Query 026146
Match_columns 242
No_of_seqs 156 out of 1672
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 04:19:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02726 dolichyl-phosphate be 100.0 1.9E-41 4E-46 260.8 26.7 240 1-240 1-241 (243)
2 KOG2978 Dolichol-phosphate man 100.0 1.7E-39 3.6E-44 225.7 21.3 234 8-241 2-237 (238)
3 cd06442 DPM1_like DPM1_like re 100.0 1.4E-36 3.1E-41 231.1 24.7 223 13-237 1-223 (224)
4 cd02520 Glucosylceramide_synth 100.0 1.5E-35 3.2E-40 220.9 17.6 188 9-232 1-193 (196)
5 PTZ00260 dolichyl-phosphate be 100.0 5.2E-34 1.1E-38 227.3 25.7 232 7-240 68-314 (333)
6 cd06427 CESA_like_2 CESA_like_ 100.0 1.9E-34 4.1E-39 221.8 20.5 226 9-240 1-235 (241)
7 cd04188 DPG_synthase DPG_synth 100.0 2.9E-34 6.2E-39 216.5 21.2 204 13-217 1-208 (211)
8 cd06437 CESA_CaSu_A2 Cellulose 100.0 3.5E-34 7.5E-39 219.1 20.0 219 9-232 1-229 (232)
9 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 2.5E-34 5.3E-39 227.7 19.3 208 12-219 1-227 (299)
10 PRK11204 N-glycosyltransferase 100.0 1.1E-33 2.4E-38 234.0 20.8 225 7-239 52-283 (420)
11 cd06421 CESA_CelA_like CESA_Ce 100.0 5.4E-33 1.2E-37 212.7 19.0 222 9-235 1-230 (234)
12 PRK14583 hmsR N-glycosyltransf 100.0 1.1E-32 2.3E-37 228.7 21.7 228 7-238 73-303 (444)
13 TIGR03472 HpnI hopanoid biosyn 100.0 1.7E-32 3.7E-37 222.9 20.4 224 6-235 38-272 (373)
14 PF13641 Glyco_tranf_2_3: Glyc 100.0 2.7E-34 5.9E-39 219.2 8.8 222 9-233 1-227 (228)
15 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 6.4E-32 1.4E-36 223.5 22.8 231 6-239 46-290 (439)
16 cd06913 beta3GnTL1_like Beta 1 100.0 9E-32 2E-36 204.0 20.5 207 13-221 1-214 (219)
17 PRK10073 putative glycosyl tra 100.0 1.2E-31 2.7E-36 213.6 21.9 213 5-222 2-222 (328)
18 PRK10714 undecaprenyl phosphat 100.0 7.2E-31 1.6E-35 208.8 25.3 219 6-236 3-223 (325)
19 cd02525 Succinoglycan_BP_ExoA 100.0 5E-32 1.1E-36 209.2 18.2 223 10-239 1-231 (249)
20 cd06435 CESA_NdvC_like NdvC_li 100.0 3.8E-32 8.3E-37 208.4 16.8 223 12-239 1-232 (236)
21 cd06439 CESA_like_1 CESA_like_ 100.0 3.3E-31 7.1E-36 205.0 21.4 221 6-236 26-249 (251)
22 TIGR03469 HonB hopene-associat 100.0 6.3E-31 1.4E-35 214.4 20.7 199 7-210 38-255 (384)
23 cd04184 GT2_RfbC_Mx_like Myxoc 100.0 7.8E-32 1.7E-36 201.9 14.2 196 9-216 1-200 (202)
24 cd04195 GT2_AmsE_like GT2_AmsE 100.0 2.4E-31 5.2E-36 199.1 15.3 195 12-215 1-199 (201)
25 cd04192 GT_2_like_e Subfamily 100.0 1.3E-30 2.7E-35 198.9 19.1 194 13-211 1-203 (229)
26 cd06433 GT_2_WfgS_like WfgS an 100.0 7.2E-31 1.6E-35 196.3 16.1 197 12-221 1-199 (202)
27 PRK10063 putative glycosyl tra 100.0 3.3E-30 7.3E-35 197.9 20.0 202 9-225 1-205 (248)
28 cd06434 GT2_HAS Hyaluronan syn 100.0 6.7E-31 1.5E-35 201.3 15.7 218 10-234 1-231 (235)
29 PRK11498 bcsA cellulose syntha 100.0 5E-30 1.1E-34 221.9 21.0 226 7-240 258-493 (852)
30 cd04185 GT_2_like_b Subfamily 100.0 1.6E-30 3.4E-35 194.8 15.3 174 13-222 1-178 (202)
31 COG1216 Predicted glycosyltran 100.0 1.4E-30 3E-35 206.4 14.8 213 8-225 2-228 (305)
32 PRK10018 putative glycosyl tra 100.0 1.3E-29 2.7E-34 197.0 18.9 207 6-221 2-211 (279)
33 TIGR03030 CelA cellulose synth 100.0 1.6E-29 3.4E-34 219.5 20.6 230 7-240 129-382 (713)
34 cd04196 GT_2_like_d Subfamily 100.0 2.3E-30 5E-35 195.5 12.9 205 12-222 1-209 (214)
35 cd04179 DPM_DPG-synthase_like 100.0 1.7E-29 3.8E-34 186.5 16.5 184 13-199 1-185 (185)
36 cd02526 GT2_RfbF_like RfbF is 100.0 2.9E-30 6.3E-35 198.1 10.6 200 13-222 1-209 (237)
37 cd02522 GT_2_like_a GT_2_like_ 100.0 8.3E-29 1.8E-33 188.0 18.2 184 11-215 1-184 (221)
38 cd04187 DPM1_like_bac Bacteria 100.0 4.2E-28 9E-33 178.6 18.3 178 13-198 1-180 (181)
39 PRK13915 putative glucosyl-3-p 100.0 9.5E-28 2.1E-32 189.0 20.5 225 6-240 28-264 (306)
40 cd04186 GT_2_like_c Subfamily 100.0 2.4E-28 5.1E-33 177.1 15.6 164 13-217 1-165 (166)
41 cd06420 GT2_Chondriotin_Pol_N 100.0 2.8E-28 6E-33 179.6 15.8 178 13-217 1-181 (182)
42 COG1215 Glycosyltransferases, 100.0 1.4E-27 3E-32 199.0 17.1 228 8-239 53-288 (439)
43 PF00535 Glycos_transf_2: Glyc 100.0 2.2E-28 4.8E-33 177.4 10.8 167 12-181 1-169 (169)
44 PRK14716 bacteriophage N4 adso 100.0 2.9E-26 6.2E-31 189.9 22.4 228 7-239 64-328 (504)
45 TIGR01556 rhamnosyltran L-rham 100.0 1.5E-27 3.2E-32 187.5 13.7 198 16-222 1-206 (281)
46 PF10111 Glyco_tranf_2_2: Glyc 99.9 1.6E-26 3.4E-31 181.0 17.1 208 12-222 1-227 (281)
47 cd06438 EpsO_like EpsO protein 99.9 3.8E-26 8.2E-31 168.4 15.8 172 13-195 1-183 (183)
48 cd04191 Glucan_BSP_ModH Glucan 99.9 1.7E-25 3.6E-30 171.8 19.7 222 11-236 1-252 (254)
49 cd04190 Chitin_synth_C C-termi 99.9 1.7E-26 3.7E-31 177.6 9.9 196 13-235 1-241 (244)
50 cd06436 GlcNAc-1-P_transferase 99.9 9.1E-25 2E-29 162.0 15.0 165 13-185 1-183 (191)
51 cd06423 CESA_like CESA_like is 99.9 3.6E-25 7.9E-30 161.5 10.7 174 13-192 1-180 (180)
52 KOG2977 Glycosyltransferase [G 99.9 5.6E-23 1.2E-27 152.7 17.1 230 9-240 67-311 (323)
53 PRK05454 glucosyltransferase M 99.9 1.8E-22 3.8E-27 173.0 21.2 229 7-239 122-380 (691)
54 PRK11234 nfrB bacteriophage N4 99.9 2.4E-22 5.2E-27 173.1 20.5 203 6-213 60-282 (727)
55 PRK15489 nfrB bacteriophage N4 99.9 6.5E-20 1.4E-24 156.4 20.3 200 7-211 69-288 (703)
56 cd02511 Beta4Glucosyltransfera 99.8 3.2E-20 7E-25 141.5 13.0 106 10-127 1-106 (229)
57 cd00761 Glyco_tranf_GTA_type G 99.8 2.5E-19 5.4E-24 127.5 13.7 152 13-206 1-154 (156)
58 COG0463 WcaA Glycosyltransfera 99.8 2.1E-18 4.5E-23 130.7 12.6 106 8-117 2-107 (291)
59 KOG3738 Predicted polypeptide 99.7 7.4E-18 1.6E-22 131.0 6.1 206 6-216 121-346 (559)
60 KOG3736 Polypeptide N-acetylga 99.7 4.4E-18 9.6E-23 140.9 4.2 212 6-219 139-371 (578)
61 PF13506 Glyco_transf_21: Glyc 99.7 3.3E-16 7.1E-21 113.8 11.0 134 79-216 17-153 (175)
62 KOG3737 Predicted polypeptide 99.7 1.5E-16 3.3E-21 123.6 8.3 211 6-218 152-388 (603)
63 KOG2547 Ceramide glucosyltrans 99.6 5.8E-15 1.3E-19 114.1 9.6 202 7-212 83-292 (431)
64 PF13632 Glyco_trans_2_3: Glyc 99.5 7.8E-14 1.7E-18 103.6 10.5 136 95-234 1-142 (193)
65 PF13712 Glyco_tranf_2_5: Glyc 99.5 8E-14 1.7E-18 104.6 9.7 175 11-217 1-198 (217)
66 cd02514 GT13_GLCNAC-TI GT13_GL 99.5 5.8E-13 1.3E-17 105.1 12.3 106 11-121 2-129 (334)
67 cd00899 b4GalT Beta-4-Galactos 99.1 4.3E-09 9.2E-14 78.0 12.6 150 9-211 2-159 (219)
68 PF03142 Chitin_synth_2: Chiti 99.0 1E-08 2.3E-13 85.6 14.5 222 10-232 26-371 (527)
69 PLN02893 Cellulose synthase-li 99.0 1.6E-08 3.4E-13 87.0 12.8 171 67-241 264-500 (734)
70 COG4092 Predicted glycosyltran 98.9 4.4E-07 9.4E-12 68.0 15.6 191 8-203 1-217 (346)
71 COG2943 MdoH Membrane glycosyl 98.8 5.4E-07 1.2E-11 73.9 16.3 198 8-212 143-371 (736)
72 PF05679 CHGN: Chondroitin N-a 98.6 1.7E-06 3.6E-11 73.2 12.8 199 7-213 245-463 (499)
73 PF13704 Glyco_tranf_2_4: Glyc 98.5 6.8E-07 1.5E-11 58.5 8.1 80 18-106 1-85 (97)
74 PF03071 GNT-I: GNT-I family; 98.5 3.5E-07 7.6E-12 74.4 8.0 197 7-225 91-311 (434)
75 PF03452 Anp1: Anp1; InterPro 98.4 7.8E-06 1.7E-10 62.6 12.2 123 6-132 22-179 (269)
76 KOG3588 Chondroitin synthase 1 98.4 3.3E-06 7.1E-11 66.3 9.1 201 6-214 226-434 (494)
77 KOG3916 UDP-Gal:glucosylcerami 98.3 6.2E-05 1.3E-09 58.7 13.6 151 7-210 149-307 (372)
78 KOG2571 Chitin synthase/hyalur 98.0 1.8E-05 3.9E-10 69.4 7.7 139 94-234 442-596 (862)
79 PF11735 CAP59_mtransfer: Cryp 98.0 0.00019 4.1E-09 54.6 11.4 168 11-180 2-212 (241)
80 PLN02189 cellulose synthase 97.9 2.2E-05 4.9E-10 70.0 6.4 53 68-120 499-561 (1040)
81 cd00218 GlcAT-I Beta1,3-glucur 97.9 0.00011 2.5E-09 54.6 8.8 100 9-114 1-117 (223)
82 PLN02458 transferase, transfer 97.8 0.00014 3E-09 56.8 8.6 102 7-114 110-224 (346)
83 TIGR02460 osmo_MPGsynth mannos 97.8 0.0083 1.8E-07 47.4 17.5 166 9-180 50-261 (381)
84 PRK14503 mannosyl-3-phosphogly 97.7 0.0097 2.1E-07 47.3 17.2 166 9-180 51-262 (393)
85 PF11397 GlcNAc: Glycosyltrans 97.7 0.00039 8.6E-09 55.8 9.1 207 11-219 2-264 (343)
86 KOG1476 Beta-1,3-glucuronyltra 97.6 0.00046 1E-08 53.5 8.8 105 8-119 86-207 (330)
87 PF03214 RGP: Reversibly glyco 97.6 0.00015 3.2E-09 56.7 6.1 112 6-121 5-120 (348)
88 PLN02638 cellulose synthase A 97.6 0.00015 3.2E-09 65.2 6.6 53 68-120 517-579 (1079)
89 PF09488 Osmo_MPGsynth: Mannos 97.5 0.0013 2.8E-08 52.1 9.0 103 9-117 50-183 (381)
90 PF02709 Glyco_transf_7C: N-te 97.4 0.00012 2.7E-09 45.5 2.5 50 162-211 16-67 (78)
91 PLN02195 cellulose synthase A 97.4 0.0005 1.1E-08 61.3 6.7 53 68-120 420-482 (977)
92 PF06306 CgtA: Beta-1,4-N-acet 97.3 0.0018 3.8E-08 50.5 7.9 118 9-131 87-213 (347)
93 PF01762 Galactosyl_T: Galacto 97.2 0.0012 2.6E-08 49.0 6.2 179 23-210 5-195 (195)
94 PLN02248 cellulose synthase-li 97.2 0.00046 1E-08 62.3 4.3 53 67-119 585-647 (1135)
95 PF04666 Glyco_transf_54: N-Ac 97.1 0.0056 1.2E-07 48.2 9.2 111 8-120 51-197 (297)
96 PLN03180 reversibly glycosylat 96.9 0.0014 3.1E-08 51.4 4.5 102 3-118 5-126 (346)
97 PF12804 NTP_transf_3: MobA-li 96.9 0.0061 1.3E-07 43.5 7.4 98 19-128 22-122 (160)
98 PLN02917 CMP-KDO synthetase 96.9 0.013 2.8E-07 46.4 9.7 191 8-211 45-267 (293)
99 PF13733 Glyco_transf_7N: N-te 96.8 0.003 6.5E-08 43.2 4.9 76 7-107 45-126 (136)
100 PF11316 Rhamno_transf: Putati 96.8 0.0042 9.1E-08 47.3 6.2 90 25-118 45-140 (234)
101 cd02540 GT2_GlmU_N_bac N-termi 96.8 0.014 3.1E-07 44.3 9.3 102 15-127 21-125 (229)
102 KOG1413 N-acetylglucosaminyltr 96.8 0.025 5.4E-07 44.9 10.3 129 7-135 65-212 (411)
103 cd02508 ADP_Glucose_PP ADP-glu 96.7 0.11 2.4E-06 38.7 13.2 156 14-210 23-192 (200)
104 COG1209 RfbA dTDP-glucose pyro 96.7 0.036 7.8E-07 42.6 10.4 188 14-212 25-216 (286)
105 PF05060 MGAT2: N-acetylglucos 96.7 0.043 9.4E-07 44.1 11.2 51 8-58 30-80 (356)
106 cd04182 GT_2_like_f GT_2_like_ 96.7 0.015 3.3E-07 42.5 8.3 99 19-127 24-126 (186)
107 PF01697 Glyco_transf_92: Glyc 96.7 0.027 5.9E-07 44.3 10.2 105 10-120 2-135 (285)
108 cd04181 NTP_transferase NTP_tr 96.7 0.063 1.4E-06 40.3 11.7 106 16-128 25-130 (217)
109 PF09258 Glyco_transf_64: Glyc 96.6 0.0022 4.9E-08 49.3 3.2 108 11-126 1-109 (247)
110 PRK14502 bifunctional mannosyl 96.5 0.042 9.2E-07 48.1 10.6 104 9-118 55-189 (694)
111 TIGR00466 kdsB 3-deoxy-D-manno 96.3 0.14 3.1E-06 39.2 12.0 180 19-211 22-223 (238)
112 PRK05450 3-deoxy-manno-octulos 96.3 0.032 6.8E-07 43.0 8.4 96 21-127 27-126 (245)
113 TIGR03310 matur_ygfJ molybdenu 96.3 0.081 1.7E-06 38.8 10.0 100 19-127 23-125 (188)
114 cd06422 NTP_transferase_like_1 96.2 0.1 2.3E-06 39.4 10.7 106 14-127 24-132 (221)
115 PRK00317 mobA molybdopterin-gu 96.2 0.062 1.3E-06 39.7 9.3 93 19-126 28-123 (193)
116 PLN02400 cellulose synthase 96.2 0.0064 1.4E-07 55.2 4.4 53 68-120 524-586 (1085)
117 cd06425 M1P_guanylylT_B_like_N 96.1 0.098 2.1E-06 39.9 10.0 107 15-127 26-134 (233)
118 TIGR03202 pucB xanthine dehydr 96.1 0.11 2.3E-06 38.3 9.9 102 19-126 24-130 (190)
119 cd02503 MobA MobA catalyzes th 96.0 0.066 1.4E-06 39.0 8.4 93 19-127 24-118 (181)
120 cd06915 NTP_transferase_WcbM_l 96.0 0.17 3.7E-06 38.1 10.9 174 21-211 29-206 (223)
121 cd06428 M1P_guanylylT_A_like_N 95.9 0.13 2.8E-06 40.0 10.0 109 14-127 25-136 (257)
122 COG1213 Predicted sugar nucleo 95.9 0.016 3.5E-07 43.5 4.6 90 20-117 30-121 (239)
123 PRK15480 glucose-1-phosphate t 95.7 0.36 7.9E-06 38.3 11.8 105 14-126 28-135 (292)
124 PRK02726 molybdopterin-guanine 95.6 0.56 1.2E-05 34.9 12.0 88 19-119 31-120 (200)
125 PF02434 Fringe: Fringe-like; 95.5 0.012 2.5E-07 45.6 2.9 113 91-214 85-207 (252)
126 TIGR01207 rmlA glucose-1-phosp 95.4 0.37 8.1E-06 38.1 11.1 104 14-125 24-130 (286)
127 PRK13368 3-deoxy-manno-octulos 95.4 0.27 5.8E-06 37.6 10.1 91 22-122 28-119 (238)
128 cd02516 CDP-ME_synthetase CDP- 95.4 0.25 5.3E-06 37.2 9.8 97 19-122 26-126 (218)
129 cd04189 G1P_TT_long G1P_TT_lon 95.4 0.39 8.4E-06 36.6 10.9 185 14-211 25-213 (236)
130 cd02518 GT2_SpsF SpsF is a gly 95.3 0.22 4.7E-06 38.0 9.1 100 19-126 22-122 (233)
131 PF00483 NTP_transferase: Nucl 95.2 0.18 3.8E-06 38.8 8.6 184 15-210 25-222 (248)
132 PLN02190 cellulose synthase-li 95.2 0.028 6E-07 49.4 4.4 52 69-120 254-315 (756)
133 COG0746 MobA Molybdopterin-gua 95.2 0.12 2.6E-06 38.2 7.2 93 18-125 26-120 (192)
134 PRK14355 glmU bifunctional N-a 95.1 0.25 5.5E-06 41.9 9.8 103 14-126 25-130 (459)
135 PF03360 Glyco_transf_43: Glyc 95.1 0.048 1E-06 40.6 4.7 70 38-112 9-97 (207)
136 PF13896 Glyco_transf_49: Glyc 94.8 0.97 2.1E-05 36.4 11.9 44 76-119 111-154 (317)
137 PRK14352 glmU bifunctional N-a 94.8 0.4 8.6E-06 41.0 10.2 184 14-211 26-223 (482)
138 TIGR01105 galF UTP-glucose-1-p 94.7 1.4 3.1E-05 35.0 12.6 110 14-127 28-164 (297)
