No 111
>PRK11906 transcriptional regulator; Provisional
Probab=99.14 E-value=2.1e-09 Score=89.05 Aligned_cols=123 Identities=17% Similarity=0.143 Sum_probs=109.4
Q ss_pred CHhHHHHHHHHHh---cCCCCCcchhhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145 102 TPARASEILMVLC---GIKSDHDAAKNLEALALRKRAEAEFEK---------ANFSEADGFLSQAIELKPFGGIHVLYKD 169 (243)
Q Consensus 102 ~~~~a~~~l~~~l---~~~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~~~ 169 (243)
+.+.|..+|.+++ ..+| ..+.++..++.+++.. .+-.+|.+.-.+|++++|.|+ .++..
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp-------~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da--~a~~~ 343 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQT-------LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG--KILAI 343 (458)
T ss_pred HHHHHHHHHHHHhhcccCCc-------ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH--HHHHH
Confidence 4457788899999 7777 7788888888877643 346788999999999999998 99999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
+|.++...++++.|+..|++|+.++|+.+.+|+..|.+..-.|+.++|.+.++++++++|.-..
T Consensus 344 ~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 344 MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 9999999999999999999999999999999999999999999999999999999999996543
No 112
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.13 E-value=6.4e-11 Score=93.17 Aligned_cols=140 Identities=15% Similarity=0.130 Sum_probs=106.5
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc------------
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG------------ 162 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------ 162 (243)
..|...+.|+.|...+...+...| .+...+...|.++...+++++|+++|+.+++.+|.+.
T Consensus 264 kvY~ridQP~~AL~~~~~gld~fP-------~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY 336 (478)
T KOG1129|consen 264 KVYQRIDQPERALLVIGEGLDSFP-------FDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY 336 (478)
T ss_pred HHHHHhccHHHHHHHHhhhhhcCC-------chhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence 456666778888888877777776 6666677777777777777777777777777766552
Q ss_pred --------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHH
Q 026145 163 --------------------IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQGDVFLAMDQYDAAEK 219 (243)
Q Consensus 163 --------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~ 219 (243)
..+.+.|+|.|-+..++++-++..|++++....+ -+++|+++|.+....|++.-|..
T Consensus 337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 0267778888888888888888888888875432 35788888888888888888888
Q ss_pred HHHHHhccCCCchhhhhhhhhc
Q 026145 220 SYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 220 ~~~~al~~~p~~~~~~~~~a~i 241 (243)
.|+-++..||++.+++.+++-+
T Consensus 417 cfrlaL~~d~~h~ealnNLavL 438 (478)
T KOG1129|consen 417 CFRLALTSDAQHGEALNNLAVL 438 (478)
T ss_pred HHHHHhccCcchHHHHHhHHHH
Confidence 8888888888888888777643
No 113
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=1.6e-09 Score=85.16 Aligned_cols=134 Identities=12% Similarity=0.105 Sum_probs=120.2
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..|....++++|++.-+++.+.. +.......+..+..+|..+....+.+.|+..+.+|++.+|+.. .+-..+|.+.
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~--~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv--RAsi~lG~v~ 224 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLG--GQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV--RASIILGRVE 224 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcC--CccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce--ehhhhhhHHH
Confidence 45666779999999999888777 3455667889999999999999999999999999999999987 8888899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 175 LTMGNFSAALEDVREALELAPNY-TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
...|+|+.|++.++.+++.+|.. +.+.-.+..||..+|+.++...++.++.+..+...
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 99999999999999999999986 67888999999999999999999999999887644
No 114
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.12 E-value=2e-09 Score=82.24 Aligned_cols=115 Identities=17% Similarity=0.156 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 201 (243)
..+..++..|..++..|+|.+|+..|++++...|.+. ...+.+.+|.+++..|+|.+|+..+++.++..|++ +.++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 4577899999999999999999999999999999765 46789999999999999999999999999999986 4689
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 202 ICQGDVFLAMD-----------QYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 202 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+.+|.+++.+. ...+|+..|+..+...|+++.+.....+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~ 132 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKR 132 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHH
Confidence 99999877653 3458999999999999998877655443
No 115
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.12 E-value=2.6e-10 Score=84.88 Aligned_cols=106 Identities=25% Similarity=0.198 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+..++.+|..|-..|-++-|.-.|.+++.+.|+-+ .+++.+|..+...|+|+.|.+.|+..++++|.+-.++.++|
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~--~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP--EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH--HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 6678899999999999999999999999999999955 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
..++--|++.-|.+.+.+-.+.||++|-
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 9999999999999999999999999874
No 116
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1e-09 Score=88.84 Aligned_cols=134 Identities=19% Similarity=0.177 Sum_probs=110.0
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCC----C-Ccc---hhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKS----D-HDA---AKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHV 165 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~----~-~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 165 (243)
|+.|.+.|++..|...|++++..-. . ..+ ........+.+++.++.+.++|..|+..++++|..+|.|. .
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~--K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV--K 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch--h
Confidence 5567777888999888888653211 0 011 1123445688999999999999999999999999999998 9
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHhccCC
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA-EKSYSTCLQIDP 229 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 229 (243)
+++.+|.++..+++|+.|+.+|++++++.|+|..+...+..+..+..++.+. .+.|.+.+..-+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999999999999998887777665 678888877654
No 117
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.11 E-value=3.3e-09 Score=87.92 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=107.5
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...+.++.|+++++++....| . ....++.++...++..+|+...++++...|.+. ..+...+..+...
T Consensus 180 ~~t~~~~~ai~lle~L~~~~p-------e---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~--~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDP-------E---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDS--ELLNLQAEFLLSK 247 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCC-------c---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhc
Confidence 344589999999999887775 2 455688999999999999999999999999987 9999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
++++.|+...+++..+.|++...|+.|+.+|..+|++++|+..++.+-...+.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~ 301 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKD 301 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence 999999999999999999999999999999999999999998888665544333
No 118
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.11 E-value=3.1e-10 Score=70.82 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=61.3
Q ss_pred HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
++..|+|++|+..|++++..+|++. .++..+|.++++.|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP--EARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH--HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999988 999999999999999999999999999999998888877765
No 119
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.10 E-value=4.5e-09 Score=72.12 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY----TEAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~ 201 (243)
.....+-..|..+...|+.+.|++.|.+++.+-|+.+ .+|+|++..+...|+.++|+..+++++++.... -.++
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~ 118 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF 118 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence 4445566778888999999999999999999999987 999999999999999999999999999986443 3579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.++|.+|..+|+-+.|...|..+.++-...
T Consensus 119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 119 VQRGLLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 999999999999999999999987765543
No 120
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=2.7e-09 Score=87.59 Aligned_cols=138 Identities=13% Similarity=-0.001 Sum_probs=120.8
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..-...|++++|.+.|++++..+. .-..++++.|.++...|+.++|+.+|-+.-.+--++. +++..++.
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~--evl~qian 566 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNA--EVLVQIAN 566 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhH--HHHHHHHH
Confidence 45555667799999999999998776 7788999999999999999999999988877766665 89999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+|-.+.+..+|++++.++..+-|+++.++..+|.+|-+.|+-.+|.+++-...+..|.+.+...+++
T Consensus 567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888888888888877766655
No 121
>COG3411 Ferredoxin [Energy production and conversion]
Probab=99.09 E-value=2.6e-10 Score=67.31 Aligned_cols=47 Identities=34% Similarity=0.556 Sum_probs=44.1
Q ss_pred cEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCC
Q 026145 70 EVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIK 117 (243)
Q Consensus 70 ~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~ 117 (243)
++.+..+||++.|..+|++++||+|.||..+ ++++|.++.++++..+
T Consensus 2 ~i~~t~tgCl~~C~~gPvl~vYpegvWY~~V-~p~~a~rIv~~hl~~G 48 (64)
T COG3411 2 SIRVTRTGCLGVCQDGPVLVVYPEGVWYTRV-DPEDARRIVQSHLLGG 48 (64)
T ss_pred ceEEeecchhhhhccCCEEEEecCCeeEecc-CHHHHHHHHHHHHhCC
Confidence 5789999999999999999999999999999 9999999999988655
No 122
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.09 E-value=6.1e-09 Score=79.54 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=110.0
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL 172 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~ 172 (243)
|..+...|++++|++.|+.+....| .+.....+++.+|..+++.|+|++|+..|++.+...|+++ ...+++.+|.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P----~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYP----NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-T----TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCC----CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 3334567899999999999987665 2235677889999999999999999999999999999886 4578888999
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 173 ARLTMG-----------NFSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 173 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
+++.+. ...+|+..|+..++..|++.. --+..|..|.+.|.|..|+.-++.+
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 877653 245899999999999998732 2345788899999999999999999
Q ss_pred hccCCCchhhhhhhh
Q 026145 225 LQIDPSIRRSKSFKV 239 (243)
Q Consensus 225 l~~~p~~~~~~~~~a 239 (243)
++..|+.+.+...+.
T Consensus 168 ~~~yp~t~~~~~al~ 182 (203)
T PF13525_consen 168 IENYPDTPAAEEALA 182 (203)
T ss_dssp HHHSTTSHHHHHHHH
T ss_pred HHHCCCCchHHHHHH
Confidence 999999877655443
No 123
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.09 E-value=9.9e-10 Score=69.54 Aligned_cols=70 Identities=29% Similarity=0.454 Sum_probs=64.5
Q ss_pred HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
..++...++|++|++.+++++..+|+++ .++..+|.++..+|++.+|+..++++++..|+++.+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP--ELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc--hhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999988 999999999999999999999999999999999887765543
No 124
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=3.3e-09 Score=87.93 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=99.4
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
....+.+.+.......| .....+..+|.++...|++++|+..+++++++.|++. .++..+|.++...|+++
T Consensus 95 ~~~~~~~~l~~~~~~~~-------~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~--~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 95 MRDHVARVLPLWAPENP-------DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA--WAVHAVAHVLEMQGRFK 165 (355)
T ss_pred CchhHHHHHhccCcCCC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHcCCHH
Confidence 44445555544333333 5566777889999999999999999999999999987 89999999999999999
Q ss_pred HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 182 AALEDVREALELAPNYT----EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
+|+..+++++...|.++ ..+..+|.++...|++++|+..+++++...|
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999887433 3566899999999999999999999987766
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.07 E-value=5.8e-09 Score=81.69 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYI 202 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~ 202 (243)
.+..++..|..++..|+|++|++.|++++...|..+ ...+.+.+|.++++.++|++|+..+++.++.+|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 466688899999999999999999999999999876 23456889999999999999999999999999977 46899
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 203 CQGDVFLAMD---------------Q---YDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 203 ~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
.+|.++..++ + ..+|+..|++.++..|+++-+.....+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~r 166 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKR 166 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHH
Confidence 9998875554 1 357889999999999998766554443
No 126
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3e-09 Score=80.64 Aligned_cols=108 Identities=23% Similarity=0.302 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------CCCCc--------hHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL--------KPFGG--------IHVLYKDRCLARLTMGNFSAALEDVRE 189 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~ 189 (243)
.....+...|+-+++.|+|.+|...|..|+.. .|.++ +...+.|+++|++..++|-++++....
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 44567889999999999999999999999743 34432 235788999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 190 ALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 190 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
+|..+|.+..+++.+|.++....+..+|.+.|+++++++|.-..
T Consensus 256 iL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas 299 (329)
T KOG0545|consen 256 ILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS 299 (329)
T ss_pred HHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence 99999999999999999999999999999999999999997543
No 127
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=6.3e-10 Score=83.88 Aligned_cols=100 Identities=27% Similarity=0.390 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+..+...|+.++....|..|+..|.++|.++|..+ ..|.+++.|++++++|+.+.....+++++.|+...+++.+|
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~--~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA--SYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcc--hhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 4455677789999999999999999999999999976 89999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhcc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.++.....|++|+..++++..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999654
No 128
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=1.3e-09 Score=92.68 Aligned_cols=135 Identities=19% Similarity=0.273 Sum_probs=112.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-----Cc-hHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-----GG-IHVL 166 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~-~~~~ 166 (243)
|..|...+++.+|+.+|++++.... -.....+..+..+.++|..|.+.|++++|..++++|+++... .+ ....
T Consensus 248 a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 248 ALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 5677888899999999998873221 023445588899999999999999999999999999987422 11 4678
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+.+++.++..++++++|..++++++++. |.-+..+.++|.+|..+|++++|.+.+++++.+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 8999999999999999999999999863 2346789999999999999999999999999875
No 129
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=99.05 E-value=3.7e-10 Score=81.53 Aligned_cols=85 Identities=27% Similarity=0.348 Sum_probs=73.0
Q ss_pred cccccccccccCCCcEEEEccCCccCccCHHHHHHHHHh-cCC--------CcEEEEeeCCCCCCCCCCeEEEecCCeEE
Q 026145 27 FCFPLPRARINAELKELRVCTNRTCRRQGSMQILETLSS-LAP--------PEVAVKSCGCLGRCGAGPNLVALPDGVVV 97 (243)
Q Consensus 27 ~~~~~~~~~~~~~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~--------~~v~v~~~gc~g~c~~~p~~~~~~~g~~~ 97 (243)
..|+.|..|.+.+++||.||+.+.|..+|++++.+..++ +|+ ..+++..++|+|.|-++|.+.+ ...+|
T Consensus 100 atfYtmf~r~p~gKy~v~VC~ttpC~lrg~d~i~ea~~k~lgi~~Gett~d~~Ftl~e~eClGaCvnaPmi~I--ND~yy 177 (233)
T KOG3196|consen 100 ATFYTMFFRKPVGKYHVQVCTTTPCMLRGSDDILEACKKQLGIKVGETTKDGLFTLEEVECLGACVNAPMIAI--NDDYY 177 (233)
T ss_pred HHHHHHhhccCCCCceEEEecCcHHhhhccHHHHHHHHHHhCccccccccccceeeecchhhhhhccCceeee--cchhh
Confidence 346777788888999999999999999999999999998 444 2588999999999999999976 56777
Q ss_pred EecCCHhHHHHHHHHHh
Q 026145 98 GHCGTPARASEILMVLC 114 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l 114 (243)
... +.++..+|++.+-
T Consensus 178 edl-t~k~l~eIle~L~ 193 (233)
T KOG3196|consen 178 EDL-TPKKLVEILEDLK 193 (233)
T ss_pred ccC-CHHHHHHHHHHHh
Confidence 777 9999999998765
No 130
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.3e-09 Score=83.67 Aligned_cols=111 Identities=25% Similarity=0.398 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC 203 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 203 (243)
..+..+..-|+.|++..+|..|+..|.+.|...-.++ .+..|.|+|.+.+.+|+|..|+.+..+++.++|.+..++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 5788899999999999999999999999999865544 46789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
-|.|++.+.++++|..+....+.++.+...+..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~ 191 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIE 191 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 999999999999999999998888766554433
No 131
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.05 E-value=6.8e-10 Score=72.38 Aligned_cols=83 Identities=18% Similarity=0.241 Sum_probs=69.6
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.|++++|+.++++++...| . . .+...++.+|.++++.|+|++|+..+++ ...+|.+. ...+.+|.+++.+|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~-~---~-~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~--~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDP-T---N-PNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP--DIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHC-G---T-HHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH--HHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCC-C---C-hhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH--HHHHHHHHHHHHhCC
Confidence 3689999999999997775 1 1 1566788899999999999999999999 88888765 777788999999999
Q ss_pred HHHHHHHHHHH
Q 026145 180 FSAALEDVREA 190 (243)
Q Consensus 180 ~~~A~~~~~~a 190 (243)
|++|+..++++
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999875
No 132
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=3.8e-09 Score=87.54 Aligned_cols=129 Identities=17% Similarity=0.066 Sum_probs=99.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc----CHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA----NFSEADGFLSQAIELKPFGGIHVLYKD 169 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~~~ 169 (243)
+..+...|+++++.+.+++++...| .+...+.. +..++..+ ....+...+.......|... .++..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P-------~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~ 119 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYP-------RDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYW--YLLGM 119 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-------CcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcH--HHHHH
Confidence 3344566799999999999988877 44444443 44444444 44444444444334555544 66778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
+|.++...|++++|+..++++++++|+++.++..+|.++...|++++|+.++++++...|.++
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 899999999999999999999999999999999999999999999999999999999987544
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=2.8e-08 Score=77.84 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=113.3
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRC 171 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la 171 (243)
.+..+...|++++|++.|+.++...|. +.....+.+.+|.++++.++|++|+..|++.++.+|+++ ...+++.+|
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~----s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF----GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 445556678999999999999987762 124455678999999999999999999999999999886 567888899
Q ss_pred HHHHHcC---------------C---HHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHH
Q 026145 172 LARLTMG---------------N---FSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDA 216 (243)
Q Consensus 172 ~~~~~~~---------------~---~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~ 216 (243)
.++..++ + -.+|+..+++.++..|++.. --+..|..|.+.|.|..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~A 193 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVA 193 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 8875554 1 25788999999999998632 13356778999999999
Q ss_pred HHHHHHHHhccCCCchhhhhh
Q 026145 217 AEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 217 A~~~~~~al~~~p~~~~~~~~ 237 (243)
|+.-++.+++..|+.+.....
T Consensus 194 A~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHH
Confidence 999999999999987765543
No 134
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.03 E-value=7.2e-09 Score=90.96 Aligned_cols=111 Identities=22% Similarity=0.196 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
.....++..|+.++-.|++++|.+.+.++|..+|.++ .+|+.+|.+|-.+|+.++++..+-.|-.++|.+++.|..++
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~--~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~la 214 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNP--IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLA 214 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccch--hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 4577888899999999999999999999999999987 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.....+|.+++|.-+|.+|++.+|.+......+
T Consensus 215 dls~~~~~i~qA~~cy~rAI~~~p~n~~~~~er 247 (895)
T KOG2076|consen 215 DLSEQLGNINQARYCYSRAIQANPSNWELIYER 247 (895)
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 999999999999999999999999986665443
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.01 E-value=7.2e-09 Score=71.82 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=87.2
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL 172 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~ 172 (243)
+..+...|++++|.+.+..++...|+ ......+++.+|.++...|++++|+..|++++..+|++. ...++..+|.
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34455677999999999999876651 113366889999999999999999999999999988853 2378999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAY 201 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 201 (243)
++..++++++|+..+++++...|++..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999886543
No 136
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.01 E-value=2.1e-09 Score=88.97 Aligned_cols=74 Identities=19% Similarity=0.104 Sum_probs=66.0
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchH-HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 026145 121 DAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIH-VLYKDRCLARLTMGNFSAALEDVREALELA 194 (243)
Q Consensus 121 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 194 (243)
....+..+.+++++|..++..|+|++|+..|+++++++|++..+ .+|+|+|.+|..+|++++|+.++++++++.
T Consensus 68 ~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 68 SEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 34566889999999999999999999999999999999997511 349999999999999999999999999973
No 137
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.00 E-value=2.1e-08 Score=84.83 Aligned_cols=130 Identities=19% Similarity=0.175 Sum_probs=111.9
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|......|+++.|.+.+.+..+..| .....+...|......|+++.|..++.++.+..|++. ..+...++.+
T Consensus 91 glla~~~g~~~~A~~~l~~~~~~~~-------~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l 162 (409)
T TIGR00540 91 ALLKLAEGDYAKAEKLIAKNADHAA-------EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRI 162 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhcCC-------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHH
Confidence 4444567799999999998887766 5566677889999999999999999999999988863 1244556999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
+...|++++|...+++.++..|+++.++..++.++...|++++|.+.+.+..+..+.+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999774433
No 138
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.5e-09 Score=87.16 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+..|+..|..|...+++++|.++|.++..++|..+ .+|...|..+.-.+.-++|+..|..|-++.|......+.+|
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg--paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG--PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc--HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 5666788889999999999999999999999999976 99999999999999999999999999999999888889999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhccC
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSSTY 243 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i~~ 243 (243)
.-|..+++++-|..+|.+|+.+.|++|-+....+-|+|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY 425 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee
Confidence 99999999999999999999999999988887776654
No 139
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.98 E-value=6.7e-10 Score=91.60 Aligned_cols=110 Identities=26% Similarity=0.439 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVF 208 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 208 (243)
..+-..|+.++..+.|+.|+..|.+||+++|+.. ..+.+++.++++.++|..|+.++.++++.+|....+|+..|.+.
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~ 82 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV 82 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence 3455678888999999999999999999999987 88999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 209 LAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
.+++++.+|...|++...+.|+++.+.+....
T Consensus 83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 99999999999999999999999998876544
No 140
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.98 E-value=1.3e-08 Score=86.83 Aligned_cols=150 Identities=16% Similarity=0.151 Sum_probs=128.0
Q ss_pred CCCCCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC
Q 026145 81 RCGAGPNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF 160 (243)
Q Consensus 81 ~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 160 (243)
.|...++..+. ....+...|+...|..++..++...| +.-..|+..-...+...+++.|..++.++....|.
T Consensus 579 ~~pkae~lwlM-~ake~w~agdv~~ar~il~~af~~~p-------nseeiwlaavKle~en~e~eraR~llakar~~sgT 650 (913)
T KOG0495|consen 579 QCPKAEILWLM-YAKEKWKAGDVPAARVILDQAFEANP-------NSEEIWLAAVKLEFENDELERARDLLAKARSISGT 650 (913)
T ss_pred hCCcchhHHHH-HHHHHHhcCCcHHHHHHHHHHHHhCC-------CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc
Confidence 45555554321 12233445799999999999998888 77788888888888899999999999999998886
Q ss_pred CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 161 GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 161 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
. .+|+..+.....+++.++|+..++++++..|+.+..|..+|+++..+++.+.|.+.|...++.-|..+-+|..+++
T Consensus 651 e---Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLak 727 (913)
T KOG0495|consen 651 E---RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAK 727 (913)
T ss_pred c---hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHH
Confidence 5 6888889999999999999999999999999999999999999999999999999999999999999999988876
Q ss_pred c
Q 026145 241 S 241 (243)
Q Consensus 241 i 241 (243)
+
T Consensus 728 l 728 (913)
T KOG0495|consen 728 L 728 (913)
T ss_pred H
Confidence 5
No 141
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.95 E-value=5.2e-09 Score=77.51 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCH
Q 026145 138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAYICQGDVFLAMDQY 214 (243)
Q Consensus 138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 214 (243)
++-..+|..+...+...++..+.+.....++++|.++..+|++++|+..+++++.+.|+. +.++.++|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344456777777777766666655345788999999999999999999999999987763 45899999999999999
Q ss_pred HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 215 DAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 215 ~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
++|+..+.+++.++|.+...+..++.+
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 999999999999999998887766654
No 142
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.95 E-value=1.6e-09 Score=93.13 Aligned_cols=111 Identities=20% Similarity=0.211 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV 207 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 207 (243)
+.+.+.+|......++|.++...++..++++|-.. ..|+++|.+..++++++.|..+|..++.++|++..+|.+++.+
T Consensus 485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~--~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQL--GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTA 562 (777)
T ss_pred HHHHHhhccccccchhHHHHHHHHHHHhhcCccch--hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHH
Confidence 33444555555667899999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
|...++-.+|...+++|++.+-++...|.++--
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn~~~w~iWENyml 595 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCNYQHWQIWENYML 595 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence 999999999999999999999888888776543
No 143
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.94 E-value=4.3e-08 Score=82.63 Aligned_cols=132 Identities=14% Similarity=0.107 Sum_probs=104.8
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|......|+++.|.+.+.......+ .....+...+......|+++.|..++.++.+.+|++. .......+..
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~-------~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~~~~l~~a~l 162 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAE-------QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-LPVEITRVRI 162 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-HHHHHHHHHH
Confidence 3334446799999988876554432 2233344456666999999999999999999999873 1222345899
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
+...|++++|+..++++.+.+|+++.++..++.+|...|++++|.+.+.+..+..+.++.
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~ 222 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE 222 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999999999999888888877665443
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=2.1e-08 Score=79.18 Aligned_cols=98 Identities=10% Similarity=0.023 Sum_probs=85.7
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHc
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTM 177 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~ 177 (243)
..|++++|+..|+..+...|+ +...+.+++.+|..++..|++++|+..|.+++..+|+++ ..++++.+|.++..+
T Consensus 155 ~~~~y~~Ai~af~~fl~~yP~----s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 155 DKSRQDDAIVAFQNFVKKYPD----STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred hcCCHHHHHHHHHHHHHHCcC----CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 346999999999999988862 123467899999999999999999999999999998864 458899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHH
Q 026145 178 GNFSAALEDVREALELAPNYTEA 200 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~ 200 (243)
|++++|...|+++++..|++..+
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999988654
No 145
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.94 E-value=8.6e-09 Score=76.64 Aligned_cols=99 Identities=24% Similarity=0.230 Sum_probs=82.5
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..+...|++++|...+++++...+++ ...+..+..+|.++...|++++|+..|.+++...|++. .++..+|.
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg~ 114 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDP----NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP--SALNNIAV 114 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH--HHHHHHHH
Confidence 4556677789999999999998765411 12467899999999999999999999999999999976 88999999
Q ss_pred HHHHcCC--------------HHHHHHHHHHHHHhCCCc
Q 026145 173 ARLTMGN--------------FSAALEDVREALELAPNY 197 (243)
Q Consensus 173 ~~~~~~~--------------~~~A~~~~~~al~~~p~~ 197 (243)
++...|+ +++|++.+++++..+|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999887 577777777787777765
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=2.3e-08 Score=80.26 Aligned_cols=134 Identities=19% Similarity=0.161 Sum_probs=100.9
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
.+...++++.|.+.++.....+. +........+++.+..| ++.+|.-.|++.-...+.++ ..++.++.+
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~e-------D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~--~~lng~A~~ 210 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDE-------DSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTP--KLLNGLAVC 210 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSC-------CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SH--HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCH--HHHHHHHHH
Confidence 44567788999999888776654 33333444444544444 68999999999887777766 888899999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCCCchhhhhhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY-DAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
++.+|+|++|.+.+++++..+|++++++.++..+...+|+. +.+.+.+++....+|+++-+..+.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999988 667778888888899888766544
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.6e-08 Score=66.23 Aligned_cols=91 Identities=29% Similarity=0.283 Sum_probs=81.9
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 176 (243)
+...|++++|...++..+...| .....+..+|.++...+++++|+..+++++...|.+. .++..+|.++..
T Consensus 10 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 80 (100)
T cd00189 10 YYKLGDYDEALEYYEKALELDP-------DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA--KAYYNLGLAYYK 80 (100)
T ss_pred HHHHhcHHHHHHHHHHHHhcCC-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch--hHHHHHHHHHHH
Confidence 3446789999999999998876 5557889999999999999999999999999999976 899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 026145 177 MGNFSAALEDVREALELAPN 196 (243)
Q Consensus 177 ~~~~~~A~~~~~~al~~~p~ 196 (243)
.|++++|...++++++.+|.
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999988773
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=2.4e-08 Score=89.89 Aligned_cols=112 Identities=6% Similarity=-0.058 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------
Q 026145 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT------ 198 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------ 198 (243)
+.+..+|..+...+...+++++|+..++.+++..|+.. .+|+.+|.++++.++++++... .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i--~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSI--SALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcce--ehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHH
Confidence 37888999999999999999999999999999999987 9999999999999998887766 6666665555
Q ss_pred -------------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 199 -------------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 199 -------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
.+++.+|.||.++|++++|...|+++++++|+++.+.++++-
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 899999999999999999999999999999999999888764
No 149
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1e-08 Score=88.31 Aligned_cols=122 Identities=15% Similarity=0.101 Sum_probs=115.5
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~ 178 (243)
..++++++.+.++..+..+| .....|+.+|.+..+.++++.|...|...+.++|++. .+|+|++..|..++
T Consensus 497 ~~~~fs~~~~hle~sl~~np-------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~--eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINP-------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA--EAWNNLSTAYIRLK 567 (777)
T ss_pred cchhHHHHHHHHHHHhhcCc-------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch--hhhhhhhHHHHHHh
Confidence 34599999999999999998 8899999999999999999999999999999999988 99999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 179 NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
+-.+|...++++++.+-.++..|.|.-.+....|.+++|+..+.+.+.+..
T Consensus 568 ~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 568 KKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred hhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 999999999999999988999999999999999999999999999987654
No 150
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.89 E-value=1.6e-08 Score=73.57 Aligned_cols=93 Identities=19% Similarity=0.315 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145 144 FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN----------FSAALEDVREALELAPNYTEAYICQGDVFLAMDQ 213 (243)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 213 (243)
|+.|.+.++.....+|.+. +.+++.|.+++.+.+ +++|+.-|++||.++|+..++++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~Da--dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA--DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhH--HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6788899999999999987 999999988887644 4678888999999999999999999999987664
Q ss_pred -----------HHHHHHHHHHHhccCCCchhhhhhh
Q 026145 214 -----------YDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 214 -----------~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
|++|.++|++|...+|++...+..+
T Consensus 85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 85 LTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 7889999999999999987665443
No 151
>PRK15331 chaperone protein SicA; Provisional
Probab=98.87 E-value=4.6e-08 Score=70.45 Aligned_cols=99 Identities=14% Similarity=-0.040 Sum_probs=87.5
Q ss_pred ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145 91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR 170 (243)
Q Consensus 91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 170 (243)
|..+.-+...|++++|..+|+-+...++ .+...|+.+|.++..+++|++|+..|..+..++++++ ...+..
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~-------~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp--~p~f~a 111 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDF-------YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDY--RPVFFT 111 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCc-------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC--CccchH
Confidence 3345555678899999999999888887 7788899999999999999999999999999999988 889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTE 199 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 199 (243)
|.|++.+|+.+.|...|+.++. .|.+..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~ 139 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDES 139 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence 9999999999999999999998 565443
No 152
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=3e-08 Score=73.20 Aligned_cols=114 Identities=22% Similarity=0.156 Sum_probs=96.3
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|.-++..|+++.|..-|..++...| + .........+.+.|.++++.+.++.|+..+.++|+++|.+. .++..+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp-~-~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~--kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCP-S-TSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE--KALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCc-c-ccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH--HHHHHHHH
Confidence 46667778899999999999998886 2 22344555788899999999999999999999999999976 89999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA 210 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 210 (243)
+|-++..|++|+++|.++++.+|....+.-....+--.
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 99999999999999999999999887766655544333
No 153
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.86 E-value=1.8e-08 Score=83.51 Aligned_cols=69 Identities=23% Similarity=0.177 Sum_probs=65.7
Q ss_pred cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 157 LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEA---YICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 157 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.+|+++ .+++++|.+|+.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++.+++++++
T Consensus 70 ~dP~~a--~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTA--EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578876 999999999999999999999999999999999854 999999999999999999999999997
No 154
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.86 E-value=9.9e-09 Score=65.80 Aligned_cols=62 Identities=18% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELA---P----NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.++.++|.+|..+|+|++|+.+|++++.+. + ....++.++|.++..+|++++|+++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555555555555331 1 1133455555555555555555555555544
No 155
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.86 E-value=2.4e-08 Score=85.10 Aligned_cols=135 Identities=17% Similarity=0.174 Sum_probs=108.2
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCC-CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCc-hHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKS-DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGG-IHVL 166 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~-~~~~ 166 (243)
+..|...|+++.|...++.++..-. -........+..+..+|..|...++|.+|+..|++|+.+. ++++ .+.+
T Consensus 206 a~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~ 285 (508)
T KOG1840|consen 206 AEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAAT 285 (508)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 4556778899999999998885500 0112223566666679999999999999999999999873 2332 4688
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALELA--------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+.++|.+|...|+|++|..++++|+++. |.-+..+.+++.++..++++++|+..+++++++.
