BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026146
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With
Udp-Glcua And Udp
Length = 625
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILL 71
SI+IPTYN +A+ + + D+E+IV DDGS + +E+V++ + L +
Sbjct: 96 SIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV-- 153
Query: 72 RPRPKKLGLGTAYIH--GLKHASGSFVVIMDADLSHHPKYLPSFIK 115
R K G + GL+ A ++V I+D D++ +P ++ S+++
Sbjct: 154 --RQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 197
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 13/145 (8%)
Query: 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILL 71
SI IP YN I V D E+ + DDGS D T + LQ+ Y +
Sbjct: 378 SIYIPAYNCSKYIVRCVESALNQTI-TDLEVCICDDGSTDDTLRI---LQEHYANHPRVR 433
Query: 72 RPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFI---KKQLETGASIVTGT 128
K G+G+A ++ G ++ +D+D P + + +K L T
Sbjct: 434 FISQKNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNR 493
Query: 129 RYVRSGGV--HGWNL----MRKLTS 147
R G + +G+N KLTS
Sbjct: 494 NIDREGNLISNGYNWPIYSREKLTS 518
>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
Galnac And Udp
Length = 624
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 6/106 (5%)
Query: 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILL 71
SI+IPTYN +A+ + + D+E+IV DDGS + +E+V++ + L +
Sbjct: 95 SIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREFESLLNIKYV-- 152
Query: 72 RPRPKKLGLGTAYIH--GLKHASGSFVVIMDADLSHHPKYLPSFIK 115
R K G + GL+ A ++V I+D D++ +P ++ S+++
Sbjct: 153 --RQKDYGYQLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYME 196
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 13/145 (8%)
Query: 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILL 71
SI IP YN I V D E+ + DDGS D T ++ LQ+ Y +
Sbjct: 377 SIYIPAYNCSKYIVRCVESALNQTI-TDLEVCICDDGSTDDT---LRILQEHYANHPRVR 432
Query: 72 RPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFI---KKQLETGASIVTGT 128
K G+G+A ++ G ++ +D+D P + + +K L T
Sbjct: 433 FISQKNKGIGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNR 492
Query: 129 RYVRSGGV--HGWNL----MRKLTS 147
R G + +G+N KLTS
Sbjct: 493 NIDREGNLISNGYNWPIYSREKLTS 517
>pdb|3E25|A Chain A, Crystal Structure Of M. Tuberculosis Glucosyl-3-
Phosphoglycerate Synthase
pdb|3E26|A Chain A, Crystal Structure Of M. Tuberculosis Glucosyl-3-
Phosphoglycerate Synthase
Length = 337
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 3 ETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ 62
E K S+++P NE I ++ I + + E+IV+D GS D T +++
Sbjct: 37 EAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDT-----EIRA 91
Query: 63 LYGEDRILLRPR-----PKKLGLGTAYIHGLKHASGSFVVIMDADL-SHHPKYLPSFIKK 116
+ R++ R + P + G G A L SG VV +D+DL + HP ++P +
Sbjct: 92 IASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGP 151
Query: 117 QLETGASI 124
L TG I
Sbjct: 152 LL-TGEGI 158
>pdb|4DDZ|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis
pdb|4DE7|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis In Complex With Mg2+ And
Uridine- Diphosphate (Udp)
pdb|4DEC|A Chain A, Crystal Structure Of Glucosyl-3-Phosphoglycerate Synthase
From Mycobacterium Tuberculosis In Complex With Mn2+,
Uridine-Diphosphate (Udp) And Phosphoglyceric Acid (Pga)
Length = 344
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 3 ETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ 62
E K S+++P NE I ++ I + + E+IV+D GS D T +++
Sbjct: 57 EAAKAGRTISVVLPALNEEATIESVIDSISPLVDGLVDELIVLDSGSTDDT-----EIRA 111
Query: 63 LYGEDRILLRPR-----PKKLGLGTAYIHGLKHASGSFVVIMDADL-SHHPKYLPSFIKK 116
+ R++ R + P + G G A L SG VV +D+DL + HP ++P +
Sbjct: 112 IASGARVVSREQALPEVPVRPGKGEALWRSLAATSGDIVVFIDSDLINPHPLFVPWLVGP 171
Query: 117 QLETGASI 124
L TG I
Sbjct: 172 LL-TGEGI 178
>pdb|3BCV|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Bacteroides Fragilis
pdb|3BCV|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Bacteroides Fragilis
Length = 240
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 10 KYSIIIPTYN-ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDR 68
K S+I+P YN E+ + L+ + L D+ EII++DD SPD ++ Y +
Sbjct: 6 KVSVIVPIYNVEKYLDQCVQALLAQTLSDI--EIILIDDESPDNCPKICDDYAAQYPNIK 63
Query: 69 ILLRPRPKKLGLGTAYIHGLKHASGSFV 96
++ + K GLG A GL A+G +V
Sbjct: 64 VIHK---KNAGLGXACNSGLDVATGEYV 88