139 TIGR02665 molyb_mobA molybdopt 94.6 0.18 3.9E-06 36.9 6.8 95 19-126 25-122 (186)
140 TIGR03584 PseF pseudaminic aci 94.6 0.56 1.2E-05 35.6 9.5 153 19-180 22-186 (222)
141 cd02524 G1P_cytidylyltransfera 94.5 0.93 2E-05 35.1 10.9 48 77-125 101-149 (253)
142 PLN03153 hypothetical protein; 94.4 0.27 5.9E-06 41.6 8.0 110 78-210 188-313 (537)
143 COG1208 GCD1 Nucleoside-diphos 94.4 1.5 3.4E-05 35.9 12.3 180 15-210 27-213 (358)
144 TIGR01173 glmU UDP-N-acetylglu 94.4 0.25 5.5E-06 41.7 8.1 96 15-121 23-120 (451)
145 TIGR01099 galU UTP-glucose-1-p 94.4 0.78 1.7E-05 35.6 10.3 108 14-125 25-153 (260)
146 PRK14360 glmU bifunctional N-a 94.3 0.28 6.1E-06 41.4 8.2 96 21-125 29-127 (450)
147 PF05212 DUF707: Protein of un 94.3 0.048 1E-06 42.3 3.2 126 91-217 115-251 (294)
148 PRK00155 ispD 2-C-methyl-D-ery 94.0 1.5 3.3E-05 33.2 11.1 93 21-121 31-125 (227)
149 cd02538 G1P_TT_short G1P_TT_sh 94.0 1.4 3.1E-05 33.7 11.0 101 20-126 30-132 (240)
150 PRK14489 putative bifunctional 94.0 0.29 6.3E-06 40.2 7.4 96 19-127 30-128 (366)
151 cd02541 UGPase_prokaryotic Pro 94.0 2.3 5E-05 33.1 12.2 193 14-212 25-245 (267)
152 cd04183 GT2_BcE_like GT2_BcbE_ 94.0 1.1 2.5E-05 33.9 10.3 102 15-123 24-127 (231)
153 KOG3917 Beta-1,4-galactosyltra 93.9 0.28 6E-06 36.6 6.3 148 9-210 74-228 (310)
154 TIGR02623 G1P_cyt_trans glucos 93.9 2 4.4E-05 33.2 11.6 50 76-126 101-150 (254)
155 PRK14353 glmU bifunctional N-a 93.9 0.45 9.7E-06 40.2 8.5 97 22-127 34-133 (446)
156 PRK14358 glmU bifunctional N-a 93.8 0.56 1.2E-05 40.1 9.1 95 22-126 36-133 (481)
157 cd06426 NTP_transferase_like_2 93.7 0.96 2.1E-05 34.0 9.4 177 15-211 24-203 (220)
158 cd02517 CMP-KDO-Synthetase CMP 93.7 1.3 2.8E-05 33.9 10.1 98 19-126 24-125 (239)
159 cd02509 GDP-M1P_Guanylyltransf 93.6 1.9 4.2E-05 33.9 11.2 95 14-114 26-125 (274)
160 cd02513 CMP-NeuAc_Synthase CMP 93.6 1.1 2.4E-05 33.7 9.6 51 79-129 79-135 (223)
161 KOG2287 Galactosyltransferases 93.5 1.9 4.1E-05 35.2 11.2 195 9-211 95-303 (349)
162 cd04198 eIF-2B_gamma_N The N-t 93.5 2.4 5.3E-05 31.8 11.9 104 14-126 25-133 (214)
163 PRK14354 glmU bifunctional N-a 93.5 0.85 1.8E-05 38.7 9.6 98 15-124 25-125 (458)
164 TIGR00454 conserved hypothetic 93.4 0.78 1.7E-05 33.7 8.1 92 19-121 25-118 (183)
165 TIGR03552 F420_cofC 2-phospho- 93.3 0.3 6.5E-06 36.1 6.0 59 68-129 65-126 (195)
166 cd02523 PC_cytidylyltransferas 93.2 1.1 2.5E-05 33.9 9.2 89 15-114 24-114 (229)
167 PRK14357 glmU bifunctional N-a 92.8 1.1 2.4E-05 37.9 9.3 101 14-127 22-124 (448)
168 PRK13385 2-C-methyl-D-erythrit 92.8 2 4.4E-05 32.6 10.0 98 19-123 28-129 (230)
169 PF01755 Glyco_transf_25: Glyc 92.7 2.7 5.8E-05 31.1 10.4 100 17-118 9-111 (200)
170 cd06431 GT8_LARGE_C LARGE cata 92.7 3.5 7.5E-05 32.6 11.3 105 10-117 2-121 (280)
171 KOG1022 Acetylglucosaminyltran 92.5 0.26 5.7E-06 41.5 4.9 112 7-126 441-553 (691)
172 PF03552 Cellulose_synt: Cellu 92.5 0.079 1.7E-06 46.5 2.0 55 67-121 166-230 (720)
173 TIGR01208 rmlA_long glucose-1- 92.5 1.9 4.1E-05 35.2 10.0 183 16-212 26-215 (353)
174 PRK10122 GalU regulator GalF; 92.2 5 0.00011 32.0 12.8 108 14-126 28-163 (297)
175 PRK14356 glmU bifunctional N-a 92.0 0.67 1.5E-05 39.3 7.1 89 20-118 32-124 (456)
176 PLN02436 cellulose synthase A 91.7 0.13 2.7E-06 47.2 2.4 53 68-120 533-595 (1094)
177 PRK05293 glgC glucose-1-phosph 91.4 0.75 1.6E-05 38.0 6.6 105 14-126 28-149 (380)
178 cd00505 Glyco_transf_8 Members 91.4 3.5 7.6E-05 31.7 9.9 96 18-116 10-118 (246)
179 PRK13389 UTP--glucose-1-phosph 91.4 6.3 0.00014 31.5 12.6 109 14-126 33-168 (302)
180 PF07507 WavE: WavE lipopolysa 91.2 0.73 1.6E-05 36.8 6.0 97 19-119 17-122 (311)
181 TIGR00453 ispD 2-C-methyl-D-er 91.2 3.4 7.5E-05 31.0 9.6 94 19-121 25-120 (217)
182 PF09837 DUF2064: Uncharacteri 90.9 2.6 5.6E-05 28.7 7.7 84 38-129 9-95 (122)
183 PLN03133 beta-1,3-galactosyltr 90.9 2.6 5.6E-05 37.1 9.4 162 40-210 419-593 (636)
184 PRK00576 molybdopterin-guanine 90.6 3.6 7.7E-05 29.9 8.9 89 21-125 15-108 (178)
185 cd04194 GT8_A4GalT_like A4GalT 90.4 3.8 8.3E-05 31.5 9.3 94 20-115 11-117 (248)
186 COG1212 KdsB CMP-2-keto-3-deox 89.7 7.3 0.00016 29.5 14.2 184 9-210 2-220 (247)
187 KOG4179 Lysyl hydrolase/glycos 89.7 1.1 2.4E-05 36.8 5.7 108 9-116 3-134 (568)
188 COG1210 GalU UDP-glucose pyrop 88.9 2.8 6.1E-05 32.7 7.2 104 21-127 35-159 (291)
189 cd04197 eIF-2B_epsilon_N The N 88.5 8.7 0.00019 28.8 10.8 97 14-119 25-129 (217)
190 PRK15171 lipopolysaccharide 1, 88.5 11 0.00023 30.7 10.8 106 9-116 24-143 (334)
191 PLN02915 cellulose synthase A 87.5 0.25 5.5E-06 45.2 1.0 53 68-120 455-517 (1044)
192 PRK09451 glmU bifunctional N-a 87.3 2.8 6.1E-05 35.6 7.2 170 22-209 34-215 (456)
193 PLN02190 cellulose synthase-li 86.9 1.6 3.4E-05 39.0 5.5 55 7-61 91-150 (756)
194 PRK09382 ispDF bifunctional 2- 86.9 7.4 0.00016 32.2 9.1 91 21-120 33-124 (378)
195 COG1211 IspD 4-diphosphocytidy 86.4 13 0.00028 28.4 11.7 91 21-118 32-126 (230)
196 KOG2264 Exostosin EXT1L [Signa 86.0 1 2.2E-05 38.5 3.6 92 8-108 648-740 (907)
197 cd06432 GT8_HUGT1_C_like The C 86.0 11 0.00024 29.1 9.3 93 20-116 12-118 (248)
198 COG2266 GTP:adenosylcobinamide 85.5 12 0.00025 27.2 9.6 85 21-118 27-112 (177)
199 PLN02241 glucose-1-phosphate a 85.2 5.1 0.00011 33.9 7.6 107 14-127 28-155 (436)
200 PRK00725 glgC glucose-1-phosph 85.1 15 0.00033 31.0 10.3 107 14-127 40-162 (425)
201 PF01501 Glyco_transf_8: Glyco 85.1 2 4.3E-05 32.8 4.8 95 21-116 11-121 (250)
202 COG1207 GlmU N-acetylglucosami 85.0 12 0.00025 31.3 9.1 177 22-212 31-221 (460)
203 COG2068 Uncharacterized MobA-r 85.0 14 0.0003 27.5 9.1 91 21-120 31-125 (199)
204 PF02348 CTP_transf_3: Cytidyl 84.9 14 0.0003 27.6 9.6 94 20-123 23-120 (217)
205 cd02507 eIF-2B_gamma_N_like Th 84.4 15 0.00033 27.6 9.2 96 14-115 25-124 (216)
206 PHA01631 hypothetical protein 84.4 1.2 2.6E-05 31.6 2.9 65 39-108 17-87 (176)
207 TIGR02091 glgC glucose-1-phosp 84.3 7.4 0.00016 31.8 8.0 104 14-124 23-141 (361)
208 PLN02728 2-C-methyl-D-erythrit 82.4 8.7 0.00019 29.8 7.3 106 8-121 22-147 (252)
209 PRK14490 putative bifunctional 82.0 14 0.0003 30.5 8.8 85 19-117 198-284 (369)
210 COG1861 SpsF Spore coat polysa 81.8 20 0.00044 27.2 10.2 100 20-127 27-127 (241)
211 PRK00844 glgC glucose-1-phosph 81.3 12 0.00027 31.3 8.3 107 14-127 30-150 (407)
212 cd06532 Glyco_transf_25 Glycos 80.2 16 0.00034 24.9 8.4 91 15-108 5-98 (128)
213 TIGR01479 GMP_PMI mannose-1-ph 79.5 32 0.0007 29.5 10.3 97 15-117 27-129 (468)
214 PRK02862 glgC glucose-1-phosph 79.3 17 0.00037 30.7 8.6 109 14-127 28-149 (429)
215 PF02485 Branch: Core-2/I-Bran 79.2 8.3 0.00018 29.6 6.3 104 11-120 1-115 (244)
216 PF05045 RgpF: Rhamnan synthes 78.3 5.3 0.00011 34.4 5.3 79 42-128 1-87 (498)
217 PF05045 RgpF: Rhamnan synthes 77.8 46 0.001 28.8 15.3 94 7-106 263-362 (498)
218 PF11051 Mannosyl_trans3: Mann 76.2 26 0.00057 27.5 8.3 100 12-114 3-111 (271)
219 PRK00560 molybdopterin-guanine 74.8 32 0.00068 25.4 10.3 78 19-114 32-113 (196)
220 PF02364 Glucan_synthase: 1,3- 73.6 3.1 6.7E-05 37.6 2.7 200 9-213 190-434 (817)
221 KOG1467 Translation initiation 71.2 20 0.00043 30.5 6.6 85 14-112 362-446 (556)
222 PLN03193 beta-1,3-galactosyltr 70.5 63 0.0014 27.1 10.0 164 39-211 177-350 (408)
223 PLN02893 Cellulose synthase-li 67.2 16 0.00034 33.1 5.6 56 6-61 98-158 (734)
224 PF03314 DUF273: Protein of un 66.0 55 0.0012 24.7 8.6 37 91-131 40-78 (222)
225 KOG2791 N-acetylglucosaminyltr 61.0 58 0.0013 26.5 7.1 52 8-63 116-167 (455)
226 COG1083 NeuA CMP-N-acetylneura 60.7 72 0.0016 24.2 7.5 114 9-132 2-137 (228)
227 PRK15460 cpsB mannose-1-phosph 60.0 97 0.0021 26.8 8.9 97 15-117 32-136 (478)
228 PRK14500 putative bifunctional 59.9 97 0.0021 25.5 9.6 86 19-118 184-271 (346)
229 COG3967 DltE Short-chain dehyd 59.9 24 0.00052 26.6 4.6 51 12-69 31-81 (245)
230 PF13707 RloB: RloB-like prote 58.8 63 0.0014 23.4 6.9 35 93-127 61-96 (183)
231 PF03213 Pox_P35: Poxvirus P35 58.3 18 0.0004 28.8 4.0 38 92-129 118-156 (325)
232 PF13407 Peripla_BP_4: Peripla 58.1 76 0.0016 24.1 7.6 87 11-102 1-89 (257)
233 cd02537 GT8_Glycogenin Glycoge 58.0 83 0.0018 24.1 7.7 26 89-115 86-111 (240)
234 COG0041 PurE Phosphoribosylcar 57.1 68 0.0015 22.8 6.2 77 9-93 3-79 (162)
235 KOG3765 Predicted glycosyltran 56.2 18 0.00039 30.1 3.9 41 79-119 178-218 (386)
236 PRK13602 putative ribosomal pr 55.6 32 0.00069 21.5 4.1 52 24-80 16-67 (82)
237 PF09949 DUF2183: Uncharacteri 55.6 56 0.0012 21.3 6.0 40 24-67 51-91 (100)
238 PRK14359 glmU bifunctional N-a 53.8 1.3E+02 0.0029 25.2 11.1 169 21-210 30-211 (430)
239 KOG2977 Glycosyltransferase [G 53.5 1.7 3.8E-05 33.9 -2.1 78 39-117 41-122 (323)
240 PRK10674 deoxyribodipyrimidine 52.2 78 0.0017 27.2 7.3 68 22-91 53-120 (472)
241 TIGR02092 glgD glucose-1-phosp 52.0 43 0.00092 27.5 5.6 105 14-125 27-145 (369)
242 PLN00176 galactinol synthase 51.1 1E+02 0.0022 25.2 7.3 28 87-115 107-134 (333)
243 PLN02915 cellulose synthase A 50.4 60 0.0013 30.7 6.5 55 7-61 285-344 (1044)
244 PF02590 SPOUT_MTase: Predicte 49.9 92 0.002 22.2 8.5 31 92-122 66-97 (155)
245 PRK13601 putative L7Ae-like ri 49.7 39 0.00085 21.1 3.8 50 25-79 14-63 (82)
246 PRK06683 hypothetical protein; 48.7 43 0.00093 20.9 3.9 51 25-80 17-67 (82)
247 COG2452 Predicted site-specifi 48.7 66 0.0014 23.7 5.3 51 7-61 111-163 (193)
248 PLN02195 cellulose synthase A 48.4 49 0.0011 31.0 5.6 56 6-61 249-309 (977)
249 PHA02688 ORF059 IMV protein VP 47.7 28 0.00062 27.8 3.6 36 93-128 117-153 (323)
250 PF03808 Glyco_tran_WecB: Glyc 47.6 1.1E+02 0.0023 22.2 7.4 31 38-69 47-77 (172)
251 PLN02436 cellulose synthase A 47.5 57 0.0012 31.0 5.9 56 6-61 362-422 (1094)
252 PRK00103 rRNA large subunit me 47.4 1E+02 0.0022 22.0 10.3 98 10-129 2-107 (157)
253 PF09886 DUF2113: Uncharacteri 45.0 1.3E+02 0.0027 22.3 7.3 28 92-119 157-184 (188)
254 PLN02189 cellulose synthase 44.6 64 0.0014 30.6 5.7 55 7-61 329-388 (1040)
255 PLN02400 cellulose synthase 44.5 60 0.0013 30.9 5.6 56 6-61 353-413 (1085)
256 PRK01018 50S ribosomal protein 43.1 49 0.0011 21.5 3.7 37 25-65 22-58 (99)
257 PLN02638 cellulose synthase A 42.9 63 0.0014 30.7 5.5 56 6-61 346-406 (1079)
258 PF13905 Thioredoxin_8: Thiore 41.9 85 0.0018 19.5 8.1 72 27-104 22-94 (95)
259 COG1442 RfaJ Lipopolysaccharid 41.7 1.9E+02 0.0042 23.5 8.7 105 11-117 3-121 (325)
260 cd06430 GT8_like_2 GT8_like_2 41.2 1.9E+02 0.0041 23.3 12.6 105 11-118 3-121 (304)
261 PLN02248 cellulose synthase-li 40.9 73 0.0016 30.5 5.6 55 7-61 365-424 (1135)
262 COG0299 PurN Folate-dependent 40.8 1.5E+02 0.0033 22.1 8.2 15 19-33 9-23 (200)
263 COG0075 Serine-pyruvate aminot 40.8 2.2E+02 0.0047 23.9 9.4 34 168-202 202-235 (383)
264 PRK06455 riboflavin synthase; 40.4 56 0.0012 23.3 3.8 27 8-34 1-27 (155)
265 cd03008 TryX_like_RdCVF Trypar 40.3 1.3E+02 0.0028 21.2 7.6 71 39-115 65-135 (146)
266 COG0836 {ManC} Mannose-1-phosp 40.2 2E+02 0.0044 23.4 8.0 91 20-115 33-129 (333)
267 PF01990 ATP-synt_F: ATP synth 39.2 67 0.0014 20.5 3.9 53 20-75 26-78 (95)
268 cd08193 HVD 5-hydroxyvalerate 37.6 2.4E+02 0.0051 23.4 8.1 11 93-103 84-94 (376)
269 PF01008 IF-2B: Initiation fac 37.5 75 0.0016 25.0 4.7 43 18-62 114-156 (282)
270 PF01128 IspD: 2-C-methyl-D-er 37.0 1.9E+02 0.0041 22.0 9.3 91 19-119 26-119 (221)
271 PLN03183 acetylglucosaminyltra 36.1 2.7E+02 0.0059 23.7 10.1 95 7-104 76-185 (421)
272 PF01644 Chitin_synth_1: Chiti 35.9 94 0.002 22.4 4.4 49 69-117 111-163 (163)
273 COG1198 PriA Primosomal protei 35.3 42 0.00091 30.6 3.2 39 93-131 506-544 (730)
274 PF07492 Trehalase_Ca-bi: Neut 35.3 46 0.00099 16.3 1.9 22 29-50 2-24 (30)
275 PF01793 Glyco_transf_15: Glyc 35.2 71 0.0015 26.0 4.1 113 7-123 53-205 (328)
276 cd02968 SCO SCO (an acronym fo 35.0 1.4E+02 0.0031 20.1 5.9 36 39-75 59-94 (142)
277 PHA02518 ParA-like protein; Pr 34.8 89 0.0019 23.0 4.6 36 69-104 3-40 (211)
278 PTZ00210 UDP-GlcNAc-dependent 34.7 1E+02 0.0022 25.6 4.9 73 87-183 193-267 (382)
279 PF13344 Hydrolase_6: Haloacid 34.7 70 0.0015 20.7 3.5 34 25-62 20-53 (101)
280 PTZ00106 60S ribosomal protein 34.6 83 0.0018 20.9 3.8 36 26-65 32-67 (108)
281 PRK10037 cell division protein 34.5 79 0.0017 24.3 4.3 36 69-104 4-41 (250)
282 TIGR00511 ribulose_e2b2 ribose 34.0 1.8E+02 0.0039 23.4 6.3 53 17-73 121-173 (301)
283 PF10686 DUF2493: Protein of u 33.6 1.1E+02 0.0024 18.4 5.4 52 18-76 14-65 (71)
284 KOG1461 Translation initiation 33.3 3.4E+02 0.0074 24.4 8.0 104 6-117 43-149 (673)
285 PRK04017 hypothetical protein; 33.2 1.7E+02 0.0036 20.3 6.4 70 22-103 7-76 (132)