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999874 2234578889999999999999999999999874
No 156
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.82 E-value=1.1e-07 Score=80.22 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=93.5
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
+..+...|+.+.|.+++++.++..+ +.......+. ...++++++++..++.++.+|+++ ..+..+|.+
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~--------~~~l~~l~~~--l~~~~~~~al~~~e~~lk~~P~~~--~l~l~lgrl 337 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY--------DERLVLLIPR--LKTNNPEQLEKVLRQQIKQHGDTP--LLWSTLGQL 337 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC--------CHHHHHHHhh--ccCCChHHHHHHHHHHHhhCCCCH--HHHHHHHHH
Confidence 3445667788888888888887543 1122222222 244888889999999999999887 888888999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+...++|++|.+.|+++++..|++. .+..++.++.++|+.++|.+.|++++.+.
T Consensus 338 ~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999998888754 46678889999999999999999887754
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.8e-08 Score=76.15 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHH
Q 026145 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---QYDAAEK 219 (243)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~ 219 (243)
+.+..+.-.+..+..+|+|. +-|..+|.+|+.+++++.|...|.+++++.|++++.+..+|.++..+. .-.++..
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQNPGDA--EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 45666777888899999998 999999999999999999999999999999999999999999887654 3567899
Q ss_pred HHHHHhccCCCchhhhhhhhhcc
Q 026145 220 SYSTCLQIDPSIRRSKSFKVSST 242 (243)
Q Consensus 220 ~~~~al~~~p~~~~~~~~~a~i~ 242 (243)
.+++++.+||++..+..+++..+
T Consensus 215 ll~~al~~D~~~iral~lLA~~a 237 (287)
T COG4235 215 LLRQALALDPANIRALSLLAFAA 237 (287)
T ss_pred HHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999998887654
No 158
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.81 E-value=2.8e-08 Score=63.66 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC---C-CCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK---P-FGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA 194 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p-~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 194 (243)
..+.++..+|.++...|+|++|+.+|++++++. + +++ +..++.++|.++..+|++++|++.+++++++.
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 678899999999999999999999999999762 2 222 46889999999999999999999999999763
No 159
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.81 E-value=6.5e-08 Score=87.24 Aligned_cols=123 Identities=7% Similarity=-0.086 Sum_probs=105.4
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------------
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG------------- 162 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------- 162 (243)
.|...++++++.++.+.++...| .....++.+|.++++.+++.+|... .++...+.+.
T Consensus 40 ~~~~~~~~deai~i~~~~l~~~P-------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 40 AYKSENLTDEAKDICEEHLKEHK-------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCC-------cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHH
Confidence 34456699999999999999998 8889999999999988888777665 5555544331
Q ss_pred ----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 163 ----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 163 ----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
...+++.+|.||-++|++++|...|+++++.+|+++.++.++|..|... +.++|+.++.+|+...
T Consensus 111 ~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~ 179 (906)
T PRK14720 111 LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF 179 (906)
T ss_pred hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 0168999999999999999999999999999999999999999999999 9999999999998753
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=4e-07 Score=78.41 Aligned_cols=58 Identities=22% Similarity=0.086 Sum_probs=47.3
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG 162 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 162 (243)
...|++++|++.+......-. +....+-.+|..+.+.|++++|...|...|..+|++.
T Consensus 15 ~e~g~~~~AL~~L~~~~~~I~-------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~ 72 (517)
T PF12569_consen 15 EEAGDYEEALEHLEKNEKQIL-------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY 72 (517)
T ss_pred HHCCCHHHHHHHHHhhhhhCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 345788999998887665555 6677788889999999999999999999999888874
No 161
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=1.3e-07 Score=77.01 Aligned_cols=111 Identities=18% Similarity=0.170 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+..|+-.+..++..+++..|+.+-+++|..+|.+. .++...|..+..+++.++|+-.|+.|..+.|...+.|..+-
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~ 375 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLF 375 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444566667778888899999999999999999987 88888899999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.+|...|++.||...-+.++..-|.+..+..+.
T Consensus 376 hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 376 HSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred HHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 999999999998888888888888887776665
No 162
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.77 E-value=1.2e-07 Score=82.40 Aligned_cols=113 Identities=22% Similarity=0.208 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
....|...+..+...++.++|.....++-.++|... ..|+.+|.++...|.+.+|.+.|..++.++|+++.+...+|.
T Consensus 649 ~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~--~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~ 726 (799)
T KOG4162|consen 649 LQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSA--SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE 726 (799)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhH--HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 455677888899999999999999999999999965 999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHH--HHHHHhccCCCchhhhhhhhhc
Q 026145 207 VFLAMDQYDAAEK--SYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 207 ~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~~a~i 241 (243)
++...|+..-|.. .+..+++++|.++++|..++.|
T Consensus 727 ~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 727 LLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 9999998888887 9999999999999999998876
No 163
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.76 E-value=2.1e-07 Score=65.58 Aligned_cols=105 Identities=19% Similarity=0.120 Sum_probs=87.9
Q ss_pred cCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhH
Q 026145 92 PDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDR 170 (243)
Q Consensus 92 ~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~l 170 (243)
..|......|+++.|++.|+.+....|.. .....+...+|.++++.++|++|+..+++-++++|.++ +..+++.+
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33444456679999999999988777522 24556788999999999999999999999999999886 55789999
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHHhCCCcHHH
Q 026145 171 CLARLTMGN---------------FSAALEDVREALELAPNYTEA 200 (243)
Q Consensus 171 a~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 200 (243)
|.+++.+.. ...|...|++.+...|++..+
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999887 899999999999999988644
No 164
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=1.3e-07 Score=80.75 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=117.0
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..+..+|+-++|.+.....+..++ ...-.|.-+|.++....+|++|+.+|..|+.+.|+|. ..|..++.
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~-------~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~--qilrDlsl 117 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDL-------KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL--QILRDLSL 117 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCc-------ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH--HHHHHHHH
Confidence 56666778899999999999888776 7788999999999999999999999999999999988 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
...++++++.....-.+.++..|.....|+..+.++.-.|++..|...++...+..
T Consensus 118 LQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 118 LQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999888877655
No 165
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.74 E-value=7.1e-08 Score=82.25 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=99.8
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
++.+..+..+..+...| .....+-..|..+...|+-++|......++..++.+. ..|.-+|.++...++|+
T Consensus 22 QYkkgLK~~~~iL~k~~-------eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~--vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 22 QYKKGLKLIKQILKKFP-------EHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH--VCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHhHHHHHHHHHHhCC-------ccchhHHhccchhhcccchHHHHHHHHHHhccCcccc--hhHHHHHHHHhhhhhHH
Confidence 56666666666666665 5666777778888888888888888888888877766 77888888888888888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+|+.+|+.|+++.|+|...|.-++....++++++-....-.+.+++.|.....|.-++
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~A 150 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFA 150 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHH
Confidence 8888888888888888888888888888888888888888888888887766665444
No 166
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.72 E-value=1.9e-08 Score=89.31 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=82.5
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
|..|....+...|.+-|++++..++ .++.++-..+.++.+..+++.|....-.+-+..|...-...|..+|..
T Consensus 499 G~iYrd~~Dm~RA~kCf~KAFeLDa-------tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 499 GQIYRDSDDMKRAKKCFDKAFELDA-------TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-------hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 4444444355566666666666655 445555555555555555555555544433333322112344556677
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
|...+++..|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.++..++|++..+..
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 777777777777777777777777777777777777777777777777777777776655443
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.72 E-value=2.3e-07 Score=74.56 Aligned_cols=137 Identities=22% Similarity=0.178 Sum_probs=102.5
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGG----IHVLYKDR 170 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~----~~~~~~~l 170 (243)
.|... ++++|++.+++++..-. .......-+..+..+|.++... +++++|+++|++|++....+. ....+...
T Consensus 84 ~~k~~-~~~~Ai~~~~~A~~~y~-~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 84 CYKKG-DPDEAIECYEKAIEIYR-EAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHT-THHHHHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhh-CHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 33444 88899999888764321 2222335677899999999998 999999999999998753221 24678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNY-------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
|.++..+|+|++|++.|+++....-++ ...++..+.|+...|+...|...+++....+|.....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 999999999999999999998753221 2356778899999999999999999999999976544
No 168
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.72 E-value=5.5e-07 Score=62.33 Aligned_cols=93 Identities=23% Similarity=0.107 Sum_probs=78.9
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC---CchHHHHHhH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF---GGIHVLYKDR 170 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~l 170 (243)
+..+...|++++|+.+|++++..+. .......++..+|.++...|++++|+..+++++...|+ +. .+...+
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL----~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--~l~~f~ 81 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGL----SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--ALRVFL 81 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH--HHHHHH
Confidence 3445678899999999999997653 12255678999999999999999999999999999888 44 667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 026145 171 CLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~ 192 (243)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.71 E-value=9.4e-07 Score=64.70 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=99.9
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc-cCCCCchHHHHHhHHHHHHHcCCH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE-LKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
+|+....-..+.+... ......+.+|+.+.+.|++.+|...|++++. +..+++ ..+..++...+..+++
T Consensus 71 dP~R~~Rea~~~~~~A--------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~--a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 71 DPERHLREATEELAIA--------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDA--AMLLGLAQAQFAIQEF 140 (251)
T ss_pred ChhHHHHHHHHHHhhc--------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH--HHHHHHHHHHHhhccH
Confidence 4554444444444434 3445677899999999999999999999986 355655 8899999999999999
Q ss_pred HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 181 SAALEDVREALELAPN--YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
..|...+++..+.+|. .++....+|.+|..+|++.+|...|+.++...|+..
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ 194 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ 194 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH
Confidence 9999999999998885 477889999999999999999999999999998754
No 170
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.69 E-value=8.6e-07 Score=63.94 Aligned_cols=114 Identities=18% Similarity=0.143 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY---TEAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~ 201 (243)
..+...+.........+++..+...+++.+..+|+.+ -..+.+.+|.+++..|++++|...|++++...|+. +.+.
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 3455566666666679999999999999999999873 23678889999999999999999999999987654 4588
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 202 ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 202 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
++++.++...|++++|+..++. +.-.+-.+.++..++.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 9999999999999999999966 3333334444444443
No 171
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.5e-07 Score=75.40 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=98.4
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..+...|+.++++..|++..-.+| .....+-..|..+...|++++-..+-...+..+.... .-|+--+...
T Consensus 240 k~~~~~Gdn~~a~~~Fe~~~~~dp-------y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta--~~wfV~~~~l 310 (564)
T KOG1174|consen 240 KCLYYNGDYFQAEDIFSSTLCANP-------DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA--SHWFVHAQLL 310 (564)
T ss_pred hhhhhhcCchHHHHHHHHHhhCCh-------hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch--hhhhhhhhhh
Confidence 444455555666666655555555 5555555555555555565555555555555544333 5566667778
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
+..++|+.|+.+.+++|..+|.+..++...|.++...++.++|+-.|+.|..+.|..-+.+.-
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHH
Confidence 888999999999999999999999999999999999999999999999999999987766643
No 172
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.67 E-value=7.7e-07 Score=75.35 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT-EAYICQG 205 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la 205 (243)
.+......|...+..|+++.|.+...++.+..|++. ..+...|.+...+|+++.|..++.++.+..|++. .+....+
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~--~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV--LNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 444556678888899999999999999999998865 6677779999999999999999999999999875 4666679
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.++...|++++|...+++.++.+|+++.+...+..+
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~ 196 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEA 196 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999988776654
No 173
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=4.5e-08 Score=78.59 Aligned_cols=134 Identities=13% Similarity=0.061 Sum_probs=100.3
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+..+...|++++|++++... .........-.++...++++.|...++..-+.+.+.. -+....++
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~--l~qLa~aw 173 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG------------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI--LTQLAEAW 173 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH--HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcc------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH--HHHHHHHH
Confidence 345566677888888776543 1234455567789999999999999999988887743 23333344
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 173 ARLTMG--NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 173 ~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+.+..| .+.+|...|++.....|.++..+..++.++..+|+|++|.+.+.+++..+|.++++..++..
T Consensus 174 v~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 174 VNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 444555 69999999999877778889999999999999999999999999999999999998776543
No 174
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.63 E-value=7.9e-07 Score=69.06 Aligned_cols=107 Identities=11% Similarity=0.110 Sum_probs=92.0
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCL 172 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~ 172 (243)
+.-+...|++..|..-|...++..| ++...+.++|.+|..++.+|+|++|...|..+++..|+++ .+++++.+|.
T Consensus 148 A~~~~ksgdy~~A~~~F~~fi~~YP----~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 148 ALDLYKSGDYAEAEQAFQAFIKKYP----NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC----CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444567799999999999998876 3346777899999999999999999999999999998875 3589999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
+...+|+-++|-..|+++++..|+...+....
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999987665443
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.60 E-value=9.2e-07 Score=76.54 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHHhcC---HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC--------CHHHHHHHHHHHHHh-
Q 026145 126 LEALALRKRAEAEFEKAN---FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG--------NFSAALEDVREALEL- 193 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~--------~~~~A~~~~~~al~~- 193 (243)
..+..++..|..+...++ ...|+.+|++|++++|++. .++-.++.++.... +...+.+..++++.+
T Consensus 337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a--~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~ 414 (517)
T PRK10153 337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFT--YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALP 414 (517)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcc
Confidence 366677888888876544 8899999999999999976 88887777775542 345666666776664
Q ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 194 -APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 194 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+|.++.++.-+|..+...|++++|...+++++.++|+ ..++..++++
T Consensus 415 ~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~ 462 (517)
T PRK10153 415 ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKV 462 (517)
T ss_pred cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 7778889999999999999999999999999999994 6777777654
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=1.1e-06 Score=73.11 Aligned_cols=102 Identities=19% Similarity=0.125 Sum_probs=92.8
Q ss_pred HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145 136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD 215 (243)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 215 (243)
..+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 3344568999999999999988875 45568999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCchhhhhhhhhcc
Q 026145 216 AAEKSYSTCLQIDPSIRRSKSFKVSST 242 (243)
Q Consensus 216 ~A~~~~~~al~~~p~~~~~~~~~a~i~ 242 (243)
.|+...++++.+.|++-..|..+++++
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 999999999999999999999998874
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=4.4e-07 Score=72.71 Aligned_cols=141 Identities=15% Similarity=0.123 Sum_probs=113.9
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------------CC
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--------------KP 159 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p 159 (243)
+..+.+.|++++|...++-+...+. ..+..+.++|.+++-.|.|.+|...-.++-+. +.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~-------~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDD-------APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCC-------CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCc
Confidence 4456788899999999988876554 55778889999999999999998877665321 11
Q ss_pred CCc----------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 160 FGG----------IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 160 ~~~----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
+.. ..+-...++.+++..-.|++|++.|.+++.-+|+....-..+|.||+++.-|+-+.+.+.-.++..|
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p 216 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP 216 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC
Confidence 000 1133456788888888999999999999999999888889999999999999999999999999999
Q ss_pred Cchhhhhhhhhc
Q 026145 230 SIRRSKSFKVSS 241 (243)
Q Consensus 230 ~~~~~~~~~a~i 241 (243)
+++.+..+++-.
T Consensus 217 dStiA~NLkacn 228 (557)
T KOG3785|consen 217 DSTIAKNLKACN 228 (557)
T ss_pred CcHHHHHHHHHH
Confidence 999998776543
No 178
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.58 E-value=2.1e-06 Score=73.80 Aligned_cols=126 Identities=18% Similarity=0.021 Sum_probs=94.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
.++.|..+|.++.... -....|+.-+.....+++.++|+.+++++++..|+.. .+|.-+|+++-++++.+
T Consensus 633 e~eraR~llakar~~s--------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 633 ELERARDLLAKARSIS--------GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--KLWLMLGQIEEQMENIE 702 (913)
T ss_pred cHHHHHHHHHHHhccC--------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--HHHHHHhHHHHHHHHHH
Confidence 7777777777776555 3455666666766777777788877788887777744 77777788877777777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
.|...|...++.-|+.+..|..++.+-.+.|..-.|...+.++.--+|++...|..
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle 758 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLE 758 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHH
Confidence 77777777777777777777777777777777777777777777777777766643
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.8e-07 Score=82.15 Aligned_cols=126 Identities=17% Similarity=0.014 Sum_probs=107.6
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.|....+++.|..+....-...+ .......|..+|..+.+.+++.+|+..|+.+++.+|.+. ..|..+|.+|.
T Consensus 535 tyae~~~we~a~~I~l~~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~--n~W~gLGeAY~ 607 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICLRAAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY--NLWLGLGEAYP 607 (1238)
T ss_pred HhhccccHHHHHHHHHHHhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH--HHHHHHHHHHH
Confidence 34445588888888554433332 113344577799999999999999999999999999987 99999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..|+|..|+..|.++..++|.+..+.+..+......|+|.+|+..++..+...
T Consensus 608 ~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 608 ESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred hcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887654
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.56 E-value=1.5e-07 Score=53.07 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=24.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
.++..+|..|..+|++++|+..|+++++.+|+++.++..+|
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 34555556666666666666666666666666655555554
No 181
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.1e-05 Score=60.95 Aligned_cols=157 Identities=21% Similarity=0.204 Sum_probs=116.1
Q ss_pred HHHHHHhcCCCcEEEEeeCCCCCC--------CCCCeEEEecCCe---EEEecCCHh-HHHHHHHHHhcCCCCCcchhhH
Q 026145 59 ILETLSSLAPPEVAVKSCGCLGRC--------GAGPNLVALPDGV---VVGHCGTPA-RASEILMVLCGIKSDHDAAKNL 126 (243)
Q Consensus 59 ~~~~l~~~g~~~v~v~~~gc~g~c--------~~~p~~~~~~~g~---~~~~~~~~~-~a~~~l~~~l~~~~~~~~~~~~ 126 (243)
+++.+....-+.+.+.+..|...- ..-|+++.+-+|. .+... .++ ...+.+++++..
T Consensus 64 ~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~-qPesqlr~~ld~~~~~---------- 132 (304)
T COG3118 64 TLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGA-QPESQLRQFLDKVLPA---------- 132 (304)
T ss_pred HHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCC-CcHHHHHHHHHHhcCh----------
Confidence 344444444456888887777632 2457777776663 23333 566 445555665533
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH------------------
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR------------------ 188 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~------------------ 188 (243)
....-+..+......|++.+|...|..++...|++. .+...++.++...|+.+.|...+.
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~--~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS--EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc--hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 233455677788899999999999999999999987 999999999999999977755444
Q ss_pred ----------------HHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 189 ----------------EALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 189 ----------------~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+.+..+|++.++.+.+|..+...|+.++|.+.+-..+..+
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2233478999999999999999999999999988877764
No 182
>PRK11906 transcriptional regulator; Provisional
Probab=98.55 E-value=1.7e-06 Score=72.04 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=99.1
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
+..++.+..++++..++ .++.++..+|.++...++++.|+..|++|+.++|+.+ .+|+..|......|+.+
T Consensus 319 ~~~~a~~~A~rAveld~-------~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A--~~~~~~~~~~~~~G~~~ 389 (458)
T PRK11906 319 AAQKALELLDYVSDITT-------VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA--SLYYYRALVHFHNEKIE 389 (458)
T ss_pred HHHHHHHHHHHHHhcCC-------CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH--HHHHHHHHHHHHcCCHH
Confidence 66788888889999998 8999999999999999999999999999999999976 99999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHhc
Q 026145 182 AALEDVREALELAPNYTEAYICQGDV-FLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 226 (243)
+|.+.++++++++|....+-...-.+ .+-....++|+..|-+-.+
T Consensus 390 ~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 390 EARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 99999999999999876554433333 4445567888888866544
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=1.2e-06 Score=67.41 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=115.7
Q ss_pred CeEEEecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hH
Q 026145 86 PNLVALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IH 164 (243)
Q Consensus 86 p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~ 164 (243)
|...+|..|....+.|++++|++.|+.+....| . +.....+...++..+++.++|++|+...++-+.+.|.++ ..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p-~---s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHP-F---SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C---CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 444455566666778899999999999887765 2 223467788999999999999999999999999999876 45
Q ss_pred HHHHhHHHHHHHcCC--------HHHHHHHHHHHHHhCCCcHH-----------------HHHHHHHHHHHcCCHHHHHH
Q 026145 165 VLYKDRCLARLTMGN--------FSAALEDVREALELAPNYTE-----------------AYICQGDVFLAMDQYDAAEK 219 (243)
Q Consensus 165 ~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~ 219 (243)
.+++..|.+++..-+ -.+|+..+++.+...|++.- -=...|..|.+.|.+..|+.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 677777888764322 35788899999999997631 12345778889999999999
Q ss_pred HHHHHhccCCCchhhhhhhh
Q 026145 220 SYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 220 ~~~~al~~~p~~~~~~~~~a 239 (243)
-++.+++..|+.+.....+.
T Consensus 189 R~~~v~e~y~~t~~~~eaL~ 208 (254)
T COG4105 189 RFEEVLENYPDTSAVREALA 208 (254)
T ss_pred HHHHHHhccccccchHHHHH
Confidence 99999998887766655443
No 184
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.55 E-value=1.6e-06 Score=66.88 Aligned_cols=116 Identities=22% Similarity=0.236 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT---EAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~ 201 (243)
..+..|+..|...+..|+|++|+..|+.+....|-++ ...+...++.++++.++|++|+...++-+++.|.++ .++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 3577899999999999999999999999999988765 357888999999999999999999999999999775 467
Q ss_pred HHHHHHHHHcC--------CHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 202 ICQGDVFLAMD--------QYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 202 ~~la~~~~~~g--------~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.+|.+++..= -..+|+..++..+.-.|++.-+-...+++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i 159 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARI 159 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 78888876432 24678999999999999987665555444
No 185
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.54 E-value=2.1e-07 Score=74.19 Aligned_cols=105 Identities=22% Similarity=0.175 Sum_probs=94.7
Q ss_pred ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145 91 LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDR 170 (243)
Q Consensus 91 ~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 170 (243)
...|..|+..|.+++|++.|.+.+...| .++-.+.++|..|++...|..|...+..|+.++.... .+|..+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P-------~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--KAYSRR 171 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYP-------HNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--KAYSRR 171 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCC-------CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--HHHHHH
Confidence 3467788899999999999999999998 7888899999999999999999999999999998855 999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
+.+...+|...+|-++++.+|++.|++.+..-.+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9999999999999999999999999876544433
No 186
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.51 E-value=7.3e-07 Score=71.66 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=94.3
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDR 170 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~l 170 (243)
..|...+++++|.+.|.++..... ...+....+..+...+.++. ..++++|+..|++|+.+.-... .+..+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~-~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYE-KLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 445566677778777776643221 11222345556666666654 4599999999999998743221 35788999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCC--Cc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 171 CLARLTM-GNFSAALEDVREALELAP--NY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 171 a~~~~~~-~~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
|.+|... +++++|++.|++|+.+.. +. ...+..+|.++..+|+|++|++.|++.....-+
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 9999988 999999999999998742 11 356789999999999999999999999875443
No 187
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.50 E-value=1.4e-07 Score=49.90 Aligned_cols=32 Identities=34% Similarity=0.594 Sum_probs=25.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145 187 VREALELAPNYTEAYICQGDVFLAMDQYDAAE 218 (243)
Q Consensus 187 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 218 (243)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67788888888888888888888888888775
No 188
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.49 E-value=1e-06 Score=66.06 Aligned_cols=102 Identities=19% Similarity=0.120 Sum_probs=94.1
Q ss_pred EecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh
Q 026145 90 ALPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD 169 (243)
Q Consensus 90 ~~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 169 (243)
.+..|+.|...|-.+-|.--|.+++...| ..+..++.+|..+...|+|+.|.+.|+..++++|.+. -+..|
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai~P-------~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~--Ya~lN 138 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAIRP-------DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN--YAHLN 138 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhcCC-------CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch--HHHhc
Confidence 35678899999999999999999999998 8899999999999999999999999999999999976 88999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 026145 170 RCLARLTMGNFSAALEDVREALELAPNYTEA 200 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 200 (243)
+|..++--|+|.-|.+.+.+-...+|++|.-
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 9999999999999999999999999988753
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.48 E-value=5.6e-07 Score=50.73 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
.+++.+|.+|..+|++++|++.|+++++.+|+++.++..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 567778888888888888888888888888888888777665
No 190
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.47 E-value=4.4e-06 Score=72.12 Aligned_cols=101 Identities=22% Similarity=0.127 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
....+++.+|..+...|++++|+++.+++|+..|..+ +.|...|.++-+.|++.+|.+.++.+..+++.+...-...+
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~--ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV--ELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 3456778999999999999999999999999999966 99999999999999999999999999999999988888889
Q ss_pred HHHHHcCCHHHHHHHHHHHhccC
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..+.+.|+.++|.+.+..-...+
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCC
Confidence 99999999999999988776654
No 191
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.46 E-value=7.8e-08 Score=76.40 Aligned_cols=99 Identities=22% Similarity=0.351 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
-....+...+..|.++.|++.|..+|.++|... ..|..++.++++++++..|+.++..++.++|+...-|-..+.+..
T Consensus 116 e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 116 DKKVQASEALNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHHHHHHHHhcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence 344456667788999999999999999999966 999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhccCCC
Q 026145 210 AMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 210 ~~g~~~~A~~~~~~al~~~p~ 230 (243)
.+|+|++|..++..+.+++-+
T Consensus 194 llg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred HhhchHHHHHHHHHHHhcccc
Confidence 999999999999999988743
No 192
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.45 E-value=2.8e-06 Score=61.96 Aligned_cols=94 Identities=18% Similarity=0.060 Sum_probs=70.9
Q ss_pred HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc----------CHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA----------NFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
++.|.+.++.....+| .++..+++-|.++.... -+++|+.-|++||.++|+.. .+++++|.
T Consensus 7 FE~ark~aea~y~~nP-------~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h--dAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNP-------LDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH--DALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-T-------T-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-------HhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH--HHHHHHHH
Confidence 5678888888788887 77888888888876553 35778888999999999966 99999999
Q ss_pred HHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 173 ARLTMGN-----------FSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 173 ~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
+|..++. |++|..+|++|...+|++......|.
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 9987664 78899999999999999865544443
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4.4e-06 Score=70.95 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=103.6
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...+++++|.....+.+...| ++..+.+..-.++++.++|++|+...++-....-.+ ...+..+.|.+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~p-------dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~---~~~fEKAYc~Y 90 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVP-------DDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN---SFFFEKAYCEY 90 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCC-------CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc---hhhHHHHHHHH
Confidence 45667799999999999998887 778888888889999999999995544433222222 34478999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
+++..++|+..++ -.++.+..+....|.+++++|+|++|.+.|+..++.+.++.+..
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~ 147 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEE 147 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHH
Confidence 9999999999998 45677778899999999999999999999999988877665543
No 194
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.37 E-value=8.5e-07 Score=46.92 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=17.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPN 196 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 196 (243)
.+|+++|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.33 E-value=8.8e-06 Score=56.19 Aligned_cols=97 Identities=24% Similarity=0.187 Sum_probs=84.3
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRC 171 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la 171 (243)
|+.....|+.+.|++.|.+++...| ..+.+|++.+..+.-+|+.++|+..+++++++..... -..++..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P-------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAP-------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcc-------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4445566799999999999999998 8899999999999999999999999999999875433 246788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145 172 LARLTMGNFSAALEDVREALELAPNY 197 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~~ 197 (243)
.+|..+|+-+.|...|+.+-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999998876543
No 196
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.32 E-value=1.7e-06 Score=45.78 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 466677777777777777777777777777653
No 197
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.32 E-value=1.6e-05 Score=64.55 Aligned_cols=119 Identities=16% Similarity=0.100 Sum_probs=99.6
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...|+.++|.+++..+++..- +...... .-...-+++..=+...++.++..|+++ ..+..+|..++
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~--------D~~L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~ 339 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQW--------DPRLCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLAL 339 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhcc--------ChhHHHH--HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHH
Confidence 44567799999999999987763 2221111 123467889999999999999999988 99999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
+.+.|.+|...++.+++..| +...+..+|.++.++|+.++|.+..++++.+
T Consensus 340 k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 340 KNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999888 5677889999999999999999999999854
No 198
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.29 E-value=1.9e-06 Score=45.44 Aligned_cols=31 Identities=23% Similarity=0.612 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
+++.+|.++..+|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4444455555555555555555555544444
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.27 E-value=4.9e-05 Score=55.91 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=118.5
Q ss_pred ccCccCHHHHHHHHHh-cCCC-cEEEEeeCCCCCCCCCCeEEE-ecCCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhH
Q 026145 50 TCRRQGSMQILETLSS-LAPP-EVAVKSCGCLGRCGAGPNLVA-LPDGVVVGHCGTPARASEILMVLCGIKSDHDAAKNL 126 (243)
Q Consensus 50 ~c~~~G~~~~~~~l~~-~g~~-~v~v~~~gc~g~c~~~p~~~~-~~~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~ 126 (243)
....+|++.+..+++. +.+. .++- .+. .-...|++.- +-.+......|++.+|...|++++...- ..
T Consensus 53 l~~~R~a~~~~~a~~q~ldP~R~~Re-a~~---~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~f------A~ 122 (251)
T COG4700 53 LGADRHAHTLLMALQQKLDPERHLRE-ATE---ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIF------AH 122 (251)
T ss_pred hcccchhHHHHHHHHHhcChhHHHHH-HHH---HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcccc------CC
Confidence 3455678888887777 3331 1100 000 0112344321 1124445677899999999998874331 14
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
++..+..+++..+..+++..|...+++..+.+|....++....+|.++...|++.+|...|+.++...| .+.+....+.
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e 201 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAE 201 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 577888999999999999999999999999988643336677789999999999999999999999888 5788888999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 026145 207 VFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 207 ~~~~~g~~~~A~~~~~~a 224 (243)
.+.++|+.++|..-+...
T Consensus 202 ~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 202 MLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHhcchhHHHHHHHHH
Confidence 999999888876655443
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.26 E-value=5.3e-06 Score=67.87 Aligned_cols=134 Identities=14% Similarity=-0.019 Sum_probs=102.5
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC----CCchHHHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP----FGGIHVLYK 168 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~~ 168 (243)
.|..|.-.|++++++..-+.-+.... +-.++...-.++.++|+++.-.|+++.|+++|+..+.+.- ...-+...+
T Consensus 201 LGNTyYlLGdf~~ai~~H~~RL~ia~-efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 201 LGNTYYLLGDFDQAIHFHKLRLEIAQ-EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred cCceeeeeccHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 45667778899999987765443321 2223334556788999999999999999999999876532 111236678
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.+|..|.-+++++.|+.++++-+++.. ....+++.+|.++..+|..++|..+..+.+++
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 899999999999999999998776643 23568999999999999999999888777664
No 201
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.24 E-value=1.2e-05 Score=64.72 Aligned_cols=131 Identities=15% Similarity=0.125 Sum_probs=96.8
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
++.-|+.+++-....+. ++ .......+|.+++..|+|++|+..|.-+.+.+.-++ +.+.+++.|++-+|.|.
T Consensus 37 DytGAislLefk~~~~~-EE-----E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~--el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDR-EE-----EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPA--ELGVNLACCKFYLGQYI 108 (557)
T ss_pred cchhHHHHHHHhhccch-hh-----hHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCc--ccchhHHHHHHHHHHHH
Confidence 88899999887665553 11 123334578999999999999999999888655444 89999999999999999
Q ss_pred HHHHHHHHHH--------------HhCC------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 182 AALEDVREAL--------------ELAP------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 182 ~A~~~~~~al--------------~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
+|.....++- +++. +..+-...+|.+++..-.|++|++.|.+.+.-+|+.....