>pdb|3CKJ|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKN|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKO|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKQ|A Chain A, Crystal Structure Of A Mycobacterial Protein
pdb|3CKV|A Chain A, Crystal Structure Of A Mycobacterial Protein
Length = 329
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 3 ETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ 62
E K S+++P +E I ++ I + + E+IV+D GS D T +++
Sbjct: 42 EAAKAGRTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDT-----EIRA 96
Query: 63 LYGEDRILLRPR-----PKKLGLGTAYIHGLKHASGSFVVIMDADL-SHHPKYLPSFIKK 116
+ R++ R + P + G G A L + G VV +D+DL + HP ++P +
Sbjct: 97 VAAGARVVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGP 156
Query: 117 QL 118
L
Sbjct: 157 LL 158
>pdb|3L7J|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7J|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
V
pdb|3L7K|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7K|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
pdb|3L7L|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n
+ Minute Soak)
Length = 729
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDR 68
NK +II+ YN I + I K R DF +I+V+DGS D +++++ + + Y ++
Sbjct: 2 NKLTIIVTYYNAEEYITGCLESI-KQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKN- 59
Query: 69 ILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDAD 102
I + G A L+ + + +DAD
Sbjct: 60 IRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|3L7I|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf
pdb|3L7I|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf
Length = 729
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDR 68
NK +II+ YN I + I K R DF +I+V+DGS D +++++ + + Y ++
Sbjct: 2 NKLTIIVTYYNAEEYITGCLESI-KQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKN- 59
Query: 69 ILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDAD 102
I + G A L+ + + +DAD
Sbjct: 60 IRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|3L7M|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|B Chain B, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|C Chain C, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
pdb|3L7M|D Chain D, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a
Length = 729
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDR 68
NK +II+ YN I + I K R DF +I+V+DGS D +++++ + + Y ++
Sbjct: 2 NKLTIIVTYYNAEEYITGCLESI-KQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKN- 59
Query: 69 ILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDAD 102
I + G A L+ + + +DAD
Sbjct: 60 IRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
>pdb|1QG8|A Chain A, Native (Magnesium-Containing) Spsa From Bacillus Subtilis
pdb|1QGQ|A Chain A, Udp-manganese Complex Of Spsa From Bacillus Subtilis
pdb|1QGS|A Chain A, Udp-Magnesium Complex Of Spsa From Bacillus Subtilis
pdb|1H7L|A Chain A, Dtdp-Magnesium Complex Of Spsa From Bacillus Subtilis
pdb|1H7Q|A Chain A, Dtdp-Manganese Complex Of Spsa From Bacillus Subtilis
Length = 255
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 70/176 (39%), Gaps = 11/176 (6%)
Query: 10 KYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQ-----QLY 64
K S+I+ +YN+ +A + I DFE+ ++DD S + T V++ + Y
Sbjct: 2 KVSVIMTSYNKSDYVAKSISSILSQTFS-DFELFIMDDNSNEETLNVIRPFLNDNRVRFY 60
Query: 65 GEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASI 124
D ++ R +K ++ A G ++ D + P L + ++L+T
Sbjct: 61 QSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMV-RELDTHPE- 118
Query: 125 VTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDV 180
Y S H N R + AQ + W + +++ SVLE V
Sbjct: 119 -KAVIYSASKTYH-LNENRDIVKETVRPAAQ-VTWNAPCAIDHCSVMHRYSVLEKV 171
>pdb|3E9U|A Chain A, Crystal Structure Of Calx Cbd2 Domain
Length = 162
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 36 RDVDFEI------IVVDDGSPDGTQEVVKQ-LQQLYGEDRILLRPRPKKLGLGTAYIH 86
+DV F++ + DDG +EV K+ +Q L DRILL +P+ L TAY+
Sbjct: 87 KDVSFKVHIGEPRLAPDDGLAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVR 144
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 12/132 (9%)
Query: 5 NKNKNKY-------SIIIPTYNERLNIAL--IVYLIFKHLRDVDFEIIVVDDGSP-DGTQ 54
N N +Y SIIIP +NE + L + ++ + ++ EI++VDD S + +
Sbjct: 101 NCNSKRYLETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLK 160
Query: 55 EVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFI 114
+ ++ L+ RIL K+ GL + G A+G + +D+ + +LP +