286 PRK13232 nifH nitrogenase redu 33.0 78 0.0017 24.7 4.1 36 69-105 4-41 (273)
287 PF00532 Peripla_BP_1: Peripla 33.0 2.4E+02 0.0052 22.1 7.4 54 9-63 2-55 (279)
288 PRK13233 nifH nitrogenase redu 32.6 83 0.0018 24.6 4.2 37 69-106 5-44 (275)
289 cd06429 GT8_like_1 GT8_like_1 31.9 2.5E+02 0.0054 21.9 6.9 23 93-116 114-136 (257)
290 PF04724 Glyco_transf_17: Glyc 31.4 3E+02 0.0066 22.8 7.8 22 92-113 178-199 (356)
291 PRK09860 putative alcohol dehy 31.0 3.1E+02 0.0068 22.8 8.0 15 92-106 88-102 (383)
292 cd08182 HEPD Hydroxyethylphosp 30.6 3.1E+02 0.0067 22.6 7.9 17 110-126 66-82 (367)
293 KOG1478 3-keto sterol reductas 30.4 2.8E+02 0.006 22.0 6.8 67 7-74 29-97 (341)
294 COG1107 Archaea-specific RecJ- 30.1 1.4E+02 0.0031 26.5 5.2 72 41-118 420-491 (715)
295 PRK08535 translation initiatio 29.9 2.1E+02 0.0045 23.1 6.1 52 18-73 127-178 (310)
296 KOG1460 GDP-mannose pyrophosph 29.9 2.9E+02 0.0062 22.4 6.5 102 22-127 36-141 (407)
297 cd08181 PPD-like 1,3-propanedi 29.8 2.4E+02 0.0051 23.2 6.5 13 93-105 84-96 (357)
298 COG1358 RPL8A Ribosomal protei 29.8 1.3E+02 0.0028 20.3 4.1 79 24-115 32-110 (116)
299 cd02117 NifH_like This family 29.2 1.2E+02 0.0026 22.5 4.5 36 69-105 3-40 (212)
300 KOG1971 Lysyl hydroxylase [Pos 29.2 1.2E+02 0.0026 25.5 4.5 65 50-119 137-202 (415)
301 PRK13235 nifH nitrogenase redu 29.2 1E+02 0.0022 24.1 4.2 37 69-106 4-42 (274)
302 PRK08195 4-hyroxy-2-oxovalerat 29.0 3.2E+02 0.007 22.3 8.1 93 20-119 142-243 (337)
303 cd02037 MRP-like MRP (Multiple 29.0 1.1E+02 0.0025 21.7 4.1 36 70-105 3-40 (169)
304 COG4224 Uncharacterized protei 28.4 1.5E+02 0.0032 18.2 3.9 40 25-64 34-73 (77)
305 TIGR03018 pepcterm_TyrKin exop 27.8 1.5E+02 0.0033 22.0 4.8 36 69-104 38-76 (207)
306 KOG1322 GDP-mannose pyrophosph 27.1 3.6E+02 0.0077 22.2 7.5 100 22-126 41-144 (371)
307 COG1671 Uncharacterized protei 26.6 2.4E+02 0.0052 20.0 7.0 30 43-74 4-33 (150)
308 COG4122 Predicted O-methyltran 26.6 1.8E+02 0.0039 22.1 4.9 30 90-119 128-158 (219)
309 cd06533 Glyco_transf_WecG_TagA 26.4 2.5E+02 0.0054 20.2 7.7 72 20-99 31-106 (171)
310 PRK01220 malonate decarboxylas 26.4 1.9E+02 0.0042 18.9 4.7 47 7-53 38-84 (99)
311 cd02032 Bchl_like This family 26.3 1.3E+02 0.0029 23.3 4.4 31 74-104 7-39 (267)
312 KOG1111 N-acetylglucosaminyltr 26.1 3.9E+02 0.0084 22.4 6.8 58 11-73 196-258 (426)
313 TIGR00140 hupD hydrogenase exp 25.9 2.2E+02 0.0047 19.4 5.3 17 85-101 28-44 (134)
314 cd08551 Fe-ADH iron-containing 25.9 3.8E+02 0.0082 22.1 8.2 9 94-102 82-90 (370)
315 PRK14476 nitrogenase molybdenu 25.7 2.2E+02 0.0049 24.4 5.9 106 17-126 73-200 (455)
316 PRK08769 DNA polymerase III su 25.4 2.3E+02 0.005 23.0 5.6 6 69-74 116-121 (319)
317 PRK13230 nitrogenase reductase 25.0 1.6E+02 0.0034 23.1 4.6 32 74-105 8-41 (279)
318 PRK05917 DNA polymerase III su 24.8 3.3E+02 0.0072 21.8 6.3 43 7-49 59-105 (290)
319 KOG1562 Spermidine synthase [A 24.6 1.1E+02 0.0023 24.7 3.4 113 65-180 120-249 (337)
320 TIGR01281 DPOR_bchL light-inde 24.5 1.5E+02 0.0032 23.0 4.4 32 74-105 7-40 (268)
321 PTZ00222 60S ribosomal protein 24.4 3.2E+02 0.0069 21.4 5.8 73 39-119 148-221 (263)
322 cd02042 ParA ParA and ParB of 24.4 1.9E+02 0.0042 18.3 4.7 34 71-104 4-39 (104)
323 PRK07714 hypothetical protein; 24.4 1.8E+02 0.0039 18.8 4.1 37 25-65 24-60 (100)
324 KOG3120 Predicted haloacid deh 24.2 1.5E+02 0.0033 22.7 4.0 35 22-59 87-121 (256)
325 PF05704 Caps_synth: Capsular 24.2 70 0.0015 25.3 2.4 26 21-48 60-85 (276)
326 PF05637 Glyco_transf_34: gala 24.0 76 0.0016 24.5 2.5 29 80-108 63-93 (239)
327 PRK07399 DNA polymerase III su 23.9 3.4E+02 0.0074 21.9 6.3 14 6-19 67-80 (314)
328 PF07879 PHB_acc_N: PHB/PHA ac 23.8 1.7E+02 0.0037 17.3 3.8 34 28-62 22-56 (64)
329 cd08185 Fe-ADH1 Iron-containin 23.8 4.2E+02 0.0092 21.9 8.3 10 93-102 84-93 (380)
330 KOG0799 Branching enzyme [Carb 23.7 4.4E+02 0.0096 22.6 7.1 103 10-117 104-218 (439)
331 PRK13849 putative crown gall t 23.5 1.6E+02 0.0035 22.5 4.2 36 69-104 4-41 (231)
332 TIGR03217 4OH_2_O_val_ald 4-hy 23.4 4.1E+02 0.009 21.7 8.1 93 20-119 141-242 (333)
333 TIGR03371 cellulose_yhjQ cellu 23.4 1.8E+02 0.004 22.0 4.6 36 69-104 4-41 (246)
334 PRK09287 6-phosphogluconate de 23.4 4E+02 0.0086 23.0 6.9 92 9-118 55-148 (459)
335 PF13419 HAD_2: Haloacid dehal 22.8 2.7E+02 0.0058 19.2 5.2 76 22-102 80-159 (176)
336 PLN02690 Agmatine deiminase 22.7 1.5E+02 0.0032 24.7 4.1 34 12-47 319-352 (374)
337 PRK13185 chlL protochlorophyll 22.6 1.7E+02 0.0037 22.7 4.4 35 69-104 5-41 (270)
338 TIGR00696 wecB_tagA_cpsF bacte 22.5 3.1E+02 0.0068 20.0 7.5 31 38-70 47-78 (177)
339 PRK13236 nitrogenase reductase 22.5 1.8E+02 0.0039 23.1 4.5 33 73-105 12-46 (296)
340 PF06857 ACP: Malonate decarbo 22.4 2.2E+02 0.0047 18.1 3.9 47 9-55 26-75 (87)
341 PF04028 DUF374: Domain of unk 22.0 2E+02 0.0044 17.5 6.3 59 40-103 10-68 (74)
342 KOG0385 Chromatin remodeling c 21.9 3.5E+02 0.0075 25.2 6.2 84 25-117 497-582 (971)
343 COG0804 UreC Urea amidohydrola 21.8 5.1E+02 0.011 22.1 8.7 91 20-118 174-265 (568)
344 TIGR00246 tRNA_RlmH_YbeA rRNA 21.7 3.1E+02 0.0066 19.5 8.6 29 93-121 65-94 (153)
345 cd01966 Nitrogenase_NifN_1 Nit 21.5 3E+02 0.0066 23.2 5.8 106 17-126 62-189 (417)
346 cd02036 MinD Bacterial cell di 21.4 2.3E+02 0.005 20.0 4.6 31 73-103 6-38 (179)
347 cd02974 AhpF_NTD_N Alkyl hydro 21.1 2.4E+02 0.0052 18.1 7.0 47 24-73 6-54 (94)
348 COG4750 LicC CTP:phosphocholin 21.1 3.7E+02 0.008 20.2 6.2 80 19-110 29-110 (231)
349 PRK13234 nifH nitrogenase redu 21.0 2E+02 0.0042 22.9 4.4 31 74-104 11-43 (295)
350 PF00682 HMGL-like: HMGL-like 21.0 3.8E+02 0.0081 20.3 6.7 42 53-95 168-209 (237)
351 COG1454 EutG Alcohol dehydroge 20.9 5E+02 0.011 21.7 8.2 34 94-127 59-92 (377)
352 COG1184 GCD2 Translation initi 20.8 4.5E+02 0.0097 21.3 6.2 17 84-100 162-178 (301)
353 cd02040 NifH NifH gene encodes 20.8 1.9E+02 0.0042 22.3 4.4 36 69-105 4-41 (270)
354 TIGR01285 nifN nitrogenase mol 20.8 3.3E+02 0.0071 23.2 5.9 104 18-125 73-198 (432)
355 TIGR01283 nifE nitrogenase mol 20.5 4.3E+02 0.0093 22.6 6.6 56 18-77 103-163 (456)
356 COG3306 Glycosyltransferase in 20.5 1.8E+02 0.0039 22.8 3.9 43 76-118 67-112 (255)
357 cd08183 Fe-ADH2 Iron-containin 20.3 4.2E+02 0.0091 21.9 6.4 12 93-104 76-87 (374)
358 TIGR03029 EpsG chain length de 20.3 2.4E+02 0.0053 21.9 4.8 37 69-105 106-144 (274)
359 PF13506 Glyco_transf_21: Glyc 20.2 3.2E+02 0.0069 19.7 5.1 36 38-73 30-65 (175)
360 TIGR03815 CpaE_hom_Actino heli 20.2 4.3E+02 0.0092 21.2 6.3 37 68-104 95-133 (322)
361 TIGR00595 priA primosomal prot 20.1 1.7E+02 0.0037 25.5 4.1 40 93-132 284-323 (505)
362 KOG3878 Protein involved in ma 20.0 45 0.00098 26.8 0.6 18 4-21 410-427 (469)
363 PF04371 PAD_porph: Porphyromo 20.0 2.1E+02 0.0045 23.3 4.4 32 12-46 279-310 (329)
No 1
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=100.00 E-value=1.9e-41 Score=260.81 Aligned_cols=240 Identities=86% Similarity=1.334 Sum_probs=208.4
Q ss_pred CccccCCCCcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc
Q 026146 1 MEETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG 79 (242)
Q Consensus 1 m~~~~~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g 79 (242)
|.+....+|++|||||+||+++.|+.+++++.++... .++|||||||||+|+|.++++++.+.++...+.++..++|.|
T Consensus 1 ~~~~~~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G 80 (243)
T PLN02726 1 MEAPGEGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLG 80 (243)
T ss_pred CCCCCCCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCC
Confidence 4555566789999999999999999999999776543 478999999999999999999998877656788888888999
Q ss_pred hHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhC
Q 026146 80 LGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLW 159 (242)
Q Consensus 80 ~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (242)
++.|+|.|++.|+++|++|+|+|+.++|++++++++.+.+++.+++.|.+.....+..++.+.+.+.....+.+.....+
T Consensus 81 ~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 160 (243)
T PLN02726 81 LGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLLW 160 (243)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999998878899999987765544344555566666666666666677
Q ss_pred CCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccchHHHHHHHHHHHHHh
Q 026146 160 PGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLYLL 239 (242)
Q Consensus 160 ~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 239 (242)
.++.+..|+++++||+++++++.+.+..+|.+|+|+++++.+.|+++.++|..+.+|.+|.|+.+..+++++.+.+..+.
T Consensus 161 ~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s~~~~~~~~~~~~~~~~~~ 240 (243)
T PLN02726 161 PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGESKLGGSEIVQYLKGLLYLL 240 (243)
T ss_pred CCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcccCCHHHHHHHHHHHHHHe
Confidence 78888999999999999999987777778888999999999999999999999999999999999999999999888776
Q ss_pred h
Q 026146 240 I 240 (242)
Q Consensus 240 ~ 240 (242)
.
T Consensus 241 ~ 241 (243)
T PLN02726 241 L 241 (243)
T ss_pred e
Confidence 4
No 2
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=225.71 Aligned_cols=234 Identities=67% Similarity=1.095 Sum_probs=216.4
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYI 85 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n 85 (242)
.++.|||+||||+.++|+-++.-+...... .++|||||||+|.|+|.+.++++++.+...++.+..+....|.+.|.-
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~ 81 (238)
T KOG2978|consen 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLGTAYI 81 (238)
T ss_pred CcceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccchHHHH
Confidence 468999999999999998655555544443 689999999999999999999999999888999999999999999999
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCcccc
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDL 165 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (242)
.|+++|+|+|++++|+|..-+|.++.++++...+++.|++.|+++..+.+..+|++.++..++..+.+.+.+.++++++.
T Consensus 82 hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~ll~~~~sdl 161 (238)
T KOG2978|consen 82 HGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARILLNPGVSDL 161 (238)
T ss_pred hhhhhccCCeEEEEeCccCCCchhHHHHHHHhhccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHhccCCCccC
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred ccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccchHHHHHHHHHHHHHhhc
Q 026146 166 TGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLYLLIT 241 (242)
Q Consensus 166 ~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 241 (242)
+|++.++++++++.+-......+|...+|+..++.+.|+.|..||.+.+.|.+|+|+.+......|.++++.+|.-
T Consensus 162 tGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~GeSKLg~~eIv~ylk~l~~Lf~~ 237 (238)
T KOG2978|consen 162 TGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYGESKLGGKEIVQYLKGLLYLFAF 237 (238)
T ss_pred cceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeeccccccccHHHHHHHHHHHhhheee
Confidence 9999999999999986555688888899999999999999999999999999999999999999999999988753
No 3
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=100.00 E-value=1.4e-36 Score=231.12 Aligned_cols=223 Identities=61% Similarity=0.963 Sum_probs=188.4
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
||||+||+++.|..+|+++.+|.....+|||||||||+|+|.++++++.+.++ .+.++..+.|.|++.|+|.|++.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~n~g~~~a~ 78 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYIEGFKAAR 78 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHHHHHHHHcC
Confidence 69999999999999999999997545799999999999999999999887765 6788888899999999999999999
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLY 172 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 172 (242)
+||++|+|+|+.++|++++.+++.+.+++.++++|.+.........+.+.+.................++.+..|+++++
T Consensus 79 gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (224)
T cd06442 79 GDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLLGRKVSDPTSGFRAY 158 (224)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCccchh
Confidence 99999999999999999999999977778899999877665544455555555544444444444566777888999999
Q ss_pred chHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccchHHHHHHHHHHHH
Q 026146 173 KKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLLY 237 (242)
Q Consensus 173 rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~ 237 (242)
||++++++|......++.+|++++.++.+.|+++.++|...+.|..|.|+.+..+++++.+..+.