T Consensus 109 eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 109 EAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 9988776542 1111 1122344567777777789999999999999999876665
Q ss_pred hhhhh
Q 026145 236 SFKVS 240 (243)
Q Consensus 236 ~~~a~ 240 (243)
.+.+-
T Consensus 189 Vy~AL 193 (557)
T KOG3785|consen 189 VYMAL 193 (557)
T ss_pred HHHHH
Confidence 55443
No 202
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.24 E-value=9.4e-07 Score=46.69 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=31.3
Q ss_pred HHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHH
Q 026145 150 FLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALE 185 (243)
Q Consensus 150 ~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~ 185 (243)
.|+++|+++|+++ .+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~--~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNA--EAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCH--HHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999988 999999999999999999863
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.23 E-value=8.3e-07 Score=72.44 Aligned_cols=126 Identities=16% Similarity=0.147 Sum_probs=98.6
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHc
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTM 177 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~ 177 (243)
.++.|.++|+.-+.... ...+......++-++|++|+-.|+|++|+..-+.-+.+..+.. ...++.++|.++.-+
T Consensus 170 al~~Av~fy~eNL~l~~-~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 170 ALENAVKFYMENLELSE-KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHH-HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 56677777776554432 2223335566788999999999999999999888887754432 347899999999999
Q ss_pred CCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 178 GNFSAALEDVREALELAP------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
|+++.|+++|.+.+.+.- ..+...+.+|..|.-+.+++.|+.++++-+++.
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998776532 235678899999999999999999999977664
No 204
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=3.1e-05 Score=65.96 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=90.6
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
.+.+.+++|.++.+...... ......+..|.+.++.+..++|+..++ ..++.+. .+....|++++++
T Consensus 57 Iq~~ky~~ALk~ikk~~~~~--------~~~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~--~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 57 IQLDKYEDALKLIKKNGALL--------VINSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDD--KLLELRAQVLYRL 123 (652)
T ss_pred hhhhHHHHHHHHHHhcchhh--------hcchhhHHHHHHHHHcccHHHHHHHHh---cccccch--HHHHHHHHHHHHH
Confidence 45568999997776544322 112233799999999999999999999 3455544 6788899999999
Q ss_pred CCHHHHHHHHHHHHHhCC-------------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 178 GNFSAALEDVREALELAP-------------------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p-------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
++|++|+..|+..++.+. ++.+.+|+.|-++...|+|.+|++.+++++.
T Consensus 124 ~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999998765431 1346789999999999999999999999943
No 205
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=1.8e-05 Score=62.37 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=97.3
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
..+++++++++..-....| .+-..+..+|.+|+...+|..|-..|++.-...|... ...+..+..++..+.
T Consensus 23 d~ry~DaI~~l~s~~Er~p-------~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~--qYrlY~AQSLY~A~i 93 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERSP-------RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE--QYRLYQAQSLYKACI 93 (459)
T ss_pred HhhHHHHHHHHHHHHhcCc-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH--HHHHHHHHHHHHhcc
Confidence 3488999999988777776 6777888999999999999999999999999999854 666667888888888
Q ss_pred HHHHHHHHHHHHH------------------------------hCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 180 FSAALEDVREALE------------------------------LAP--NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 180 ~~~A~~~~~~al~------------------------------~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
+.+|+........ .-| +.+....+.|-++++.|+|++|++-|+.+++.
T Consensus 94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 8877765543221 113 34566777888888888888888888888887
Q ss_pred CCCchhhh
Q 026145 228 DPSIRRSK 235 (243)
Q Consensus 228 ~p~~~~~~ 235 (243)
..-++-+-
T Consensus 174 sGyqpllA 181 (459)
T KOG4340|consen 174 SGYQPLLA 181 (459)
T ss_pred cCCCchhH
Confidence 65554433
No 206
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.19 E-value=5.4e-06 Score=43.66 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=20.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNY 197 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 197 (243)
.+++.+|.+++.+|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 207
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.15 E-value=2.8e-05 Score=70.44 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA 210 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 210 (243)
+..+...+.+.|+.++|.++|+...+..+-.+....|..+...+.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH
Confidence 334444444555555555555554432111111134555556666666666666655543 1223 34456666666777
Q ss_pred cCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 211 MDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 211 ~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.|+++.|...+++.+.+.|++...+..+
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 7777777777777777777765554443
No 208
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3.4e-05 Score=58.82 Aligned_cols=92 Identities=14% Similarity=-0.008 Sum_probs=83.7
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.|..+.....+.+|+..|.+++..+| ..+..|.+.+.++++..+|+.+.....+++++.|+.. .+.+.+|.
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP-------~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v--k~h~flg~ 86 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINP-------TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV--KAHYFLGQ 86 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCC-------CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH--HHHHHHHH
Confidence 45555666699999999999999998 8888999999999999999999999999999999966 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 026145 173 ARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~ 193 (243)
+.+....|++|+..++++..+
T Consensus 87 ~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 87 WLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHhhccccHHHHHHHHHHHH
Confidence 999999999999999999654
No 209
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.13 E-value=3.4e-06 Score=70.16 Aligned_cols=107 Identities=23% Similarity=0.162 Sum_probs=96.5
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~ 175 (243)
.+...++++.|+..+.+++...| +.+..+-+++..+.+.++|..|+..+.+|++.+|... .+|+.+|.+..
T Consensus 13 ~~l~~~~fd~avdlysKaI~ldp-------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~--K~Y~rrg~a~m 83 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIELDP-------NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI--KAYVRRGTAVM 83 (476)
T ss_pred hhcccchHHHHHHHHHHHHhcCC-------cceeeechhhhhheeechhhhHHHHHHhhhhcCchhh--heeeeccHHHH
Confidence 33455599999999999999998 8888888999999999999999999999999999966 99999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 211 (243)
.++++.+|+..|++...+.|+++.+...+..|-...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999888777765443
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.13 E-value=0.00021 Score=51.45 Aligned_cols=96 Identities=24% Similarity=0.188 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------------------hHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------------------IHVLYKDRCLARLTMGNFSAALEDVREA 190 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------------------~~~~~~~la~~~~~~~~~~~A~~~~~~a 190 (243)
+...|......++...++..+.+++.+...+. ...+...++..+...|++++|+..++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34446666677899999999999998753221 1245566777888999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 191 LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 191 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
+..+|.+-.++..+-.+|...|+..+|+..|+++..
T Consensus 89 l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 89 LALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998743
No 211
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00021 Score=55.51 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=70.2
Q ss_pred cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH-HH
Q 026145 142 ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE-KS 220 (243)
Q Consensus 142 ~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~ 220 (243)
+.+.+|.-.|++.-+..|..+ ...+..+.|.+.+++|++|...++.+|..++++++.+.++-.+-..+|+-.++. +.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~--~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTP--LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcccCCCh--HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 457777777777766444444 678888888888888888888888888888888888888888888888765554 55
Q ss_pred HHHHhccCCCchhhhhh
Q 026145 221 YSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 221 ~~~al~~~p~~~~~~~~ 237 (243)
+.+....+|+++-...+
T Consensus 265 l~QLk~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 265 LSQLKLSHPEHPFVKHL 281 (299)
T ss_pred HHHHHhcCCcchHHHHH
Confidence 66666677777665543
No 212
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=8.7e-05 Score=57.52 Aligned_cols=130 Identities=15% Similarity=0.066 Sum_probs=102.7
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+..|.+.+++++|.+..... ....+.-.--.++.+..+.+-|....++..+++.+. .+..+|.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~------------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~----tLtQLA~ 177 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLG------------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA----TLTQLAQ 177 (299)
T ss_pred hhHHhhcCCChHHHHHHHhcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH----HHHHHHH
Confidence 456777888999999887762 223334444677888999999999999999888763 3444555
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 173 ARLT----MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 173 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.+.. -+.+.+|.-.|++.-...|..+.....++.|...+|+|++|...++.++.-++++++...++
T Consensus 178 awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 178 AWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 4443 34689999999998876777899999999999999999999999999999999999887654
No 213
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.10 E-value=8.2e-05 Score=69.75 Aligned_cols=118 Identities=14% Similarity=0.115 Sum_probs=55.4
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHHhHHHHHH
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLARL 175 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~la~~~~ 175 (243)
.+.|++++|.++|+.....+.. .+...|..+...|.+.|++++|+..|.+.... .|+. ..|..+...+.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~---~TynsLI~a~~ 660 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIK------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE---VFFSALVDVAG 660 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Confidence 3445555555555554433310 12234444445555555555555555554433 2321 34444444455
Q ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 176 TMGNFSAALEDVREALELA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|.+.|++.
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5555555555555544432 123344455555555555555555555544
No 214
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.09 E-value=0.0001 Score=63.49 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=99.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCC
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGN 179 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~ 179 (243)
..+.+.++++......| +.+-.++..|..+...|+.++|++.|++++....+-. -.-.++.++.++..+.+
T Consensus 248 ~~~~a~~lL~~~~~~yP-------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~ 320 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYP-------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD 320 (468)
T ss_pred CHHHHHHHHHHHHHhCC-------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch
Confidence 78889999999998888 7888899999999999999999999999986433211 13578899999999999
Q ss_pred HHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCH-------HHHHHHHHHHhccC
Q 026145 180 FSAALEDVREALELAPNY-TEAYICQGDVFLAMDQY-------DAAEKSYSTCLQID 228 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~-------~~A~~~~~~al~~~ 228 (243)
|++|...+.+..+.+.-+ ....+..|.|+...++. ++|.+.+.++-.+-
T Consensus 321 w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 321 WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999865432 33556679999999999 88888888776543
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=5.9e-05 Score=58.44 Aligned_cols=126 Identities=14% Similarity=0.160 Sum_probs=101.7
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC----CCCchHHHHHhHHHHHH
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK----PFGGIHVLYKDRCLARL 175 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~ 175 (243)
.+.+.-....+.+.++.+| ...+.....+|...++.||.+.|..+|+..-+.. .-...-.+..+.+.++.
T Consensus 190 ~kEy~iS~d~~~~vi~~~~------e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~l 263 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYP------EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHL 263 (366)
T ss_pred chhhhhhHHHHHHHHHhCC------cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhee
Confidence 3355556666677666553 1556677888999999999999999999554322 11111257778899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 176 TMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
-.++|..|...+.+++..+|.++.+..+.|.|+..+|+..+|++.+..++.+.|..
T Consensus 264 g~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 264 GQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred cccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999964
No 216
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.06 E-value=0.00011 Score=69.00 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=61.4
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc----cCCCCchHHHHHhHHHH
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIE----LKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~~~la~~ 173 (243)
.+.|++++|.++|+.....+.. .+...|..+...+.+.|++++|.+.|.+... +.|+. ..|..+...
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~------PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~---vTynaLI~a 588 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVK------PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH---ITVGALMKA 588 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHH
Confidence 3445555555555544322210 1233455555555555555555555555543 23332 345555555
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 174 RLTMGNFSAALEDVREALELA-PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
|.+.|++++|.+.|++..+.+ +.+...|..+...|.+.|++++|...|.+..+
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555666666666665555543 23444555555555556666666655555544
No 217
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.05 E-value=0.00035 Score=57.05 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=103.2
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|++.+|.+.+.+.-+..+ ....++..-+...-+.|+++.|-.+..++-+..+++ ...+...++..+...
T Consensus 95 l~eG~~~qAEkl~~rnae~~e-------~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~ 166 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGE-------QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNR 166 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCc-------chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhC
Confidence 346799999999988766664 556677777888889999999999999999985555 235677889999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
|+++.|.....++++..|.++.+......+|...|+|.+....+.+.-+-
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka 216 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA 216 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999988777665543
No 218
>PLN03077 Protein ECB2; Provisional
Probab=98.04 E-value=5.6e-05 Score=70.12 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=51.8
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--CCCCchHHHHHhHHHHH
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL--KPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~la~~~ 174 (243)
|.+.|+.++|.++|+.. . .+...|..+...|.+.|+.++|++.|++..+. .|+. ..|..+-..+
T Consensus 534 y~k~G~~~~A~~~f~~~---~--------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~---~T~~~ll~a~ 599 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---E--------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE---VTFISLLCAC 599 (857)
T ss_pred HHHcCCHHHHHHHHHhc---C--------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc---ccHHHHHHHH
Confidence 34445555555555443 1 22334555555555555555555555554432 2332 2333333444
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145 175 LTMGNFSAALEDVREALELAP--NYTEAYICQGDVFLAMDQYDAAEKSYST 223 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~ 223 (243)
.+.|++++|.+.|+...+..+ .+...|..+..++.+.|++++|.+.+++
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455555555555554442211 1223444444555555555555444443
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.04 E-value=0.00018 Score=57.80 Aligned_cols=127 Identities=9% Similarity=0.013 Sum_probs=98.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE-KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
..+.|..+|.++..... .....|...|..-+. .++.+.|...|+.+++..|.+. .+|......+...++.
T Consensus 16 g~~~aR~vF~~a~~~~~-------~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~--~~~~~Y~~~l~~~~d~ 86 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKR-------CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP--DFWLEYLDFLIKLNDI 86 (280)
T ss_dssp HHHHHHHHHHHHHCCCC-------S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHTT-H
T ss_pred ChHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhCcH
Confidence 46788889999886554 455677777777555 5677779999999999999987 8888888999999999
Q ss_pred HHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 181 SAALEDVREALELAPNYT---EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
+.|...|++++..-|... ..|......-...|+.+......+++.+..|++......
T Consensus 87 ~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 87 NNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999999999998766554 577777788888999999999999999988886655543
No 220
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.03 E-value=5.5e-05 Score=68.59 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
.|..+...+.+.|++++|.+.+++. ...|+. ..|..+...+...|+++.|...+++.+.+.|++...|..+..+|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~---~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA-PFKPTV---NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 4666778889999999999999874 344543 678889899999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHhcc
Q 026145 210 AMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 210 ~~g~~~~A~~~~~~al~~ 227 (243)
+.|++++|.+.+++..+.
T Consensus 540 ~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRK 557 (697)
T ss_pred hCCCHHHHHHHHHHHHHc
Confidence 999999999999887654
No 221
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.00 E-value=0.00058 Score=51.61 Aligned_cols=94 Identities=28% Similarity=0.450 Sum_probs=50.7
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCH
Q 026145 137 AEFEKANFSEADGFLSQAIELKPF-GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN-YTEAYICQGDVFLAMDQY 214 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~ 214 (243)
.+...++++.|...|.+++...|. ......+..++..+...++++.|+..+.+++...+. ....+..++..+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 455555566665555555554441 112234444444455555555555555555555555 455555555555555555
Q ss_pred HHHHHHHHHHhccCCC
Q 026145 215 DAAEKSYSTCLQIDPS 230 (243)
Q Consensus 215 ~~A~~~~~~al~~~p~ 230 (243)
++|...+..++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 219 EEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHHHHHHHhhCcc
Confidence 5555555555555554
No 222
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.99 E-value=0.00073 Score=51.02 Aligned_cols=131 Identities=24% Similarity=0.261 Sum_probs=103.7
Q ss_pred EEecCCHhHHHHHHHHHhc--CCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH-H
Q 026145 97 VGHCGTPARASEILMVLCG--IKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL-A 173 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~-~ 173 (243)
+...+....+...+..... ..+ .....+...+......+++..++..+.+++...+.+. ......+. +
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 139 (291)
T COG0457 69 LLKLGRLEEALELLEKALELELLP-------NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD--LAEALLALGA 139 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhhhcc-------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc--hHHHHHHHHH
Confidence 3445567777777776664 333 6677888899999999999999999999999888764 45555566 8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-chhhhh
Q 026145 174 RLTMGNFSAALEDVREALELAP---NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS-IRRSKS 236 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~ 236 (243)
+...++++.|...+.+++...| .....+...+..+...+++++|+..+.+++...+. ....+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 9999999999999999988777 45667777777788999999999999999999888 344433
No 223
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.94 E-value=0.00058 Score=50.69 Aligned_cols=104 Identities=23% Similarity=0.222 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-TEAYICQG 205 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la 205 (243)
..+...+|..++..+++++|+..++.++....+.. -.-+-.+++.+...+|.+++|+..++..- ++.+ +.....+|
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrG 166 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRG 166 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhh
Confidence 34566789999999999999999999997654432 23456788999999999999999998753 2333 23456789
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
.++...|+-++|...|.+++..+++.+.
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHccCChHH
Confidence 9999999999999999999999855443
No 224
>PLN03077 Protein ECB2; Provisional
Probab=97.91 E-value=0.00023 Score=66.13 Aligned_cols=132 Identities=9% Similarity=0.019 Sum_probs=60.3
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 176 (243)
|...|+.++|.++|++....+..| +...+..+-..+.+.|++++|..+|+...+..+-.+....|..+...+.+
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~P------d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNP------DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR 637 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCC------CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 445556666666666554332211 11223333344555555666665555554222111111345555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
.|++++|.+.+++. ...|+ +..|..+-.++...++.+.+....+++++++|++...+.
T Consensus 638 ~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ 695 (857)
T PLN03077 638 AGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI 695 (857)
T ss_pred CCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH
Confidence 55555555555442 12332 333444433444444444444444444555554444443
No 225
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=3.2e-05 Score=61.61 Aligned_cols=98 Identities=23% Similarity=0.168 Sum_probs=85.5
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
+|..|....++.+|...|...++... .+...++..|.++|-+.+..|+|..|+..+.+++.++|.+. .+++.-|.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc---~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~--Ka~~R~Ak 161 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKC---ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL--KAYIRGAK 161 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcC---CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh--hhhhhhhH
Confidence 46667777799999999999886543 33447788899999999999999999999999999999988 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 026145 173 ARLTMGNFSAALEDVREALELAP 195 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p 195 (243)
|++.+.++.+|..+++..+.++.
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhH
Confidence 99999999999999998877654
No 226
>PRK10941 hypothetical protein; Provisional
Probab=97.87 E-value=0.00015 Score=57.46 Aligned_cols=77 Identities=17% Similarity=0.092 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+.+.++-..+.+.++++.|+...+..+.+.|+++ .-+..+|.+|.++|.+..|..+++..++..|+++.+-.-..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp--~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP--YEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 334455555566666777777777777777777665 55666677777777777777777777776666665544433
No 227
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.00073 Score=56.68 Aligned_cols=123 Identities=17% Similarity=0.155 Sum_probs=100.8
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNF 180 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~ 180 (243)
.+.+.+.++++..+..-| ..+..-+..|...|.-..++.+...|...+-.||..-|.+ ..+-..-..-.+++++
T Consensus 380 ed~ertr~vyq~~l~lIP---HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~---KlFk~YIelElqL~ef 453 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIP---HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD---KLFKGYIELELQLREF 453 (677)
T ss_pred hhHHHHHHHHHHHHhhcC---cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch---hHHHHHHHHHHHHhhH
Confidence 377888899998888776 3334566778888888888899999999999999998887 3555555666788899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 181 SAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
+.....|++-|+-.|.+-.+|...|..-..+|+.+.|...|.-|+....
T Consensus 454 DRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 454 DRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999999888888887654
No 228
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.86 E-value=0.00034 Score=62.52 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=100.1
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.+++.+|.....+.+...| +...+....|..+.+.|+.++|...++..-...+++. ..+..+-.||..+++
T Consensus 22 ~~qfkkal~~~~kllkk~P-------n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~--~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHP-------NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD--LTLQFLQNVYRDLGK 92 (932)
T ss_pred hHHHHHHHHHHHHHHHHCC-------CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch--HHHHHHHHHHHHHhh
Confidence 3478889988999998888 7777777889999999999999977777666667765 778888899999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
+++|...|++++..+|+ -+....+-.+|.+.+.|.+-.+.--+..+..|+++
T Consensus 93 ~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998 78888888888888888776555555555666654
No 229
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.86 E-value=2.8e-05 Score=40.90 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=15.6
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAP 195 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 195 (243)
+|+.+|.++..+|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 230
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00046 Score=55.43 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-MGNFSAALEDVREALELAPNYTEAYICQGDVF 208 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 208 (243)
+|....+...+.+..+.|...|.+|++..+... .+|...|.+-+. .++.+.|...|+.+++..|.+...|......+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 455566666777779999999999996655544 889999999777 56777799999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHhccCCCch
Q 026145 209 LAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 209 ~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
...|+.+.|...|++++..-|...
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEK 104 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchh
Confidence 999999999999999999877665
No 231
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.85 E-value=0.00057 Score=63.87 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=96.8
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRC 171 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la 171 (243)
.+...|+++++...++.++...+ .........++..+|..+...|++++|...+.+++....... ...++.++|
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELP--LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34457799999999998876432 111222345667888899999999999999999987643221 224567789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 172 LARLTMGNFSAALEDVREALELAPN--------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++.+.
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 9999999999999999998875221 22345677888889999999999999887763
No 232
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.82 E-value=5.5e-05 Score=44.08 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=16.8
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 202 (243)
++.+|..++++|+|++|..+.+.+|++.|++..+..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 344455555555555555555555555555544433
No 233
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.80 E-value=5.3e-05 Score=39.79 Aligned_cols=32 Identities=25% Similarity=0.624 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
.+|+.+|.+|..+|++++|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35666666666666666666666666666663
No 234
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.78 E-value=3.8e-05 Score=65.56 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=93.4
Q ss_pred HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q 026145 135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQY 214 (243)
Q Consensus 135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 214 (243)
|....-.|+...|+..+..|+...|... .....+++.++.+-+-..+|-..+.+++.++...+-.++.+|.++..+.+.
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~-~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQ-DVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhh-cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 3334458999999999999999999753 245778999999999999999999999999988888999999999999999
Q ss_pred HHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 215 DAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 215 ~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.|++.|++|+..+|+++.....+.+|
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999988777665
No 235
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.00066 Score=54.56 Aligned_cols=118 Identities=13% Similarity=0.002 Sum_probs=86.6
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCCCch-HHHHHhHHHHHHHc
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-KPFGGI-HVLYKDRCLARLTM 177 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~-~~~~~~la~~~~~~ 177 (243)
.|+..+|-...++++...| .+..++..--..++..|+...-...+++.+.. +|+-+. ..+.--++.++...
T Consensus 116 ~g~~h~a~~~wdklL~d~P-------tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYP-------TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred cccccHHHHHHHHHHHhCc-------hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 3455556566667776666 55666666666777788888888888887766 555431 12222347777889
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
|-|++|.+..+++++++|.+..+...++-++...+++.++.++..+-
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 99999999999999999999888888898999889988888877653
No 236
>PF06999 Suc_Fer-like: Sucrase/ferredoxin-like; InterPro: IPR009737 This family contains a number of bacterial and eukaryotic proteins approximately 400 residues long that resemble ferredoxin and appear to have sucrolytic activity [].
Probab=97.74 E-value=0.00029 Score=54.87 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=60.2
Q ss_pred CCcEEEEccCC----ccCccC---HHHHHHHHHhcCCCcEEEEeeCCCCCCCCCCeEEEe----cCCeEEEecCCHhHHH
Q 026145 39 ELKELRVCTNR----TCRRQG---SMQILETLSSLAPPEVAVKSCGCLGRCGAGPNLVAL----PDGVVVGHCGTPARAS 107 (243)
Q Consensus 39 ~~~~i~vC~~~----~c~~~G---~~~~~~~l~~~g~~~v~v~~~gc~g~c~~~p~~~~~----~~g~~~~~~~~~~~a~ 107 (243)
.+..|+||+.. +|...| ..++-+.+.+.++....|-.+..+|.+..++++++| +.|.||..+ +++++.
T Consensus 131 ~~~~iLVCtHg~RD~rCg~~Gp~l~~~l~~~~~~~~l~~~~V~~iSHiGGHkfAgNvIiy~~~~p~g~wyGrv-~p~~v~ 209 (230)
T PF06999_consen 131 DKPLILVCTHGKRDKRCGILGPPLARELEKELRERGLSRDRVWEISHIGGHKFAGNVIIYSKPKPDGIWYGRV-TPEDVE 209 (230)
T ss_pred CCCEEEEcCCCCcCCchhcccHHHHHHHHHHhhhcCCccceEEEecccccceecCeEEEEecCCCcEEEEEee-CHHHHH
Confidence 45789999988 777775 334444444466654558899999999999999999 999999999 999999
Q ss_pred HHHHHHh
Q 026145 108 EILMVLC 114 (243)
Q Consensus 108 ~~l~~~l 114 (243)
.+++..+
T Consensus 210 ~iv~~t~ 216 (230)
T PF06999_consen 210 GIVDATI 216 (230)
T ss_pred HHHHHHH
Confidence 9999833
No 237
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.74 E-value=0.00081 Score=62.91 Aligned_cols=105 Identities=15% Similarity=0.020 Sum_probs=75.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHH
Q 026145 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLA 210 (243)
Q Consensus 133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 210 (243)
.+..+|.+.+.+++|.++|+..++..-+.. ..|..++..+++..+-++|-..+.+|++.-|. +.+.....|++-++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTR--KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchh--hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 344556666777777777777776666543 67777777777777777777777777777776 56666777777777
Q ss_pred cCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 211 MDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 211 ~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
.|+.+.+...|.-.+.-+|.-.++|..+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYi 1641 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYI 1641 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHH
Confidence 77777777777777777777777776554
No 238
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.73 E-value=0.00011 Score=61.47 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHh-hccCC------CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQA-IELKP------FGGIHVLYKDRCLARLTMGNFSAALEDVREALEL----- 193 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~~p------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----- 193 (243)
..+.+++...+..+-.|+|..|.+.+... +...| +-....+|+|+|.++++++.|..+..+|.+|++.
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 45667888899999999999999887653 22222 2112357899999999999999999999999961
Q ss_pred ----CC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 194 ----AP---------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 194 ----~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.| ..-+..++.|..|...|+.-.|.+.|.++....-.+|..|..++.+
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc 378 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC 378 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 12 2356899999999999999999999999999999999999888764
No 239
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.73 E-value=2.9e-05 Score=62.12 Aligned_cols=89 Identities=25% Similarity=0.158 Sum_probs=81.5
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
...|.+++|++.+..++..+| ..+..+-.++.++.+.+.+..|+..|..++.++|+.. .-|-.++.+...+
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-------~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa--~~ykfrg~A~rll 195 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-------PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSA--KGYKFRGYAERLL 195 (377)
T ss_pred hcCcchhhhhcccccccccCC-------chhhhcccccceeeeccCCchhhhhhhhhhccCcccc--cccchhhHHHHHh
Confidence 455678999999999999998 7888899999999999999999999999999999976 8889999999999
Q ss_pred CCHHHHHHHHHHHHHhCC
Q 026145 178 GNFSAALEDVREALELAP 195 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p 195 (243)
|+|++|..++..+.+++-
T Consensus 196 g~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 196 GNWEEAAHDLALACKLDY 213 (377)
T ss_pred hchHHHHHHHHHHHhccc
Confidence 999999999999998864
No 240
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.71 E-value=0.00078 Score=62.97 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=100.2
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-----c-hHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-----G-IHVLYK 168 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~-~~~~~~ 168 (243)
..+...|+++.|...+.+++.... ...........+..+|.++...|++++|...+.+++...... . ....+.
T Consensus 499 ~~~~~~G~~~~A~~~~~~al~~~~-~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 577 (903)
T PRK04841 499 EVHHCKGELARALAMMQQTEQMAR-QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLR 577 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHh-hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 344567899999999988775432 111222345577888999999999999999999998763211 1 123456
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPN-----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.+|.++...|++++|...+++++..... ...++..+|.++...|++++|...+.++..+.
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999999876321 34567778999999999999999999997753
No 241
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00051 Score=52.79 Aligned_cols=109 Identities=18% Similarity=0.127 Sum_probs=86.5
Q ss_pred ecCCeEEEecCCHhHHHHHHHHHh--------cCCCCCcch---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC
Q 026145 91 LPDGVVVGHCGTPARASEILMVLC--------GIKSDHDAA---KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP 159 (243)
Q Consensus 91 ~~~g~~~~~~~~~~~a~~~l~~~l--------~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 159 (243)
...|.-++..|++.+|..-|..++ +..|...+. .......+.+...++...|+|-++++.....+..+|
T Consensus 182 ~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~ 261 (329)
T KOG0545|consen 182 HQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP 261 (329)
T ss_pred HHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence 446777778888888888777654 222211111 223445677889999999999999999999999999
Q ss_pred CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145 160 FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY 201 (243)
Q Consensus 160 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 201 (243)
.+. .+|+.+|.++...=+.++|..++.++|+++|.-..+.
T Consensus 262 ~nv--KA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvV 301 (329)
T KOG0545|consen 262 GNV--KAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVV 301 (329)
T ss_pred chH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHH
Confidence 987 9999999999999999999999999999999765443
No 242
>PRK10941 hypothetical protein; Provisional
Probab=97.70 E-value=0.00096 Score=52.95 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=72.7
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.....++=.++.+.++++.|+.+.+..+.+.|+++.-+.-+|.+|.++|.+..|...++..++..|+++.+.....++
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999999999999999999999999999987766554
No 243
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.00027 Score=55.89 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145 137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA 216 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 216 (243)
.+.+..+|.+|++....-.+.+|.+. ..+..+|.||+...+|..|..+|++.-.+.|......+.-+..+++.+.+.+
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~r--AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSR--AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHH
Confidence 34778899999999999999999876 7899999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHhc
Q 026145 217 AEKSYSTCLQ 226 (243)
Q Consensus 217 A~~~~~~al~ 226 (243)
|+........
T Consensus 97 ALrV~~~~~D 106 (459)
T KOG4340|consen 97 ALRVAFLLLD 106 (459)
T ss_pred HHHHHHHhcC
Confidence 9887765544
No 244
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0012 Score=50.49 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=98.8
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHhhccCCCCc----hHHHHH
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-ANFSEADGFLSQAIELKPFGG----IHVLYK 168 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~~----~~~~~~ 168 (243)
+..|... ++++|...++.++.... ....=..-+.....+|.+|-.. .++++|+.+|+++-+....+. -...+.
T Consensus 81 ~~cykk~-~~~eAv~cL~~aieIyt-~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~l 158 (288)
T KOG1586|consen 81 ANCYKKV-DPEEAVNCLEKAIEIYT-DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLL 158 (288)
T ss_pred HHHhhcc-ChHHHHHHHHHHHHHHH-hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHH
Confidence 3455666 89888888887764332 0000112344556788888765 899999999999987754331 113445
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPNYT-------EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
.-+..-..+++|.+|+..|+++....-++. ..++.-|.|+....+.-.+...+++...++|.....+
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 556666788999999999999887554442 3466778888888999899999999999999876554
No 245
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.66 E-value=9.6e-05 Score=38.39 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
+++++|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 246
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.65 E-value=0.00067 Score=63.42 Aligned_cols=131 Identities=12% Similarity=0.103 Sum_probs=114.5
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC--CchHHHHHhHHHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF--GGIHVLYKDRCLA 173 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~la~~ 173 (243)
.|...+.+++|.++++..++... +....|...|..++++.+-+.|...+.+|+..-|. +. .+....|++
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~-------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv--~~IskfAqL 1609 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFG-------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV--EFISKFAQL 1609 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhc-------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH--HHHHHHHHH
Confidence 45566688999999998887664 67889999999999999999999999999999987 55 777788999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
-++.|+.+.+...|+-.+..+|...+.|.-....-.+.|+.+-....|++++.+.=.-..++
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99999999999999999999999999999999999999999999999999998764444443
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.64 E-value=0.00015 Score=58.62 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=106.3
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------hH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------IH 164 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~ 164 (243)
-+..+...+.++++.+.|+.+++... ...+.....+.+..+|..+....|+++|+.+..+|.++..... ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~-~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAH-NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhh-ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556667789999999999886553 3344445667888999999999999999999999987743211 13
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELA------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.+++.++..+..+|+..+|.++.+++.++. |.......-+|.+|...|+.+.|..-|++|....