Sbjct: 161 KPLEDYMALFPSVRILRTK--KREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLL 218
Query: 115 KKQLETGASIVT 126
+ +IV
Sbjct: 219 DRIARNRKTIVC 230
>pdb|1YGM|A Chain A, Nmr Structure Of Mistic
Length = 118
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 1 MEETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQL 60
M+ T++ K + S I NE L+ + +Y + ++D +I +DD T E++KQ
Sbjct: 31 MKVTSEEKEQLSTAIDRMNEGLDAFIQLY----NESEIDEPLIQLDDD----TAELMKQA 82
Query: 61 QQLYGEDRI 69
+ +YG++++
Sbjct: 83 RDMYGQEKL 91
>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV1|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 181 ISSCVSKGYVFQMEMIVR-ACRKGYHIEEV-PITFVDRVFGSSKLGGSEIVEYLK 233
I++CV G+ M +V+ G I ++ P +D++ ++ GG+EIVE+LK
Sbjct: 166 INACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLK 220
>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|C Chain C, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GUZ|D Chain D, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 181 ISSCVSKGYVFQMEMIVR-ACRKGYHIEEV-PITFVDRVFGSSKLGGSEIVEYLK 233
I++CV G+ M +V+ G I ++ P +D++ ++ GG+EIVE+LK
Sbjct: 166 INACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHLK 220
>pdb|1OY0|A Chain A, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|B Chain B, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|C Chain C, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|D Chain D, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
pdb|1OY0|E Chain E, The Crystal Structure Of The First Enzyme Of Pantothenate
Biosynthetic Pathway, Ketopantoate
Hydroxymethyltransferase From Mycobacterium Tuberculosis
Shows A Decameric Assembly And Terminal Helix-Swapping
Length = 281
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 128 TRYVRSGGVHGWNL---------MRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKS--- 175
TR+++ GG H L + LT+ G V+A P + G FR+ +
Sbjct: 119 TRFLKDGGAHAVKLEGGERVAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGDAA 178
Query: 176 --VLEDVISSCVSKGYVFQMEMI 196
+ D I+ + + MEM+
Sbjct: 179 EQTIADAIAVAEAGAFAVVMEMV 201
>pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis
pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
Bacillus Anthracis Complexed With Atp
Length = 307
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Query: 4 TNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVV-----DDGSPDGTQE 55
N +KNKY I+ T NE+ + + + +D+DF ++ + +DG+ GT E
Sbjct: 29 ANLDKNKYEIVPITLNEKXD-------LIEKAKDIDFALLALHGKYGEDGTVQGTLE 78
>pdb|4GS3|A Chain A, Dimeric Structure Of The N-terminal Domain Of Prib Protein
From Thermoanaerobacter Tencongensis Solved Ab Initio
Length = 107
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 103 LSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGV 162
LS YLP I +L G ++ GTR G + +N RK G N L T+ +
Sbjct: 45 LSETKDYLPITISNRLFEGMNLEVGTRVKIEGQLRSYN--RKSPEEGKNKLILTVFARDI 102
Query: 163 S 163
S
Sbjct: 103 S 103
>pdb|4F1J|A Chain A, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1J|B Chain B, Crystal Structure Of The Mg2+ Loaded Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|A Chain A, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
pdb|4F1K|B Chain B, Crystal Structure Of The Mg2+ Free Vwa Domain Of
Plasmodium Falciparum Trap Protein
Length = 203
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 3 ETNKNKNKYSIIIPTYNE------RLNIALIVYLIFKHLRD-VDFE-----IIVVDDGSP 50
+ +KNK K III + R N++ + + KHL D ++ E ++++ DG P
Sbjct: 67 DASKNKEKALIIIKSLLSTNLPYGRTNLSDALLQVRKHLNDRINRENANQLVVILTDGIP 126
Query: 51 DGTQEVVKQLQQL 63
D Q+ +K+ ++L
Sbjct: 127 DSIQDSLKESRKL 139
>pdb|3RB7|A Chain A, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|B Chain B, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|E Chain E, Crystal Structure Of Cbd12 From Calx1.2
pdb|3RB7|G Chain G, Crystal Structure Of Cbd12 From Calx1.2
Length = 298
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 49 SPDGT-----QEVVKQ-LQQLYGEDRILLRPRPKKLGLGTAYIH 86
+PD T +EV K+ +Q L DRILL +P+ L TAY+
Sbjct: 216 APDSTHYPKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVR 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,262,453
Number of Sequences: 62578
Number of extensions: 297440
Number of successful extensions: 749
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 739
Number of HSP's gapped (non-prelim): 22
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)