T Consensus 159 ~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~~~~~~~~~~~~~~~ 223 (224)
T cd06442 159 RREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKLGGKEIVEYLKGLLR 223 (224)
T ss_pred hHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCceeHHHHHHHHHHHhh
Confidence 99999999833345677778999999999999999999999999999999999888888776654
No 4
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=1.5e-35 Score=220.92 Aligned_cols=188 Identities=20% Similarity=0.194 Sum_probs=156.2
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc---hHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG---LGTAYI 85 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g---~~~a~n 85 (242)
|.+|||||+||+++.+.++|+++.+|.+ +++|||||||+|+|+|.++++++.+.++..+++++....+.| ++.++|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~-~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n 79 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDY-PKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLI 79 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccC-CCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHH
Confidence 5799999999999999999999999865 569999999999999999999998887755677776665544 456788
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCcccc
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDL 165 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (242)
.|++.+++||++|+|+|+.++|+||+.+++.+.+++.+++.|. ..
T Consensus 80 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~-----------------------------------~~ 124 (196)
T cd02520 80 KGYEEARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL-----------------------------------CA 124 (196)
T ss_pred HHHHhCCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee-----------------------------------cc
Confidence 9999999999999999999999999999999876678887765 35
Q ss_pred ccchhhcchHHHHHhhhcccC-CCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHH
Q 026146 166 TGSFRLYKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYL 232 (242)
Q Consensus 166 ~g~~~~~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~ 232 (242)
.|+++++||++++++|++... ..+.||++|+.++.+.|+++.++|...+++..+.+...+ ++..||.
T Consensus 125 ~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~ 193 (196)
T cd02520 125 FGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWS 193 (196)
T ss_pred cCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHh
Confidence 577889999999999988653 345799999999999999999999988776554443222 4444443
No 5
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=100.00 E-value=5.2e-34 Score=227.34 Aligned_cols=232 Identities=24% Similarity=0.356 Sum_probs=194.6
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhc-------CCCeEEEEEeCCCCCChHHHHHHHHHHh--CCCcEEEeeCCCC
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLR-------DVDFEIIVVDDGSPDGTQEVVKQLQQLY--GEDRILLRPRPKK 77 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~-------~~~~eiivvd~~s~d~t~~~l~~~~~~~--~~~~~~~~~~~~~ 77 (242)
..+.+|||||+||+++.|+.+++++.++.. ..++|||||||||+|+|.++++++.+.+ +...++++..+.|
T Consensus 68 ~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~N 147 (333)
T PTZ00260 68 SDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLRN 147 (333)
T ss_pred CCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCCC
Confidence 467899999999999999999999987643 2378999999999999999999988764 3346999999999
Q ss_pred cchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh---cCCcEEEEEEEeecCC--ccCchhhHHHHHhHHHH
Q 026146 78 LGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE---TGASIVTGTRYVRSGG--VHGWNLMRKLTSRGANV 152 (242)
Q Consensus 78 ~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~---~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 152 (242)
.|+++|+|.|++.|+|||++++|+|...+++.+.++++.+.+ ++.++|+|++.....+ ....++.+.+.....+.
T Consensus 148 ~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~~~~~ 227 (333)
T PTZ00260 148 KGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMYGFHF 227 (333)
T ss_pred CChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 6789999988754322 34556777888888888
Q ss_pred HHHHHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHH
Q 026146 153 LAQTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEY 231 (242)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~ 231 (242)
+.....+..+.+.++++.+++|++++.+.......+|..|.|+..++.+.|+++..+|+.+..+ +.|+++ .+...++
T Consensus 228 l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~~~~--~~Sk~~~~~~~~~~ 305 (333)
T PTZ00260 228 IVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNWTEV--EGSKLNVISASIQM 305 (333)
T ss_pred HHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceeeEEC--CCCeechHHHHHHH
Confidence 8888888899999999999999999998444445677889999999999999999999987554 457666 4667777
Q ss_pred HHHHHHHhh
Q 026146 232 LKGLLYLLI 240 (242)
Q Consensus 232 ~~~~~~~~~ 240 (242)
.+.++++++
T Consensus 306 ~~~l~~~~~ 314 (333)
T PTZ00260 306 ARDILLVRS 314 (333)
T ss_pred HHHHHHHHH
Confidence 777776654
No 6
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=100.00 E-value=1.9e-34 Score=221.75 Aligned_cols=226 Identities=15% Similarity=0.171 Sum_probs=164.4
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHG 87 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g 87 (242)
|.+|||||+||+++.|.++|+|+.+|.++ ..+|||||||+|+|+|.++++++... +...+.++....+.|++.|+|.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~~a~n~g 79 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKPKACNYA 79 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchHHHHHHH
Confidence 67999999999999999999999998765 35899999999999999999887432 12356666666788999999999
Q ss_pred HhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEE--EEEEEeecCCccCchhhHHHHH----hHHHHHHHHHhCCC
Q 026146 88 LKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIV--TGTRYVRSGGVHGWNLMRKLTS----RGANVLAQTLLWPG 161 (242)
Q Consensus 88 ~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 161 (242)
++.++||||+|+|+|+.++|+++.++++.+.+.+.+++ .+.....+.. ..+...... .............+
T Consensus 80 ~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (241)
T cd06427 80 LAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNAR---ENWLTRMFALEYAAWFDYLLPGLARLG 156 (241)
T ss_pred HHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCC---ccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999875434443 3332222211 111111111 11111111111122
Q ss_pred -ccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCccc-chHHHHHHHHHHHHHh
Q 026146 162 -VSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKL-GGSEIVEYLKGLLYLL 239 (242)
Q Consensus 162 -~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~ 239 (242)
.....|+++++||++++++|++.+ ..+.||.+++.|+.+.|+++.++|.....+ .+.+.. -.++..||.++.++++
T Consensus 157 ~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~eD~~l~~rl~~~G~r~~~~~~~~~~~-~~~~~~~~~~q~~Rw~~g~~~~~ 234 (241)
T cd06427 157 LPIPLGGTSNHFRTDVLRELGGWDP-FNVTEDADLGLRLARAGYRTGVLNSTTLEE-ANNALGNWIRQRSRWIKGYMQTW 234 (241)
T ss_pred CeeecCCchHHhhHHHHHHcCCCCc-ccchhhHHHHHHHHHCCceEEEeccccccc-CcHhHHHHHHHHHHHhccHHHHH
Confidence 223467778999999999999865 467899999999999999999998755432 233322 3477888888888876
Q ss_pred h
Q 026146 240 I 240 (242)
Q Consensus 240 ~ 240 (242)
.
T Consensus 235 ~ 235 (241)
T cd06427 235 L 235 (241)
T ss_pred H
Confidence 4
No 7
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=100.00 E-value=2.9e-34 Score=216.50 Aligned_cols=204 Identities=31% Similarity=0.486 Sum_probs=174.6
Q ss_pred EEEeCccccccHHHHHHHHHhhhcC---CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHh
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRD---VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLK 89 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~---~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~ 89 (242)
||||+||+++.|.++|+++.+|... ..+|||||||||+|+|.++++++.+.++. .++++..+.|.|+++|+|.|++
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~~g~~ 79 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVRAGML 79 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHHHHHH
Confidence 6999999999999999999998642 57999999999999999999999887663 3688888889999999999999
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCc-cCchhhHHHHHhHHHHHHHHHhCCCccccccc
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGV-HGWNLMRKLTSRGANVLAQTLLWPGVSDLTGS 168 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (242)
.|++|||+++|+|+.++++++.++++.+.+++.++++|.+.....+. ...++.+.........+.....+..+.+..++
T Consensus 80 ~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~g 159 (211)
T cd04188 80 AARGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIKDTQCG 159 (211)
T ss_pred HhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCcccccC
Confidence 99999999999999999999999999977778999999888754432 33455566666666666666667777777778
Q ss_pred hhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeecc
Q 026146 169 FRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRV 217 (242)
Q Consensus 169 ~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~ 217 (242)
..+++|++++++++......|.+|.|++.++.+.|+++.++|+.+.+|.
T Consensus 160 ~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~ 208 (211)
T cd04188 160 FKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIP 208 (211)
T ss_pred ceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCC
Confidence 8899999999997666677888999999999999999999998887765
No 8
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=3.5e-34 Score=219.13 Aligned_cols=219 Identities=19% Similarity=0.228 Sum_probs=161.0
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhC--CCcEEEeeCCCCcc-hHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYG--EDRILLRPRPKKLG-LGTAY 84 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~--~~~~~~~~~~~~~g-~~~a~ 84 (242)
|+||||||+||+++.|.++|+++.+|.++ ..+||||+|| |+|+|.++++++...++ ..++.++...++.| ++.|+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 57999999999999999999999998765 3579999998 99999999998766542 34677777666667 68899
Q ss_pred HHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH--H-HHH--HHhC
Q 026146 85 IHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN--V-LAQ--TLLW 159 (242)
Q Consensus 85 n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--~~~~ 159 (242)
|.|++.++++||+|+|+|+.++|++|+++...+..++++++.+.....+.. ..+.......... . ... ....
T Consensus 80 n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (232)
T cd06437 80 AEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINAN---YSLLTRVQAMSLDYHFTIEQVARSST 156 (232)
T ss_pred HHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCC---CchhhHhhhhhHHhhhhHhHhhHhhc
Confidence 999999999999999999999999999987777655666676654433321 1122111111111 0 000 1111
Q ss_pred CCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHH
Q 026146 160 PGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYL 232 (242)
Q Consensus 160 ~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~ 232 (242)
.....+.|+++++||++++++|++.+ ..+.||++++.|+...|+++.++|.+.+++..+.+-..+ .+..||.
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg~~~-~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~ 229 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGGWNH-DTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWS 229 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCCCCC-CcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhc
Confidence 22334567777899999999999865 457899999999999999999999988887766554443 4444443
No 9
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=100.00 E-value=2.5e-34 Score=227.73 Aligned_cols=208 Identities=19% Similarity=0.153 Sum_probs=154.6
Q ss_pred EEEEeCcccc-ccHHHHHHHHHhhhcCC-CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHh
Q 026146 12 SIIIPTYNER-LNIALIVYLIFKHLRDV-DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLK 89 (242)
Q Consensus 12 siiip~~n~~-~~l~~~l~sl~~~~~~~-~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~ 89 (242)
|||||+||+. +.|.+||+|+.+|+... .+|||||||||+|+|.+++.+.......+.++++..+.|.|.+.|+|.|++
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~ 80 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGAR 80 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 6999999999 99999999999887643 469999999999999998876322212247999999999999999999999
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCc-------------cCchhhHHHHHhHHHH--HH
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGV-------------HGWNLMRKLTSRGANV--LA 154 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~--~~ 154 (242)
.|+||||+|||+|+.++++||+.+++.+.+++..++.+......... ..+.+........... ..
T Consensus 81 ~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (299)
T cd02510 81 AATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRE 160 (299)
T ss_pred HccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhc
Confidence 99999999999999999999999999998766665554322111100 0000000000000000 00
Q ss_pred HHHhCCCccccccchhhcchHHHHHhhhcccCCCc--ccchHHHHHHHHcCCceEEeeeeeeeccCC
Q 026146 155 QTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGY--VFQMEMIVRACRKGYHIEEVPITFVDRVFG 219 (242)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~--~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~ 219 (242)
.......+....|+|+++||++|+++|+|++.+.. .||.|||+|+++.|+++.++|.+.+.|.++
T Consensus 161 ~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 161 SPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 00012235567899999999999999999875543 599999999999999999999887777655
No 10
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=1.1e-33 Score=234.00 Aligned_cols=225 Identities=20% Similarity=0.295 Sum_probs=173.7
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
..|++||+||+||+++.+.++++++.+|.+ +++||+||||||+|+|.+.++++.++++ ++++++.++|.|++.|+|.
T Consensus 52 ~~p~vsViIp~yne~~~i~~~l~sl~~q~y-p~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~Gka~aln~ 128 (420)
T PRK11204 52 EYPGVSILVPCYNEGENVEETISHLLALRY-PNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQGKANALNT 128 (420)
T ss_pred CCCCEEEEEecCCCHHHHHHHHHHHHhCCC-CCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCCCHHHHHHH
Confidence 457899999999999999999999999865 5899999999999999999999988765 6889998889999999999
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhhHHHH----HhHHHHHHHH-HhCC
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLMRKLT----SRGANVLAQT-LLWP 160 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~ 160 (242)
|++.+++||++++|+|+.++|++++++++.+++ ++.+++.|.....+.. .+..... .......... ....
T Consensus 129 g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (420)
T PRK11204 129 GAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRS----TLLGRIQVGEFSSIIGLIKRAQRVYG 204 (420)
T ss_pred HHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccch----hHHHHHHHHHHHHhhhHHHHHHHHhC
Confidence 999999999999999999999999999999964 4566676654443322 1111111 0000111111 1112
Q ss_pred CccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHHHHHHHh
Q 026146 161 GVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLKGLLYLL 239 (242)
Q Consensus 161 ~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~ 239 (242)
.+....|+++++||++++++|++++. ...||.+++.++.++|+++.++|.+..++..+++-.. .++..||.++.++.+
T Consensus 205 ~~~~~~G~~~~~rr~~l~~vgg~~~~-~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G~~~~l 283 (420)
T PRK11204 205 RVFTVSGVITAFRKSALHEVGYWSTD-MITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQGGAEVL 283 (420)
T ss_pred CceEecceeeeeeHHHHHHhCCCCCC-cccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcCHHHHH
Confidence 34456788889999999999988654 4689999999999999999999998887766655433 366777776665543
No 11
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=5.4e-33 Score=212.72 Aligned_cols=222 Identities=18% Similarity=0.209 Sum_probs=161.5
Q ss_pred CcEEEEEeCcccc-ccHHHHHHHHHhhhcCC-CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc-hHHHHH
Q 026146 9 NKYSIIIPTYNER-LNIALIVYLIFKHLRDV-DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG-LGTAYI 85 (242)
Q Consensus 9 ~~isiiip~~n~~-~~l~~~l~sl~~~~~~~-~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g-~~~a~n 85 (242)
|+||||||+||++ +.++++|+|+.+|..+. .+|||||||+|+|+|.++++++...+ .+.++..+.|.| +++++|
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~n 77 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNRHAKAGNLN 77 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCCCCcHHHHH
Confidence 5799999999976 67899999999997642 28999999999999999999886543 355555555554 688899
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhhHHHHH---hHHHHHHHHHhCCC
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLMRKLTS---RGANVLAQTLLWPG 161 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 161 (242)
.|++.+++||++|+|+|+.++|++++.++..+.+ ++.+++.+........... ........ .............+
T Consensus 78 ~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (234)
T cd06421 78 NALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFD-WLADGAPNEQELFYGVIQPGRDRWG 156 (234)
T ss_pred HHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcch-hHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999987 5666776655443332111 11111111 11111111111123
Q ss_pred ccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHHHH
Q 026146 162 VSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLKGL 235 (242)
Q Consensus 162 ~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~ 235 (242)
.....|+++++||++++++|++.+ ..++||++++.++.+.|+++.++|.+..++....+... .++..+|.++.
T Consensus 157 ~~~~~g~~~~~r~~~~~~ig~~~~-~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~ 230 (234)
T cd06421 157 AAFCCGSGAVVRREALDEIGGFPT-DSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGM 230 (234)
T ss_pred CceecCceeeEeHHHHHHhCCCCc-cceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCC
Confidence 455678888999999999998864 45689999999999999999999988877665554332 35555555443
No 12
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=1.1e-32 Score=228.72 Aligned_cols=228 Identities=18% Similarity=0.200 Sum_probs=171.5
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
..|.+||+||+||++..+.++++++.+|.+ +++||+||||||+|+|.+.++++.++++ ++++++.++|.|++.|+|.
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~q~y-p~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~Gka~AlN~ 149 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALAQTY-TNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQGKAIALRM 149 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHcCCC-CCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCCHHHHHHH
Confidence 357899999999999999999999999966 5799999999999999999999888765 6888888889999999999
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHH-HhCCCccc
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQT-LLWPGVSD 164 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 164 (242)
|++.+++||++++|+|+.++|+++.++++.+.+ ++.+++.|.....+....................... .....+..
T Consensus 150 gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~ 229 (444)
T PRK14583 150 GAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFT 229 (444)
T ss_pred HHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 999999999999999999999999999998864 4566666654443322110000000011111111111 11123445
Q ss_pred cccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHHHHHHH
Q 026146 165 LTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLKGLLYL 238 (242)
Q Consensus 165 ~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~~~~~~ 238 (242)
.+|+++++||++++++|++.+. ...||.|++.++.++|+++.++|.+..+...+++-... ++..||.++..+.
T Consensus 230 ~sG~~~~~rr~al~~vGg~~~~-~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~~~~ 303 (444)
T PRK14583 230 VSGVVAAFRRRALADVGYWSPD-MITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGGAEV 303 (444)
T ss_pred ecCceeEEEHHHHHHcCCCCCC-cccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcHHHH
Confidence 6688889999999999988654 46899999999999999999999888776655554433 6667776554433
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=1.7e-32 Score=222.89 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=166.3
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc---hHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG---LGT 82 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g---~~~ 82 (242)
...|.||||||+||+++.++++|+|+.+|.+ +++||||+||+|+|.|.++++++.+.+|..+++++..+++.| +..
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Y-p~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~ 116 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDY-PGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGPNRKVS 116 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCC-CCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCCChHHH
Confidence 3468899999999999999999999999976 569999999999999999999999988877788887665555 566
Q ss_pred HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHH--HHHH----HH
Q 026146 83 AYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGA--NVLA----QT 156 (242)
Q Consensus 83 a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~ 156 (242)
+.+.+++.|++||++|+|+|+.++|++|++++..+++++.+++.+....... ..+......... .... ..
T Consensus 117 ~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~ 192 (373)
T TIGR03472 117 NLINMLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPV----PGFWSRLGAMGINHNFLPSVMVAR 192 (373)
T ss_pred HHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCC----CCHHHHHHHHHhhhhhhHHHHHHH
Confidence 7777899999999999999999999999999999977778888774322111 122222211110 0111 11
Q ss_pred HhCCCccccccchhhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHHH
Q 026146 157 LLWPGVSDLTGSFRLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLKG 234 (242)
Q Consensus 157 ~~~~~~~~~~g~~~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~~ 234 (242)
..+ ......|+++++||++++++||+.+ .....||++++.++.+.|+++.+.|....++....+-... ++..||.+.
T Consensus 193 ~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW~r~ 271 (373)
T TIGR03472 193 ALG-RARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRWSRT 271 (373)
T ss_pred hcc-CCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHHHhh
Confidence 111 1233568889999999999999975 3456899999999999999999999776665543332222 444445443
Q ss_pred H
Q 026146 235 L 235 (242)
Q Consensus 235 ~ 235 (242)
.