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 567788999999999999999999988764 3345667789999999999999999998887643
No 248
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.0009 Score=52.07 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=94.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC-CCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC------Cc
Q 026145 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP------NY 197 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~ 197 (243)
.......+.+..++...++|.-.+..+++.++.+| .++ .....+|.+.++.|+.+.|..+++++-+.+. ..
T Consensus 174 KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p--~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 174 KRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP--QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh
Confidence 34455667778888899999999999999999984 544 7888899999999999999999996654332 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
.-...+.+.+|...+++.+|...+.+++..||.++.+-...+-|
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc 295 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC 295 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence 44677788888999999999999999999999999887766543
No 249
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.59 E-value=0.00061 Score=60.95 Aligned_cols=93 Identities=17% Similarity=0.149 Sum_probs=84.0
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145 137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA 216 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 216 (243)
.....+++.+|+....+.++..|+.. .+...-|..+.++|+.++|...++..-...+++...+..+-.+|..++++++
T Consensus 18 d~ld~~qfkkal~~~~kllkk~Pn~~--~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKKHPNAL--YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 44678899999999999999999976 7777789999999999999988887777778888899999999999999999
Q ss_pred HHHHHHHHhccCCCc
Q 026145 217 AEKSYSTCLQIDPSI 231 (243)
Q Consensus 217 A~~~~~~al~~~p~~ 231 (243)
|...|++++..+|+.
T Consensus 96 ~~~~Ye~~~~~~P~e 110 (932)
T KOG2053|consen 96 AVHLYERANQKYPSE 110 (932)
T ss_pred HHHHHHHHHhhCCcH
Confidence 999999999999983
No 250
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.58 E-value=0.0016 Score=56.00 Aligned_cols=116 Identities=21% Similarity=0.158 Sum_probs=96.1
Q ss_pred CCCCeEEEec-CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC
Q 026145 83 GAGPNLVALP-DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG 161 (243)
Q Consensus 83 ~~~p~~~~~~-~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 161 (243)
..+|..++.. .|.+...+|++..|.+.+..++...|. ..--.+.++|+++.+.+-..+|-.++.+++.+....
T Consensus 602 ~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~------~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se 675 (886)
T KOG4507|consen 602 PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPL------QQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSE 675 (886)
T ss_pred CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChh------hhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC
Confidence 3577766544 467777889999999999999877761 233357789999999999999999999999998776
Q ss_pred chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 162 GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 162 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
+ -.++.+|.+++.+.+.+.|++.++.|++.+|+++..-..+-.
T Consensus 676 p--l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 676 P--LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred c--hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 6 788889999999999999999999999999998876554443
No 251
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.00036 Score=59.15 Aligned_cols=103 Identities=19% Similarity=0.138 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG---NFSAALEDVREALELAPNYTEAYIC 203 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~ 203 (243)
.+...+.-|+..+....+..|+..|.+++...|... ..+.+++.++++.+ +--.|+.+...+++++|....+++.
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~--~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~ 450 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI--YLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFR 450 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh--HHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHH
Confidence 344455566666677788999999999999999976 88999998888754 5567888999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
|+.++..++++.+|++....+....|.+
T Consensus 451 la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 451 LARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 9999999999999999888777777743
No 252
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.57 E-value=0.00041 Score=55.10 Aligned_cols=80 Identities=19% Similarity=0.184 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
..+..-...|....+.|+.++|..+|+.|+.++|+++ +++..+|...-..++.-+|-.+|-+|+.++|.+.+++.+++
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p--~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP--QILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH--HHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 4455555667777889999999999999999999988 99999999999999999999999999999999999998876
Q ss_pred HH
Q 026145 206 DV 207 (243)
Q Consensus 206 ~~ 207 (243)
..
T Consensus 192 RT 193 (472)
T KOG3824|consen 192 RT 193 (472)
T ss_pred cc
Confidence 43
No 253
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.56 E-value=0.0002 Score=37.10 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAPN 196 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 196 (243)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4555666666666666666666666666654
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.54 E-value=0.0044 Score=53.49 Aligned_cols=141 Identities=13% Similarity=0.134 Sum_probs=100.6
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHH-HH----HhcCHHHHHHHHHHhhccCCCCchHHHHHhH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEA-EF----EKANFSEADGFLSQAIELKPFGGIHVLYKDR 170 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~-~~----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 170 (243)
+.+..|+-+...+.+..+..... ....-....-..+..... +. ...+.+.|.+.+.......|+.. -..+..
T Consensus 197 ~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~--lfl~~~ 273 (468)
T PF10300_consen 197 FVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA--LFLFFE 273 (468)
T ss_pred hcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH--HHHHHH
Confidence 34556789999999988765331 111111111111111111 11 24577889999999999999976 778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNY----TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
|.++...|+.++|++.+++++...... .-.++.++.++..+++|++|...+.+..+.+.-+...+.+.+
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 999999999999999999988544333 346889999999999999999999999998766655555443
No 255
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.0013 Score=55.48 Aligned_cols=93 Identities=10% Similarity=0.020 Sum_probs=81.4
Q ss_pred HHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHH
Q 026145 145 SEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ-YDAAEKSYST 223 (243)
Q Consensus 145 ~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 223 (243)
..-+..|+.|+...+.|. ..|......-.+.+.+.+--..|.+++..+|++++.|..-|...+..+. .+.|.+.+.+
T Consensus 88 ~rIv~lyr~at~rf~~D~--~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDV--KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 455678999999999887 8888876666677779999999999999999999999999999888886 9999999999
Q ss_pred HhccCCCchhhhhhhh
Q 026145 224 CLQIDPSIRRSKSFKV 239 (243)
Q Consensus 224 al~~~p~~~~~~~~~a 239 (243)
+++.+|+++..|.-+-
T Consensus 166 gLR~npdsp~Lw~eyf 181 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKEYF 181 (568)
T ss_pred HhhcCCCChHHHHHHH
Confidence 9999999999986543
No 256
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.51 E-value=9.1e-05 Score=39.58 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=12.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 201 YICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 201 ~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
+.++|.+|..+|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 257
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.50 E-value=0.0049 Score=42.00 Aligned_cols=100 Identities=16% Similarity=0.199 Sum_probs=73.2
Q ss_pred HHHHHHH--HHHHHHhcCHHHHHHHHHHhhccCC----CCc------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh--
Q 026145 128 ALALRKR--AEAEFEKANFSEADGFLSQAIELKP----FGG------IHVLYKDRCLARLTMGNFSAALEDVREALEL-- 193 (243)
Q Consensus 128 ~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p----~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-- 193 (243)
+.+|..+ |.-.+..|-|++|...+.++++..- ... .+-.+..++..+..+|+|++++...+++|..
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 3444444 4456678999999999999997642 211 1345667888999999999999999988854
Q ss_pred -----CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 194 -----APN----YTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 194 -----~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
+.+ +..+.++++.++..+|+.++|+..|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 333 3557789999999999999999999988653
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.46 E-value=0.0049 Score=44.56 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
.....+.....+-...++.+++...+.-.--+.|+.+ .+-..-|..+...|+|.+|+..++.+....|..+.+.-.++
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~--e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP--ELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4455677778888888999999999999999999977 88888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHH
Q 026145 206 DVFLAMDQYD 215 (243)
Q Consensus 206 ~~~~~~g~~~ 215 (243)
.|++.+|+.+
T Consensus 86 ~CL~~~~D~~ 95 (160)
T PF09613_consen 86 LCLYALGDPS 95 (160)
T ss_pred HHHHHcCChH
Confidence 9999999753
No 259
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.45 E-value=0.00067 Score=53.89 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=66.2
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
+.+.-..+.|+.++|...|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.++|.+.++..++++-
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3455556889999999999999999999999999999999999999999999999999999999998887763
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.43 E-value=0.0059 Score=51.77 Aligned_cols=117 Identities=18% Similarity=0.148 Sum_probs=82.5
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC---------------------
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF--------------------- 160 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------------------- 160 (243)
++..-++.-.+++..+| +-+.+|..+|.. ......+|.++|+++++....
T Consensus 183 np~aRIkaA~eALei~p-------dCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~R 253 (539)
T PF04184_consen 183 NPQARIKAAKEALEINP-------DCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRR 253 (539)
T ss_pred CHHHHHHHHHHHHHhhh-------hhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcc
Confidence 44555555555555555 555555555542 123456777777777654210
Q ss_pred --CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 161 --GGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 161 --~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
++...+...+|+|..++|+.++|++.++..++.+|. +..++.++-.++..++.|.++...+.+.-++
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 011234567899999999999999999999998875 4568999999999999999999999887544
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.37 E-value=0.0053 Score=52.02 Aligned_cols=113 Identities=11% Similarity=0.031 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYTEAYICQGD 206 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~ 206 (243)
..+-+.+|++..+.|+.++|++.+...++..|......+..++..+++.++.|.++...+.+-=.+ -|.++...+..|.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344567899999999999999999999988876334478999999999999999999998875433 2556665555554
Q ss_pred HHHH-cCC---------------HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 207 VFLA-MDQ---------------YDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 207 ~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+-.+ .++ -..|++.+.+|++.||.-+....-.+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 3322 221 234778999999999998876554443
No 262
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.35 E-value=0.011 Score=49.02 Aligned_cols=135 Identities=11% Similarity=0.007 Sum_probs=93.8
Q ss_pred EEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhcc-CCCCchHHHHHhHH
Q 026145 96 VVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIEL-KPFGGIHVLYKDRC 171 (243)
Q Consensus 96 ~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~-~p~~~~~~~~~~la 171 (243)
.|....+++..+++++..-.... . .-.......+..|.++.+ .|+.++|+..+..++.. .+.++ +++..+|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~-~--~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~--d~~gL~G 224 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPT-C--DVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP--DTLGLLG 224 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCc-c--chhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh--HHHHHHH
Confidence 46667799999999887654421 1 122445556677777777 89999999999985544 44544 8888888
Q ss_pred HHHHH---------cCCHHHHHHHHHHHHHhCCCc---------------------------------------------
Q 026145 172 LARLT---------MGNFSAALEDVREALELAPNY--------------------------------------------- 197 (243)
Q Consensus 172 ~~~~~---------~~~~~~A~~~~~~al~~~p~~--------------------------------------------- 197 (243)
.+|-. ....++|+.+|.++.+++|+.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 87753 224788999999999887632
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
.+.+-.++.+..-.|++++|++++++++++.|..-...
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~ 342 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE 342 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence 12233455566678889999999999998877654433
No 263
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.35 E-value=0.0021 Score=37.43 Aligned_cols=42 Identities=19% Similarity=0.324 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+.++.+|..++++|+|++|......+++++|++.++..+...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 356777888888888888888888888888888877766543
No 264
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.34 E-value=0.0026 Score=45.70 Aligned_cols=63 Identities=27% Similarity=0.279 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
..++..++..+...|++++|+..+.+++..+|-+- .+|..+-.++..+|+..+|+..|++..+
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E--~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDE--EAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44566778888899999999999999999999976 8999999999999999999999998754
No 265
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.30 E-value=0.0043 Score=43.26 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHhHHHHHHHcC---CHHHHHHHHHHHHH-hCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 166 LYKDRCLARLTMG---NFSAALEDVREALE-LAPN-YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 166 ~~~~la~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
..++++.++.+.. +..+.+..++..++ -.|. ..+..+.++..++++++|+.++.+.+..++.+|+++++..+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3444444444333 23344555555553 2222 13344555555555555555555555555555555555443
No 266
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.29 E-value=0.0082 Score=41.92 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhc-cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 026145 126 LEALALRKRAEAEFEKA---NFSEADGFLSQAIE-LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAY 201 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 201 (243)
...+..+++|+.+.+.. +..+.+..++..++ ..|+. ..+..+.++..++++++|+.++.+.+..++..|+|..+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~-rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER-RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc-chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 45667888999988754 56788999999996 55554 357778899999999999999999999999999998877
Q ss_pred HHHHHHHH
Q 026145 202 ICQGDVFL 209 (243)
Q Consensus 202 ~~la~~~~ 209 (243)
...-.+.-
T Consensus 109 ~Lk~~ied 116 (149)
T KOG3364|consen 109 ELKETIED 116 (149)
T ss_pred HHHHHHHH
Confidence 65544443
No 267
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0075 Score=50.87 Aligned_cols=104 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
.+...|...|.--..++++..|...|++||..+..+. ..|...+.+-++.+....|...+++|+.+-|.-...|+..-
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~i--tLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNI--TLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccc--hHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5566788888888889999999999999999998876 89999999999999999999999999999998888999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.+-..+|+..-|.+.|.+-+...|+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w~P~e 174 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEWEPDE 174 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcCCCcH
Confidence 89999999999999999999999964
No 268
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.27 E-value=0.00058 Score=34.49 Aligned_cols=30 Identities=37% Similarity=0.474 Sum_probs=15.2
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAP 195 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p 195 (243)
++..+|.++..++++++|+..++++++++|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.26 E-value=0.00072 Score=36.02 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 167 YKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
|.++|.+|..+|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 270
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.24 E-value=0.00061 Score=51.84 Aligned_cols=58 Identities=28% Similarity=0.234 Sum_probs=40.9
Q ss_pred HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 026145 138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY 197 (243)
Q Consensus 138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 197 (243)
..+.++.+.|.+.|.+++++.|+.. ..|+.+|....+.|+++.|...|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~--~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWA--AGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhh--hhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4456677777777777777777755 667777777777777777777777777777755
No 271
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0071 Score=52.68 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
..+.+-|..+++..+|..++++|...+...|.+. ++....+++.||+.+.+.+.|.+.+++|-+.+|.++-.-+..
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 3455678888999999999999999998877653 356778899999999999999999999999999998887878
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccC
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
-.+....+.-++|+....+.....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhhh
Confidence 888888899999998888776543
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.0065 Score=46.90 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=89.5
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRC 171 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la 171 (243)
+.|....+++++..-+.++.+... ...+-..-+.++-..|....+...+.++..+|++|..+.-+++ .+..-...+
T Consensus 39 vafRnAk~feKakdcLlkA~~~yE-nnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYE-NNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 445566688888888877764331 2223334555666777777788999999999999998753322 123344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 172 LARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
--.....++++|++.|++++.+--.+ .+.+-..+.++.+..++++|-..+.+-.
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEG 177 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhh
Confidence 55678889999999999998764322 2345566788889999998877776643
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.042 Score=40.35 Aligned_cols=136 Identities=11% Similarity=0.018 Sum_probs=97.0
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHc
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTM 177 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~ 177 (243)
.+.+++|..-|..+.+.+. ......+.+..|.+..+.|+...|+..|.++-.-.|... ...+...-+..+...
T Consensus 71 ~~k~d~Alaaf~~lektg~-----g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~ 145 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGY-----GSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDN 145 (221)
T ss_pred cCCchHHHHHHHHHHhcCC-----CcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcc
Confidence 3466777777766543321 224566788889999999999999999999876654332 124556668888899
Q ss_pred CCHHHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 178 GNFSAALEDVREAL-ELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 178 ~~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
|.|++...-.+..- ..+|-...+.-.||.+-++-|++..|..+|..... +...|+.-..++++
T Consensus 146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 99998776665432 23455567888899999999999999999998876 55555555544443
No 274
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.15 E-value=0.00092 Score=33.70 Aligned_cols=31 Identities=32% Similarity=0.660 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 200 AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 200 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
+++.+|.++...+++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666654
No 275
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0012 Score=55.63 Aligned_cols=116 Identities=11% Similarity=0.106 Sum_probs=87.1
Q ss_pred eEEEecCCHhHHHHHHHHHh-cCCCCCcchh--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhc---------cCCCC-
Q 026145 95 VVVGHCGTPARASEILMVLC-GIKSDHDAAK--NLEALALRKRAEAEFEKANFSEADGFLSQAIE---------LKPFG- 161 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l-~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---------~~p~~- 161 (243)
..++..|++.+|.+.+...- ...+ ....+ -..-..|+++|.+++..+.|.-+..+|.+|++ +.|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~-g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEA-GGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhccccccc-CccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34455668888888876532 1111 11111 12445678999999999999999999999995 12211
Q ss_pred ------chHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145 162 ------GIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211 (243)
Q Consensus 162 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 211 (243)
...+..+|.|..|+..|++-.|.++|.++....-.+|..|.++|.|....
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 02368899999999999999999999999999999999999999987653
No 276
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.10 E-value=0.0038 Score=40.91 Aligned_cols=65 Identities=20% Similarity=0.158 Sum_probs=39.7
Q ss_pred HHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCC
Q 026145 147 ADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY--TEAYICQGDVFLAMDQ 213 (243)
Q Consensus 147 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 213 (243)
.+..+++.++.+|++. .+.+.+|..+...|++++|++.+-.+++.++++ ..+.-.+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~--~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDL--DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3456677777777776 777777777777777777777777777776654 3344444444444443
No 277
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.07 E-value=0.011 Score=39.88 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=76.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhccCCCCch-HHHHHhHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCcHHHH
Q 026145 134 RAEAEFEKANFSEADGFLSQAIELKPFGGI-HVLYKDRCLARLTMGN-----------FSAALEDVREALELAPNYTEAY 201 (243)
Q Consensus 134 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~la~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~~~ 201 (243)
+|..++..|++-+|++..+..+...+++.. +..+...|.++..+.. .-.+++.+.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 467889999999999999999999887641 1344455776654432 3568999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 202 ICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 202 ~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+.+|.-+.....|+++..-.++++.+.
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 999988888888999999888888763
No 278
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.07 E-value=0.01 Score=49.24 Aligned_cols=99 Identities=21% Similarity=0.303 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-CCCc----h----HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK-PFGG----I----HVLYKDRCLARLTMGNFSAALEDVREALELAPN 196 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~----~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 196 (243)
.++...+..+......|+|..|++++.+.-.+. |..+ + ...-..+..||+++++.+.|+....+.|.++|.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 334444444444444555555555555543332 2211 1 234457899999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 197 YTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 197 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
++..++..|.++..+.+|.+|...+--+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654433
No 279
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=97.01 E-value=0.0091 Score=37.65 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=52.1
Q ss_pred EEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCCCCCCC---CCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCC
Q 026145 42 ELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCG---AGPNLVALPDGVVVGHCGTPARASEILMVLCGIKS 118 (243)
Q Consensus 42 ~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc~g~c~---~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~ 118 (243)
.|-+|.+. ...|++.+++.|++. +++.|...||++.|+ ..|-+.+ +|.+-... +.++..+-+.+.++..|
T Consensus 4 iVefC~~N--l~~g~~~~~~~Le~~--p~~~Vie~gCl~~Cg~C~~~pFAlV--nG~~V~A~-t~eeL~~kI~~~i~e~~ 76 (78)
T PF07293_consen 4 IVEFCVSN--LASGTDQVYEKLEKD--PDIDVIEYGCLSYCGPCAKKPFALV--NGEIVAAE-TAEELLEKIKEKIEENP 76 (78)
T ss_pred eEEEcccC--chhhhHHHHHHHhcC--CCccEEEcChhhhCcCCCCCccEEE--CCEEEecC-CHHHHHHHHHHHHhccc
Confidence 47778754 347899999999864 578999999999877 5676655 67766655 88888877777776553
No 280
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.97 E-value=0.024 Score=40.42 Aligned_cols=86 Identities=17% Similarity=0.022 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV 207 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 207 (243)
...+......-....+.+++...+...--+.|+.+ .+-..-|..+...|+|.+|+..++......+..+.+.-.++.|
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~--e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK--ELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc--ccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 34455555666668999999999998888999977 8888889999999999999999999998888888888889999
Q ss_pred HHHcCCHH
Q 026145 208 FLAMDQYD 215 (243)
Q Consensus 208 ~~~~g~~~ 215 (243)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 99999743
No 281
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.018 Score=44.22 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=71.6
Q ss_pred HHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHH-cCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 026145 135 AEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLT-MGNFSAALEDVREALELAPNY------TEAYIC 203 (243)
Q Consensus 135 a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~------~~~~~~ 203 (243)
+...++..++.+|+..+++++++..+-+ -+..+..+|.+|-. +.++++|+.+|+++-+-.... -..+..
T Consensus 80 A~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK 159 (288)
T KOG1586|consen 80 AANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK 159 (288)
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence 3334566689999999999998876532 01234467777754 488999999999987654322 345666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
.+..-..+++|.+|+..|++.....-+++-+
T Consensus 160 vA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 160 VAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 7777788999999999999988766555544
No 282
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.96 E-value=0.011 Score=38.80 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 183 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 4677888899999999999999999999999999999999999988765
No 283
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.94 E-value=0.0039 Score=50.76 Aligned_cols=100 Identities=10% Similarity=0.007 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC----c---
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPN----Y--- 197 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~--- 197 (243)
.....+|+.+...+.++++++.|++|++...++. --.++..+|..+..++++++|+-+..+|.++-.+ +
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3445578888888999999999999998754432 1257888999999999999999999998876421 1
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 198 ---TEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 198 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.-+++.+++++..+|..-.|.+..+++.++.
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 3467889999999999999999888887653
No 284
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.91 E-value=0.015 Score=44.61 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=68.5
Q ss_pred HHHHhcCHHHHHHHHHHhhccC----CCC-chHHHHHhHHHHHHHcCCH-------HHHHHHHHHHHHhCC------CcH
Q 026145 137 AEFEKANFSEADGFLSQAIELK----PFG-GIHVLYKDRCLARLTMGNF-------SAALEDVREALELAP------NYT 198 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~----p~~-~~~~~~~~la~~~~~~~~~-------~~A~~~~~~al~~~p------~~~ 198 (243)
.+.....+++|++.|.-|+-.. +.+ ..+..+..+|.+|..+++. ..|++.|.+++.... +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 3445667888888887776431 121 1467788889999998885 455666666665432 225
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCch
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIR 232 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 232 (243)
...+.+|.+..+.|++++|..+|.+++.....+.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 6888999999999999999999999998654433
No 285
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.90 E-value=0.0016 Score=49.57 Aligned_cols=62 Identities=29% Similarity=0.434 Sum_probs=57.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchh
Q 026145 172 LARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRR 233 (243)
Q Consensus 172 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 233 (243)
......++.+.|.+.|.+++.+.|.+...|+.+|....+.|+++.|.+.|.+.++++|++..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 44567889999999999999999999999999999999999999999999999999998654
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.87 E-value=0.064 Score=39.96 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH---
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREALELA--PNYTE--- 199 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~--- 199 (243)
..-.++..+|..|.+.|+.+.|++.|.++.+.-.... ..+.++++-.+.+..++|..+.....++-..- +.++.
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4556788999999999999999999999877543221 45677888888899999999999999887653 23333
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 200 -AYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 200 -~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.....|..+...++|.+|-+.|-.+..-
T Consensus 114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 114 RLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2334577778899999999888766543
No 287
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.85 E-value=0.096 Score=43.43 Aligned_cols=124 Identities=19% Similarity=0.144 Sum_probs=73.2
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
.-.|++++|.+-|+..+.... ....-+..+=......|+.+.|+.+-+.+-...|.-+ .++...-......
T Consensus 131 l~eG~~~~Ar~kfeAMl~dPE-------tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~--WA~~AtLe~r~~~ 201 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDDPE-------TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLP--WAARATLEARCAA 201 (531)
T ss_pred HhcCchHHHHHHHHHHhcChH-------HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc--hHHHHHHHHHHhc
Confidence 346688999988887664331 1111111111222345666666666666666666633 5555444555566
Q ss_pred CCHHHHHHHHH-----------------------------------------HHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145 178 GNFSAALEDVR-----------------------------------------EALELAPNYTEAYICQGDVFLAMDQYDA 216 (243)
Q Consensus 178 ~~~~~A~~~~~-----------------------------------------~al~~~p~~~~~~~~la~~~~~~g~~~~ 216 (243)
|+|+.|++..+ +++++.|+...+-.--+.++++.|+..+
T Consensus 202 gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rK 281 (531)
T COG3898 202 GDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRK 281 (531)
T ss_pred CChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhh
Confidence 66666655554 4444455555666666777777777777
Q ss_pred HHHHHHHHhccCCC
Q 026145 217 AEKSYSTCLQIDPS 230 (243)
Q Consensus 217 A~~~~~~al~~~p~ 230 (243)
+-..++.+.+.+|+
T Consensus 282 g~~ilE~aWK~ePH 295 (531)
T COG3898 282 GSKILETAWKAEPH 295 (531)
T ss_pred hhhHHHHHHhcCCC
Confidence 77777777777664
No 288
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.85 E-value=0.027 Score=43.26 Aligned_cols=107 Identities=14% Similarity=-0.053 Sum_probs=70.3
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHH-------HHHHHHHHhhccCCC--Cc--hHHHH
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFS-------EADGFLSQAIELKPF--GG--IHVLY 167 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-------~A~~~~~~al~~~p~--~~--~~~~~ 167 (243)
...+.++|++.+.-++-...-........+..+..+|+.|...++.+ .|+..|.+++..... .. -..+.
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 34488889888776552211012223367888889999999888854 555555555544322 21 23677
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHH
Q 026145 168 KDRCLARLTMGNFSAALEDVREALELAPNYT-EAYICQG 205 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la 205 (243)
+.+|.+..+.|++++|..+|.+++.....+. .....+|
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 8899999999999999999999997433222 2444444
No 289
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=96.82 E-value=0.0057 Score=41.90 Aligned_cols=67 Identities=31% Similarity=0.515 Sum_probs=46.5
Q ss_pred EEEccCCccCc---------cCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCCeEEEecC--CH-hH
Q 026145 43 LRVCTNRTCRR---------QGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCG--TP-AR 105 (243)
Q Consensus 43 i~vC~~~~c~~---------~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~--~~-~~ 105 (243)
|+||+ +|.. +++..++++|+.. +. ..|.|..+.|+..|..+-++.+...|.+-+-.| ++ ++
T Consensus 1 l~VC~--tCr~~~~~~~~~~~~G~~L~~aL~~~~~~~~~~~~v~v~~v~CL~~C~r~CtVA~~~~gK~tYlfGdl~p~~~ 78 (116)
T PF07845_consen 1 LFVCT--TCRRSGEDPEDGPRPGAALLDALRAALADAPLPDGVEVRPVECLSACDRPCTVALQAPGKWTYLFGDLDPDED 78 (116)
T ss_pred CEEeC--CCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCceEEEeccHHhcCCCceEEEEEcCCCcEEEEecCCcccC
Confidence 56775 4444 4789999999985 43 379999999999999999988876554333333 33 44
Q ss_pred HHHHHH
Q 026145 106 ASEILM 111 (243)
Q Consensus 106 a~~~l~ 111 (243)
+..++.
T Consensus 79 a~~il~ 84 (116)
T PF07845_consen 79 AEDILA 84 (116)
T ss_pred HHHHHH
Confidence 554443
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.028 Score=41.92 Aligned_cols=94 Identities=19% Similarity=0.075 Sum_probs=72.0
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 176 (243)
+...+++++|...++..+.... +....+-+-.++|.+....+.+++|+..++..-.-.- .+.....+|.++..
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~ 171 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTK----DENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLA 171 (207)
T ss_pred HHhhccHHHHHHHHHHHHccch----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHH
Confidence 3445699999999998886553 2224555677899999999999999999876443211 12455668999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 026145 177 MGNFSAALEDVREALELAPNY 197 (243)
Q Consensus 177 ~~~~~~A~~~~~~al~~~p~~ 197 (243)
.|+-.+|...|++++..+++.
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 172 KGDKQEARAAYEKALESDASP 192 (207)
T ss_pred cCchHHHHHHHHHHHHccCCh
Confidence 999999999999999987544
No 291
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.041 Score=42.62 Aligned_cols=103 Identities=18% Similarity=0.127 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELA-----PNY 197 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~ 197 (243)
-+..+...+..|....+|++|...+.+|.+-..++. -+.+|-..++....+..+.++...++++..+. |+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 344566666677778999999999999997655542 13556667788888999999999999998763 444
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
+..-...+--....-+.++|++.|++++.+-.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 44444455555566789999999999987643
No 292
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.0098 Score=46.74 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=34.8
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 168 KDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
.++=..+...++++.|+...++.+.++|.++.-+.-.|.+|.++|.+.-|++.++..++.-|+++.+-
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~ 252 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAE 252 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHH
Confidence 33334444455555555555555555555555555555555555555555555555555555554443
No 293
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.67 E-value=0.022 Score=51.32 Aligned_cols=100 Identities=14% Similarity=-0.012 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhh----------ccCCCCc--------hHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAI----------ELKPFGG--------IHVLYKDRCLARLTMGNFSAALEDVR 188 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al----------~~~p~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~ 188 (243)
.-..+++.|..+...++.+.|+++|+++- .-+|... ....|...|..+-..|+.+.|+..|.
T Consensus 857 Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 857 LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHH
Confidence 34568888999999999999999999872 2223210 12677788999999999999999998
Q ss_pred HHHHhC---------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 189 EALELA---------------------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 189 ~al~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.|-.-. ..+..+-+.+|..|...|++.+|+.+|.+|-.
T Consensus 937 ~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 937 SAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 775332 34567899999999999999999998887644
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.61 E-value=0.13 Score=41.53 Aligned_cols=116 Identities=17% Similarity=0.071 Sum_probs=86.9
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHc
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE----KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~ 177 (243)
+...|.+.+......+ .+.+.+.+|..+.. ..++.+|..+|.++........ ..+.+.++.+|..-
T Consensus 92 ~~~~A~~~~~~~a~~g---------~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g 161 (292)
T COG0790 92 DKTKAADWYRCAAADG---------LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSG 161 (292)
T ss_pred cHHHHHHHHHHHhhcc---------cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcC
Confidence 5788888888655444 35677788888876 4599999999999998754420 13477788887654
Q ss_pred C-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHhccCC
Q 026145 178 G-------NFSAALEDVREALELAPNYTEAYICQGDVFLA----MDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 178 ~-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p 229 (243)
. +...|+..|.++-... ++.+.+.+|.+|.. ..++++|..+|.++.+...
T Consensus 162 ~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 162 LQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 1 2347899999887755 78899999988865 3388999999999998776
No 295
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.57 E-value=0.14 Score=45.07 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=102.6
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHH
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLT 176 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~ 176 (243)
..|++.+.+..+..++..- +|..........|...|..|...|+.+.|...|+++....=... ++.+|.+.|..-+.
T Consensus 359 ~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred hcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 3457888888888877544 24444556677899999999999999999999999998752211 57899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC-------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 177 MGNFSAALEDVREALELAPN-------------------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 177 ~~~~~~A~~~~~~al~~~p~-------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
..+++.|+...++|... |. +...|...+......|-++.....|.+.+.+---.|+.-.+
T Consensus 438 h~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred hhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99999999999988753 21 23466777777777887877778888887776555544433
Q ss_pred h
Q 026145 238 K 238 (243)
Q Consensus 238 ~ 238 (243)
+
T Consensus 517 y 517 (835)
T KOG2047|consen 517 Y 517 (835)
T ss_pred H
Confidence 3
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.47 E-value=0.17 Score=41.69 Aligned_cols=115 Identities=18% Similarity=0.175 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---C-----
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLTMGNFSAALEDVREALELA---P----- 195 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p----- 195 (243)
..+..|...+....+.|.++.|...+.++....+... .+.+.+..+..+...|+..+|+..++..+... +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 6677899999999999999999999999988653211 12678888999999999999999998888711 1
Q ss_pred --------------------------CcHHHHHHHHHHHHHc------CCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 196 --------------------------NYTEAYICQGDVFLAM------DQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 196 --------------------------~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
..+.++..+|...... ++.+++...|.+++.++|+...++...+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0134677777777777 88999999999999999998888776654
No 297
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.47 E-value=0.054 Score=47.56 Aligned_cols=132 Identities=13% Similarity=0.088 Sum_probs=85.9
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-------C--c--
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPF-------G--G-- 162 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~--~-- 162 (243)
+..|...|+.++|..+|+++...+- ......+..|..-|.--.+..+++.|+...+.|...-.. + +
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y---~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPY---KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCc---cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 4567788899999999999886553 122255778888888888888999999999888754211 0 0
Q ss_pred -----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 163 -----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 163 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
...+|..++...-..|-++.--..|++.+.+.--.|....|.|..+....-+++|.+.|++.+.+-
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 013444445555555666666666666666655556666666666666666666666666665553
No 298
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.12 Score=41.28 Aligned_cols=110 Identities=16% Similarity=0.022 Sum_probs=80.6
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHh-------------------
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQA------------------- 154 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------------------- 154 (243)
+.-....|++.++...|..++...+ .+..+...++.++...|+.+.|...+...
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-------~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll 213 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-------ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELL 213 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-------ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 3345567799999999999998887 55777788888888888887777666542
Q ss_pred ---------------hccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcC
Q 026145 155 ---------------IELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN--YTEAYICQGDVFLAMD 212 (243)
Q Consensus 155 ---------------l~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g 212 (243)
+..+|++. .+.+.++..+...|++++|++.+-..++.+.. +..+.-.+-.++...|
T Consensus 214 ~qaa~~~~~~~l~~~~aadPdd~--~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 214 EQAAATPEIQDLQRRLAADPDDV--EAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHhcCCCHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 12257766 88889999999999999999999888877643 3344444444444444
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.45 E-value=0.25 Score=39.71 Aligned_cols=131 Identities=14% Similarity=0.073 Sum_probs=93.2
Q ss_pred ecCCHhHHHHHHHHHhcCC-CCCcchhhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHhhcc----CCCC---c-----hH
Q 026145 99 HCGTPARASEILMVLCGIK-SDHDAAKNLEALALRKRAEAEFEKA-NFSEADGFLSQAIEL----KPFG---G-----IH 164 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~----~p~~---~-----~~ 164 (243)
..|+.+.|..++.++-... .-........+..+++.|......+ ++++|+.+++++.++ .+.+ + ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4568888888888765432 1122334467778999999999999 999999999999887 2211 1 13
Q ss_pred HHHHhHHHHHHHcCCHH---HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 165 VLYKDRCLARLTMGNFS---AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
.++..++.+|...+.++ +|....+.+-.-.|+.+..+...=.++.+.++.+++.+.+.+.+..-+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 56778899999888765 445555555556688777775555555558889999999998887543
No 300
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.045 Score=46.58 Aligned_cols=92 Identities=10% Similarity=0.041 Sum_probs=77.5
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC-H
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN-F 180 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~-~ 180 (243)
-+.....+|+.+....+ .+...|........+.+.+.+--..|.+++..+|+++ +.|..-|.-.+.-+. .
T Consensus 86 i~~rIv~lyr~at~rf~-------~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni 156 (568)
T KOG2396|consen 86 IPNRIVFLYRRATNRFN-------GDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNI 156 (568)
T ss_pred HHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccch
Confidence 45677888888887665 5677888777777777779999999999999999998 999988888877776 8
Q ss_pred HHHHHHHHHHHHhCCCcHHHHH
Q 026145 181 SAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 181 ~~A~~~~~~al~~~p~~~~~~~ 202 (243)
+.|...+.++|+.+|+++..|.
T Consensus 157 ~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 157 ESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HHHHHHHHHHhhcCCCChHHHH
Confidence 9999999999999999987654
No 301
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.054 Score=43.96 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcH---HHHHHHHHH
Q 026145 132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYT---EAYICQGDV 207 (243)
Q Consensus 132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~---~~~~~la~~ 207 (243)
...+.++...|++.+|-..+++.++-.|.+. -++..--.+++.+|+.......+++++.. +|+-| ...-.++..
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL~d~PtDl--la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLLDDYPTDL--LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHHHhCchhh--hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 3445566788999999999999999999986 56666667788899999999999999876 55543 344456778
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCchhhh
Q 026145 208 FLAMDQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
+...|-|++|++.-.++++++|.+.=+.
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~ 212 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWAS 212 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHH
Confidence 8899999999999999999999875443
No 302
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.37 E-value=0.011 Score=32.12 Aligned_cols=29 Identities=31% Similarity=0.356 Sum_probs=18.9
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45666777777777777777777766654
No 303
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.12 Score=40.55 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=75.1
Q ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145 130 ALRKRAEAEFE-KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS-AALEDVREALELAPNYTEAYICQGDV 207 (243)
Q Consensus 130 ~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~-~A~~~~~~al~~~p~~~~~~~~la~~ 207 (243)
.|..+-.++.. ..+..+-+++..+.++-+|.|- ++|..+-.+.-..|++. .-++....++..+..+-.+|..+-.+
T Consensus 79 VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY--QvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~ 156 (318)
T KOG0530|consen 79 VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY--QVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWV 156 (318)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch--hHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHH
Confidence 34333333333 3456777788888888888876 88888877877888877 77888888888887777788887777
Q ss_pred HHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 208 FLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 208 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
....+.++.-+.+..+.++.+--+-.+|.
T Consensus 157 ~r~F~~~~~EL~y~~~Lle~Di~NNSAWN 185 (318)
T KOG0530|consen 157 LRFFKDYEDELAYADELLEEDIRNNSAWN 185 (318)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhccchhh
Confidence 77777777777777777766655555543
No 304
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.36 E-value=0.052 Score=42.78 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGD 206 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~ 206 (243)
......++=..+...++++.|...-++.+.++|+++ .-+..+|.+|.++|.+..|+++++..++.-|+.+.+-.-...
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp--~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDP--YEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCCh--hhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 333444555667889999999999999999999987 778899999999999999999999999999998876655443
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.054 Score=42.42 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=84.0
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG-NFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD-AA 217 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 217 (243)
+...-+.|+.+-..+|.++|.+- .+|..+-.++..++ +..+-++++++++.-+|.+-..|..+-.+...+|+.. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnY--TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANY--TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccc--hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 34556778888899999999976 88888777776554 6788899999999999999999999999999999988 78
Q ss_pred HHHHHHHhccCCCchhhhhhhh
Q 026145 218 EKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 218 ~~~~~~al~~~p~~~~~~~~~a 239 (243)
+++.+.++..+..+-.+|.+++
T Consensus 133 Lef~~~~l~~DaKNYHaWshRq 154 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQ 154 (318)
T ss_pred HHHHHHHHhccccchhhhHHHH
Confidence 8999999999999999988765
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.28 E-value=0.057 Score=39.13 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=68.2
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
..+.....+-...++.+++...+.-.-.+.|..+..-..-|.++...|+|.+|+..++....-.|..+.+..+++-+
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 55666777778889999999999988889999999999999999999999999999999999999888877776654
No 307
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.25 E-value=0.092 Score=43.67 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=76.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhcc----CCCCchHHHHHhHHHHHHH---cCCHHHHHHHHHHHH-HhCCCcHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIEL----KPFGGIHVLYKDRCLARLT---MGNFSAALEDVREAL-ELAPNYTEAYI 202 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~al-~~~p~~~~~~~ 202 (243)
..++=..|....+|+.-+.+.+..-.+ -++.. .+.+.+|.++-+ .|+.++|+..+..++ ...+.+++.+.
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~--~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQH--NIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcch--HHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344445577788899888888876655 33333 677788889988 999999999999954 45667889999
Q ss_pred HHHHHHHHc---------CCHHHHHHHHHHHhccCCCc
Q 026145 203 CQGDVFLAM---------DQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 203 ~la~~~~~~---------g~~~~A~~~~~~al~~~p~~ 231 (243)
.+|.+|... ...++|+.+|.++..++|+.
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~ 259 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY 259 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence 999888642 24788999999999999763
No 308
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.24 E-value=0.0091 Score=47.71 Aligned_cols=87 Identities=8% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 151 LSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC-QGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 151 ~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
|.++-...|+++ ..|...+....+.+-|.+--..|.+++..+|.+.+.|.. -+--+...++.+.+...++++++++|
T Consensus 96 ~~R~tnkff~D~--k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~ 173 (435)
T COG5191 96 LYRSTNKFFNDP--KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNS 173 (435)
T ss_pred eehhhhcCCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCC
Confidence 333444456666 777777766677778888888888899999988888876 34556778888889999999999999
Q ss_pred Cchhhhhhhh
Q 026145 230 SIRRSKSFKV 239 (243)
Q Consensus 230 ~~~~~~~~~a 239 (243)
++|..|..+-
T Consensus 174 ~~p~iw~eyf 183 (435)
T COG5191 174 RSPRIWIEYF 183 (435)
T ss_pred CCchHHHHHH
Confidence 9888886543
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.20 E-value=0.045 Score=49.47 Aligned_cols=88 Identities=20% Similarity=0.164 Sum_probs=65.9
Q ss_pred HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH----------HHhCC---------
Q 026145 135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA----------LELAP--------- 195 (243)
Q Consensus 135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a----------l~~~p--------- 195 (243)
-..|...|.|++|.+.-+.-=++. +...|++.+.-+-..++.+.|+++|+++ |.-+|
T Consensus 833 NKlyQs~g~w~eA~eiAE~~DRiH----Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 833 NKLYQSQGMWSEAFEIAETKDRIH----LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHhcccHHHHHHHHhhcccee----hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 345566788888877765433333 3467999999999999999999999874 22233
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 196 -NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 196 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.++..|...|..+...|+.+.|+.+|..|-.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 3456788889999999999999999988754
No 310
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.19 E-value=0.097 Score=42.99 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=25.9
Q ss_pred HHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145 146 EADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 146 ~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 202 (243)
.-+..|++||+.+|++. ..+..+-....+.-+-++...-+++++..+|+++..|.
T Consensus 49 ~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~ 103 (321)
T PF08424_consen 49 RKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWR 103 (321)
T ss_pred HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 33444555555555443 44433333334444445555555555555555444433
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.16 E-value=0.013 Score=31.81 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..++.++|.+|..+|++++|..++++++.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999998753
No 312
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=96.16 E-value=0.032 Score=38.64 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=48.3
Q ss_pred CCCcEEEEccCCc--------cCccCHHHHHHHHHhc----CC-CcEEEEeeCCCCCCCCCCeEEEecCC-eEEEecC-C
Q 026145 38 AELKELRVCTNRT--------CRRQGSMQILETLSSL----AP-PEVAVKSCGCLGRCGAGPNLVALPDG-VVVGHCG-T 102 (243)
Q Consensus 38 ~~~~~i~vC~~~~--------c~~~G~~~~~~~l~~~----g~-~~v~v~~~gc~g~c~~~p~~~~~~~g-~~~~~~~-~ 102 (243)
.+++.++||..-. -...+++.+++.+.++ .+ ..+.|..++|+..|..+-++.....+ ..|...+ +
T Consensus 15 ~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~sYLFgdL~ 94 (143)
T COG5469 15 MPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWEIAHEFEIQTVECLAACNRGCVVAFSGPGKPSYLFGDLT 94 (143)
T ss_pred cCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhhhhccceeeeeHhhhhcCCCeEEEEecCCCceEEEccCC
Confidence 3678999997431 1123678899998873 22 36889999999999999888765544 3333221 4
Q ss_pred HhH-HHHHHH
Q 026145 103 PAR-ASEILM 111 (243)
Q Consensus 103 ~~~-a~~~l~ 111 (243)
+++ |.++++
T Consensus 95 p~d~a~dLl~ 104 (143)
T COG5469 95 PDDSASDLLE 104 (143)
T ss_pred ccccHHHHHH
Confidence 444 444443
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.13 E-value=0.22 Score=41.04 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=96.2
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-CCC---------------
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-KPF--------------- 160 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~--------------- 160 (243)
....|.++.|...+.++....+ . .....+...+..+..+...|+..+|+..++..+.. ...
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~-~--~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNP-S--SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLL 232 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCC-c--ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccc
Confidence 3556788888888888775442 0 01114567788899999999999999998888871 100
Q ss_pred -----------Cc-----hHHHHHhHHHHHHHc------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-----
Q 026145 161 -----------GG-----IHVLYKDRCLARLTM------GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ----- 213 (243)
Q Consensus 161 -----------~~-----~~~~~~~la~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----- 213 (243)
.. .+.++..+|...... +..++++..|.++++.+|.+..+|+.+|..+...=+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~ 312 (352)
T PF02259_consen 233 ESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPRE 312 (352)
T ss_pred cccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhc
Confidence 00 245666677766667 888999999999999999999999999888765422
Q ss_pred ------------HHHHHHHHHHHhccCCC
Q 026145 214 ------------YDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 214 ------------~~~A~~~~~~al~~~p~ 230 (243)
...|+..|-+++...++
T Consensus 313 ~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 313 KEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 13488889999988887
No 314
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0097 Score=48.26 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCC---CC----------c----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKP---FG----------G----IHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~----------~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
.....++..++.++|..|..-|.+++.... .+ . -...+.+.+.+-+..+.+..|+.....+++
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 344567778889999999988888865321 10 0 124566788999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 193 LAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 193 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.++....+++.++..+..+.++++|++++..+....|++......+
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 8888999999999999999999999999999999999988765443
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.91 E-value=0.25 Score=43.78 Aligned_cols=121 Identities=14% Similarity=-0.044 Sum_probs=90.4
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh----c-CHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK----A-NFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~----~-~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..+++.|+.++..+..... .......+.+.+.+|.+|.+. . ++..|+.+|.++-..... .+.+.+|.++
T Consensus 262 ~~d~e~a~~~l~~aa~~~~--~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~----~a~~~lg~~~ 335 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFK--KAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP----DAQYLLGVLY 335 (552)
T ss_pred cccHHHHHHHHHHHHHHHH--HHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc----hHHHHHHHHH
Confidence 3488999999987764100 000001234677888888874 3 789999999999887655 5678889888
Q ss_pred HHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHhccC
Q 026145 175 LTMG---NFSAALEDVREALELAPNYTEAYICQGDVFLAM----DQYDAAEKSYSTCLQID 228 (243)
Q Consensus 175 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~ 228 (243)
..-. ++..|.++|..|.. -.+..+.++++.+|..- -+.+.|..++.++.+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 7654 67899999999875 45788999999998753 37899999999999887
No 316
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=95.82 E-value=0.15 Score=32.21 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
.+......|.-++...+.++|+..+.++++..++.. ...++-.+..+|...|+|.+.+.+..+=+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777788888888888887766643 12233344566677777777776664433
No 317
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.80 E-value=0.45 Score=40.70 Aligned_cols=126 Identities=11% Similarity=0.025 Sum_probs=89.6
Q ss_pred cCCHhHHHHHHHHHh---cCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-chHHHHHhHHHHHH
Q 026145 100 CGTPARASEILMVLC---GIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFG-GIHVLYKDRCLARL 175 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~la~~~~ 175 (243)
.|++.+|++-+.... ...|.+..-+...+...+.+|......+.|+.|...|..|.+..... ..+-...++|..|.
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL 415 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYL 415 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Confidence 346777766554433 33332223344677788889999999999999999999999875442 22345678899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 176 TMGNFSAALEDVREALELAPNY----------TEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..++-+.-.+.++. +.|.+ ..+++..|...+.++++.||...+.+.++..
T Consensus 416 ~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 416 RIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 98776554444432 45542 3467788888899999999999999999876
No 318
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.76 E-value=0.061 Score=45.73 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Q 026145 132 RKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAM 211 (243)
Q Consensus 132 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 211 (243)
...+.+....|+|+.+.....-+-..-.... .+...+-..+..++++++|.....-.+...-.+++...--+..-..+
T Consensus 327 ~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~--~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l 404 (831)
T PRK15180 327 QLRSVIFSHLGYYEQAYQDISDVEKIIGTTD--STLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADAL 404 (831)
T ss_pred HHHHHHHHHhhhHHHHHHHhhchhhhhcCCc--hHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHH
Confidence 3456667777888888777654443322221 34444556667788888888887777765555666666566666778
Q ss_pred CCHHHHHHHHHHHhccCCCchhhh
Q 026145 212 DQYDAAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 212 g~~~~A~~~~~~al~~~p~~~~~~ 235 (243)
|-+++|.-.+++.+.++|.....|
T Consensus 405 ~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 405 QLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred hHHHHHHHHHHHHhccCChhcccc
Confidence 888999999999999988654433
No 319
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.71 E-value=0.072 Score=35.12 Aligned_cols=55 Identities=16% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 175 LTMGNFSAALEDVREALELAP---------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
.+.++|..|++.+.+.+.... ....+..++|.++...|++++|+..+++++++-.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 455666666555555553321 1234667777888888888888888888777643
No 320
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.67 E-value=0.075 Score=37.97 Aligned_cols=73 Identities=14% Similarity=-0.009 Sum_probs=60.1
Q ss_pred cCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 100 CGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 100 ~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
.++++++..+++..-...| ..+..-..-|..++..|+|.+|+..+....+..+..+ ..--.++.|+..+|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP-------~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p--~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRP-------NLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP--YGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCC-------CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch--HHHHHHHHHHHhcCC
Confidence 3488999999988777777 6677777889999999999999999999998887755 555567888888887
Q ss_pred HH
Q 026145 180 FS 181 (243)
Q Consensus 180 ~~ 181 (243)
.+
T Consensus 94 p~ 95 (153)
T TIGR02561 94 AE 95 (153)
T ss_pred hH
Confidence 54
No 321
>PRK13669 hypothetical protein; Provisional
Probab=95.62 E-value=0.13 Score=32.25 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=49.6
Q ss_pred EEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCCCCCCC---CCCeEEEecCCeEEEecCCHhHHHHHHHHHhcCCC
Q 026145 42 ELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCLGRCG---AGPNLVALPDGVVVGHCGTPARASEILMVLCGIKS 118 (243)
Q Consensus 42 ~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc~g~c~---~~p~~~~~~~g~~~~~~~~~~~a~~~l~~~l~~~~ 118 (243)
.|-+|.+. ...|++.+.+.|++ -+++.|...||++.|+ ..|-+.+ +|..-... ++++..+-+.+.+..+|
T Consensus 4 iVEfC~sN--l~~G~~~~~~~Le~--dP~~dVie~gCls~CG~C~~~~FAlV--ng~~V~a~-t~eeL~~kI~~~i~e~~ 76 (78)
T PRK13669 4 IVEFCVSN--LASGSQAAFEKLEK--DPNLDVLEYGCLGYCGICSEGLFALV--NGEVVEGE-TPEELVENIYAHLEENP 76 (78)
T ss_pred eeeehhcc--hhhhHHHHHHHHHh--CCCceEEEcchhhhCcCcccCceEEE--CCeEeecC-CHHHHHHHHHHHHhhcC
Confidence 36667644 34688888888854 3578999999999877 5677655 77666655 88888777777776553
No 322
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.60 E-value=0.094 Score=34.57 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 026145 137 AEFEKANFSEADGFLSQAIELKPFGG-------IHVLYKDRCLARLTMGNFSAALEDVREALELAP 195 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 195 (243)
...+.++|.+|++.+.+.+....... ...+..++|.++...|++++|+..+++++++..
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34678999999988888876643221 246778899999999999999999999998754
No 323
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.29 Score=42.68 Aligned_cols=101 Identities=18% Similarity=0.041 Sum_probs=82.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHH-HHHhCCCcHHHHHHH------HH
Q 026145 134 RAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE-ALELAPNYTEAYICQ------GD 206 (243)
Q Consensus 134 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~l------a~ 206 (243)
+...+...++...+......++..+|++. .++.+++......|....++..+.. +....|++......+ +.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENC--PAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGR 150 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccc--hHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHH
Confidence 45555567888888889999999999987 8999998888877777666666655 888889887665555 88
Q ss_pred HHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 207 VFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 207 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
....+|+..++...+.++..+.|+++++..
T Consensus 151 ~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 151 YLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 888999999999999999999999876643
No 324
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.074 Score=46.67 Aligned_cols=75 Identities=15% Similarity=0.177 Sum_probs=64.4
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY------TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
+..++.+-|.-+++..+|..++++|...++--|.+ +.....++.||..+.+.+.|.+.+++|-+.+|.++-...
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence 34677788999999999999999999999877754 456778999999999999999999999999998876554
Q ss_pred h
Q 026145 237 F 237 (243)
Q Consensus 237 ~ 237 (243)
+
T Consensus 433 ~ 433 (872)
T KOG4814|consen 433 L 433 (872)
T ss_pred H
Confidence 3
No 325
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.37 E-value=0.5 Score=39.45 Aligned_cols=127 Identities=8% Similarity=-0.014 Sum_probs=96.6
Q ss_pred HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC-
Q 026145 103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA--NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN- 179 (243)
Q Consensus 103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~- 179 (243)
.+.-+.+...++..+| +...+|+.+..++.+.+ ++..-++..+++++.+|.+- .+|..+=.+......
T Consensus 91 ld~eL~~~~~~L~~np-------ksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNf--h~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 91 LDEELKYVESALKVNP-------KSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNF--HAWHYRRFVVEQAERS 161 (421)
T ss_pred hHHHHHHHHHHHHhCc-------hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccc--cchHHHHHHHHHHhcc
Confidence 3444556667778888 88899999999998765 47888999999999999986 677666555543332
Q ss_pred ---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH------cC------CHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 180 ---FSAALEDVREALELAPNYTEAYICQGDVFLA------MD------QYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 180 ---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~------~g------~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
..+-+++..+++.-++.+-.+|..+..++.. .| ....-.+....|+--+|+++.+|.+.
T Consensus 162 ~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 162 RNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred cccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 5677888899999999999999998887762 33 13345667778888899999998764
No 326
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.35 E-value=1.1 Score=35.97 Aligned_cols=115 Identities=14% Similarity=0.001 Sum_probs=86.3
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHH-HHHHHHHHHHHHHh-----c--CHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLE-ALALRKRAEAEFEK-----A--NFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~-~~~~~~~a~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
+..+|...+.++...+. .. ....+.+|..+..- - +...|...|.++-... ++ .+.+.+|.+
T Consensus 128 d~~~A~~~~~~Aa~~g~-------~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~--~a~~~lg~~ 196 (292)
T COG0790 128 DLVKALKYYEKAAKLGN-------VEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NP--DAQLLLGRM 196 (292)
T ss_pred CHHHHHHHHHHHHHcCC-------hhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence 88999999999887764 22 33466677666543 1 3347899999887766 33 788889988
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHhccCCC
Q 026145 174 RLT----MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD---------------QYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 174 ~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------~~~~A~~~~~~al~~~p~ 230 (243)
|.. ..++.+|..+|.++-+... ..+.+.++ +++..| +...|..++.++....+.
T Consensus 197 y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 197 YEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 854 4589999999999998776 88899999 666555 778888888887766544
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.33 E-value=1.1 Score=35.93 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145 144 FSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223 (243)
Q Consensus 144 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 223 (243)
|..-+....++++.. ...++..++..+...++++.++..+++.+..+|.+-.+|..+-..|...|+...|+..|.+
T Consensus 137 f~~WV~~~R~~l~e~----~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 137 FDEWVLEQRRALEEL----FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 555555555555432 2367888888899999999999999999999999999999999999999999999988888
Q ss_pred Hhc
Q 026145 224 CLQ 226 (243)
Q Consensus 224 al~ 226 (243)
.-.
T Consensus 213 l~~ 215 (280)
T COG3629 213 LKK 215 (280)
T ss_pred HHH
Confidence 765
No 328
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.31 E-value=0.64 Score=38.22 Aligned_cols=118 Identities=9% Similarity=-0.026 Sum_probs=85.7
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHH---HHHHHcC
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRC---LARLTMG 178 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la---~~~~~~~ 178 (243)
..+.-+.++++++..+| .....+...-....+..+.++....+++++..+|.+. ..|..+- +..+..-
T Consensus 46 ~~E~klsilerAL~~np-------~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~--~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 46 LAERKLSILERALKHNP-------DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP--ELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHHHHhccC
Confidence 45677889999998887 5555555555555677788888999999999999876 5554332 2222334
Q ss_pred CHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 179 NFSAALEDVREALELAP------------------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.++.....|.+++..-. .....+.++.......|..+.|+..++..++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 57788888888775421 013457778888899999999999999999986
No 329
>COG4759 Uncharacterized protein conserved in bacteria containing thioredoxin-like domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.07 Score=42.20 Aligned_cols=71 Identities=27% Similarity=0.495 Sum_probs=56.1
Q ss_pred cEEEEccCC----ccCccCHHHHHHHHHh----cCCCcEEEEeeCCCCCCCCCCeEEEecCCeEEEecCCHhHHHHHHHH
Q 026145 41 KELRVCTNR----TCRRQGSMQILETLSS----LAPPEVAVKSCGCLGRCGAGPNLVALPDGVVVGHCGTPARASEILMV 112 (243)
Q Consensus 41 ~~i~vC~~~----~c~~~G~~~~~~~l~~----~g~~~v~v~~~gc~g~c~~~p~~~~~~~g~~~~~~~~~~~a~~~l~~ 112 (243)
+.|+||+.. +|..-|- -+++.++. +.++.++|=.+...|.-..+|+++..|.|..|.+. +++....++.+
T Consensus 132 RdiLVCTHgn~D~cCarfG~-P~Y~~~r~~~a~l~~~~lRvWq~SHfgGHrFAPTlidlP~GqyyG~L-d~~~~~~l~~r 209 (316)
T COG4759 132 RDILVCTHGNVDVCCARFGY-PFYQQLRAQYADLNLENLRVWQSSHFGGHRFAPTLIDLPQGQYYGHL-DPESLDSLLTR 209 (316)
T ss_pred ceEEEecCCChhhhhhhcCc-HHHHHHHHhhhhccccceEEEEecccCccccCchhhcCCCCceeeec-CHHHHHHHHhc
Confidence 579999988 6766663 34444444 56668999999999999999999999999999999 88877777664
Q ss_pred H
Q 026145 113 L 113 (243)
Q Consensus 113 ~ 113 (243)
.
T Consensus 210 ~ 210 (316)
T COG4759 210 T 210 (316)
T ss_pred c
Confidence 3
No 330
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.25 E-value=0.47 Score=38.12 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=72.2
Q ss_pred HHhcCHHHHHHHHHHhhccC----CCCc--hHHHHHhHHHHHHHcC-CHHHHHHHHHHHHHh----CC---Cc-------
Q 026145 139 FEKANFSEADGFLSQAIELK----PFGG--IHVLYKDRCLARLTMG-NFSAALEDVREALEL----AP---NY------- 197 (243)
Q Consensus 139 ~~~~~~~~A~~~~~~al~~~----p~~~--~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~----~p---~~------- 197 (243)
.++|+++.|..++.++-... |+.. ++..+++.|...+..+ ++++|..+++++.++ .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46899999999999987654 3321 4678999999999999 999999999999987 22 11
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHHhccCCCchhhh
Q 026145 198 TEAYICQGDVFLAMDQYD---AAEKSYSTCLQIDPSIRRSK 235 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~ 235 (243)
..++..++.+|...+.++ +|...++.+-...|+.+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~ 124 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF 124 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence 246778899998888755 45555555555667766665
No 331
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.17 E-value=0.054 Score=29.08 Aligned_cols=29 Identities=34% Similarity=0.389 Sum_probs=16.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
+++..+|.+-+..++|++|+..|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666666666665554
No 332
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.16 E-value=0.53 Score=39.22 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=77.7
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
++..|.+.-.++.+..| ....+-...+..+++.|+..++-..++.+.+..|... .+ +.+.+.+.|+-.
T Consensus 244 dp~~Ar~~A~~a~KL~p-------dlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~---ia--~lY~~ar~gdta 311 (531)
T COG3898 244 DPASARDDALEANKLAP-------DLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD---IA--LLYVRARSGDTA 311 (531)
T ss_pred ChHHHHHHHHHHhhcCC-------ccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH---HH--HHHHHhcCCCcH
Confidence 67777777778888877 6666777788899999999999999999999888753 21 122233333322
Q ss_pred H-HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Q 026145 182 A-ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPS 230 (243)
Q Consensus 182 ~-A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 230 (243)
. -++-..+.-.+.|++.+..+..+..-+.-|++..|...-+.+....|.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 1 122233333456777777777777777777777776666666666664
No 333
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=0.091 Score=45.17 Aligned_cols=87 Identities=15% Similarity=-0.078 Sum_probs=69.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE---KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~ 178 (243)
....++..+.+++...| .....+.+.+.++++ .|+.-.|+.....|++++|... .+++.++.++..++
T Consensus 389 ~~~~~i~~~s~a~q~~~-------~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~--kah~~la~aL~el~ 459 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVP-------DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ--KAHFRLARALNELT 459 (758)
T ss_pred HHHHHHHHHHHHhhhcc-------chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH--HHHHHHHHHHHHHh
Confidence 44555566666665555 556667777777776 4688899999999999999865 99999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 026145 179 NFSAALEDVREALELAPNY 197 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p~~ 197 (243)
++.+|+++...+....|.+
T Consensus 460 r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTD 478 (758)
T ss_pred hHHHhhhhHHHHhhcCchh
Confidence 9999999998887777854
No 334
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.11 E-value=0.12 Score=41.25 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=52.6
Q ss_pred HHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145 147 ADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA 210 (243)
Q Consensus 147 A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 210 (243)
|..+|.+|+.+.|.++ ..|+.+|.+....++.-+|+-+|-+++......+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G--~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG--NPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS--HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC--CcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6889999999999988 9999999999999999999999999997665567888888888877
No 335
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.10 E-value=0.13 Score=46.12 Aligned_cols=107 Identities=21% Similarity=0.327 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--hHHHHHhHHHHHHH--cCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--IHVLYKDRCLARLT--MGNFSAALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~la~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~la 205 (243)
....-++.++..+++.+|..-|..++.+-|.+. .+....+.+.++.. +++|..++....-++...|....+++..+
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 445668889999999999999999999888442 34566677777654 56899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
.+|...++.+-|++.+.-....+|.+..+..
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~~e 165 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSASE 165 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 9999999999999998888889999865543
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.02 E-value=0.04 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 026145 200 AYICQGDVFLAMDQYDAAEKSY 221 (243)
Q Consensus 200 ~~~~la~~~~~~g~~~~A~~~~ 221 (243)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555444
No 337
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.82 E-value=0.14 Score=47.78 Aligned_cols=106 Identities=15% Similarity=0.077 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhccCCCCc-hHHHHHhHHHHHHHc----C---CHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 133 KRAEAEFEKANFSEADGFLSQAIELKPFGG-IHVLYKDRCLARLTM----G---NFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~la~~~~~~----~---~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
....++...+.|++|+..|.+.-...|.-. -.++.+..|.+.+.. + .+.+|+..|++.- -.|.-|--|...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 345566777899999999999888887532 136778888877643 2 4677777776643 346666678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 205 GDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 205 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
|.+|..+|+++|-++.|.-|++-.|++|..-...-
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRD 593 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 99999999999999999999999998887665543
No 338
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=94.80 E-value=0.51 Score=38.47 Aligned_cols=133 Identities=12% Similarity=0.112 Sum_probs=93.2
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHH---HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcC
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAE---AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMG 178 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~---~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~ 178 (243)
-.++....+.+++.... +.. ...++-..-.. -....-+|..-..+|+-.....|+. .+-.|++....+..