T Consensus 272 ~ 272 (373)
T TIGR03472 272 I 272 (373)
T ss_pred h
Confidence 3
No 14
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=100.00 E-value=2.7e-34 Score=219.16 Aligned_cols=222 Identities=23% Similarity=0.296 Sum_probs=144.8
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc---hHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG---LGTAYI 85 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g---~~~a~n 85 (242)
|+|+||||+||+.+.+.++|+++.+|.. +.++|+||||++++++.+.++++.+.++...++++..+.+.| ++.++|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~-~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n 79 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDY-PRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALN 79 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHH-HTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCC-CCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHH
Confidence 6799999999999999999999999876 689999999999999999999998888855788888776665 789999
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHH-HhHHHHHHHHHhCCCccc
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLT-SRGANVLAQTLLWPGVSD 164 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (242)
.|++.+++||++|+|+|+.++|++|..+++.+.+++++++.+.....+.. .......... ..............+...
T Consensus 80 ~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (228)
T PF13641_consen 80 EALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR-NWLTRLQDLFFARWHLRFRSGRRALGVAF 158 (228)
T ss_dssp HHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC-CEEEE-TT--S-EETTTS-TT-B----S-
T ss_pred HHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC-CHHHHHHHHHHhhhhhhhhhhhcccceee
Confidence 99999999999999999999999999999999767888888777554322 1111111100 000000000011122344
Q ss_pred cccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHH
Q 026146 165 LTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLK 233 (242)
Q Consensus 165 ~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~ 233 (242)
+.|+++++||++++++|++++ ...+||.+++.++.++|+++.++|...++|..+.+-..+ ++..||.+
T Consensus 159 ~~G~~~~~rr~~~~~~g~fd~-~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~~ 227 (228)
T PF13641_consen 159 LSGSGMLFRRSALEEVGGFDP-FILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWSR 227 (228)
T ss_dssp B--TEEEEEHHHHHHH-S--S-SSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH-
T ss_pred ccCcEEEEEHHHHHHhCCCCC-CCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccCc
Confidence 568888999999999999877 677799999999999999999999998888766554332 44555543
No 15
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=6.4e-32 Score=223.52 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=168.9
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCC-CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDV-DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~-~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~ 84 (242)
...|++|||||+||+++.+.++++++.+|.++. .+|||||||||+|+|.++++++.+.++ .+.++..+.+.|++.|+
T Consensus 46 ~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~~Gka~Al 123 (439)
T TIGR03111 46 GKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSDQGKAKAL 123 (439)
T ss_pred CCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCCCCHHHHH
Confidence 346899999999999999999999999997763 479999999999999999999888766 56665556678999999
Q ss_pred HHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhc-CCcEEEEEEEeecCCc--cCchhhHHHHH-hHHHHHHHHH---
Q 026146 85 IHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLET-GASIVTGTRYVRSGGV--HGWNLMRKLTS-RGANVLAQTL--- 157 (242)
Q Consensus 85 n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~--- 157 (242)
|.|++.+++||++++|+|+.++|++++++++.++++ +.+++.|......+.. ....+...... ...+......
T Consensus 124 N~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r 203 (439)
T TIGR03111 124 NAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLAGR 203 (439)
T ss_pred HHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999753 4555555544322110 00000000000 0011111001
Q ss_pred ----hCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHH-HcCCceEEeeeeeeeccCCCccc-chHHHHHH
Q 026146 158 ----LWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRAC-RKGYHIEEVPITFVDRVFGSSKL-GGSEIVEY 231 (242)
Q Consensus 158 ----~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~-~~g~~i~~~p~~~~~~~~~~s~~-~~~~~~~~ 231 (242)
....+...+|+++++||++++++|++++. ..+||.+++.++. ..|+++.++|.+..++..+.+-. ..++..||
T Consensus 204 ~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~-~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~~~QR~RW 282 (439)
T TIGR03111 204 NFESQVNSLFTLSGAFSAFRRETILKTQLYNSE-TVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKLYTQRQRW 282 (439)
T ss_pred HHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCC-CcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHHHHHHHHH
Confidence 11234456788889999999999988654 4699999999996 46999999998888776544332 34666777
Q ss_pred HHHHHHHh
Q 026146 232 LKGLLYLL 239 (242)
Q Consensus 232 ~~~~~~~~ 239 (242)
.++.++.+
T Consensus 283 ~rG~~qv~ 290 (439)
T TIGR03111 283 QRGELEVS 290 (439)
T ss_pred hccHHHHH
Confidence 66665543
No 16
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=100.00 E-value=9e-32 Score=204.03 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=148.2
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee----CCCCcchHHHHHHHH
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP----RPKKLGLGTAYIHGL 88 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~----~~~~~g~~~a~n~g~ 88 (242)
||||+||+++.|++||+||.+|+.+..+|||||||||+|+|.++++++.+.++..+++++. .+.+.|.+.|+|.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~ 80 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAI 80 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHH
Confidence 6899999999999999999999764469999999999999999999988776555666654 345679999999999
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH-HHHHHHhCCCcccccc
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN-VLAQTLLWPGVSDLTG 167 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 167 (242)
+.|+|||++|+|+|+.++|+++++++..+.+++..++ +.............+.......... .........+. ....
T Consensus 81 ~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (219)
T cd06913 81 AQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSII-GCQVRRIPEDSTERYTRWINTLTREQLLTQVYTSHGP-TVIM 158 (219)
T ss_pred HhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEE-EEEEEecCcccchhhHHHHHhcCHHHHHHHHHhhcCC-cccc
Confidence 9999999999999999999999999988876554444 4443322211111111111111011 11111111111 1222
Q ss_pred chhhcchHHHHHhhhcccC-CCcccchHHHHHHHHcCCceEEeeeeee-eccCCCc
Q 026146 168 SFRLYKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHIEEVPITFV-DRVFGSS 221 (242)
Q Consensus 168 ~~~~~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i~~~p~~~~-~~~~~~s 221 (242)
..+++||++++++|++.+. ..+.||++|+.|+.+.|.++.++|...+ +|.++.|
T Consensus 159 ~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~yr~~~~s 214 (219)
T cd06913 159 PTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLLYRYHPGA 214 (219)
T ss_pred ccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceeeeeeecCCC
Confidence 2347999999999998764 4567999999999999999999997654 4444444
No 17
>PRK10073 putative glycosyl transferase; Provisional
Probab=100.00 E-value=1.2e-31 Score=213.62 Aligned_cols=213 Identities=19% Similarity=0.238 Sum_probs=157.9
Q ss_pred cCCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHH
Q 026146 5 NKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 5 ~~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~ 84 (242)
+.++|.||||||+||.++.|.+||+|+.+|+. .++|||||||||+|+|.++++++.+.++ ++++++. +|.|.+.|+
T Consensus 2 ~~~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~-~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~-~n~G~~~ar 77 (328)
T PRK10073 2 MNSTPKLSIIIPLYNAGKDFRAFMESLIAQTW-TALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQ-ANAGVSVAR 77 (328)
T ss_pred CCCCCeEEEEEeccCCHHHHHHHHHHHHhCCC-CCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEC-CCCChHHHH
Confidence 34568999999999999999999999999976 5899999999999999999999988765 7888875 599999999
Q ss_pred HHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEee-cCCccCchhh--HHHHH----hHHHHHHHHH
Q 026146 85 IHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVR-SGGVHGWNLM--RKLTS----RGANVLAQTL 157 (242)
Q Consensus 85 n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~--~~~~~----~~~~~~~~~~ 157 (242)
|.|++.|+|+||+|+|+|+.+.|++++.+++.+++++.+++.+..... ..+....... ..... ....++...+
T Consensus 78 N~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 157 (328)
T PRK10073 78 NTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLRMAL 157 (328)
T ss_pred HHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCCccccccccccccccceechHHHHHHHH
Confidence 999999999999999999999999999999998877888887643221 1110000000 00000 0111112222
Q ss_pred hCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeee-eeccCCCcc
Q 026146 158 LWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITF-VDRVFGSSK 222 (242)
Q Consensus 158 ~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~-~~~~~~~s~ 222 (242)
....... ..++.++||+++++.|...+.....||..|+.++...+.++.++|... .|+.++.|.
T Consensus 158 ~~~~~~~-~~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly~Yr~~~~Si 222 (328)
T PRK10073 158 SSRRWTH-VVWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLYKYYLHDTSV 222 (328)
T ss_pred hhCCCCc-cHhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCEEEEEecCCcc
Confidence 2222222 234568999999998654444445699999999999999999998654 456665553
No 18
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=100.00 E-value=7.2e-31 Score=208.81 Aligned_cols=219 Identities=24% Similarity=0.404 Sum_probs=176.8
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTA 83 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a 83 (242)
..++++|||||+||+++.++++++++.+...+ .++|||||||||+|+|.++++++.+.. ..++..+....|.|++.|
T Consensus 3 ~~~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~~-~~~v~~i~~~~n~G~~~A 81 (325)
T PRK10714 3 HPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQAP-DSHIVAILLNRNYGQHSA 81 (325)
T ss_pred CCCCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhhc-CCcEEEEEeCCCCCHHHH
Confidence 44578999999999999999999988653222 578999999999999999999876543 246777777889999999
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCcc
Q 026146 84 YIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVS 163 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (242)
+|.|+++|++||++++|+|...+|+++.++++.+++ +.|+|.+.+... ..++.+...+...+.+.+...+..+.
T Consensus 82 ~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~-~~DvV~~~r~~~-----~~~~~r~~~s~~~~~l~~~~~g~~~~ 155 (325)
T PRK10714 82 IMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADE-GYDVVGTVRQNR-----QDSWFRKTASKMINRLIQRTTGKAMG 155 (325)
T ss_pred HHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHh-hCCEEEEEEcCC-----CCcHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999864 688887755322 23566777777777777777888888
Q ss_pred ccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccchHHHHHHHHHHH
Q 026146 164 DLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGGSEIVEYLKGLL 236 (242)
Q Consensus 164 ~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~~~~~~~~~~~~ 236 (242)
+..+++.+++|++++.+....+...+ +...+...|+++..+|+....|.+|.|+++..+++++....+
T Consensus 156 d~~~gfr~~~r~~~~~l~~~~~~~~~-----~~~l~~~~g~~i~evpv~~~~R~~G~Sk~~~~~~~~~~~~~~ 223 (325)
T PRK10714 156 DYGCMLRAYRRHIVDAMLHCHERSTF-----IPILANTFARRAIEIPVHHAEREFGDSKYSFMRLINLMYDLV 223 (325)
T ss_pred CCCcCeEEEcHHHHHHHHHCCCCccH-----HHHHHHHcCCCEEEEEeEecCccCCcCCCCHHHHHHHHHHHH
Confidence 88888889999999998433333222 334567789999999999999999999999888777764443
No 19
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=100.00 E-value=5e-32 Score=209.20 Aligned_cols=223 Identities=24% Similarity=0.189 Sum_probs=168.3
Q ss_pred cEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHH
Q 026146 10 KYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 10 ~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
++|||||+||+++.+.++|+++.+|... .++|||||||+|+|+|.+.++++.+..+ .+.++..+ +.|.+.|+|.|+
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~~~a~N~g~ 77 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQSAGLNIGI 77 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCchHHHHHHH
Confidence 4899999999999999999999998764 5789999999999999999999877644 67888765 568999999999
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHH---HHHh---CCCc
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLA---QTLL---WPGV 162 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~ 162 (242)
+.+++||++|+|+|+.++|++++++++.+.+++.+++.|........ ............... .... ....
T Consensus 78 ~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (249)
T cd02525 78 RNSRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGES----KFQKAIAVAQSSPLGSGGSAYRGGAVKIG 153 (249)
T ss_pred HHhCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCC----hHHHHHHHHhhchhccCCccccccccccc
Confidence 99999999999999999999999999988877888888766543322 111110000000000 0000 0002
Q ss_pred cccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCccc-chHHHHHHHHHHHHHh
Q 026146 163 SDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKL-GGSEIVEYLKGLLYLL 239 (242)
Q Consensus 163 ~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~ 239 (242)
....|++++++|++++++|++.+....+||.+|+.++.+.|+++.++|....+|....+.. -+++..+|..+..+.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~~~~~ 231 (249)
T cd02525 154 YVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWRARTL 231 (249)
T ss_pred cccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhhHHHH
Confidence 2356777899999999999888777778999999999999999999998777665544322 2356677776666544
No 20
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=100.00 E-value=3.8e-32 Score=208.38 Aligned_cols=223 Identities=17% Similarity=0.159 Sum_probs=160.1
Q ss_pred EEEEeCcccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChH-HHHHHHHHHhCCCcEEEeeCCCCcc-hHHHHHHHH
Q 026146 12 SIIIPTYNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQ-EVVKQLQQLYGEDRILLRPRPKKLG-LGTAYIHGL 88 (242)
Q Consensus 12 siiip~~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~-~~l~~~~~~~~~~~~~~~~~~~~~g-~~~a~n~g~ 88 (242)
|||||+||++ +.|.++|++|.+|.+ +++|||||||+|+|+|. +.++++.+..+ .++.++....+.| +++|+|.|+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~-~~~eiiVvdd~s~D~t~~~~i~~~~~~~~-~~i~~i~~~~~~G~~~~a~n~g~ 78 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDY-PNFEVIVIDNNTKDEALWKPVEAHCAQLG-ERFRFFHVEPLPGAKAGALNYAL 78 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCC-CCcEEEEEeCCCCchhHHHHHHHHHHHhC-CcEEEEEcCCCCCCchHHHHHHH
Confidence 6999999997 789999999998865 57899999999999975 66777766543 4677887777777 589999999
Q ss_pred hhcC--CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHH---HhCCCcc
Q 026146 89 KHAS--GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQT---LLWPGVS 163 (242)
Q Consensus 89 ~~a~--~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 163 (242)
+.+. +||++|+|+|+.++|++|.+++..+++++.+++.+........ ...+...........+... .......
T Consensus 79 ~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T cd06435 79 ERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE--ESLFKRMCYAEYKGFFDIGMVSRNERNAI 156 (236)
T ss_pred HhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC--ccHHHHHHhHHHHHHHHHHhccccccCce
Confidence 9986 6999999999999999999999998766677776543322211 1122111111011111100 0111223
Q ss_pred ccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHHHHHHHh
Q 026146 164 DLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLKGLLYLL 239 (242)
Q Consensus 164 ~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~ 239 (242)
...|+++++||++++++|++++. .+.||.+|+.|+.+.|+++.++|....++..+.+-..+ ++..||..+.++..
T Consensus 157 ~~~g~~~~~rr~~~~~iGgf~~~-~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~~~ 232 (236)
T cd06435 157 IQHGTMCLIRRSALDDVGGWDEW-CITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQIL 232 (236)
T ss_pred EEecceEEEEHHHHHHhCCCCCc-cccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhhhh
Confidence 35677789999999999998765 36899999999999999999999877765544443333 45567766655543
No 21
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=100.00 E-value=3.3e-31 Score=205.03 Aligned_cols=221 Identities=22% Similarity=0.249 Sum_probs=166.9
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCC-CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDV-DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~-~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~ 84 (242)
...|++|||||+||+++.|.++|+++.+|.... .+|+|||||+|+|.|.++++++.+. ++.++..+.|.|++.|+
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~~~g~~~a~ 101 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPERRGKAAAL 101 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCCCCChHHHH
Confidence 457889999999999999999999999986643 3899999999999999999987543 48888888899999999
Q ss_pred HHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHH-hCCCcc
Q 026146 85 IHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTL-LWPGVS 163 (242)
Q Consensus 85 n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 163 (242)
|.|++.+++||++|+|+|+.+++++++++++.+.+++.+++.+......... ................... ......
T Consensus 102 n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 102 NRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG--SGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc--cchhHHHHHHHHHHHHHHHHhcCCee
Confidence 9999999999999999999999999999999997677888888666544321 1111111111111111111 112244
Q ss_pred ccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCccc-chHHHHHHHHHHH
Q 026146 164 DLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKL-GGSEIVEYLKGLL 236 (242)
Q Consensus 164 ~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~-~~~~~~~~~~~~~ 236 (242)
...|+++++||++++ ++ ......||.+++.++.+.|+++.++|....++..+.+.. .+.+..+|.++.+
T Consensus 180 ~~~g~~~~~rr~~~~---~~-~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~g~~ 249 (251)
T cd06439 180 GANGAIYAIRRELFR---PL-PADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAAGNL 249 (251)
T ss_pred eecchHHHhHHHHhc---CC-CcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHhccc
Confidence 567888889999998 22 334457899999999999999999998888777655442 3466666665543
No 22
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.98 E-value=6.3e-31 Score=214.37 Aligned_cols=199 Identities=19% Similarity=0.231 Sum_probs=152.8
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCC-cEEEeeCC----CCcchH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGED-RILLRPRP----KKLGLG 81 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~-~~~~~~~~----~~~g~~ 81 (242)
..|+||||||+||+++.|++||++|.+|.++.++|||||||+|+|+|.++++++.+.+|.. ++++++.+ .+.|++
T Consensus 38 ~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~ 117 (384)
T TIGR03469 38 AWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKL 117 (384)
T ss_pred CCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchH
Confidence 4689999999999999999999999999765469999999999999999999998766522 57777643 235889
Q ss_pred HHHHHHHhhcC-----CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHH--
Q 026146 82 TAYIHGLKHAS-----GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLA-- 154 (242)
Q Consensus 82 ~a~n~g~~~a~-----~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 154 (242)
.|+|.|++.|+ +||++|+|+|+.++|++++++++.+++++.+++.+....... ++.............
T Consensus 118 ~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~-----~~~~~~~~~~~~~~~~~ 192 (384)
T TIGR03469 118 WAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCE-----SFWEKLLIPAFVFFFQK 192 (384)
T ss_pred HHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCC-----CHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999988788877654332221 111111111110100
Q ss_pred ----HHHh--CCCccccccchhhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEee
Q 026146 155 ----QTLL--WPGVSDLTGSFRLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 155 ----~~~~--~~~~~~~~g~~~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
.... ...+....|+|+++||++++++||+++ ...+.||.+++.++.++|+++...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 193 LYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGL 255 (384)
T ss_pred hcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEe
Confidence 0001 112334578899999999999999865 3457899999999999999999875
No 23
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.98 E-value=7.8e-32 Score=201.86 Aligned_cols=196 Identities=19% Similarity=0.258 Sum_probs=149.6
Q ss_pred CcEEEEEeCcccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChH-HHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 9 NKYSIIIPTYNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQ-EVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 9 ~~isiiip~~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~-~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
|++|||||+||++ +.+.++|+|+.+|+. +.+|||||||||+|++. .+++.+....+ .++++..+.+.|.+.|+|.
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~-~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~a~n~ 77 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTY-PNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGGISAATNS 77 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcC-CCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCCHHHHHHH
Confidence 5799999999999 999999999999865 57899999999999754 45555555533 6888888889999999999
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHHHH-HhcCCcEEEEEEEeecCC-ccCchhhHHHHHhHHHHHHHHHhCCCccc
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIKKQ-LETGASIVTGTRYVRSGG-VHGWNLMRKLTSRGANVLAQTLLWPGVSD 164 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (242)
|++.+++||++|+|+|+.++|++++.+++.+ ..++.+++++........ ......... .... ...... .