T Consensus 271 lI~eg~all~rA~~~~~-pGP---YqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP---vV~LNRAVAla~~~ 343 (415)
T COG4941 271 LIDEGLALLDRALASRR-PGP---YQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP---VVTLNRAVALAMRE 343 (415)
T ss_pred HHHHHHHHHHHHHHcCC-CCh---HHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC---eEeehHHHHHHHhh
Confidence 56777788888775442 222 22222111111 1223568888899999988888876 46778888888777
Q ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhhc
Q 026145 179 NFSAALEDVREALEL--APNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVSS 241 (243)
Q Consensus 179 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~i 241 (243)
=...++...+-.... -..+...+-..|..+.++|+.++|...|.+++.+.++..+......+.
T Consensus 344 Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 344 GPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred hHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 788888887766543 123455677889999999999999999999999999887766655543
No 339
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.80 E-value=0.11 Score=27.45 Aligned_cols=21 Identities=10% Similarity=0.089 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHcCCHHHHHHH
Q 026145 166 LYKDRCLARLTMGNFSAALED 186 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~ 186 (243)
.++.+|..+...|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344455555555555555555
No 340
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.80 E-value=1.1 Score=38.22 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhhccCCCCc-----------------------------------------
Q 026145 125 NLEALALRKRAEAEFEKAN-FSEADGFLSQAIELKPFGG----------------------------------------- 162 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~----------------------------------------- 162 (243)
...+..+..-|.-+.+.|. -++|+..++.++...|.+.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 3455566666777777777 7778888887777665541
Q ss_pred ---hHHHHHhH--HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 163 ---IHVLYKDR--CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 163 ---~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
..+.-+.+ |..++..|+|.++.-+-.-..++.| ++.++..+|.++....+|++|..++...
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 01111222 4566789999999999999999999 8999999999999999999999987654
No 341
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.73 E-value=0.12 Score=41.25 Aligned_cols=58 Identities=16% Similarity=0.051 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 183 ALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 183 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
|..+|.+|+.+.|++...|.++|.+....|+.=+|+-+|-+++....-.+.+..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~ 58 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQK 58 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999776555666655543
No 342
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.70 E-value=0.057 Score=28.99 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELK 158 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 158 (243)
..+..+|.+....++|++|+..|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 357789999999999999999999999874
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.56 E-value=0.5 Score=29.83 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=49.0
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC---QGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
-....|.-++...+.++|+..++++++..++.+.-+.. +..+|...|+|++++++-.+-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777889999999999999999988877665544 457788999999998887666554
No 344
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.42 E-value=0.67 Score=38.73 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC-C----cHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPF-GGIHVLYKDRCLARLTMGNFSAALEDVREALELAP-N----YTEAYI 202 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~----~~~~~~ 202 (243)
.+++.....+.++|-+..|.++.+-.+.++|. |+ ..+.+.+=....+.++|+=-+..++....... + .|...+
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP-~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~ 182 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP-LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF 182 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc-chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH
Confidence 34566677788999999999999999999998 64 33444455556788888877887777655211 1 235677
Q ss_pred HHHHHHHHcCCH---------------HHHHHHHHHHhccCCCc
Q 026145 203 CQGDVFLAMDQY---------------DAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 203 ~la~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 231 (243)
..+.+++.+++- ++|...+++|+...|.-
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 888889999888 89999999999988753
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.35 E-value=2.1 Score=35.86 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc--------------C------------CCCc-hHHHHHhHHHHHHHcC
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIEL--------------K------------PFGG-IHVLYKDRCLARLTMG 178 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~------------p~~~-~~~~~~~la~~~~~~~ 178 (243)
.....+.+++.++..+|+++.|.++.++||=. + ++|. +..+.+.....+.+.|
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG 117 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRG 117 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcC
Confidence 77889999999999999999999999998622 1 1111 2345566678888999
Q ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHH-HHHHHHHcCCHHHHHHHHHHHh
Q 026145 179 NFSAALEDVREALELAPN-YTEAYIC-QGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~p~-~~~~~~~-la~~~~~~g~~~~A~~~~~~al 225 (243)
-+..|+++.+-.+.++|. |+-.... +=....+.++|+--++.++...
T Consensus 118 ~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 118 CWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 999999999999999998 6654333 3333356666765565555543
No 346
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.30 E-value=0.07 Score=42.84 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHh-HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKD-RCLARLTMGNFSAALEDVREALELAPNYTEAYIC 203 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 203 (243)
.++..|...+....+.+.|.+--..|.+++..+|.+. +.|.. -+.-+...++++.+...+.++++.+|.+|..|..
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv--dlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV--DLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc--eeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 5566777777777788899999999999999999988 88876 4566778999999999999999999998876553
No 347
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.25 E-value=0.42 Score=36.08 Aligned_cols=79 Identities=14% Similarity=0.017 Sum_probs=59.7
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHcCCHH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN----YTEAYICQGDVFLAMDQYD 215 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~ 215 (243)
.+-.-++|...|-++-....-+ .++..+.+|..|. ..+.++++..+.+++++.+. +++.+..|+.++..+|+++
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3445677888887765443322 2478888887765 77899999999999997653 4889999999999999999
Q ss_pred HHHHH
Q 026145 216 AAEKS 220 (243)
Q Consensus 216 ~A~~~ 220 (243)
.|.-+
T Consensus 196 ~AYiw 200 (203)
T PF11207_consen 196 QAYIW 200 (203)
T ss_pred hhhhh
Confidence 98643
No 348
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.11 E-value=0.27 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH--HHhccCC
Q 026145 200 AYICQGDVFLAMDQYDAAEKSYS--TCLQIDP 229 (243)
Q Consensus 200 ~~~~la~~~~~~g~~~~A~~~~~--~al~~~p 229 (243)
.++.+|-.+...|++++|+..++ -+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555522 4444444
No 349
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.90 E-value=0.6 Score=37.32 Aligned_cols=66 Identities=30% Similarity=0.235 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
....++..++..+...++++.+++.+++.+..+|-+- ..|..+-..|...|+...|+..|++.-+.
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E--~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE--PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch--HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3455677888999999999999999999999999976 89999999999999999999999987764
No 350
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.88 E-value=0.96 Score=38.47 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 190 (243)
....-|..++.+|+|.++.-+-.-..+++| ++ .+|..+|.|++..++|.+|..++...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~--~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SP--QAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cH--HHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 344456678899999999998888889999 44 89999999999999999999999764
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.87 E-value=1.5 Score=33.17 Aligned_cols=59 Identities=10% Similarity=-0.010 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc----hhhhhhhhhc
Q 026145 181 SAALEDVREALELAP--NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI----RRSKSFKVSS 241 (243)
Q Consensus 181 ~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~~a~i 241 (243)
++|...|-++- -.| ++++..+.+|..|. .-+.++|+..+.+++++.+.+ ++....++.+
T Consensus 123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~ 187 (203)
T PF11207_consen 123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASI 187 (203)
T ss_pred HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 45555554432 223 45777777776666 455788888888888876543 4555444443
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.82 E-value=0.11 Score=25.16 Aligned_cols=24 Identities=21% Similarity=0.009 Sum_probs=14.8
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVR 188 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~ 188 (243)
.+..++|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666666554
No 353
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.57 E-value=0.54 Score=31.86 Aligned_cols=90 Identities=17% Similarity=0.129 Sum_probs=65.7
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHhhccCCCCchHHH
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-----------ANFSEADGFLSQAIELKPFGGIHVL 166 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~ 166 (243)
...|+.-+|.++++..+.... ... .........|.++.+. .-.-.+++.|.++..+.|..+ ..
T Consensus 7 ~~rGnhiKAL~iied~i~~h~-~~~---~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A--~~ 80 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHG-EDE---SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA--HS 80 (111)
T ss_pred HHccCHHHHHHHHHHHHHHcc-CCC---chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH--HH
Confidence 456799999999999885553 111 1124455566666433 224578899999999999965 88
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
++.+|.-+-....|+++..-.+++|.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 888888877778899999999988874
No 354
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.56 E-value=1.6 Score=30.13 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=60.5
Q ss_pred CCHhHHHHHHHHHhcCC---CCCcch--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-------CCCCc--hHHH
Q 026145 101 GTPARASEILMVLCGIK---SDHDAA--KNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-------KPFGG--IHVL 166 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~---~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~--~~~~ 166 (243)
|.+++|..-+.+++... |..+.. .--++..+-.++..+...|+|++++..-+++|.. +.+.. -..+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 46677776666655221 101111 1245666777888899999999988887777743 44433 1235
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
-++++..+-.+|+.++|+..|+.+-++
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 578899999999999999999988754
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.55 E-value=2.6 Score=37.47 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=80.8
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH--
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKA---NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT-- 176 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~-- 176 (243)
+.+.|..++..+-..+. +.+.+.+|..+.... ++..|..+|..|....-. .+.+.+|.||..
T Consensus 308 d~~~A~~~~~~aA~~g~---------~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~----~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN---------PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI----LAIYRLALCYELGL 374 (552)
T ss_pred cHHHHHHHHHHHHhcCC---------chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh----HHHHHHHHHHHhCC
Confidence 67889999988876664 557788888887654 688999999999876543 678888888863
Q ss_pred --cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHhc
Q 026145 177 --MGNFSAALEDVREALELAPNYTEAYICQGDVFLAM-DQYDAAEKSYSTCLQ 226 (243)
Q Consensus 177 --~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 226 (243)
..+...|..++.++-+.+ ++.+.+.++..+... ++++.+...+....+
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAE 425 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHH
Confidence 347899999999998877 466666666655433 666666555544433
No 356
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=93.46 E-value=1.2 Score=35.12 Aligned_cols=60 Identities=12% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
.....+|..|+..|+|++|+..++.+...... .......+..|+..+|+.+..+...-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45556777777777777777777777554321 1345566677777777777666554443
No 357
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.34 E-value=2.3 Score=34.14 Aligned_cols=60 Identities=20% Similarity=0.119 Sum_probs=49.6
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 224 (243)
..+..-+..|...|.+.+|++..++++.++|-+...+..+-..+..+|+--++...|++.
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344455778889999999999999999999999888999999999999877776666654
No 358
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=2.8 Score=36.15 Aligned_cols=130 Identities=13% Similarity=0.109 Sum_probs=92.9
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--------hH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--------IH 164 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--------~~ 164 (243)
.|.....++-++.|...|..+.+... .....+....++|.+|...++-+.--+..+ .+.|.+. .+
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~----~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTE----SIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEA 445 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhh----HHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHH
Confidence 45556667789999999988876552 112355566788999998776554333333 3455432 24
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
.+++..|...+..+++.+|-..+.+.++.... .+-.+..++.+....|+..++.+...-++.+..
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 67888899999999999999999999987521 133566788888999999999888777776643
No 359
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.90 E-value=3.9 Score=34.43 Aligned_cols=99 Identities=12% Similarity=0.084 Sum_probs=78.3
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----C
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN--FSAALEDVREALELAPNYTEAYICQGDVFLAMD----Q 213 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~ 213 (243)
+..-.++-+.+...++..+|+.- .+|+.+..++.+.+. +..-++..+++++.+|.+..+|..+=.+..... .
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY--~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~ 164 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSY--GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL 164 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhH--HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence 34467777888999999999965 999999999987764 688999999999999998777766554444333 3
Q ss_pred HHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 214 YDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 214 ~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
..+-+++..+++.-+++|-.+|.++..
T Consensus 165 ~~~El~ftt~~I~~nfSNYsaWhyRs~ 191 (421)
T KOG0529|consen 165 EKEELEFTTKLINDNFSNYSAWHYRSL 191 (421)
T ss_pred chhHHHHHHHHHhccchhhhHHHHHHH
Confidence 566678899999999999888877653
No 360
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.78 E-value=2.4 Score=31.54 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=55.8
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPN---YTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
+..++..+|..|.+.|+++.|++.|.++...... ..+.++++-.+....+++......+.++-.+-
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999998775432 24678888888899999999999998887654
No 361
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=2.2 Score=35.81 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC----CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH--hCC--Cc
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK----PFGGIHVLYKDRCLARLTMGNFSAALEDVREALE--LAP--NY 197 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p--~~ 197 (243)
..+..|+.+...+-..++...-...+...+... ...+.+...+.+-..|+..+.|+.|.....++.- ... .+
T Consensus 167 i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ 246 (493)
T KOG2581|consen 167 IAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEW 246 (493)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHH
Confidence 345567777777777888666666665555432 1222345566677888999999999988877641 111 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
+..++.+|.+..-+++|..|.+++-+|+...|++
T Consensus 247 ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 247 ARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 5567788999999999999999999999999983
No 362
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.12 E-value=0.76 Score=43.80 Aligned_cols=101 Identities=22% Similarity=0.243 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC--------CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK--------PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA--- 194 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 194 (243)
..+..+..++..+...+++++|+..-.++.-+. |+ ....|.+++...+..++...|+..+.+++.+.
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~--t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN--TKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH--HHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 677889999999999999999999988886543 33 34788999999999999999999999988763
Q ss_pred -----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 195 -----PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 195 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
|.-.....+++.++...++++.|+.+++.|++.+
T Consensus 1049 ~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1049 SGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred cCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4445567889999999999999999999998854
No 363
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=91.93 E-value=3.7 Score=35.87 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=64.7
Q ss_pred HHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145 111 MVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190 (243)
Q Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 190 (243)
++-+..+| .+..+|+.+-..+..+ .+++..+.|++.+...|..+ .+|.......++.++|+.....|.++
T Consensus 10 ~~rie~nP-------~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~--r~W~~yi~~El~skdfe~VEkLF~RC 79 (656)
T KOG1914|consen 10 RERIEENP-------YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP--RAWKLYIERELASKDFESVEKLFSRC 79 (656)
T ss_pred HHHHhcCC-------ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45566777 8899999998887766 99999999999999999988 99999999999999999999999999
Q ss_pred HHh
Q 026145 191 LEL 193 (243)
Q Consensus 191 l~~ 193 (243)
|..
T Consensus 80 Lvk 82 (656)
T KOG1914|consen 80 LVK 82 (656)
T ss_pred HHH
Confidence 863
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.92 E-value=0.39 Score=26.71 Aligned_cols=25 Identities=8% Similarity=0.284 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 202 ICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 202 ~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
+.+|.+|..+|+.+.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566666666666666666666663
No 365
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=91.61 E-value=1.1 Score=33.71 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCc
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 231 (243)
.+..++..++.++..| ++..+.+++.++...|+.++|..+.+++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 4455666777777777 67888889999999999999999999999999944
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.58 E-value=0.88 Score=34.93 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=52.8
Q ss_pred HHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 026145 135 AEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT 198 (243)
Q Consensus 135 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 198 (243)
...+.+.++.++|+.....-++..|.+. .....+-..+.-.|+|++|...++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda--~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA--GGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc--cchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 4567788999999999999999999887 7777777888889999999999999888888764
No 367
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.28 E-value=3.2 Score=39.20 Aligned_cols=125 Identities=14% Similarity=0.012 Sum_probs=85.6
Q ss_pred CCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHhhccCCCCchHHHHHhHHHH
Q 026145 101 GTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEK-------ANFSEADGFLSQAIELKPFGGIHVLYKDRCLA 173 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~-------~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~ 173 (243)
..++.|...|++.-...| . +..--.+.+..|.++..+ ..+++|+..|++.-.. |.-+ -=|...|.+
T Consensus 489 ~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 561 (932)
T PRK13184 489 KLYDQALIFYRRIRESFP--G--RKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG-VGAP--LEYLGKALV 561 (932)
T ss_pred HHHHHHHHHHHHHhhcCC--C--cccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC-CCCc--hHHHhHHHH
Confidence 377888888877665543 1 113345677777776643 3578888888875543 4433 568889999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 174 RLTMGNFSAALEDVREALELAPNYTEAY-------ICQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 174 ~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
|.++++|++-++.+.-|++..|++|..- +.+-.+.+. ....|..+.--++.+-|.....
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 627 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKISS 627 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999999999999887543 333333332 2356677777788888865443
No 368
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=91.27 E-value=2.7 Score=37.97 Aligned_cols=86 Identities=17% Similarity=0.155 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 026145 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYIC 203 (243)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 203 (243)
....-.++.++|..+.....|++|.++|.+.-. .-++..|++++..|++-.... ..-|++.+.+-.
T Consensus 792 D~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la----~~Lpe~s~llp~ 857 (1189)
T KOG2041|consen 792 DEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLA----RTLPEDSELLPV 857 (1189)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHH----HhcCcccchHHH
Confidence 345566788888888888888888888875421 223355666666665533322 234667677777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 026145 204 QGDVFLAMDQYDAAEKSYST 223 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~ 223 (243)
+|.++...|.-++|.+.|.+
T Consensus 858 ~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 858 MADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhhchHHHHHHHHHh
Confidence 77777777777777666544
No 369
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=91.10 E-value=0.25 Score=40.35 Aligned_cols=81 Identities=21% Similarity=0.070 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLA 210 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 210 (243)
..+.+.+..+.+.+..|+..-..++..++... .+++.++..+..+.++++|++++..+....|++....-.+..+-..
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t--ka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKT--KAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhC--cHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 44566777788889999888888888788766 8999999999999999999999999999999987765555544443
Q ss_pred cCC
Q 026145 211 MDQ 213 (243)
Q Consensus 211 ~g~ 213 (243)
..+
T Consensus 356 ~~~ 358 (372)
T KOG0546|consen 356 KKQ 358 (372)
T ss_pred HHH
Confidence 333
No 370
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.90 E-value=3 Score=32.84 Aligned_cols=60 Identities=17% Similarity=0.103 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREA 190 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~a 190 (243)
...+|..|+..|+|++|+.+|+.+....-.+. ...+...+..|+..+|+.+..+...-+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34567777777777777777777755433221 2355566667777777776666555443
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.87 E-value=2.3 Score=36.65 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=73.3
Q ss_pred HHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 026145 138 EFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA 217 (243)
Q Consensus 138 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 217 (243)
....|+.-.|-.....++...|.++ .....++.+...+|+|+.|...+.-+-.+-.....+..-+-..+..+|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 3457899999999999999999987 77777899999999999999988766554444445555566778899999999
Q ss_pred HHHHHHHhccCCCchhh
Q 026145 218 EKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 218 ~~~~~~al~~~p~~~~~ 234 (243)
...-.-.+.-.-++++.
T Consensus 377 ~s~a~~~l~~eie~~ei 393 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEV 393 (831)
T ss_pred HHHHHHHhccccCChhh
Confidence 88777766655455544
No 372
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.66 E-value=13 Score=33.67 Aligned_cols=128 Identities=17% Similarity=0.047 Sum_probs=86.6
Q ss_pred HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhhccCCCCch----HHHHHhHHHHHHHc
Q 026145 103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF-EKANFSEADGFLSQAIELKPFGGI----HVLYKDRCLARLTM 177 (243)
Q Consensus 103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~la~~~~~~ 177 (243)
...++.-++.++.. ........+...+.+|.+++ ...+++.|..++.+++.+...+.+ ..+.+.++.++.+.
T Consensus 37 I~~ai~CL~~~~~~---~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~ 113 (608)
T PF10345_consen 37 IATAIKCLEAVLKQ---FKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKT 113 (608)
T ss_pred HHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Confidence 34456666655532 23445578889999999988 689999999999999887654332 23345667888777
Q ss_pred CCHHHHHHHHHHHHHhCCC---c-HHHHHHH--HHHHHHcCCHHHHHHHHHHHhccC--CCchhh
Q 026145 178 GNFSAALEDVREALELAPN---Y-TEAYICQ--GDVFLAMDQYDAAEKSYSTCLQID--PSIRRS 234 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 234 (243)
+... |...+++.++...+ . +...+.+ ...+...+++..|.+.++...... +.++.+
T Consensus 114 ~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 114 NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 7777 99999999876543 2 2222222 222333479999999999988765 344443
No 373
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=90.56 E-value=1.8 Score=37.65 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=63.4
Q ss_pred HHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 152 SQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 152 ~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
++-++.+|.|. ..|+.+-.-+. .+-+++..+.|++.+...|..+.+|........+.++|+.-+..|.+++.
T Consensus 10 ~~rie~nP~di--~sw~~lire~q-t~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLv 81 (656)
T KOG1914|consen 10 RERIEENPYDI--DSWSQLIREAQ-TQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLV 81 (656)
T ss_pred HHHHhcCCccH--HHHHHHHHHHc-cCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56688899987 88887765554 44999999999999999999999999999999999999999999999885
No 374
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.15 E-value=12 Score=34.14 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=72.0
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
+++.|...+........ . ........+..+|......+..++|..++..+.....++ ...-.+.......++++
T Consensus 256 d~~~A~~~~~~~~~~~~-~--~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~---~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 256 DAENARLMIPSLVRAQK-L--NEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQST---SLLERRVRMALGTGDRR 329 (644)
T ss_pred CHHHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCc---HHHHHHHHHHHHccCHH
Confidence 55666666654322221 1 111222334444544444433667777777765443332 33333344555888998
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 182 AALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.+...+...-..........+.+|.++..+|+.++|...|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 887777764333335677899999999999999999999999754
No 375
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.56 E-value=1.8 Score=30.85 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=33.9
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYD 215 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 215 (243)
+.....+...+..|+|.-|.+..+.++..+|++..+...++.++.++|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 345556666777777777777777777777877777777777777776543
No 376
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=89.41 E-value=1.4 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.199 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 180 FSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
++.|...|++++...|.++..|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3444444444444444444444433
No 377
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=89.40 E-value=4.6 Score=34.03 Aligned_cols=133 Identities=13% Similarity=0.100 Sum_probs=70.9
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHH
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLAR 174 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~ 174 (243)
+-+.++.|.+...+.. .| ........++.++.+|.+..-+.+|..|.+++.+|+...|++. ...+......+-
T Consensus 221 ~n~lydqa~~lvsK~~--~p-e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ 297 (493)
T KOG2581|consen 221 HNKLYDQADKLVSKSV--YP-EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVE 297 (493)
T ss_pred hhHHHHHHHHHhhccc--Cc-cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHH
Confidence 3335666666555432 22 1122225666777788888888888888888888888888653 011222223333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHHHHhccCCCchhhhhh
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGDV--FLAMDQYDAAEKSYSTCLQIDPSIRRSKSF 237 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 237 (243)
..+|++.+-...-+..++ .....|+.|..+ ...+.++.+-++.|..-+..+....-..++
T Consensus 298 ll~geiPers~F~Qp~~~---ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRL 359 (493)
T KOG2581|consen 298 LLLGEIPERSVFRQPGMR---KSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRL 359 (493)
T ss_pred HHcCCCcchhhhcCccHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHH
Confidence 455666553332222221 122345555433 344556666677776666666554444333
No 378
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=7.2 Score=34.46 Aligned_cols=102 Identities=15% Similarity=-0.011 Sum_probs=73.9
Q ss_pred EEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHH-hhccCCCCchHHHHHh------
Q 026145 97 VGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ-AIELKPFGGIHVLYKD------ 169 (243)
Q Consensus 97 ~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~-al~~~p~~~~~~~~~~------ 169 (243)
+...++...+.-.+...+..++ ..+....++|......+..-.++..+.. +....|++. .+...
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~ 147 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVNP-------ENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA--EFLGHLIRFYQ 147 (620)
T ss_pred ccccccchhHHHHHhhhHhcCc-------ccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH--HHHhhHHHHHH
Confidence 3444455455556666777776 7777888888888877777777666655 888888875 44444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 026145 170 RCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDV 207 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 207 (243)
++.....+++..++....+++....|.++.+...+...
T Consensus 148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 148 LGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 48888889999999999999999999886655444444
No 379
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=89.21 E-value=8.7 Score=29.72 Aligned_cols=33 Identities=15% Similarity=0.029 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGG 162 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 162 (243)
....+-..+.-.|+|++|...++-+-.+.|++.
T Consensus 37 ~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 37 GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred chhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344455667778888888888888888888764
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.10 E-value=2.5 Score=33.96 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA 190 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 190 (243)
+...+..+...|.+.+|+.+.++++.++|-+. ..+..+-..+..+|+--.+...|++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e--~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSE--QDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHhccchhhhhHHHHH
Confidence 44556778899999999999999999999876 88999999999999988888777654
No 381
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.05 E-value=8.6 Score=32.46 Aligned_cols=98 Identities=17% Similarity=0.151 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC--CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC--------
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELK--PFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP-------- 195 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------- 195 (243)
..-.++..+|.-|..-|+.+.|++.|.++-..= ..+ ....+.++-.+-..+++|.....+..++... |
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh-vInm~ln~i~VSI~~~nw~hv~sy~~~A~st-~~~~~~~~q 225 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH-VINMCLNLILVSIYMGNWGHVLSYISKAEST-PDANENLAQ 225 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHhC-chhhhhHHH
Confidence 335578889999999999999999999954431 122 3467788888888999999988888888653 2
Q ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 196 -NYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 196 -~~~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
-.+.+...-|.+...+++|+.|...+-.+.
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 113456666777888889999988886654
No 382
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.98 E-value=3.6 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.074 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
.+..+...|..+-+.|++.+|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455666667777777777777777666543
No 383
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.98 E-value=14 Score=34.34 Aligned_cols=113 Identities=19% Similarity=0.127 Sum_probs=82.2
Q ss_pred CCHhHHHHHHHHHhcCCC--CCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc---hHHHHHhHHHHHH
Q 026145 101 GTPARASEILMVLCGIKS--DHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG---IHVLYKDRCLARL 175 (243)
Q Consensus 101 ~~~~~a~~~l~~~l~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~la~~~~ 175 (243)
..+++|..++.++...-+ .........+...-..|.+....++++.|++..+.++..-|.+. -..++...|.+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 377788777766543222 12223334556666778889999999999999999999887753 2356778899999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHcCC
Q 026145 176 TMGNFSAALEDVREALELAPN------YTEAYICQGDVFLAMDQ 213 (243)
Q Consensus 176 ~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~ 213 (243)
-.|++.+|.....++.+.... ...+....+.++..+|+
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999998877321 23455666888899993
No 384
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.96 E-value=5.9 Score=34.20 Aligned_cols=74 Identities=24% Similarity=0.188 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 026145 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMD 212 (243)
Q Consensus 133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 212 (243)
..+..+.++|-++.|+..- . ++ ...+.+| .+.|+.+.|.+..++ .+++..|..+|.....+|
T Consensus 300 ~i~~fL~~~G~~e~AL~~~-------~-D~--~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQFV-------T-DP--DHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHS-------S--H--HHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHhhc-------C-Ch--HHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcC
Confidence 3444555566666665442 1 11 3344333 345555555554322 234556777777777777
Q ss_pred CHHHHHHHHHHH
Q 026145 213 QYDAAEKSYSTC 224 (243)
Q Consensus 213 ~~~~A~~~~~~a 224 (243)
+++-|++.|+++
T Consensus 362 ~~~lAe~c~~k~ 373 (443)
T PF04053_consen 362 NIELAEECYQKA 373 (443)
T ss_dssp BHHHHHHHHHHC
T ss_pred CHHHHHHHHHhh
Confidence 777776666665
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.66 E-value=1.4 Score=37.34 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc-------hHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG-------IHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
+..+..++.-.|||..|++..+.. +++.... ...+++..|.+|+.+++|.+|++.|..++.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777899999999987653 2222110 126788899999999999999999998873
No 386
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.58 E-value=1.3 Score=24.66 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=22.4
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 168 KDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
+++|..|..+|+++.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5689999999999999999999985
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.43 E-value=9.9 Score=39.16 Aligned_cols=112 Identities=16% Similarity=0.073 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-CC------
Q 026145 124 KNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA-PN------ 196 (243)
Q Consensus 124 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~------ 196 (243)
....+..|.+.|.+....|.++.|....-+|.+..+. .++..+|..+...|+-..|+..+++.+..+ |+
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~----~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLP----EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc----hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 4467889999999999999999999999999888754 789999999999999999999999999654 33
Q ss_pred ----c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHhccCCCchhhhhhhh
Q 026145 197 ----Y------TEAYICQGDVFLAMDQY--DAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 197 ----~------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
. ..+.+..+......+++ ++-+..|+.+.+++|....-+.+++
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 1 12445555555566653 3346788999999996555444443
No 388
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.27 E-value=5.4 Score=34.42 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=12.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVRE 189 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~ 189 (243)
..|..+|...+..|+++-|..+|++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444444444444554444444443
No 389
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.23 E-value=0.99 Score=38.12 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=47.0
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHhC---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALELA---------PNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
...+..++..+|+|..|++.++-. .++ +-+...++..|-+|..+++|.+|+..|...+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999998643 222 23456789999999999999999999998874
No 390
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.42 E-value=0.92 Score=22.50 Aligned_cols=29 Identities=17% Similarity=0.066 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 212 DQYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 212 g~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
|+.+.|...|++++...|.++..|..+.+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56789999999999999999999876654
No 391
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=86.85 E-value=2.4 Score=38.50 Aligned_cols=77 Identities=22% Similarity=0.322 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHc
Q 026145 133 KRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNY-TEAYICQGDVFLAM 211 (243)
Q Consensus 133 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~ 211 (243)
..+.-|...|+|+-|.++|.++= ....--.+|.+.|+|.+|....++.. .|.. ...|...+.-+-..
T Consensus 770 ~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 770 EIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred HHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhh
Confidence 33444555566666666554431 11122344556666666666555543 2433 33455666667777
Q ss_pred CCHHHHHHHH
Q 026145 212 DQYDAAEKSY 221 (243)
Q Consensus 212 g~~~~A~~~~ 221 (243)
|+|.+|.+.|
T Consensus 838 gkf~eaeqly 847 (1636)
T KOG3616|consen 838 GKFAEAEQLY 847 (1636)
T ss_pred cchhhhhhee
Confidence 8877776654
No 392
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=86.83 E-value=20 Score=31.85 Aligned_cols=106 Identities=10% Similarity=0.017 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELA-PNYTEAYICQG 205 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la 205 (243)
+...|..-...-...|++....-.|++++-.=.... ..|...+.-....|+.+-|-..+..+.++. |..+..+..-+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~--efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD--EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH--HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHH
Confidence 344455555556677888888888888876544433 778888777777788887777777777654 55666777777
Q ss_pred HHHHHcCCHHHHHHHHHHHhccCCCchhh
Q 026145 206 DVFLAMDQYDAAEKSYSTCLQIDPSIRRS 234 (243)
Q Consensus 206 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 234 (243)
..-...|++..|...+++.....|..-.+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~pg~v~~ 402 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEYPGLVEV 402 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhCCchhhh
Confidence 77777888888888888887766665443
No 393
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.83 E-value=5.6 Score=28.13 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=39.0
Q ss_pred HHhHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 167 YKDRCLAR-LTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 167 ~~~la~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
|..+|.-. ...|+-++-...+....+.+..+|..+..+|.+|.+.|+..+|.+.+.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44455444 4555555555666666655566789999999999999999999999998865
No 394
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=86.54 E-value=10 Score=31.21 Aligned_cols=90 Identities=12% Similarity=-0.016 Sum_probs=57.7
Q ss_pred HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Q 026145 136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAP-------------------- 195 (243)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------------- 195 (243)
+...+..+..+-+..-..|++++|+-. .+|..++.-- .--..+|...++++++...
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA--~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECA--TAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhh--hHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 344456677777777888888888855 7776665432 2335566666666664321
Q ss_pred ---CcH--HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 196 ---NYT--EAYICQGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 196 ---~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
.+. .....++.|-.++|+..+|++.++...+..|
T Consensus 268 rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 268 RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111 2344678888888888888888887766555
No 395
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.22 E-value=17 Score=32.85 Aligned_cols=93 Identities=17% Similarity=0.237 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccC----------CCCch--------------HHHHHhHHHHHHHcCCHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELK----------PFGGI--------------HVLYKDRCLARLTMGNFSAALE 185 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------p~~~~--------------~~~~~~la~~~~~~~~~~~A~~ 185 (243)
.++.-|......+..+.|.++++++++.- +..++ .......+.+.+-.+++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 34444555566666656666666665431 11110 1345567888889999999998
Q ss_pred HHHHHHHhC---CC------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026145 186 DVREALELA---PN------YTEAYICQGDVFLAMDQYDAAEKSYS 222 (243)
Q Consensus 186 ~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~ 222 (243)
..+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 888776542 22 36789999999999999999999998
No 396
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.92 E-value=16 Score=34.10 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCC--Cc-----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPF--GG-----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNY----- 197 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~----- 197 (243)
.....++......++++|.....++...-+. .. .++..-..|.+....++++.|+...+.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3445577788889999999888877655433 11 23555667889999999999999999999987765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 198 TEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 198 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
..++..+|.+..-.|++++|....+++.+.