T Consensus 78 g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~---~ 148 (202)
T cd04184 78 ALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPFFKP--DWSP----DLLLSQ---N 148 (202)
T ss_pred HHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccccCC--CCCH----HHhhhc---C
Confidence 9999999999999999999999999999998 456788887644332211 000000000 0000 000111 2
Q ss_pred cccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeec
Q 026146 165 LTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDR 216 (242)
Q Consensus 165 ~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~ 216 (242)
..++++++||++++++|++++....++|++++.|+.+.|+++.++|.+.+++
T Consensus 149 ~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~~~ 200 (202)
T cd04184 149 YIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLYHW 200 (202)
T ss_pred CccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhhhh
Confidence 3456668999999999999777667899999999999999999999866543
No 24
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.98 E-value=2.4e-31 Score=199.09 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=147.9
Q ss_pred EEEEeCcccc--ccHHHHHHHHHhhhcCCCeEEEEEeCCC-CCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHH
Q 026146 12 SIIIPTYNER--LNIALIVYLIFKHLRDVDFEIIVVDDGS-PDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 12 siiip~~n~~--~~l~~~l~sl~~~~~~~~~eiivvd~~s-~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
||+||+||++ +.|.++|+|+.+|.. +++||||||||| +|.|.++++++.++++ ++++..++|.|.+.|+|.|+
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~-~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~~a~N~g~ 76 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTL-PPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLGKALNEGL 76 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCC-CCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHHHHHHHHH
Confidence 6999999986 589999999999976 468999999998 6778888988877654 88888888999999999999
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHHHHHhc-CCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCcccccc
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIKKQLET-GASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTG 167 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 167 (242)
+.+++||++|+|+|+.++|++++.+++.++++ +.+++.|.............. .. ............ .......+
T Consensus 77 ~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~ 152 (201)
T cd04195 77 KHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGK-RR-LPTSHDDILKFA--RRRSPFNH 152 (201)
T ss_pred HhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecc-cc-CCCCHHHHHHHh--ccCCCCCC
Confidence 99999999999999999999999999998754 566666654433221110000 00 000001111111 11222446
Q ss_pred chhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeee
Q 026146 168 SFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVD 215 (242)
Q Consensus 168 ~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~ 215 (242)
+++++||++++++|++.+. .+.||++++.++..+|+++.++|.+.++
T Consensus 153 ~~~~~rr~~~~~~g~~~~~-~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 153 PTVMFRKSKVLAVGGYQDL-PLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred hHHhhhHHHHHHcCCcCCC-CCchHHHHHHHHHHcCCceecccHHHhh
Confidence 6779999999999988665 7899999999999999999999976544
No 25
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=1.3e-30 Score=198.92 Aligned_cols=194 Identities=19% Similarity=0.210 Sum_probs=146.7
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCC-CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC--CCcchHHHHHHHHh
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDV-DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP--KKLGLGTAYIHGLK 89 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~-~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~--~~~g~~~a~n~g~~ 89 (242)
||||+||+.+.|.++|+++.+|..+. .+|||||||+|+|+|.++++ +....+...+.++..+ .+.|++.++|.|++
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~ 79 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIK 79 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHH
Confidence 69999999999999999999997642 38999999999999999888 4444444578888766 57899999999999
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHH----HHHHHHHhCCCcccc
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGA----NVLAQTLLWPGVSDL 165 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 165 (242)
.+++||++|+|+|+.++|++++++++.+.+++..++.|........ .+......... ...............
T Consensus 80 ~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (229)
T cd04192 80 AAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGK----SLLAKFQRLDWLSLLGLIAGSFGLGKPFMC 155 (229)
T ss_pred HhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCc----cHHHHHHHHHHHHHHHHHhhHHHhcCcccc
Confidence 9999999999999999999999999988877777877765544221 11111111100 000011111112234
Q ss_pred ccchhhcchHHHHHhhhcccC-CCcccchHHHHHHHHcCC-ceEEeee
Q 026146 166 TGSFRLYKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGY-HIEEVPI 211 (242)
Q Consensus 166 ~g~~~~~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~-~i~~~p~ 211 (242)
.|+++++||++++++|++++. ....+|.+++.++.+.|+ ++.+++.
T Consensus 156 ~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 156 NGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred ccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeC
Confidence 577789999999999999764 456789999999999999 8888753
No 26
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=7.2e-31 Score=196.25 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=150.0
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
|||||+||+++.+.++|+++.+|.. +++|||||||+|+|+|.++++++... +.++...++.|++.|+|.|++.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~-~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~n~~~~~a 74 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTY-PNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAMNKGIALA 74 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCC-CCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHHHHHHHHc
Confidence 6999999999999999999999965 56999999999999999999987543 34445567899999999999999
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchh
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
+++|++++|+|+.+.++++.+++..+. .++.+++.|................ ......... . ......++++
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~~~~-~--~~~~~~~~~~ 147 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLDKFL-L--YGMPICHQAT 147 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----CcchhhhHH-h--hcCcccCcce
Confidence 999999999999999999999995554 4578888887665433211111110 000010111 1 1122345566
Q ss_pred hcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeee-ccCCCc
Q 026146 171 LYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVD-RVFGSS 221 (242)
Q Consensus 171 ~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~-~~~~~s 221 (242)
+++|++++++|++.+...+++|.++++++.+.|+++.++|....+ +.++.+
T Consensus 148 ~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~~~~~~~s 199 (202)
T cd06433 148 FFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAAFRLGGVS 199 (202)
T ss_pred EEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhhheecCCc
Confidence 899999999988877777889999999999999999999987765 444443
No 27
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.97 E-value=3.3e-30 Score=197.87 Aligned_cols=202 Identities=18% Similarity=0.264 Sum_probs=146.7
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhc--CCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLR--DVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~--~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
|.||||||+||+++.|+++|+|+.++.. ..++|||||||||+|+|.++++++.+.. +++++..+ +.|.+.|+|.
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~~A~N~ 76 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIYDAMNK 76 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHHHHHHH
Confidence 5799999999999999999999987543 2579999999999999999999875432 47777755 6699999999
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccc
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLT 166 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (242)
|++.|+||||+|+|+|+.+.|+.++.+.....+++.++++|.......+.. ...+.. ... .. ... .. ...
T Consensus 77 Gi~~a~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~--~~~~~~-~~~--~~---~~~-~~-~~~ 146 (248)
T PRK10063 77 GIAMAQGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGH--KIKRSA-KPG--WY---IYH-SL-PAS 146 (248)
T ss_pred HHHHcCCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCc--EEEEcc-CCh--hH---Hhc-CC-CCC
Confidence 999999999999999999988876554443334466777777654322110 110000 000 00 000 11 122
Q ss_pred cchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeee-ccCCCcccch
Q 026146 167 GSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVD-RVFGSSKLGG 225 (242)
Q Consensus 167 g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~-~~~~~s~~~~ 225 (242)
+..++++++.++. ++|++...+.+|++++.++...|+++.++|..... +.+|.|....
T Consensus 147 ~~~~~~~~~~~~~-~~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~y~~~g~S~~~~ 205 (248)
T PRK10063 147 HQAIFFPVSGLKK-WRYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSEFSMGGVSTTNN 205 (248)
T ss_pred CcEEEEEHHHHhc-CCCCcccchHHhHHHHHHHHHcCCcEEEcCceeEEEeCCCCcCchH
Confidence 3445789998875 56777778889999999999999999999976654 7777776543
No 28
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.97 E-value=6.7e-31 Score=201.31 Aligned_cols=218 Identities=18% Similarity=0.216 Sum_probs=155.8
Q ss_pred cEEEEEeCcccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHH
Q 026146 10 KYSIIIPTYNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 10 ~isiiip~~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
+||||||+||++ +.+.+||+++.+|+ ++|||||||+|+|++.+.+++... ...+.++. .++.|++.|+|.|+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~---~~eiivvdd~s~d~~~~~l~~~~~---~~~~~v~~-~~~~g~~~a~n~g~ 73 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK---PLEIIVVTDGDDEPYLSILSQTVK---YGGIFVIT-VPHPGKRRALAEGI 73 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC---CCEEEEEeCCCChHHHHHHHhhcc---CCcEEEEe-cCCCChHHHHHHHH
Confidence 489999999999 99999999999986 679999999999999888754322 23455554 56889999999999
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhH-HHHHhHHHHH-HHHHhCCCccccc
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMR-KLTSRGANVL-AQTLLWPGVSDLT 166 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~ 166 (242)
+.+++||++|+|+|+.+++++|+++++.+.+++.+++.|.....+.....+.... .......... .............
T Consensus 74 ~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (235)
T cd06434 74 RHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLS 153 (235)
T ss_pred HHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEcc
Confidence 9999999999999999999999999999986677777776554443211111111 1111110010 1111222345577
Q ss_pred cchhhcchHHHHHhhhccc---------CCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHHH
Q 026146 167 GSFRLYKKSVLEDVISSCV---------SKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLKG 234 (242)
Q Consensus 167 g~~~~~rr~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~~ 234 (242)
|+++++||++++++++... ....+||.+++.++.+.|+++.++|....++....+-..+ ++..||.++
T Consensus 154 G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~~ 231 (235)
T cd06434 154 GRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQLRWSRS 231 (235)
T ss_pred CcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHhhhhhhc
Confidence 8899999999998754322 2457899999999999999999999877666544433222 344555443
No 29
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.97 E-value=5e-30 Score=221.87 Aligned_cols=226 Identities=18% Similarity=0.209 Sum_probs=161.7
Q ss_pred CCCcEEEEEeCccccc-cHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCC-cchHHH
Q 026146 7 NKNKYSIIIPTYNERL-NIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKK-LGLGTA 83 (242)
Q Consensus 7 ~~~~isiiip~~n~~~-~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~-~g~~~a 83 (242)
..|+|+|+||+|||+. .+++++.++.++.++ .++||+|+||||+|++.++++++ .++++..+.| .|+++|
T Consensus 258 ~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n~~gKAGn 330 (852)
T PRK11498 258 LWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTHEHAKAGN 330 (852)
T ss_pred CCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCCCcchHHH
Confidence 4589999999999984 567899999888776 46999999999999998887765 5788876654 469999
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhh--HHHHH---hHHHHHHHHH
Q 026146 84 YIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLM--RKLTS---RGANVLAQTL 157 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~ 157 (242)
+|.|++++++|||+++|+|++++++++++++..+. +++.++|.+.....+.+.....+. ..... ..+.......
T Consensus 331 LN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~ 410 (852)
T PRK11498 331 INNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGN 410 (852)
T ss_pred HHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHH
Confidence 99999999999999999999999999999998765 456666665444333221100000 00000 0001111111
Q ss_pred hCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHHHHH
Q 026146 158 LWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLKGLL 236 (242)
Q Consensus 158 ~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~ 236 (242)
...+...+.|+++++||++++++||+++. ...||.++++++.++||++.++|.........++-.. .++..||.++.+
T Consensus 411 ~~~~a~~~~Gs~aviRReaLeeVGGfd~~-titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWarG~l 489 (852)
T PRK11498 411 DMWDATFFCGSCAVIRRKPLDEIGGIAVE-TVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMV 489 (852)
T ss_pred HhhcccccccceeeeEHHHHHHhcCCCCC-ccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHHHHHH
Confidence 11122335678889999999999998765 5689999999999999999999866655333333322 366778888877
Q ss_pred HHhh
Q 026146 237 YLLI 240 (242)
Q Consensus 237 ~~~~ 240 (242)
+++.
T Consensus 490 Qi~r 493 (852)
T PRK11498 490 QIFR 493 (852)
T ss_pred HHHH
Confidence 7654
No 30
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=1.6e-30 Score=194.84 Aligned_cols=174 Identities=22% Similarity=0.233 Sum_probs=147.4
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc-
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA- 91 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a- 91 (242)
||||+||+++.|.++|+||.+|.. +.+|||||||||+|+|.++++++....+ ++++..+.|.|.+.++|.|++.+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~-~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n~~~~~a~ 76 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTR-PPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFYEGVRRAY 76 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccC-CCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHHHHHHHHh
Confidence 689999999999999999999965 4679999999999999999998865433 78888899999999999999976
Q ss_pred --CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccch
Q 026146 92 --SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSF 169 (242)
Q Consensus 92 --~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (242)
++||++|+|+|+.+++++++++++.+.+++.+++.+.....+. ..++
T Consensus 77 ~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~ 125 (202)
T cd04185 77 ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-------------------------------SFVG 125 (202)
T ss_pred ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-------------------------------ceEE
Confidence 6899999999999999999999999986677777766554321 2344
Q ss_pred hhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcc
Q 026146 170 RLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSK 222 (242)
Q Consensus 170 ~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~ 222 (242)
++++|++++++|++.+ ...++||.+|+.++.+.|+++ ++|...++|..+.+.
T Consensus 126 ~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~ 178 (202)
T cd04185 126 VLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINK 178 (202)
T ss_pred EEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEcccccc
Confidence 5899999999987755 456789999999999999999 999888777766544
No 31
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.97 E-value=1.4e-30 Score=206.38 Aligned_cols=213 Identities=24% Similarity=0.259 Sum_probs=165.0
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHG 87 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g 87 (242)
++++++||++||..+.+.+||+++.+|+.+ ..++++|||+|+|++.+.++... .+++.++.+++|.|.+++.|.|
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~-~~~iv~vDn~s~d~~~~~~~~~~----~~~v~~i~~~~NlG~agg~n~g 76 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYP-DDVIVVVDNGSTDGSLEALKARF----FPNVRLIENGENLGFAGGFNRG 76 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCC-CcEEEEccCCCCCCCHHHHHhhc----CCcEEEEEcCCCccchhhhhHH
Confidence 579999999999999999999999999764 45666899999999999888642 2489999999999999999999
Q ss_pred HhhcCCC---EEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHh-H-HHHHHHH------
Q 026146 88 LKHASGS---FVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSR-G-ANVLAQT------ 156 (242)
Q Consensus 88 ~~~a~~d---~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~------ 156 (242)
++.|.++ |+++||+|..+++++++++++.+++.+..++++......++............. . .......
T Consensus 77 ~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (305)
T COG1216 77 IKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPD 156 (305)
T ss_pred HHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheeccccccccccceeccccccccc
Confidence 9999654 999999999999999999999999888888887766653321111100000000 0 0000000
Q ss_pred -HhCCCc-cccccchhhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch
Q 026146 157 -LLWPGV-SDLTGSFRLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG 225 (242)
Q Consensus 157 -~~~~~~-~~~~g~~~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~ 225 (242)
.....+ .++.|+++++++++++++|++++ .+.+.||.|+|.|+.++|+++.++|.+.+.|..+.+....
T Consensus 157 ~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~~~~ 228 (305)
T COG1216 157 LSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSKGSS 228 (305)
T ss_pred ccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCCCCCC
Confidence 000111 14789999999999999999866 6777999999999999999999999999999888877543
No 32
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.97 E-value=1.3e-29 Score=196.97 Aligned_cols=207 Identities=15% Similarity=0.137 Sum_probs=146.6
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYI 85 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n 85 (242)
.++|.||||||+||+++.+.++|+|+.+|+. +++|||||||||++ .+.++++......++++++.++.|.|.+.|+|
T Consensus 2 ~~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~-~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N 78 (279)
T PRK10018 2 KDNPLISIYMPTWNRQQLAIRAIKSVLRQDY-SNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGACAVRN 78 (279)
T ss_pred CCCCEEEEEEEeCCCHHHHHHHHHHHHhCCC-CCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCHHHHHH
Confidence 3568999999999999999999999999965 68999999999984 56677776655556899999999999999999
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhh-HHHHHhHHHHHHHHHhCCCcc
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLM-RKLTSRGANVLAQTLLWPGVS 163 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (242)
.|++.|+|+||+|+|+|+.+.|+.++.+++.+.+ ...+++++......+........ ....... .....+...+
T Consensus 79 ~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~n-- 154 (279)
T PRK10018 79 QAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSP--YSRRLFYKRN-- 154 (279)
T ss_pred HHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecCcccccccccCCCCCCC--CCHHHHHHhc--
Confidence 9999999999999999999999999999998876 45566666533222111000000 0000000 0000011111
Q ss_pred ccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeee-eeeccCCCc
Q 026146 164 DLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPIT-FVDRVFGSS 221 (242)
Q Consensus 164 ~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~-~~~~~~~~s 221 (242)
..|+..++++..+.. +++++....++|++|++|+...|.....+|.+ ..+|..+.|
T Consensus 155 -~ig~~~~~~~~~~~~-~~fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~s 211 (279)
T PRK10018 155 -IIGNQVFTWAWRFKE-CLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGE 211 (279)
T ss_pred -CcCceeeehhhhhhh-cccCCCCCccccHHHHHHHHHhcCceEeeccceEEEEcCCCC
Confidence 123333455555554 45777788899999999999999988888865 345554443
No 33
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.97 E-value=1.6e-29 Score=219.51 Aligned_cols=230 Identities=17% Similarity=0.257 Sum_probs=163.5
Q ss_pred CCCcEEEEEeCccccccH-HHHHHHHHhhhcC-CCeEEEEEeCCCCCCh--------------HHHHHHHHHHhCCCcEE
Q 026146 7 NKNKYSIIIPTYNERLNI-ALIVYLIFKHLRD-VDFEIIVVDDGSPDGT--------------QEVVKQLQQLYGEDRIL 70 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l-~~~l~sl~~~~~~-~~~eiivvd~~s~d~t--------------~~~l~~~~~~~~~~~~~ 70 (242)
..|+|+|+||+|||+..+ +.++.++.++.++ .++||+||||||+|+| .+.+++++++. .+.
T Consensus 129 ~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~~---~v~ 205 (713)
T TIGR03030 129 EWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRKL---GVN 205 (713)
T ss_pred cCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHHc---CcE
Confidence 458899999999998655 6799999988776 4799999999999987 34566666654 588
Q ss_pred EeeCCCCc-chHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCc--hhhHHHH
Q 026146 71 LRPRPKKL-GLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGW--NLMRKLT 146 (242)
Q Consensus 71 ~~~~~~~~-g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~--~~~~~~~ 146 (242)
++..+.|. +|++++|.|++++++||++++|+|+.++|+++++++..+.+ ++..++.+.....+.+.... .......
T Consensus 206 yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~ 285 (713)
T TIGR03030 206 YITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMP 285 (713)
T ss_pred EEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhh
Confidence 88877664 58999999999999999999999999999999999999864 45555555443332221100 1111111
Q ss_pred H---hHHHHHHHHHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCccc
Q 026146 147 S---RGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKL 223 (242)
Q Consensus 147 ~---~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~ 223 (242)
. .............+...+.|+++++||++++++||+.. ....||.+++.++.++|+++.++|.+..+...+.+-.
T Consensus 286 ~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~-~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p~sl~ 364 (713)
T TIGR03030 286 NENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG-ETVTEDAETALKLHRRGWNSAYLDRPLIAGLAPETLS 364 (713)
T ss_pred hHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC-CCcCcHHHHHHHHHHcCCeEEEeccccccccCCCCHH
Confidence 0 00111111111112233567788999999999999865 3468999999999999999999998877655444432
Q ss_pred c-hHHHHHHHHHHHHHhh
Q 026146 224 G-GSEIVEYLKGLLYLLI 240 (242)
Q Consensus 224 ~-~~~~~~~~~~~~~~~~ 240 (242)
. .++..||.++.++.+.
T Consensus 365 ~~~~Qr~RWa~G~~qi~~ 382 (713)
T TIGR03030 365 GHIGQRIRWAQGMMQIFR 382 (713)
T ss_pred HHHHHHHHHhcChHHHHh
Confidence 2 3667778777776654
No 34
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=2.3e-30 Score=195.46 Aligned_cols=205 Identities=20% Similarity=0.211 Sum_probs=151.4
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
|||||+||+++.|.++|+|+.+|.. +++|||||||||+|+|.++++++.+.+| ..+.++....|.|.+.++|.|+..+
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~-~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~n~g~~~~ 78 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTY-KNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNFESLLQAA 78 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcC-CCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHHHHHHHhC
Confidence 6999999999999999999999976 4899999999999999999999988775 4678888889999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCc--cCchhhHHHHHhHHHHHHHHHhCCCccccccc
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGV--HGWNLMRKLTSRGANVLAQTLLWPGVSDLTGS 168 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (242)
++||++|+|+|+.++|+++..+++.+.+ +..+++.+.......+. ....................... ....|+
T Consensus 79 ~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 155 (214)
T cd04196 79 DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQ---NVVTGC 155 (214)
T ss_pred CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHh---CccCCc
Confidence 9999999999999999999999998554 44555555443322211 11111100000000011111111 123567
Q ss_pred hhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeee-eeccCCCcc
Q 026146 169 FRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITF-VDRVFGSSK 222 (242)
Q Consensus 169 ~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~-~~~~~~~s~ 222 (242)
++++||+++++++++.+...+.+|.++..++.. +.++.++|... .+|.++.+.
T Consensus 156 ~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~ 209 (214)
T cd04196 156 TMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLILYRQHGNNV 209 (214)
T ss_pred eeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHHHHhcccccc
Confidence 779999999999888666577889988888877 66899998654 445655554
No 35
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.97 E-value=1.7e-29 Score=186.52 Aligned_cols=184 Identities=43% Similarity=0.693 Sum_probs=150.9
Q ss_pred EEEeCccccccHHHHHHHHHhhhc-CCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLR-DVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~-~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
||||+||+++.+.++|+++.+|.. ...+|||||||+|+|+|.++++++.+..+ .++++..++|.|++.|+|.|++.|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n~g~~~a 78 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVRAGFKAA 78 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHHHHHHHh
Confidence 689999999999999999999975 25799999999999999999999887765 568888999999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhh
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRL 171 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 171 (242)
++||++|+|+|+.+.|++|++++..+.+.+.++++|.+...... .........................+....|++++
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGG-AGMPLLRRLGSRLFNFLIRLLLGVRISDTQSGFRL 157 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEeecCCCc-ccchHHHHHHHHHHHHHHHHHcCCCCcCCCCceee
Confidence 99999999999999999999999997777899999988765543 22344444444444444444456667778889999
Q ss_pred cchHHHHHhhhcccCCCcccchHHHHHH
Q 026146 172 YKKSVLEDVISSCVSKGYVFQMEMIVRA 199 (242)
Q Consensus 172 ~rr~~~~~~~~~~~~~~~~~d~~~~~~~ 199 (242)
+||++++++++.....+|.+|.++++|+
T Consensus 158 ~~r~~~~~i~~~~~~~~~~~~~~~~~~~ 185 (185)
T cd04179 158 FRREVLEALLSLLESNGFEFGLELLVGA 185 (185)
T ss_pred eHHHHHHHHHhhccccCcceeeEeeecC
Confidence 9999999996444566677777777663
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.97 E-value=2.9e-30 Score=198.05 Aligned_cols=200 Identities=20% Similarity=0.185 Sum_probs=143.2
Q ss_pred EEEeCcccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 13 IIIPTYNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 13 iiip~~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
+|||+||+. +.+.+||+|+.+| ..|||||||+|+|.+....+. +...+.++..++|.|++.|+|.|++.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q----~~~iivvDn~s~~~~~~~~~~-----~~~~i~~i~~~~n~G~~~a~N~g~~~a 71 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ----VDKVVVVDNSSGNDIELRLRL-----NSEKIELIHLGENLGIAKALNIGIKAA 71 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc----CCEEEEEeCCCCccHHHHhhc-----cCCcEEEEECCCceehHHhhhHHHHHH
Confidence 589999999 9999999999987 459999999998877655443 234788999999999999999999999
Q ss_pred CC---CEEEEEeCCCCCCCCChHHHH---HHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH-HHHHHHhCCCccc
Q 026146 92 SG---SFVVIMDADLSHHPKYLPSFI---KKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN-VLAQTLLWPGVSD 164 (242)
Q Consensus 92 ~~---d~i~~lD~D~~~~~~~l~~l~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (242)
++ ||++|+|+|+.++|+++++++ ....+++...++++............... ....... .............
T Consensus 72 ~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 150 (237)
T cd02526 72 LENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVR-KSGYKLRIQKEGEEGLKEVDF 150 (237)
T ss_pred HhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeecccee-ccCccceecccccCCceEeee
Confidence 87 999999999999999999995 44433344445554443322111100000 0000000 0000000112233
Q ss_pred cccchhhcchHHHHHhhhcccCC-CcccchHHHHHHHHcCCceEEeeeeeeeccCCCcc
Q 026146 165 LTGSFRLYKKSVLEDVISSCVSK-GYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSK 222 (242)
Q Consensus 165 ~~g~~~~~rr~~~~~~~~~~~~~-~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~ 222 (242)
..++++++||++++++|++++.. ..++|.+|+.|+.+.|+++.++|.+.++|..+.+.
T Consensus 151 ~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~~ 209 (237)
T cd02526 151 LITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDKR 209 (237)
T ss_pred eeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCcc
Confidence 45667789999999999987654 33689999999999999999999999888877765
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=8.3e-29 Score=187.97 Aligned_cols=184 Identities=22% Similarity=0.252 Sum_probs=135.5
Q ss_pred EEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhh
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKH 90 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 90 (242)
||||||+||+++.+.++|+++.+|.. ..+|||||||+|+|++.+.+++ ..+.++.. +.|++.++|.|++.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~-~~~evivvdd~s~d~~~~~~~~-------~~~~~~~~--~~g~~~a~n~g~~~ 70 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNP-LPLEIIVVDGGSTDGTVAIARS-------AGVVVISS--PKGRARQMNAGAAA 70 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccC-CCcEEEEEeCCCCccHHHHHhc-------CCeEEEeC--CcCHHHHHHHHHHh
Confidence 68999999999999999999999975 6789999999999999988876 24666553 56899999999999
Q ss_pred cCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchh
Q 026146 91 ASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 91 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
++++|++|+|+|+.++++++++++..+.+.+..++.........+ .. ...... ..... ..... ....+.++
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~---~~~~~-~~~~~-~~~~~~~~ 141 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRFDDPG-PR---LRLLEL---GANLR-SRLFG-LPYGDQGL 141 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeeecCCc-cc---hhhhhh---cccce-ecccC-CCcCCceE
Confidence 999999999999999999999997776554443333332222221 11 110000 00000 00111 12234567
Q ss_pred hcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeee
Q 026146 171 LYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVD 215 (242)
Q Consensus 171 ~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~ 215 (242)
++||++++++|++++.. +.||++|+.|+.+.|+++.+ |...+.
T Consensus 142 ~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G~~~~~-~~~~~~ 184 (221)
T cd02522 142 FIRRELFEELGGFPELP-LMEDVELVRRLRRRGRPALL-PSPVTT 184 (221)
T ss_pred EEEHHHHHHhCCCCccc-cccHHHHHHHHHhCCCEEEc-Cceeee
Confidence 89999999999998777 88999999999999998876 654443
No 38
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.96 E-value=4.2e-28 Score=178.60 Aligned_cols=178 Identities=31% Similarity=0.462 Sum_probs=147.0
Q ss_pred EEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhh
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKH 90 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 90 (242)
||||+||+++.+.++++++.++..+ ..+|||||||||+|+|.++++.+.+.++ ++.++...+|.|++.|+|.|++.
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n~g~~~ 78 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALLAGLDH 78 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHHHHHHh
Confidence 6899999999999999999887653 5789999999999999999999877755 68888888899999999999999
Q ss_pred cCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchh
Q 026146 91 ASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 91 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
+++||++++|+|+.+++++++++++.+ +.+.+++.|.+.... ..+....................+....++++
T Consensus 79 a~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~v~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (181)
T cd04187 79 ARGDAVITMDADLQDPPELIPEMLAKW-EEGYDVVYGVRKNRK-----ESWLKRLTSKLFYRLINKLSGVDIPDNGGDFR 152 (181)
T ss_pred cCCCEEEEEeCCCCCCHHHHHHHHHHH-hCCCcEEEEEecCCc-----chHHHHHHHHHHHHHHHHHcCCCCCCCCCCEE
Confidence 999999999999999999999999985 457888888766543 13333333333333444445566777888888
Q ss_pred hcchHHHHHhhhcccCCCcccchHHHHH
Q 026146 171 LYKKSVLEDVISSCVSKGYVFQMEMIVR 198 (242)
Q Consensus 171 ~~rr~~~~~~~~~~~~~~~~~d~~~~~~ 198 (242)
++||++++++|++++...|..+++++++
T Consensus 153 ~~~r~~~~~i~~~d~~~~~~~~~~~~~~ 180 (181)
T cd04187 153 LMDRKVVDALLLLPERHRFLRGLIAWVG 180 (181)
T ss_pred EEcHHHHHHHHhcCCCCccHHHHHHHhc
Confidence 9999999999999999999888777653
No 39
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.96 E-value=9.5e-28 Score=189.00 Aligned_cols=225 Identities=22% Similarity=0.293 Sum_probs=155.2
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhc-CCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEe-eCCCCcchHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLR-DVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLR-PRPKKLGLGTA 83 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~-~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~-~~~~~~g~~~a 83 (242)
+..+++|||||+||+++.|.++++++.+|.. ...+|||||||||+|+|.++++++....-. ....+ ..+.|.|++.|
T Consensus 28 ~~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n~Gkg~A 106 (306)
T PRK13915 28 KAGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPRPGKGEA 106 (306)
T ss_pred cCCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccCCCHHHH
Confidence 3568999999999999999999999998865 345799999999999999999887432110 11111 23678899999
Q ss_pred HHHHHhhcCCCEEEEEeCCCC-CCCCChHHHHHHHH-hcCCcEEEEEEEeec--CC----ccCchhhHHHHHhHHHHHHH
Q 026146 84 YIHGLKHASGSFVVIMDADLS-HHPKYLPSFIKKQL-ETGASIVTGTRYVRS--GG----VHGWNLMRKLTSRGANVLAQ 155 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~ 155 (242)
+|.|+..+++||++|+|+|+. ++|+++.++++.+. +++.+++.|...... .+ ..+....+.......+....
T Consensus 107 ~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~~~l~~~~~~ 186 (306)
T PRK13915 107 LWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVARPLLNLLRP 186 (306)
T ss_pred HHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999997 89999999999986 567888887422211 00 00111111111212221111
Q ss_pred HHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHH-HcCC-ceEEeeeeeeeccCCCcccchHHHHHHHH
Q 026146 156 TLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRAC-RKGY-HIEEVPITFVDRVFGSSKLGGSEIVEYLK 233 (242)
Q Consensus 156 ~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~-~~g~-~i~~~p~~~~~~~~~~s~~~~~~~~~~~~ 233 (242)
.+ ..+.+..+|++++||++++++. + ..+|+.+.++...+. +.|+ ++..++.....|.+. +.....+...
T Consensus 187 ~l--~~i~dp~sG~~a~rr~~l~~l~-~--~~~yg~e~~~l~~~~~~~g~~~i~~V~l~~r~h~~~----~~~~~~~m~~ 257 (306)
T PRK13915 187 EL--AGFVQPLGGEYAGRRELLESLP-F--VPGYGVEIGLLIDTLDRLGLDAIAQVDLGVRAHRNQ----PLRALGRMAR 257 (306)
T ss_pred hh--hcccCcchHhHHHHHHHHHhCC-C--CCCCeehHHHHHHHHHHhCcCceEEEEecccccCCC----CHHHHHHHHH
Confidence 11 2345566777899999999883 3 345777899999887 4687 788888665555431 3445555555
Q ss_pred HHHHHhh
Q 026146 234 GLLYLLI 240 (242)
Q Consensus 234 ~~~~~~~ 240 (242)
.+++.++
T Consensus 258 ~i~~~~~ 264 (306)
T PRK13915 258 QIIATAL 264 (306)
T ss_pred HHHHHHH
Confidence 5555544
No 40
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.96 E-value=2.4e-28 Score=177.12 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=142.1
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
|+||+||+.+.+.++++++.+|.. +.++|+|+||||++++.+.+++.. ..+.++..+.+.|++.|+|.|++.++
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~-~~~~iiivdd~s~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~a~n~~~~~~~ 74 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTY-PDFEVIVVDNASTDGSVELLRELF-----PEVRLIRNGENLGFGAGNNQGIREAK 74 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccC-CCeEEEEEECCCCchHHHHHHHhC-----CCeEEEecCCCcChHHHhhHHHhhCC
Confidence 689999999999999999999865 678999999999999999888762 25888888889999999999999999
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLY 172 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 172 (242)
++|++|+|+|+.+++++++.+++.+.+.+...+++.. ..|+++++
T Consensus 75 ~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~ 119 (166)
T cd04186 75 GDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-----------------------------------VSGAFLLV 119 (166)
T ss_pred CCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------CceeeEee
Confidence 9999999999999999999999987665433333333 56788899
Q ss_pred chHHHHHhhhcccC-CCcccchHHHHHHHHcCCceEEeeeeeeecc
Q 026146 173 KKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHIEEVPITFVDRV 217 (242)
Q Consensus 173 rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~ 217 (242)
++++++++|++.+. ..+++|.+|+.++.+.|+++.++|...++|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 120 RREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred eHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 99999999888664 3478999999999999999999998877764
No 41
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.96 E-value=2.8e-28 Score=179.65 Aligned_cols=178 Identities=19% Similarity=0.315 Sum_probs=139.6
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
||||+||+.+.++++|+++.+|+. .++||||+||+|+|+|.++++++.+..+...+.+...+.+.|++.++|.|++.++
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~-~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~ 79 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSI-LPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAK 79 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccC-CCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhc
Confidence 689999999999999999999864 5789999999999999999998876544223444455556789999999999999
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLY 172 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 172 (242)
++|++|+|+|+.+++++++++++.+ + +..++.|.+......... ....|+++++
T Consensus 80 g~~i~~lD~D~~~~~~~l~~~~~~~-~-~~~~v~g~~~~~~~~~~~------------------------~~~~~~~~~~ 133 (182)
T cd06420 80 GDYLIFIDGDCIPHPDFIADHIELA-E-PGVFLSGSRVLLNEKLTE------------------------RGIRGCNMSF 133 (182)
T ss_pred CCEEEEEcCCcccCHHHHHHHHHHh-C-CCcEEecceeecccccce------------------------eEeccceEEE
Confidence 9999999999999999999999887 3 344555655543322110 3345667788
Q ss_pred chHHHHHhhhcccCCC-c-ccchHHHHHHHHcCCceEEee-eeeeecc
Q 026146 173 KKSVLEDVISSCVSKG-Y-VFQMEMIVRACRKGYHIEEVP-ITFVDRV 217 (242)
Q Consensus 173 rr~~~~~~~~~~~~~~-~-~~d~~~~~~~~~~g~~i~~~p-~~~~~~~ 217 (242)
+|+.+.++|++.+... + .||.+++.|+.+.|++...+. .+.++|.
T Consensus 134 ~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h~ 181 (182)
T cd06420 134 WKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFHL 181 (182)
T ss_pred EHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeeec
Confidence 9999999999876543 2 699999999999997766664 6666653
No 42
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=1.4e-27 Score=198.98 Aligned_cols=228 Identities=27% Similarity=0.313 Sum_probs=172.3
Q ss_pred CCcEEEEEeCccccc-cHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC-CCCcchHHHHH
Q 026146 8 KNKYSIIIPTYNERL-NIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR-PKKLGLGTAYI 85 (242)
Q Consensus 8 ~~~isiiip~~n~~~-~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~-~~~~g~~~a~n 85 (242)
.|+++|+||+|||+. .++++++++.+|.+ +.+||++|||+|+|++.+++++..++++ ++++++.. ..+.|+++|.|
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dy-p~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~gK~~al~ 130 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDY-PRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNGGKAGALN 130 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCC-CCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCccchHHHH
Confidence 489999999999998 99999999999965 5799999999999999999999988874 34555543 56889999999
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHH----HHH-HHhCC
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANV----LAQ-TLLWP 160 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~ 160 (242)
.|++.+++|+|+++|+|..++++++.+++..+.+++..++++.....+.... ..+........... ... .....