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 346788899999999999999999888776
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=85.90 E-value=2.8 Score=29.94 Aligned_cols=49 Identities=16% Similarity=0.132 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
......+...+..|+|.-|.++.+.++..+|++. .+...++.++.+++.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~--~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNE--EARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999999987 888888887766553
No 398
>PF12854 PPR_1: PPR repeat
Probab=85.73 E-value=2.9 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 026145 199 EAYICQGDVFLAMDQYDAAEKSYS 222 (243)
Q Consensus 199 ~~~~~la~~~~~~g~~~~A~~~~~ 222 (243)
..|..+-..|.+.|+.++|.+.+.
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444555555555544443
No 399
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.31 E-value=13 Score=35.42 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
+.+..|..+|....+.+...+|++.|-+| +++ ..|..--..-.+.|.|++-+.++.-+-
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp--s~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP--SNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc--HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34567888999999999999999988664 333 456666666667777777766665554
No 400
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=85.02 E-value=5.4 Score=36.12 Aligned_cols=73 Identities=7% Similarity=-0.022 Sum_probs=44.8
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEK 219 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 219 (243)
+.|+|-.-..+++..-.-+.+.....++.++|..+..+..|++|.++|.+.-. .-+...+|+.+.+|++-..
T Consensus 772 klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 772 KLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEV 843 (1189)
T ss_pred hhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHH
Confidence 34555444444433222222222457888899999999999999988876532 2345677777777776443
Q ss_pred H
Q 026145 220 S 220 (243)
Q Consensus 220 ~ 220 (243)
.
T Consensus 844 l 844 (1189)
T KOG2041|consen 844 L 844 (1189)
T ss_pred H
Confidence 3
No 401
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=84.97 E-value=27 Score=30.98 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=86.3
Q ss_pred ecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC-CCchHHHHHhHHHHHHHc
Q 026145 99 HCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKP-FGGIHVLYKDRCLARLTM 177 (243)
Q Consensus 99 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~la~~~~~~ 177 (243)
..|+++.+.-.+++.+---. .....|...+......|+.+-|-..+..+.++.- ..+ .....-+..--..
T Consensus 309 ~~g~~~~~~~l~ercli~cA-------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~--~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCA-------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTP--IIHLLEARFEESN 379 (577)
T ss_pred hcccHHHHHHHHHHHHhHHh-------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCc--HHHHHHHHHHHhh
Confidence 34567777777776654333 6677788888888888999999988888887753 333 4555556666778
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Q 026145 178 GNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAE 218 (243)
Q Consensus 178 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 218 (243)
|++..|...+++....-|+...+-..........|+.+.+.
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 99999999999999888999888888888889999888887
No 402
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=10 Score=30.41 Aligned_cols=128 Identities=8% Similarity=-0.051 Sum_probs=88.9
Q ss_pred HhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH------
Q 026145 103 PARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFE--KANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR------ 174 (243)
Q Consensus 103 ~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~------ 174 (243)
.++-.+.++.++...| ..-..|..+-..+-. ..++..-+...++.++.++.|- ..|..+-.+.
T Consensus 90 ldneld~~~~~lk~~P-------K~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy--H~W~YR~~vl~~ie~~ 160 (328)
T COG5536 90 LDNELDFLDEALKDNP-------KNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY--HVWSYRRWVLRTIEDL 160 (328)
T ss_pred hhcHHHHHHHHHhcCC-------chhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc--ceeeeEeeeeecchhh
Confidence 3445566777787787 667777666555544 3678888888999999999875 5555444333
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH---HHHHcCC------HHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 175 LTMGNFSAALEDVREALELAPNYTEAYICQGD---VFLAMDQ------YDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 175 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~---~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
+.-..+..-+++-..++..++.+..+|...-. ..+..|+ +++-+++.-.++-.+|++..+|.+.+
T Consensus 161 ~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r 234 (328)
T COG5536 161 FNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLR 234 (328)
T ss_pred ccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHH
Confidence 33334555577778888999999888877632 2233343 56667788888889999999987764
No 403
>PF12854 PPR_1: PPR repeat
Probab=84.08 E-value=3.2 Score=21.34 Aligned_cols=25 Identities=24% Similarity=0.200 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVRE 189 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~ 189 (243)
..|..+-..+.+.|+.++|.+.+++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 4677777778888888888877764
No 404
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=83.94 E-value=1.7 Score=27.27 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=22.0
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALE-------LAPNYTEAY 201 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~ 201 (243)
..+..+|.-+=+.|++++|+.+|+++++ ..|+++...
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~ 50 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL 50 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3455556666667777766666665553 456665433
No 405
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.88 E-value=18 Score=31.77 Aligned_cols=67 Identities=9% Similarity=0.025 Sum_probs=52.5
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCCCc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALEL---APN----YTEAYICQGDVFLAMDQ-YDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~----~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~ 231 (243)
--+..+|.++..+|+...|...|..+++. ... -|.+++.+|..+..+|. ..++..++.+|-....++
T Consensus 450 lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 450 LKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 34566799999999999999999877732 111 26789999999999988 999999999998776554
No 406
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.64 E-value=3.5 Score=25.21 Aligned_cols=30 Identities=37% Similarity=0.407 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
+..+...|...-..|++++|+.+|.++++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445556666777778888888888777653
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=83.53 E-value=5 Score=30.18 Aligned_cols=51 Identities=18% Similarity=0.174 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145 143 NFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPN 196 (243)
Q Consensus 143 ~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 196 (243)
..+..++..++.+...|+. .++.+++.++..+|+.++|....+++..+.|.
T Consensus 126 ~l~~~~~~a~~~l~~~P~~---~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDP---NVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3455566777888888864 78999999999999999999999999999993
No 408
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=83.31 E-value=6.4 Score=33.43 Aligned_cols=60 Identities=13% Similarity=-0.086 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
.-.+..+|.+.++.+-|+..-.+.|.++|.+. .-+...|.|+..+.+|.+|...+.-+.-
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~f--rnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYF--RNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchh--hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677889999999999999999999999976 6677789999999999999887766553
No 409
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=83.30 E-value=3.2 Score=26.12 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
.+..+...|..+-+.|+|++|+.+|.++++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666777777788888888888887754
No 410
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.20 E-value=11 Score=32.96 Aligned_cols=85 Identities=15% Similarity=0.003 Sum_probs=60.5
Q ss_pred hHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHH
Q 026145 104 ARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAA 183 (243)
Q Consensus 104 ~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A 183 (243)
+...+.+.......| ..+.-.+..+..+...|+.+.|+..++..+...-.....-.++.+|.++.-+.+|..|
T Consensus 250 ~~~~~~Ll~~~~~~p-------~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~a 322 (546)
T KOG3783|consen 250 EECEKALKKYRKRYP-------KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRA 322 (546)
T ss_pred HHHHHHhHHHHHhCC-------CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555 5566666777778888888888999998887221111235678899999999999999
Q ss_pred HHHHHHHHHhCC
Q 026145 184 LEDVREALELAP 195 (243)
Q Consensus 184 ~~~~~~al~~~p 195 (243)
...+......+.
T Consensus 323 ad~~~~L~desd 334 (546)
T KOG3783|consen 323 ADSFDLLRDESD 334 (546)
T ss_pred hhHHHHHHhhhh
Confidence 999999887664
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=83.09 E-value=18 Score=27.29 Aligned_cols=113 Identities=14% Similarity=0.042 Sum_probs=75.6
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHH-----HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEF-----EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~ 176 (243)
+++.|.++|..--..+ ..+...+..|..++ ..++...|++.|..+-..+ .+ .+..++|.++..
T Consensus 50 nF~~A~kv~K~nCden--------~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n--~~--~aC~~~gLl~~~ 117 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDEN--------SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN--IP--QACRYLGLLHWN 117 (248)
T ss_pred HHHHHHHHHHhccccc--------CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC--CH--HHHhhhhhhhcc
Confidence 7788888887655444 34445556665544 3568999999999988744 22 677778877753
Q ss_pred c-----C--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc------------------------CCHHHHHHHHHHHh
Q 026145 177 M-----G--NFSAALEDVREALELAPNYTEAYICQGDVFLAM------------------------DQYDAAEKSYSTCL 225 (243)
Q Consensus 177 ~-----~--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~al 225 (243)
- + +.+.|++++.++-.++ +..+-+.|...|..- .+.+.|.++--+|-
T Consensus 118 g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kAC 195 (248)
T KOG4014|consen 118 GEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKAC 195 (248)
T ss_pred CcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHH
Confidence 2 2 3678999999987654 455666666665543 45667777766666
Q ss_pred ccC
Q 026145 226 QID 228 (243)
Q Consensus 226 ~~~ 228 (243)
+++
T Consensus 196 el~ 198 (248)
T KOG4014|consen 196 ELD 198 (248)
T ss_pred hcC
Confidence 654
No 412
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.82 E-value=19 Score=26.87 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=76.9
Q ss_pred CCeEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHH
Q 026145 93 DGVVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCL 172 (243)
Q Consensus 93 ~g~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~ 172 (243)
.+......|+...|+..|+..-...+.|. ...-.+....+..++..|.|++-....+.. ..+.+.....+.-.+|.
T Consensus 100 ~at~~a~kgdta~AV~aFdeia~dt~~P~---~~rd~ARlraa~lLvD~gsy~dV~srvepL-a~d~n~mR~sArEALgl 175 (221)
T COG4649 100 AATLLAQKGDTAAAVAAFDEIAADTSIPQ---IGRDLARLRAAYLLVDNGSYDDVSSRVEPL-AGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHhhcccHHHHHHHHHHHhccCCCcc---hhhHHHHHHHHHHHhccccHHHHHHHhhhc-cCCCChhHHHHHHHHhH
Confidence 34555667799999999998765543111 111234556678889999999887666543 22222113467788999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 026145 173 ARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 173 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 209 (243)
.-++.|++..|...|.+... +...+....+++.+..
T Consensus 176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 99999999999999998765 5556666666666544
No 413
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.55 E-value=26 Score=31.35 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR 188 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 188 (243)
+..++..|..+..-+..++|-++|++.+..+|++ .++..+.-+.+.|-...|...++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 42 SLAMLKKAEFLHDVNETERAYALYETLIAQNNDE----ARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcc----hHHHHHHHHHhhhhhhHHHHHHH
Confidence 3344444555555555555555555555555552 34444555555555555544444
No 414
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=81.44 E-value=22 Score=31.75 Aligned_cols=82 Identities=6% Similarity=-0.004 Sum_probs=66.1
Q ss_pred HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q 026145 137 AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDA 216 (243)
Q Consensus 137 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 216 (243)
++.+....+.+....+.-+....... ...+..+..+-..+..++|-..|++.+..+|+ .+++..+.-+.+.|-...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 92 (578)
T PRK15490 17 TLKQEKKLAQAVALIDSELPTEALTS--LAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKD 92 (578)
T ss_pred HHHHHhhHHHHHHHHHHhCCccchhH--HHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhH
Confidence 34456677888888777665555433 66777788888999999999999999999998 678888999999998888
Q ss_pred HHHHHH
Q 026145 217 AEKSYS 222 (243)
Q Consensus 217 A~~~~~ 222 (243)
|...++
T Consensus 93 ~~~~~~ 98 (578)
T PRK15490 93 AQLILK 98 (578)
T ss_pred HHHHHH
Confidence 888777
No 415
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=81.30 E-value=11 Score=34.62 Aligned_cols=113 Identities=13% Similarity=0.061 Sum_probs=63.6
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
..|...|+++.|.++|.++-. ....-.-|.+.|+|.+|..+-.+... |+. ....|...+.-+
T Consensus 773 dhyan~~dfe~ae~lf~e~~~---------------~~dai~my~k~~kw~da~kla~e~~~--~e~-t~~~yiakaedl 834 (1636)
T KOG3616|consen 773 DHYANKGDFEIAEELFTEADL---------------FKDAIDMYGKAGKWEDAFKLAEECHG--PEA-TISLYIAKAEDL 834 (1636)
T ss_pred HHhccchhHHHHHHHHHhcch---------------hHHHHHHHhccccHHHHHHHHHHhcC--chh-HHHHHHHhHHhH
Confidence 456677788888877765321 11122334556777777666655543 332 224455555555
Q ss_pred HHcCCHHHHHHHHH------HHHHh-----------------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 175 LTMGNFSAALEDVR------EALEL-----------------APNY-TEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 175 ~~~~~~~~A~~~~~------~al~~-----------------~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
-..|+|.+|.+.|- +++.+ .|+. .+.+..+|.-|...|+..+|...|.++-
T Consensus 835 dehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 835 DEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred HhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 55555555444331 12211 2222 3567778888888888888888776654
No 416
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=81.29 E-value=4.2 Score=25.64 Aligned_cols=31 Identities=29% Similarity=0.248 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
.+..+...|...-..|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555666666777777777777766643
No 417
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=80.48 E-value=2.7 Score=32.64 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=57.1
Q ss_pred HHHhcCHHHHHHHHHHhhccC---CCCc-------hHHHHHhHHHHHHHcCCH-HHH-HHHHHHHHHh--CCCcH--HHH
Q 026145 138 EFEKANFSEADGFLSQAIELK---PFGG-------IHVLYKDRCLARLTMGNF-SAA-LEDVREALEL--APNYT--EAY 201 (243)
Q Consensus 138 ~~~~~~~~~A~~~~~~al~~~---p~~~-------~~~~~~~la~~~~~~~~~-~~A-~~~~~~al~~--~p~~~--~~~ 201 (243)
++..|+|+.|+++...||+.+ |+.- +++-....+......|+. +.. ...+.....- -|+.. ..+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~ 172 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY 172 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence 457899999999999999875 3321 123344455555666652 111 2222222111 13333 345
Q ss_pred HHHHHHHH---------HcCCHHHHHHHHHHHhccCCCc
Q 026145 202 ICQGDVFL---------AMDQYDAAEKSYSTCLQIDPSI 231 (243)
Q Consensus 202 ~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 231 (243)
-..|..+. ..++...|..++++|+.++|+.
T Consensus 173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 55566663 4567889999999999999864
No 418
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=78.80 E-value=4.8 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=15.7
Q ss_pred hHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 026145 169 DRCLARLTMGNFSAALEDVREALELAPN 196 (243)
Q Consensus 169 ~la~~~~~~~~~~~A~~~~~~al~~~p~ 196 (243)
.+|..+...|++++|...|-+|+...|.
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 3455555556666666666666665554
No 419
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=78.21 E-value=35 Score=29.24 Aligned_cols=99 Identities=11% Similarity=0.010 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCC--------------HHHHHHHHHHH
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGN--------------FSAALEDVREA 190 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~--------------~~~A~~~~~~a 190 (243)
.....+|...+..++|+.|...|+.+.+-..++. .+.++--.|.+++..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 3466789999999999999999999887655442 12333344555555552 23334444442
Q ss_pred ----HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 191 ----LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 191 ----l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.........+.+..+.++...+.+.+|...+-+....
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 1111123456777788888999988887777776655
No 420
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.07 E-value=4.6 Score=19.56 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=8.8
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 026145 170 RCLARLTMGNFSAALEDVRE 189 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~ 189 (243)
+-..+.+.|++++|.+.+++
T Consensus 6 li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 6 LISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHHHccchHHHHHHHHHH
Confidence 33444444444444444443
No 421
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.96 E-value=22 Score=28.56 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=67.9
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccC-----CCCchHHHHHhHHHHHHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELK-----PFGGIHVLYKDRCLARLT 176 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~la~~~~~ 176 (243)
+++.|+.-|++.+...++..+ ---.++.+.-.+.++.++|++-.+.|.+.+..- .+.+ ....+++-..-..
T Consensus 42 ~p~~Al~sF~kVlelEgEKge---WGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS-EKsIN~IlDyiSt 117 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGE---WGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS-EKSINSILDYIST 117 (440)
T ss_pred CHHHHHHHHHHHHhcccccch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhh
Confidence 899999999999877753222 233467777888899999999998888876431 1111 0111111111111
Q ss_pred cCCHHHHHHHHHH---HHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 177 MGNFSAALEDVRE---ALEL---APNYTEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 177 ~~~~~~A~~~~~~---al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
.++.+---+.|+. |++- ..-+...-..+|.+|+..+.|..-...+.+.-
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 2222222233333 2221 12233344578999999888887666665543
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=77.10 E-value=21 Score=29.57 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=67.4
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFS 181 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~ 181 (243)
++.....+|+.+....|+ +-.-.+.+....+..-...++...+-.....--+.+.-++..+|..+.++|+.+
T Consensus 311 DW~~I~aLYdaL~~~apS--------PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~ 382 (415)
T COG4941 311 DWPAIDALYDALEQAAPS--------PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVE 382 (415)
T ss_pred ChHHHHHHHHHHHHhCCC--------CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChH
Confidence 777777777777666641 223345666666666677777777766554211112356777899999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHH
Q 026145 182 AALEDVREALELAPNYTEAYICQG 205 (243)
Q Consensus 182 ~A~~~~~~al~~~p~~~~~~~~la 205 (243)
+|-..|++++.+.++..+..+.+.
T Consensus 383 eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 383 EARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999998877655544
No 423
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=76.87 E-value=35 Score=27.49 Aligned_cols=105 Identities=13% Similarity=0.127 Sum_probs=64.8
Q ss_pred HHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHH---HHHcCCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 026145 136 EAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLA---RLTMGNF----SAALEDVREALELAPNYTEAYICQGDVF 208 (243)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~---~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~la~~~ 208 (243)
..+...++|++-.+.+.+......++...+..+..+.. .+.+... ....+.++.-++..|++..+++.+|..+
T Consensus 8 r~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~~ 87 (277)
T PF13226_consen 8 RELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMYW 87 (277)
T ss_pred HHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 45667888988888888877543321100111111111 1222211 2356666777788999988888888776
Q ss_pred HHcC----------------------CHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 209 LAMD----------------------QYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 209 ~~~g----------------------~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
.... -.+.|...+.+++.++|....+...+-+
T Consensus 88 ~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 88 VHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 6321 2467889999999999998777655443
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=76.21 E-value=47 Score=28.11 Aligned_cols=63 Identities=22% Similarity=0.251 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH--HHcCCHHHHHHHHHHHHH
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR--LTMGNFSAALEDVREALE 192 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~al~ 192 (243)
.....+..++..++|..|...+......-|.+.....+..++..| ...-++.+|.+.+++.+.
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 455677788999999999999999988633322123455554444 566688999999987664
No 425
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=75.99 E-value=35 Score=26.60 Aligned_cols=102 Identities=18% Similarity=0.009 Sum_probs=62.3
Q ss_pred eEEEecCCHhHHHHHHHHHhcCCCCCcchh------hHHHHHHHHHHHHHHHhcCHHH-H-HHHHHHhhc-c-CCCCchH
Q 026145 95 VVVGHCGTPARASEILMVLCGIKSDHDAAK------NLEALALRKRAEAEFEKANFSE-A-DGFLSQAIE-L-KPFGGIH 164 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~~-A-~~~~~~al~-~-~p~~~~~ 164 (243)
.|....|+++.|.++.+.++..+- +.... .-.+......+......|..-+ + ...+..... . -|+...+
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l-~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGL-TMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCC-CCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 588999999999999999986653 22221 1233334445555556665211 1 222222221 1 1332234
Q ss_pred HHHHhHHHHHH---------HcCCHHHHHHHHHHHHHhCCCc
Q 026145 165 VLYKDRCLARL---------TMGNFSAALEDVREALELAPNY 197 (243)
Q Consensus 165 ~~~~~la~~~~---------~~~~~~~A~~~~~~al~~~p~~ 197 (243)
..|-..|..++ ..++...|+.++++|+.++|+-
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 56666777774 4567889999999999999864
No 426
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=75.70 E-value=38 Score=28.34 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026145 177 MGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYST 223 (243)
Q Consensus 177 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 223 (243)
....-+|+..++.++..+|.+......+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 33466889999999999999999999999999999999999988865
No 427
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=75.56 E-value=7 Score=24.53 Aligned_cols=28 Identities=39% Similarity=0.326 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
.+...|..--..|+|++|+.+|..+++.
T Consensus 8 ~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 8 FLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 3444444455667888888888887764
No 428
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=74.31 E-value=8.7 Score=23.96 Aligned_cols=30 Identities=33% Similarity=0.392 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
+..+...|...-..|+|++|+.+|.++++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555666666777777777777777643
No 429
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.20 E-value=14 Score=29.65 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=41.0
Q ss_pred HhcCHHHHHHHHHHhhccCCCCch--HHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGI--HVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
+..++++|+..|++++++.++-+- ..++-.+-.+++++++|++-++.|.+.+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 455899999999999999887541 13445556778899999999999988875
No 430
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.56 E-value=68 Score=28.71 Aligned_cols=92 Identities=15% Similarity=0.185 Sum_probs=59.3
Q ss_pred HHHHHhcCHHHHHHHHHHhhccCCC-CchHHHHHhHHHHHHHcCCHHHHHHHHHHH-----HHhCCCcHHHHHHHHHHHH
Q 026145 136 EAEFEKANFSEADGFLSQAIELKPF-GGIHVLYKDRCLARLTMGNFSAALEDVREA-----LELAPNYTEAYICQGDVFL 209 (243)
Q Consensus 136 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-----l~~~p~~~~~~~~la~~~~ 209 (243)
..+.+.|-+..|.++++-.+.++|. +++ .+.+.+=...++..+|+=-++.++.. +.+-|+.+. -..+|..|.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl-~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l 427 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPL-GILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFL 427 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCch-hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHH
Confidence 3445689999999999999999998 651 22222333335566666666666554 333454432 223444444
Q ss_pred HcCC---HHHHHHHHHHHhccCC
Q 026145 210 AMDQ---YDAAEKSYSTCLQIDP 229 (243)
Q Consensus 210 ~~g~---~~~A~~~~~~al~~~p 229 (243)
.... .+.|...+.+|+...|
T Consensus 428 ~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 428 RKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCChhhHHHHHHHHHHHHHhCc
Confidence 4444 6779999999999988
No 431
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=73.24 E-value=62 Score=28.15 Aligned_cols=118 Identities=8% Similarity=-0.006 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHH
Q 026145 109 ILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVR 188 (243)
Q Consensus 109 ~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 188 (243)
.++.-++.+| .+...|+.+-..+..++.+++-.+.|++...-.|--+ .+|...-.--+..++|......|-
T Consensus 30 rLRerIkdNP-------tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~--~aw~ly~s~ELA~~df~svE~lf~ 100 (660)
T COG5107 30 RLRERIKDNP-------TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIME--HAWRLYMSGELARKDFRSVESLFG 100 (660)
T ss_pred HHHHHhhcCc-------hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCcccc--HHHHHHhcchhhhhhHHHHHHHHH
Confidence 4556677787 8999999999999999999999999999988887644 677655555556688999888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHhccCCCchhhhh
Q 026145 189 EALELAPNYTEAYICQGDVFLAMD---------QYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 189 ~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
++|...- +.+.|...-.--.+.+ ..-+|.++.-.++-.+|.....|.
T Consensus 101 rCL~k~l-~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ 156 (660)
T COG5107 101 RCLKKSL-NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWD 156 (660)
T ss_pred HHHhhhc-cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHH
Confidence 8886432 2333332222112211 233455555555556676665554
No 432
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.21 E-value=9.9 Score=23.81 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
+..+...|...-..|+|++|+.+|..+++.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 334445555555667777777777666643
No 433
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=72.58 E-value=10 Score=19.10 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=6.3
Q ss_pred CHHHHHHHHHHHh
Q 026145 213 QYDAAEKSYSTCL 225 (243)
Q Consensus 213 ~~~~A~~~~~~al 225 (243)
+.++|..+++++.
T Consensus 20 d~~~A~~~~~~Aa 32 (36)
T smart00671 20 DLEKALEYYKKAA 32 (36)
T ss_pred CHHHHHHHHHHHH
Confidence 4445555555443
No 434
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=72.49 E-value=11 Score=23.56 Aligned_cols=29 Identities=31% Similarity=0.293 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIE 156 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 156 (243)
+..+...|...-..|++++|+.+|.++++
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444555555666777777777766654
No 435
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=72.11 E-value=10 Score=18.65 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=12.2
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 168 KDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al 191 (243)
..+-..+.+.|++++|.+.|++..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444555555555555555443
No 436
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=71.26 E-value=12 Score=19.25 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhc
Q 026145 214 YDAAEKSYSTCLQ 226 (243)
Q Consensus 214 ~~~A~~~~~~al~ 226 (243)
.++|..+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4555555555543
No 437
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=71.03 E-value=57 Score=28.82 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=58.3
Q ss_pred hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 026145 141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKS 220 (243)
Q Consensus 141 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 220 (243)
.-.++--...+.+.+....+- .++..++.+|... ..++-...+++.++.+=++...-..++..|.+ ++-+.+..+
T Consensus 79 n~k~~~veh~c~~~l~~~e~k---mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~ 153 (711)
T COG1747 79 NHKNQIVEHLCTRVLEYGESK---MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHH
Confidence 334444445567777665443 6888899999887 56667788888888887777777778877777 677778888
Q ss_pred HHHHhc
Q 026145 221 YSTCLQ 226 (243)
Q Consensus 221 ~~~al~ 226 (243)
|.+++.
T Consensus 154 f~Ka~y 159 (711)
T COG1747 154 FGKALY 159 (711)
T ss_pred HHHHHH
Confidence 888764
No 438
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.39 E-value=36 Score=24.23 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=42.2
Q ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh
Q 026145 130 ALRKRAE-AEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL 193 (243)
Q Consensus 130 ~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 193 (243)
-+..+|. .+..+|+-++--+.+.........++ ..+..+|.+|.+.|+..+|-+.+.+|-+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p--~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKNEEINP--EFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-H--HHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCH--HHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3455554 44567777777777777775444444 89999999999999999999999998764
No 439
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=70.04 E-value=12 Score=22.69 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=7.5
Q ss_pred HHHcCCHHHHHHHHHHH
Q 026145 208 FLAMDQYDAAEKSYSTC 224 (243)
Q Consensus 208 ~~~~g~~~~A~~~~~~a 224 (243)
.-..|++++|+..|.++
T Consensus 15 ~D~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEA 31 (69)
T ss_dssp HHHTTSHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33444444444444443
No 440
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=69.93 E-value=10 Score=26.95 Aligned_cols=36 Identities=36% Similarity=0.577 Sum_probs=25.7
Q ss_pred CcEEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCC
Q 026145 40 LKELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGC 78 (243)
Q Consensus 40 ~~~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc 78 (243)
.+.+|||++..|++.=+..++..+-. ..+.+...|-
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~---~~~~v~SAGt 38 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAP---DNVEVDSAGT 38 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhcc---CCeEEECCcc
Confidence 46799999999999955555555444 4577776664
No 441
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.74 E-value=87 Score=28.34 Aligned_cols=27 Identities=26% Similarity=0.191 Sum_probs=14.3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
.-|..+|.+.+..+++..|.+++.++.
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345555555555555555555555543
No 442
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=69.62 E-value=54 Score=28.16 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC----Cc--hHHHH--------HhHHHHH-HHcCC-----HHHHHHHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELKPF----GG--IHVLY--------KDRCLAR-LTMGN-----FSAALEDV 187 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~--~~~~~--------~~la~~~-~~~~~-----~~~A~~~~ 187 (243)
.......|..++..|++.+|+..|..+|..-|- +. ..++. +-+|+.. ...+. .++..+.+
T Consensus 204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~l 283 (422)
T PF06957_consen 204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNL 283 (422)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 334566788899999999999999999865321 10 11111 1112111 11111 11221222
Q ss_pred HHHH-----HhCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHhccCCCchhhhh
Q 026145 188 REAL-----ELAPNYTEAYICQGD-VFLAMDQYDAAEKSYSTCLQIDPSIRRSKS 236 (243)
Q Consensus 188 ~~al-----~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 236 (243)
+-+. ++.|.+...-++.|. ..++.++|..|-.+-++.|++.|....+..
T Consensus 284 ELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q 338 (422)
T PF06957_consen 284 ELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ 338 (422)
T ss_dssp HHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence 2211 223444333334443 346889999999999999999998765543
No 443
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=69.60 E-value=1.5 Score=38.79 Aligned_cols=101 Identities=18% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhh--ccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHH--HHhCCC-cHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAI--ELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREA--LELAPN-YTEA 200 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a--l~~~p~-~~~~ 200 (243)
.....+...+..+...|++..|...+.+.- .+.|.. ........+.+....|++++|+..+... ..+.+. ....
T Consensus 22 ~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q-~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 22 QRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQ-QARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHH-HHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 445566777889999999999999998765 334433 2355666788899999999999999741 111121 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 201 YICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 201 ~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
+..++.++...|++-+|...+-..-.+
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l~~l 127 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIALDPL 127 (536)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 666789999999988887765554443
No 444
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=69.44 E-value=34 Score=33.37 Aligned_cols=133 Identities=20% Similarity=0.127 Sum_probs=92.9
Q ss_pred eEEEecCCHhHHHHHHHHHhcCC-CCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc-----CCCCc-hHHHH
Q 026145 95 VVVGHCGTPARASEILMVLCGIK-SDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQAIEL-----KPFGG-IHVLY 167 (243)
Q Consensus 95 ~~~~~~~~~~~a~~~l~~~l~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~-~~~~~ 167 (243)
..+...++.++|+..-.++.... +-...++......+.+++...+..++...|+..+.++..+ .|+++ .+...
T Consensus 981 ~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~ 1060 (1236)
T KOG1839|consen 981 KLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSF 1060 (1236)
T ss_pred HHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhh
Confidence 34455567777776655443111 1123334578888888998888888999999998888765 23222 33666
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 168 KDRCLARLTMGNFSAALEDVREALELAP--------NYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.+++.++...++++.|+++.+.|++.+. .....+..++......+++..|....+....+
T Consensus 1061 ~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1061 INLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 8889999999999999999999998652 12446777788888888888877776665544
No 445
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=68.69 E-value=14 Score=22.86 Aligned_cols=27 Identities=33% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 026145 130 ALRKRAEAEFEKANFSEADGFLSQAIE 156 (243)
Q Consensus 130 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 156 (243)
.+...|...-..|++++|+.+|..+++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555666777777777777664
No 446
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.55 E-value=68 Score=26.69 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHH---
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYTEAYICQGD--- 206 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~--- 206 (243)
-..+|.+..+.|+..+|++.+....+-.|-..+-...-|+-..++.++-|.+.-..+-+-=.+ -|.++...+.-+.
T Consensus 278 KRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~ 357 (556)
T KOG3807|consen 278 KRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKT 357 (556)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHH
Confidence 346788888999999999999888877774333344556666666665555443333222221 1333322221111
Q ss_pred -H---------HHHcC---CHHHHHHHHHHHhccCCCchhhhhhhhh
Q 026145 207 -V---------FLAMD---QYDAAEKSYSTCLQIDPSIRRSKSFKVS 240 (243)
Q Consensus 207 -~---------~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~~a~ 240 (243)
+ -.+.| --..|++.+.++++.+|.-|......+.
T Consensus 358 RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ks 404 (556)
T KOG3807|consen 358 RAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEMKS 404 (556)
T ss_pred HHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHHHh
Confidence 0 11122 1235788999999999988766544443
No 447
>PF13041 PPR_2: PPR repeat family
Probab=68.43 E-value=18 Score=20.07 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=14.5
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 444455555555555555555555544
No 448
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.29 E-value=33 Score=23.04 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQ 213 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 213 (243)
.....|..-+..||++.|.+...++-+..+..+-.+..-+.+-..+||
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 344567777777888888888877766544444444444555544443
No 449
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.20 E-value=44 Score=31.16 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 125 NLEALALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 125 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
..........|..++.+|++++|...|-+.+..
T Consensus 365 d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 365 DTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 355666777788889999999999999888764
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=68.05 E-value=49 Score=24.89 Aligned_cols=69 Identities=14% Similarity=0.052 Sum_probs=42.3
Q ss_pred CHhHHHHHHHHHhcCCCCCcchhhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHH
Q 026145 102 TPARASEILMVLCGIKSDHDAAKNLEAL--ALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLAR 174 (243)
Q Consensus 102 ~~~~a~~~l~~~l~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~ 174 (243)
-.+.|+.+++..-...+ ....-..... .--....++++.|.+++|.+.+++... +|++. .....+..+-
T Consensus 84 PLESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~--~~r~kL~~II 154 (200)
T cd00280 84 PLESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQ--KLRMKLLMII 154 (200)
T ss_pred hHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCch--hHHHHHHHHH
Confidence 56788888877665443 1111111111 122334578899999999999999998 77754 4444444443
No 451
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=68.05 E-value=34 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.157 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCC
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGN 179 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~ 179 (243)
..+......|...+-.||+..|.+...++-+..+... -.|..-+.+-..+||
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~--l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPL--LNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHcCC
Confidence 4555666778888899999999999999977655533 444444555445443
No 452
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.68 E-value=39 Score=29.10 Aligned_cols=99 Identities=23% Similarity=0.157 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCC----------CCchHHHHHhHHHHHHHcCCH---HHHHHHHHHH---
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKP----------FGGIHVLYKDRCLARLTMGNF---SAALEDVREA--- 190 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------~~~~~~~~~~la~~~~~~~~~---~~A~~~~~~a--- 190 (243)
.+..++..|..+++...|++|+..+-.|=+... +| ++.....+-+||+.+++. ++|..-+..+
T Consensus 162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN-yallnLDIVWCYfrLknitcL~DAe~RL~ra~kg 240 (568)
T KOG2561|consen 162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN-YALLNLDIVWCYFRLKNITCLPDAEVRLVRARKG 240 (568)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc-hhhhhcchhheehhhcccccCChHHHHHHHHHHh
Confidence 344567788899999999999988766643321 12 224445567788877753 3333322222
Q ss_pred HHh-------------CCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 191 LEL-------------APNYT------EAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 191 l~~-------------~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
+.. .|..+ ..+..-|++.+.+|+-++|.+.++.+..
T Consensus 241 f~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 241 FERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 211 12222 2455669999999999999999998764
No 453
>PF13041 PPR_2: PPR repeat family
Probab=67.08 E-value=20 Score=19.94 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhhccC
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAIELK 158 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 158 (243)
...|..+-..+.+.|++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3456777788999999999999999988764
No 454
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.94 E-value=14 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=12.2
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 168 KDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al 191 (243)
...|.-.=..|+|++|+.+|..++
T Consensus 10 a~~Ave~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 10 ARLAVQRDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHH
Confidence 334444445555555555555554
No 455
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=66.76 E-value=16 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.284 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhcc
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIEL 157 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 157 (243)
..+...|...-..|+|++|..+|..+++.
T Consensus 7 ~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 7 AELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444455555556777777766666543
No 456
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=66.24 E-value=14 Score=23.46 Aligned_cols=28 Identities=11% Similarity=-0.006 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhhc
Q 026145 129 LALRKRAEAEFEKANFSEADGFLSQAIE 156 (243)
Q Consensus 129 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 156 (243)
......|..+-..|+.++|+.+|++++.
T Consensus 9 ~~~I~kaL~~dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 9 FEEISKALRADEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 3344444455555666666666666654
No 457
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.67 E-value=77 Score=26.26 Aligned_cols=102 Identities=14% Similarity=0.109 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc----hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG----IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTE-- 199 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 199 (243)
....++..+|..|.+-|+-+.|++.+.+..+..-.-+ +--....+|..|....-..+.++-.+..++..-++..
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN 181 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 5677899999999999999999999877765432211 1123345677777766677777777777776544321
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 200 -AYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 200 -~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.....|.-.....++.+|-..|...+.-
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 2222344555677888888888777654
No 458
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.63 E-value=14 Score=26.05 Aligned_cols=36 Identities=8% Similarity=0.070 Sum_probs=19.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 203 CQGDVFLAMDQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 203 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
.+|..|...|+++++..++-.|+.+.|.-.++...+
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 355555555555555555555555555555444433
No 459
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.41 E-value=74 Score=25.96 Aligned_cols=103 Identities=14% Similarity=0.032 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc--h--HHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG--I--HVLYKDRCLARLTMGNFSAALEDVREALELAPNYTE-- 199 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-- 199 (243)
..++++.++|..|.+.++-+.+.++..+.++..-..+ + --.-..+|.+|..+.-.++.++..+..++..-++..
T Consensus 113 e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrN 192 (412)
T COG5187 113 EGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRN 192 (412)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhh
Confidence 5678999999999999999999999888776543221 1 122345677777777788888888888876654321
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 200 -AYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 200 -~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
.....|.-.....++.+|-..+...+.--
T Consensus 193 RyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 193 RYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 22234566667778889888887776543
No 460
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.78 E-value=71 Score=28.59 Aligned_cols=95 Identities=13% Similarity=0.037 Sum_probs=52.5
Q ss_pred hcCHHHHHHHHHHhhccCCCCch----------HHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-----CC----------
Q 026145 141 KANFSEADGFLSQAIELKPFGGI----------HVLYKDRCLARLTMGNFSAALEDVREALEL-----AP---------- 195 (243)
Q Consensus 141 ~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p---------- 195 (243)
...|++|...|.-++...+.+.. ...+..++.+...+|+.+-|....+++|-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45566776666666554332210 134555666666777776666665555521 12
Q ss_pred ------CcHH---HHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-chhhh
Q 026145 196 ------NYTE---AYICQGDVFLAMDQYDAAEKSYSTCLQIDPS-IRRSK 235 (243)
Q Consensus 196 ------~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 235 (243)
.+.. +.+..-.-+.+.|.+..|.++.+-.+.++|. +|-+.
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 1111 2222234445677777777777777777776 55443
No 461
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=64.62 E-value=15 Score=23.18 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=13.9
Q ss_pred HhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 168 KDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 168 ~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
...|.-.=..|+|++|+.+|.++|.
T Consensus 10 ~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 10 LKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344445556666666666665553
No 462
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=64.08 E-value=83 Score=26.06 Aligned_cols=82 Identities=21% Similarity=0.211 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHH--HHhhccCCCCchHHHHHhHHHHHHHcCCHHH
Q 026145 105 RASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFL--SQAIELKPFGGIHVLYKDRCLARLTMGNFSA 182 (243)
Q Consensus 105 ~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~--~~al~~~p~~~~~~~~~~la~~~~~~~~~~~ 182 (243)
.-.+.+.+..+..| .....++..|.-.+.-|+|..|-.++ -+++-.+|+.....+.++.-..-..+.+|+.
T Consensus 113 ~~l~~L~e~ynf~~-------e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~ 185 (432)
T KOG2758|consen 113 QNLQHLQEHYNFTP-------ERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDG 185 (432)
T ss_pred HHHHHHHHhcCCCH-------HHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHH
Confidence 33444555555555 78888999999999999999997763 3444444432112333333334456788999
Q ss_pred HHHHHHHHHHh
Q 026145 183 ALEDVREALEL 193 (243)
Q Consensus 183 A~~~~~~al~~ 193 (243)
|++.+.+.-+.
T Consensus 186 A~edL~rLre~ 196 (432)
T KOG2758|consen 186 ALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHH
Confidence 99998876653
No 463
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=63.89 E-value=1e+02 Score=26.95 Aligned_cols=50 Identities=8% Similarity=0.006 Sum_probs=22.5
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
..|++..|-..|+-.+...|+++ ..-...-..+...++-..|...|++++
T Consensus 444 ~~~d~~ta~~ifelGl~~f~d~~--~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 444 ATGDRATAYNIFELGLLKFPDST--LYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred hcCCcchHHHHHHHHHHhCCCch--HHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 34555555555555555555443 222222233344455555555555444
No 464
>PF02058 Guanylin: Guanylin precursor; InterPro: IPR000879 Guanylin, a 15-amino-acid peptide, is an endogenous ligand of the intestinal receptor guanylate cyclase-C, known as STaR [, ]. Upon receptor binding, guanylin increases the intracellular concentration of cGMP, it induces chloride secretion and decreases intestinal fluid absorption, ultimately causing diarrhoea []. The peptide stimulates the enzyme through the same receptor binding region as the heat-stable enterotoxins [].; GO: 0008047 enzyme activator activity; PDB: 1UYB_A 1UYA_A 1GNA_A 1O8R_A 1GNB_A.
Probab=63.40 E-value=4.6 Score=26.05 Aligned_cols=57 Identities=25% Similarity=0.529 Sum_probs=33.2
Q ss_pred CCCcccccccccccceeecCCCCcccccccccccccCCCcEEEEccCC--------ccCccCHHHHHHHHHhc
Q 026145 2 EGGFGLAFNSVLPVARLRLPSNDKSFCFPLPRARINAELKELRVCTNR--------TCRRQGSMQILETLSSL 66 (243)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vC~~~--------~c~~~G~~~~~~~l~~~ 66 (243)
.|+|-.++.|+.-|+.+.+.. ...-|+...+-...||.++ .|...++..++++|+..
T Consensus 7 ~g~fsf~LESVKkLkdL~~~~--------~~~prl~~~~~~~~vC~~P~lP~el~PvC~~~~A~~if~rL~~I 71 (89)
T PF02058_consen 7 DGGFSFPLESVKKLKDLEEQS--------MQSPRLQAQSLAPSVCSHPALPQELQPVCKSPEAASIFQRLRTI 71 (89)
T ss_dssp SSSSEE-SHHHHTTTT--S----------S-----SS-T---SS-SSTTS-GGGHHHHTSTTHHHHHHHHHHH
T ss_pred ECCEEEehHHHHhHHHHhhcc--------cCCCccccCCCCccccCCCCCchHhhhhcCCcCHHHHHHHHHHH
Confidence 578888888888776653322 1111222233357799988 89999999999999984
No 465
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=63.36 E-value=17 Score=17.88 Aligned_cols=25 Identities=28% Similarity=0.181 Sum_probs=13.8
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHH
Q 026145 167 YKDRCLARLTMGNFSAALEDVREAL 191 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al 191 (243)
|..+-.++.+.|+++.|...++.-.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555666666655555543
No 466
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.95 E-value=25 Score=20.97 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=20.5
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 191 LELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 191 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
++....+..-+...-.-|..+|++++|.+++.+...
T Consensus 16 lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 16 LRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333334444555555666677777777777666543
No 467
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=62.68 E-value=20 Score=18.38 Aligned_cols=16 Identities=19% Similarity=0.179 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhCC
Q 026145 180 FSAALEDVREALELAP 195 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p 195 (243)
++.|-..|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 4445555555555444
No 468
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=62.62 E-value=1.2e+02 Score=27.24 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHh---cCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 026145 126 LEALALRKRAEAEFEK---ANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYI 202 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 202 (243)
........+-+.++.. ..|.-|+-.+-...++.|.+...... .-|.+|+...++.. +..+...|.
T Consensus 255 e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~----------~l~~~AI~sa~~~Y--~n~HvYPYt 322 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPL----------ELFNEAISSARTYY--NNHHVYPYT 322 (618)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HH----------HHHHHHHHHHHHHC--TT--SHHHH
T ss_pred HHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHH----------HHHHHHHHHHHHHh--cCCccccce
Confidence 3444444455555554 46778887777777777654300110 01334444433332 234456677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 203 CQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 203 ~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
.+|-.|++.++|.+|+..+.++-.
T Consensus 323 y~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 323 YLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888877777643
No 469
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.82 E-value=32 Score=30.91 Aligned_cols=69 Identities=22% Similarity=0.217 Sum_probs=50.3
Q ss_pred HHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 148 DGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 148 ~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
..+.++||++.+++ .-.+ .+.+++|+++.|.+...++ ++..-|-.||.+....+++..|.+++.++-.+
T Consensus 627 ~g~~e~AL~~s~D~---d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 627 QGMKEQALELSTDP---DQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred ccchHhhhhcCCCh---hhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34455566666654 2334 3446789999988766544 45667999999999999999999999987654
No 470
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.51 E-value=48 Score=23.17 Aligned_cols=66 Identities=17% Similarity=0.075 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCC-----c-h-------HHHHHhHHHHHHHcCCHHHHHHHHHH----HHHh
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFG-----G-I-------HVLYKDRCLARLTMGNFSAALEDVRE----ALEL 193 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~-~-------~~~~~~la~~~~~~~~~~~A~~~~~~----al~~ 193 (243)
+..+|+..++.+++-.++-.|++|+.+..+- . . .....|+|..+..+|+.+=.+.+++- ++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888899999999999999998763221 0 0 12457899999999999888888864 4445
Q ss_pred CCC
Q 026145 194 APN 196 (243)
Q Consensus 194 ~p~ 196 (243)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 554
No 471
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=61.21 E-value=1.2e+02 Score=26.97 Aligned_cols=98 Identities=20% Similarity=0.121 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhh-ccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHH--HHH
Q 026145 128 ALALRKRAEAEFEKANFSEADGFLSQAI-ELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALEL-APNYTEA--YIC 203 (243)
Q Consensus 128 ~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~--~~~ 203 (243)
.......+.++++.++.++|...+.+.- .+.|.. ..+.-...+.+....+++..|...+.+...- -|.+-.+ |..
T Consensus 63 ~~~~llAa~al~~e~k~~qA~~Ll~ql~~~Ltd~Q-~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~ 141 (604)
T COG3107 63 NDWLLLAARALVEEGKTAQAQALLNQLPQELTDAQ-RAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQA 141 (604)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHhccccCCHHH-HHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHH
Confidence 3344455778899999999999999876 454443 2233445588888899999999999876532 2333334 444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhccCC
Q 026145 204 QGDVFLAMDQYDAAEKSYSTCLQIDP 229 (243)
Q Consensus 204 la~~~~~~g~~~~A~~~~~~al~~~p 229 (243)
++.+....|+ ++...+.-+..+|
T Consensus 142 ~a~a~ea~~~---~~~a~rari~~~~ 164 (604)
T COG3107 142 RADALEARGD---SIDAARARIAQDP 164 (604)
T ss_pred HHHHHhcccc---hHHHHHHHHHhhh
Confidence 4555555544 3333444444444
No 472
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=60.65 E-value=18 Score=26.05 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=25.0
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHhccCCCchhhhhhhh
Q 026145 203 CQGDVFLAMD-QYDAAEKSYSTCLQIDPSIRRSKSFKV 239 (243)
Q Consensus 203 ~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~~a 239 (243)
.+|..+...| +.++|...|-+|+...|+-.++...+.
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~LL~iyq 132 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQPQQLLSIYQ 132 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4677777777 777777777777777776665555444
No 473
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.21 E-value=23 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145 131 LRKRAEAEFEKANFSEADGFLSQAIELKPFGG 162 (243)
Q Consensus 131 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 162 (243)
...+|..+...|++++|...|-+|+...|+..
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 34678899999999999999999999999853
No 474
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=59.45 E-value=43 Score=30.45 Aligned_cols=53 Identities=11% Similarity=0.236 Sum_probs=35.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Q 026145 171 CLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQ 226 (243)
Q Consensus 171 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 226 (243)
-..+...++|.+|....++--+.- +..|+..|..+....+++||.+.|.+|-+
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 345566778888877765532222 34677777777788888888777776543
No 475
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=58.49 E-value=20 Score=30.24 Aligned_cols=44 Identities=20% Similarity=0.359 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC------------HHHHHHHHHHHh
Q 026145 180 FSAALEDVREALELAPNYTEAYICQGDVFLAMDQ------------YDAAEKSYSTCL 225 (243)
Q Consensus 180 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al 225 (243)
...|+.++++|.. .++|..|.++|.++..+|+ |.+|...+.+|=
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 4677888887765 5667888888888887774 456666666653
No 476
>PRK10126 tyrosine phosphatase; Provisional
Probab=58.20 E-value=15 Score=26.29 Aligned_cols=34 Identities=32% Similarity=0.623 Sum_probs=23.1
Q ss_pred cEEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCC
Q 026145 41 KELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGC 78 (243)
Q Consensus 41 ~~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc 78 (243)
+.+|||++..|++.=++.++..+- ..+.+...|.
T Consensus 4 ~iLFVC~gN~cRSpmAEa~~~~~~----~~~~v~SAG~ 37 (147)
T PRK10126 4 NILVVCVGNICRSPTAERLLQRYH----PELKVESAGL 37 (147)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc----CCeEEEeeec
Confidence 579999999999985555554332 2366666554
No 477
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.83 E-value=1.9e+02 Score=30.78 Aligned_cols=64 Identities=11% Similarity=0.046 Sum_probs=58.1
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..+.|...|.+-...|+++.|-...-.|.+.. -+.++...|..+...|+...|+..+++.+..+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999988766 57899999999999999999999999999654
No 478
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=56.88 E-value=11 Score=26.91 Aligned_cols=34 Identities=38% Similarity=0.558 Sum_probs=23.2
Q ss_pred cEEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCC
Q 026145 41 KELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGC 78 (243)
Q Consensus 41 ~~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc 78 (243)
+.++||++..|++.=++.++..+- ..+.+..+|-
T Consensus 4 ~ILfVC~gN~cRSpmAEa~~~~~~----~~~~v~SaG~ 37 (144)
T PRK11391 4 SILVVCTGNICRSPIGERLLRKRL----PGVKVKSAGV 37 (144)
T ss_pred eEEEEcCCcHhHHHHHHHHHHHhc----CCeEEEcccc
Confidence 579999999999986666655432 2356655553
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=56.48 E-value=23 Score=22.46 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHHHhC
Q 026145 179 NFSAALEDVREALELA 194 (243)
Q Consensus 179 ~~~~A~~~~~~al~~~ 194 (243)
.|+.|.+..+++|..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3566666666666544
No 480
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.26 E-value=2.1e+02 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=49.3
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 227 (243)
.+|..+|.+.++.+...+|++.|-++ +++..|...-.+-.+.|+|++-+.++.-+-+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 78999999999999999999999654 56677888888888999999999888877653
No 481
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=54.45 E-value=15 Score=25.48 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=24.1
Q ss_pred cEEEEccCCccCccCHHHHHHHHHhcCCCcEEEEeeCCC
Q 026145 41 KELRVCTNRTCRRQGSMQILETLSSLAPPEVAVKSCGCL 79 (243)
Q Consensus 41 ~~i~vC~~~~c~~~G~~~~~~~l~~~g~~~v~v~~~gc~ 79 (243)
+.++||++..|++.=++.++..+ +.+.+.+..+|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~---~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTL---GAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHh---cCCCEEEEcCcCC
Confidence 46899999999998566655443 2235666666633
No 482
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=53.54 E-value=1.4e+02 Score=25.35 Aligned_cols=56 Identities=18% Similarity=0.014 Sum_probs=33.0
Q ss_pred EecCCHhHHHHHHHHHhcCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 026145 98 GHCGTPARASEILMVLCGIKSDHDAAKNLEALALRKRAEAEFEKANFSEADGFLSQ 153 (243)
Q Consensus 98 ~~~~~~~~a~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 153 (243)
.+.+++..|.++|..+....+.+...+..........|..+...=++++|.+.+++
T Consensus 141 ~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 141 INAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34457788888888877554311111112222233344455667899999999986
No 483
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=52.80 E-value=1e+02 Score=26.09 Aligned_cols=62 Identities=16% Similarity=-0.023 Sum_probs=46.2
Q ss_pred HHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHH--HHHHHcCCHHHHHHHHHHHhcc
Q 026145 166 LYKDRCLARLTMGNFSAALEDVREALELAPNYTE--AYICQG--DVFLAMDQYDAAEKSYSTCLQI 227 (243)
Q Consensus 166 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~la--~~~~~~g~~~~A~~~~~~al~~ 227 (243)
-....+.-++..++|..|.+.++.....-|.+.. .+..+. --+...-++++|.+.+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3456678888999999999999998875343333 444444 4456788999999999988765
No 484
>PF15469 Sec5: Exocyst complex component Sec5
Probab=52.64 E-value=57 Score=24.21 Aligned_cols=27 Identities=7% Similarity=-0.060 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHhccCCCchhhhhhh
Q 026145 212 DQYDAAEKSYSTCLQIDPSIRRSKSFK 238 (243)
Q Consensus 212 g~~~~A~~~~~~al~~~p~~~~~~~~~ 238 (243)
...++........++++|+...+|.++
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 456667777777788888666566544
No 485
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=52.32 E-value=28 Score=24.96 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCcEEEEccCCccCccCHHHHHHHHHh-cCCC-cEEEEeeC
Q 026145 39 ELKELRVCTNRTCRRQGSMQILETLSS-LAPP-EVAVKSCG 77 (243)
Q Consensus 39 ~~~~i~vC~~~~c~~~G~~~~~~~l~~-~g~~-~v~v~~~g 77 (243)
....++||.|..|++.=++.|+..+.+ .|+. .+.|-..|
T Consensus 6 ~~svlFvclGNiCRSP~AEaVFr~~v~K~~l~~~~~iDSag 46 (159)
T KOG3217|consen 6 TKSVLFVCLGNICRSPIAEAVFRDLVKKRNLSEEWHIDSAG 46 (159)
T ss_pred ceEEEEEEecccccCHHHHHHHHHHHHHcCcceeeeecccc
Confidence 446799999999999989999887776 6775 55554444
No 486
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.89 E-value=70 Score=21.43 Aligned_cols=35 Identities=14% Similarity=0.022 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145 165 VLYKDRCLARLTMGNFSAALEDVREALELAPNYTE 199 (243)
Q Consensus 165 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 199 (243)
.++..+|..|...|+-+.|.+.|+.--.+.|.+..
T Consensus 73 G~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 73 GYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred cHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 56667788888888888888888777777777643
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.72 E-value=1.3e+02 Score=24.57 Aligned_cols=66 Identities=8% Similarity=-0.027 Sum_probs=40.4
Q ss_pred hHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---H---HHHHHHHHHHHcCCHHHHHHHHHHHhccC
Q 026145 163 IHVLYKDRCLARLTMGNFSAALEDVREALELAPNYT---E---AYICQGDVFLAMDQYDAAEKSYSTCLQID 228 (243)
Q Consensus 163 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 228 (243)
..+++.++|..|.+.++.+.+.++..+.++..-... + ....+|.+|..+.-.++.++.....++--
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 356777777777777777777777777776544331 2 23345555555555566666655555543
No 488
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=51.67 E-value=36 Score=21.05 Aligned_cols=14 Identities=7% Similarity=0.140 Sum_probs=5.9
Q ss_pred HHHHHHHHhccCCC
Q 026145 217 AEKSYSTCLQIDPS 230 (243)
Q Consensus 217 A~~~~~~al~~~p~ 230 (243)
|++.|.+++...|+
T Consensus 34 a~e~l~~~~~~~~~ 47 (77)
T smart00745 34 AIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHhccCCC
Confidence 33334444444443
No 489
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.59 E-value=46 Score=27.84 Aligned_cols=60 Identities=13% Similarity=-0.025 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCC----Cc--hHHHHHhHHHHHHHcCCHHHHHH
Q 026145 126 LEALALRKRAEAEFEKANFSEADGFLSQAIELKPF----GG--IHVLYKDRCLARLTMGNFSAALE 185 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~--~~~~~~~la~~~~~~~~~~~A~~ 185 (243)
....-+...|+-.+.+++++.|...|..|..+... .. ...+++.+|..++..++++.++-
T Consensus 39 ~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 39 KTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566778899999999999999999999876321 00 34788889999998888766543
No 490
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=51.42 E-value=84 Score=22.17 Aligned_cols=36 Identities=19% Similarity=0.065 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhhccCCCCc
Q 026145 127 EALALRKRAEAEFEKANFSEADGFLSQAIELKPFGG 162 (243)
Q Consensus 127 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 162 (243)
....++.+=..++.+-+.+.|...|.+.++.+|++.
T Consensus 75 Y~EaLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HL 110 (139)
T PF12583_consen 75 YSEALRDFQCSWIAKLEPENAEQVYEELLEAHPDHL 110 (139)
T ss_dssp HHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-T
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchH
Confidence 333444444444445555566666666666666654
No 491
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.20 E-value=27 Score=21.60 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=13.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q 026145 170 RCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 170 la~~~~~~~~~~~A~~~~~~al~ 192 (243)
.|.-.-..|++++|+..|..++.
T Consensus 12 ~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 12 QAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444455677777666666654
No 492
>PF13213 DUF4021: Protein of unknown function (DUF4021)
Probab=51.13 E-value=6.8 Score=21.45 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=14.9
Q ss_pred CCCCccccccccccccee
Q 026145 1 MEGGFGLAFNSVLPVARL 18 (243)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (243)
|-|-+||+...|++-.|-
T Consensus 26 MNGlYGMPET~IED~dH~ 43 (46)
T PF13213_consen 26 MNGLYGMPETDIEDKDHA 43 (46)
T ss_pred hccccCCCcccccccccc
Confidence 678999999999987653
No 493
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=51.10 E-value=1.5e+02 Score=24.86 Aligned_cols=47 Identities=21% Similarity=0.097 Sum_probs=41.5
Q ss_pred hcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHH
Q 026145 141 KANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE 189 (243)
Q Consensus 141 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 189 (243)
....-+|+..++.++..+|.|. .+...+..+|..+|-.+.|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~--~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNY--QLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4456788889999999999987 8888999999999999999999964
No 494
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.4e+02 Score=24.46 Aligned_cols=92 Identities=12% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHhhcc--------CCCCchHHHHHhHHHHHHHcCCH-------------------HHHH
Q 026145 132 RKRAEAEFEKANFSEADGFLSQAIEL--------KPFGGIHVLYKDRCLARLTMGNF-------------------SAAL 184 (243)
Q Consensus 132 ~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~la~~~~~~~~~-------------------~~A~ 184 (243)
..+|+...+.+++++|+..|.+.+.. ..+.. ....+++..|...|++ ....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE--~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~ 84 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQE--ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKIT 84 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHH--HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHH
Q ss_pred HHHHHHHHhCCCc---------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 026145 185 EDVREALELAPNY---------------------------TEAYICQGDVFLAMDQYDAAEKSYSTCL 225 (243)
Q Consensus 185 ~~~~~al~~~p~~---------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al 225 (243)
...+..++..|.. ...-..+..++++.|+|.+|+...+-.+
T Consensus 85 KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 85 KIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
No 495
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=50.28 E-value=68 Score=28.59 Aligned_cols=65 Identities=17% Similarity=0.027 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHHHHhhccC-----CCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHH
Q 026145 126 LEALALRKRAEAEFE--KANFSEADGFLSQAIELK-----PFGGIHVLYKDRCLARLTMGNFSAALEDVREALE 192 (243)
Q Consensus 126 ~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~~~-----p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 192 (243)
..+.++-.+|..--- ...-..++++|.+|+... ..+. ..|..+|-.+++.++|.+|+..+-.+-.
T Consensus 275 ~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv--YPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV--YPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp T-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S--HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc--ccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777765432 344567788999998752 2333 5678889999999999999998877654
No 496
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.07 E-value=88 Score=21.73 Aligned_cols=80 Identities=10% Similarity=0.071 Sum_probs=42.9
Q ss_pred HhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHH-HHHhCCCc-------HHHHHHHHHHHHHc
Q 026145 140 EKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVRE-ALELAPNY-------TEAYICQGDVFLAM 211 (243)
Q Consensus 140 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-al~~~p~~-------~~~~~~la~~~~~~ 211 (243)
..+.+...+.+++..+..++.++ ..+..+..+|.+. +..+.++.++. .-..+++. ...|-....+|.+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~--~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENP--ALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccch--hHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 45677788888888887766554 5666666666543 34455555542 10011100 11233444555666
Q ss_pred CCHHHHHHHHH
Q 026145 212 DQYDAAEKSYS 222 (243)
Q Consensus 212 g~~~~A~~~~~ 222 (243)
|++++|++.+-
T Consensus 96 ~~~~~Al~~~l 106 (140)
T smart00299 96 GNFKDAIVTLI 106 (140)
T ss_pred cCHHHHHHHHH
Confidence 66666665543
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.61 E-value=2.5e+02 Score=26.88 Aligned_cols=110 Identities=20% Similarity=0.130 Sum_probs=62.1
Q ss_pred CeEEEecCCHhHHHHHHHHHhcCCCC---CcchhhHHHHHHHHHHHHHH------------HhcCHHHH--HHHHHHhhc
Q 026145 94 GVVVGHCGTPARASEILMVLCGIKSD---HDAAKNLEALALRKRAEAEF------------EKANFSEA--DGFLSQAIE 156 (243)
Q Consensus 94 g~~~~~~~~~~~a~~~l~~~l~~~~~---~~~~~~~~~~~~~~~a~~~~------------~~~~~~~A--~~~~~~al~ 156 (243)
|......|++.+|++.|...+-.-|- ........+..+...+..|. ..++..++ +..|=.-..
T Consensus 998 gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~ 1077 (1202)
T KOG0292|consen 998 GYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCK 1077 (1202)
T ss_pred HHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCC
Confidence 34445567888999888876632110 00111133334444443332 23344555 334444455
Q ss_pred cCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 026145 157 LKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQ 204 (243)
Q Consensus 157 ~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 204 (243)
+.|.+. ..++..--.++++++++..|-....+.+++.|..+.+-...
T Consensus 1078 Lqp~H~-ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1078 LQPMHR-ILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred CCcHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 666552 22333334567899999999999999999998766554433
No 498
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.30 E-value=1.3e+02 Score=26.50 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Q 026145 167 YKDRCLARLTMGNFSAALEDVREALELAPNYTEAYICQGDVFLAMDQYDAA 217 (243)
Q Consensus 167 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 217 (243)
...++.--+..|+|.=+.+.+++++-.+|++..+....+.++.++|--.|+
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 456777778999999999999999999999999999999999999965554
No 499
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=48.25 E-value=39 Score=31.08 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=54.2
Q ss_pred HHHHHHHH--HHhcCHHHHHHHHHHhhccCCCCchHHHHHhHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 026145 131 LRKRAEAE--FEKANFSEADGFLSQAIELKPFGGIHVLYKDRCLARLTMGNFSAALEDVREALELAPNYTE 199 (243)
Q Consensus 131 ~~~~a~~~--~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~ 199 (243)
..+.+-++ ...++|..++....-++...|.. ..+++.++.+|...++++-|++...-.....|.+..
T Consensus 94 ~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i--~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 94 RSNQASCYMQLGLGEYPKAIPECELALESQPRI--SKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HHHHHHHHhhcCccchhhhcCchhhhhhccchH--HHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 33444443 45689999999999999999984 489999999999999999999998877788888743
No 500
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=47.53 E-value=1.4e+02 Score=23.70 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026145 196 NYTEAYICQGDVFLAMDQYDAAEKSYS 222 (243)
Q Consensus 196 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 222 (243)
.++..+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 457788888888888888888877764
Done!