T Consensus 131 ~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~g 209 (439)
T COG1215 131 NGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDP-SNLLGRIQAIEYLSAFYFRLRAASKGG 209 (439)
T ss_pred HHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCCh-hhhcchhcchhhhhhHHHhhhhhhhcC
Confidence 9999999999999999999999999999999987666656665444332211 11221111111111 111 11122
Q ss_pred CccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHHHHHHHh
Q 026146 161 GVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLKGLLYLL 239 (242)
Q Consensus 161 ~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~ 239 (242)
.+....|++.++||++++++|++ ......||.+++.++...|+++.++|.+..+-...++-.. +++..||.++.++.+
T Consensus 210 ~~~~~~G~~~~~rr~aL~~~g~~-~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~~~~~ 288 (439)
T COG1215 210 LISFLSGSSSAFRRSALEEVGGW-LEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARGGLQVL 288 (439)
T ss_pred CeEEEcceeeeEEHHHHHHhCCC-CCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcccceee
Confidence 35667888999999999999864 5667789999999999999999999988766555555433 367777777665544
No 43
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.96 E-value=2.2e-28 Score=177.38 Aligned_cols=167 Identities=28% Similarity=0.452 Sum_probs=127.6
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
|||||+||+.+.|.++|+|+.+| ....+|||||||||+|+|.++++++.+ ....++++..++|.|.+.++|.|++.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q-~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~~a 77 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ-TDPDFEIIVVDDGSTDETEEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIKHA 77 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH-SGCEEEEEEEECS-SSSHHHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHHH-
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc-cCCCEEEEEeccccccccccccccccc--ccccccccccccccccccccccccccc
Confidence 79999999999999999999999 336899999999999999999999877 235899999999999999999999999
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHH--HHHhHHHHHHHHHhCCCccccccch
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRK--LTSRGANVLAQTLLWPGVSDLTGSF 169 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~ 169 (242)
+++|++++|+|+.+.+++++++++.+++++.+++++................. ......................+++
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSC 157 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSC
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccE
Confidence 99999999999999999999999999998888888877765443211111110 0011111122222344455667888
Q ss_pred hhcchHHHHHhh
Q 026146 170 RLYKKSVLEDVI 181 (242)
Q Consensus 170 ~~~rr~~~~~~~ 181 (242)
+++||++++++|
T Consensus 158 ~~~rr~~~~~~~ 169 (169)
T PF00535_consen 158 ALFRRSVFEEIG 169 (169)
T ss_dssp EEEEEHHHHHCH
T ss_pred EEEEHHHHHhhC
Confidence 899999999985
No 44
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.95 E-value=2.9e-26 Score=189.87 Aligned_cols=228 Identities=16% Similarity=0.152 Sum_probs=157.2
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
+.|+++|+||+|||++.|.+++++++.+..++++||+|++|+|+|+|.+.++++.+++|...+.+...+...||+.|+|.
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~ 143 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIVPHDGPTSKADCLNW 143 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHH
Confidence 47899999999999999999999976554447899999999999999999999999888543334444444579999999
Q ss_pred HHhhc------CC---CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHh--HHH---H
Q 026146 87 GLKHA------SG---SFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSR--GAN---V 152 (242)
Q Consensus 87 g~~~a------~~---d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~---~ 152 (242)
|++.+ +| |+++++|+|+.++|+.++.+...+ .+.+++.......+.. ...+....... ... .
T Consensus 144 ~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~--~~~~~VQ~pv~~~~~~--~~~~~ag~y~~ef~~~~~~~ 219 (504)
T PRK14716 144 IYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL--PRHDFVQLPVFSLPRD--WGEWVAGTYMDEFAESHLKD 219 (504)
T ss_pred HHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc--CCCCEEecceeccCCc--hhHHHHHHHHHHHHHHHHHH
Confidence 99764 45 999999999999999999766554 3456665443332211 11111111100 000 0
Q ss_pred H-HHHHhCCCccccccchhhcchHHHHHh----hh-cccCCCcccchHHHHHHHHcCCceEEeeeeeee-----------
Q 026146 153 L-AQTLLWPGVSDLTGSFRLYKKSVLEDV----IS-SCVSKGYVFQMEMIVRACRKGYHIEEVPITFVD----------- 215 (242)
Q Consensus 153 ~-~~~~~~~~~~~~~g~~~~~rr~~~~~~----~~-~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~----------- 215 (242)
. .....+ ......|.++++||++++++ || ........||+++++++.+.|+++.++|.+..+
T Consensus 220 l~~r~~LG-~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~ 298 (504)
T PRK14716 220 LPVREALG-GLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEP 298 (504)
T ss_pred HHHHHhcC-CccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccc
Confidence 1 111111 23345677889999999998 33 244668899999999999999999999987433
Q ss_pred ---ccC-CCc-ccchHHHHHHHHHH-HHHh
Q 026146 216 ---RVF-GSS-KLGGSEIVEYLKGL-LYLL 239 (242)
Q Consensus 216 ---~~~-~~s-~~~~~~~~~~~~~~-~~~~ 239 (242)
+.. +.+ +...++..||..++ ++.|
T Consensus 299 v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~ 328 (504)
T PRK14716 299 IATREFFPDTFKAAVRQKARWIYGIAFQGW 328 (504)
T ss_pred ccccccCccCHHHHHHHHHHHHhchHHhhH
Confidence 111 122 12347778888775 4443
No 45
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.95 E-value=1.5e-27 Score=187.49 Aligned_cols=198 Identities=18% Similarity=0.123 Sum_probs=137.7
Q ss_pred eCccc-cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc---
Q 026146 16 PTYNE-RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--- 91 (242)
Q Consensus 16 p~~n~-~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--- 91 (242)
+|||+ .+.|+++++++.+|. .+||||||+|+++ +.++++.+.. +++++++.++|.|.++|+|.|++.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~----~~iiVVDN~S~~~--~~~~~~~~~~--~~i~~i~~~~N~G~a~a~N~Gi~~a~~~ 72 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV----DRIIAVDNSPHSD--QPLKNARLRG--QKIALIHLGDNQGIAGAQNQGLDASFRR 72 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC----CEEEEEECcCCCc--HhHHHHhccC--CCeEEEECCCCcchHHHHHHHHHHHHHC
Confidence 58997 589999999999883 4899999999765 2233333333 4799999999999999999999998
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHHhcC-CcEEEEEEEeecCCccCchhhHHHHHhHHHHH-HHHHhC-CCccccccc
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQLETG-ASIVTGTRYVRSGGVHGWNLMRKLTSRGANVL-AQTLLW-PGVSDLTGS 168 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~g~ 168 (242)
.+|||+++|+|+.+++++++.+++.+++.+ ...++|+......+....+..... ....... ...... .......++
T Consensus 73 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s 151 (281)
T TIGR01556 73 GVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLD-GLLLRQISLDGLTTPQKTSFLISS 151 (281)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeec-ccceeeecccccCCceeccEEEcC
Confidence 689999999999999999999999987654 444555444332211111100000 0000000 000000 112222233
Q ss_pred hhhcchHHHHHhhhcccCC-CcccchHHHHHHHHcCCceEEeeeeeeeccCCCcc
Q 026146 169 FRLYKKSVLEDVISSCVSK-GYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSK 222 (242)
Q Consensus 169 ~~~~rr~~~~~~~~~~~~~-~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~ 222 (242)
+++++|++++++|++++.. ...+|.|+|+|+.++|+++.++|.+.++|..|.+.
T Consensus 152 g~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~~ 206 (281)
T TIGR01556 152 GCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDSK 206 (281)
T ss_pred cceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCcc
Confidence 4589999999999887643 55789999999999999999999988888777653
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.95 E-value=1.6e-26 Score=181.04 Aligned_cols=208 Identities=21% Similarity=0.207 Sum_probs=146.0
Q ss_pred EEEEeCccccc------cHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC---CCcchHH
Q 026146 12 SIIIPTYNERL------NIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP---KKLGLGT 82 (242)
Q Consensus 12 siiip~~n~~~------~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~---~~~g~~~ 82 (242)
|||||++++.. .+..+|.++.++....++||||||++|++.+.+.++++.+... ...++... ...|.+.
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~~a~ 78 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFSRAK 78 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcCHHH
Confidence 79999999874 4666688887754557899999999999988788888777644 23244433 3469999
Q ss_pred HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHH---HHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHH-HHHh
Q 026146 83 AYIHGLKHASGSFVVIMDADLSHHPKYLPSFIK---KQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLA-QTLL 158 (242)
Q Consensus 83 a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (242)
|+|.|++.|++|+|+|+|+|+.++|++++++++ .+.++...++..+........ ................. ....
T Consensus 79 arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~-~~~~~~~~~~~~~~~~~~~~~~ 157 (281)
T PF10111_consen 79 ARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEG-SEKFYSQFKNLWDHEFLESFIS 157 (281)
T ss_pred HHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchh-hHHHhhcchhcchHHHHHHHhh
Confidence 999999999999999999999999999999999 565544444444433332221 11111111000111111 1111
Q ss_pred C----CCccccccchhhcchHHHHHhhhcccCC-Cc-ccchHHHHHHHHcCCceEEeeeeeeeccCCCcc
Q 026146 159 W----PGVSDLTGSFRLYKKSVLEDVISSCVSK-GY-VFQMEMIVRACRKGYHIEEVPITFVDRVFGSSK 222 (242)
Q Consensus 159 ~----~~~~~~~g~~~~~rr~~~~~~~~~~~~~-~~-~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~ 222 (242)
. .......|++++++|+.+.++||+++.+ ++ +||.||+.|+.+.|..+...|....+|.+..+.
T Consensus 158 ~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~~~~~ 227 (281)
T PF10111_consen 158 GKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSHRWPI 227 (281)
T ss_pred ccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccccCCCc
Confidence 1 1122345688899999999999998865 44 799999999999999999999887766554443
No 47
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.94 E-value=3.8e-26 Score=168.42 Aligned_cols=172 Identities=23% Similarity=0.240 Sum_probs=125.6
Q ss_pred EEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
||||+||+++.|.++|+++.+|.++ ..+|||||||+|+|+|.++++++ ...+.......+.|++.|+|.|++.+
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~-----~~~~~~~~~~~~~gk~~aln~g~~~a 75 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA-----GATVLERHDPERRGKGYALDFGFRHL 75 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc-----CCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999998764 46899999999999999988765 22344444567889999999999987
Q ss_pred C-----CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHH---hHHHHHHHH-Hh-CCC
Q 026146 92 S-----GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTS---RGANVLAQT-LL-WPG 161 (242)
Q Consensus 92 ~-----~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~-~~~ 161 (242)
. +|+++++|+|+.++|+++..++..+.+ +.+++.|.....+.+. ++...... ...+.+... .. -..
T Consensus 76 ~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~-~~~~v~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (183)
T cd06438 76 LNLADDPDAVVVFDADNLVDPNALEELNARFAA-GARVVQAYYNSKNPDD---SWITRLYAFAFLVFNRLRPLGRSNLGL 151 (183)
T ss_pred HhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh-CCCeeEEEEeeeCCcc---CHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4 899999999999999999999999875 6678877665543221 22222211 111111111 11 122
Q ss_pred ccccccchhhcchHHHHHhhhcccCCCcccchHH
Q 026146 162 VSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEM 195 (242)
Q Consensus 162 ~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~ 195 (242)
...+.|+++++||+++++ ||+. .....||++|
T Consensus 152 ~~~~~G~~~~~rr~~l~~-~g~~-~~~l~ED~~~ 183 (183)
T cd06438 152 SCQLGGTGMCFPWAVLRQ-APWA-AHSLTEDLEF 183 (183)
T ss_pred CeeecCchhhhHHHHHHh-CCCC-CCCcccccCC
Confidence 334568888999999999 6664 4566788764
No 48
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.94 E-value=1.7e-25 Score=171.76 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=151.4
Q ss_pred EEEEEeCcccccc-HHHHHHHHHh----hhcCCCeEEEEEeCCCCCChHH----HHHHHHHHhC-CCcEEEeeCCCCcc-
Q 026146 11 YSIIIPTYNERLN-IALIVYLIFK----HLRDVDFEIIVVDDGSPDGTQE----VVKQLQQLYG-EDRILLRPRPKKLG- 79 (242)
Q Consensus 11 isiiip~~n~~~~-l~~~l~sl~~----~~~~~~~eiivvd~~s~d~t~~----~l~~~~~~~~-~~~~~~~~~~~~~g- 79 (242)
+||+||+||++.. +.++|++..+ |.+.+.+||+|+||++++.... .+.++.++++ ..++++++...|.|
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~ 80 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGR 80 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCc
Confidence 6999999998876 7888888765 4333689999999987654321 2333555543 35788888888877
Q ss_pred hHHHHHHHHhh--cCCCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHH
Q 026146 80 LGTAYIHGLKH--ASGSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQT 156 (242)
Q Consensus 80 ~~~a~n~g~~~--a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (242)
+++++|.++.. +++|||+++|+|..++|++|.+++..+. +++.++|.+.....+.. ++...............
T Consensus 81 Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~----~~~~~~~~~~~~~~~~~ 156 (254)
T cd04191 81 KAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE----TLFARLQQFANRLYGPV 156 (254)
T ss_pred cHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC----CHHHHHHHHHHHHHHHH
Confidence 67888888876 6789999999999999999999999996 55677777655444432 33333332111111110
Q ss_pred ------HhCCCccccccchhhcchHHHHHhhhccc--------CCCcccchHHHHHHHHcCCceEEeeeeee-eccCCCc
Q 026146 157 ------LLWPGVSDLTGSFRLYKKSVLEDVISSCV--------SKGYVFQMEMIVRACRKGYHIEEVPITFV-DRVFGSS 221 (242)
Q Consensus 157 ------~~~~~~~~~~g~~~~~rr~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~g~~i~~~p~~~~-~~~~~~s 221 (242)
.-..+...+.|.++++||++++++++++. .....||+++.+++.++||++.+.|.... +-..+.+
T Consensus 157 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~p~~ 236 (254)
T cd04191 157 FGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEECPPT 236 (254)
T ss_pred HHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeECCCC
Confidence 00123345668889999999999643321 34578999999999999999999997653 3222333
Q ss_pred c-cchHHHHHHHHHHH
Q 026146 222 K-LGGSEIVEYLKGLL 236 (242)
Q Consensus 222 ~-~~~~~~~~~~~~~~ 236 (242)
- .-+++..||.++.+
T Consensus 237 ~~~~~~qr~RW~~G~~ 252 (254)
T cd04191 237 LIDFLKRDRRWCQGNL 252 (254)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 2 23466777776644
No 49
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.94 E-value=1.7e-26 Score=177.60 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=138.7
Q ss_pred EEEeCcccc-ccHHHHHHHHHhhhcC---------CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHH
Q 026146 13 IIIPTYNER-LNIALIVYLIFKHLRD---------VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGT 82 (242)
Q Consensus 13 iiip~~n~~-~~l~~~l~sl~~~~~~---------~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (242)
||||+||++ ..|+++|+|+.+|.++ ..+|||||+|||+| .|.|+..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 699999997 7999999999999875 37999999999998 1234433
Q ss_pred -------HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhhHHHHHh---HHH
Q 026146 83 -------AYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLMRKLTSR---GAN 151 (242)
Q Consensus 83 -------a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~ 151 (242)
+.|.++..+++||++++|+|+.+++++|+.++..+.+ +++++|.|.....+.. .++....... ...
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~---~~~~~~~q~~ey~~~~ 133 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKK---QGPLVMYQVFEYAISH 133 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCc---chhHHHhHheehhhhh
Confidence 5688888899999999999999999999999999964 4556666655443321 1222211111 001
Q ss_pred HHHHH-Hh-CCCccccccchhhcchHHHHHhhhcccC-------------------CCcccchHHHHHHHHcCCceEE--
Q 026146 152 VLAQT-LL-WPGVSDLTGSFRLYKKSVLEDVISSCVS-------------------KGYVFQMEMIVRACRKGYHIEE-- 208 (242)
Q Consensus 152 ~~~~~-~~-~~~~~~~~g~~~~~rr~~~~~~~~~~~~-------------------~~~~~d~~~~~~~~~~g~~i~~-- 208 (242)
..... .. ...+..+.|+++++|++++++++++... ..++||.+++.++..+|+++.+
T Consensus 134 ~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~~~~~ 213 (244)
T cd04190 134 WLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKRKYLY 213 (244)
T ss_pred hhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCccEEEE
Confidence 11110 11 1224557788899999999998654321 2368999999999999999999
Q ss_pred eeeeeeeccCCCcccc-hHHHHHHHHHH
Q 026146 209 VPITFVDRVFGSSKLG-GSEIVEYLKGL 235 (242)
Q Consensus 209 ~p~~~~~~~~~~s~~~-~~~~~~~~~~~ 235 (242)
+|.+..+.....+-.. +++..||.++.
T Consensus 214 ~~~a~~~~~~p~s~~~~~~QR~RW~~g~ 241 (244)
T cd04190 214 VPGAVAETDVPETFVELLSQRRRWINST 241 (244)
T ss_pred ecccEEEEECCCCHHHHHHHhHhhhccc
Confidence 8988877665555333 36666776554
No 50
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.93 E-value=9.1e-25 Score=162.04 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=118.6
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC---CCCcchHHHHHHHHh
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR---PKKLGLGTAYIHGLK 89 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~---~~~~g~~~a~n~g~~ 89 (242)
||||+||+++.|.++|++|.+|. +.+|||||||+|+|+|.++++ +.... .+++++.. ..+.|++.|+|.|++
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~--~~~eIivvdd~S~D~t~~~~~-~~~~~--~~v~~i~~~~~~~~~Gk~~aln~g~~ 75 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK--PNFLVLVIDDASDDDTAGIVR-LAITD--SRVHLLRRHLPNARTGKGDALNAAYD 75 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC--CCeEEEEEECCCCcCHHHHHh-heecC--CcEEEEeccCCcCCCCHHHHHHHHHH
Confidence 69999999999999999999986 578999999999999999998 32222 36777764 356799999999999
Q ss_pred hcC-----------CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH----HHH
Q 026146 90 HAS-----------GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN----VLA 154 (242)
Q Consensus 90 ~a~-----------~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 154 (242)
.++ ++|++|+|+|+.++|++++.+...+.+++++++.+.....+.. ..+........+. ...
T Consensus 76 ~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~---~~~~~~~~~~e~~~~~~~~~ 152 (191)
T cd06436 76 QIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRH---KNLLTILQDLEFFIIIAATQ 152 (191)
T ss_pred HHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCC---CCHHHHHHHHHHHHHHHHHH
Confidence 875 3799999999999999999988877655666666655444322 1222211111111 111
Q ss_pred HHHhCCCccccccchhhcchHHHHHhhhccc
Q 026146 155 QTLLWPGVSDLTGSFRLYKKSVLEDVISSCV 185 (242)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~ 185 (242)
......+...+.|.+.++||++++++|++..
T Consensus 153 ~~~~~~~~~~~~G~~~~~r~~~l~~vgg~~~ 183 (191)
T cd06436 153 SLRALTGTVGLGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred HHHHhcCcEEECCeeEEEeHHHHHHhhcCCC
Confidence 1112222234567778999999999976543
No 51
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.92 E-value=3.6e-25 Score=161.55 Aligned_cols=174 Identities=30% Similarity=0.419 Sum_probs=126.7
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
||||+||+++.|.++|+++.+|.. ..++|+||||+|+|.|.+.+.++....+ ..+.++...++.|++.++|.|++.++
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~-~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n~~~~~~~ 78 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDY-PKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALNAGLRHAK 78 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCC-CceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHHHHHHhcC
Confidence 689999999999999999999865 6889999999999999999988765542 35777778889999999999999999
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHH-----HHHHhCCCccccc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVL-----AQTLLWPGVSDLT 166 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 166 (242)
++|++|+|+|+.++++++++++..+. .++.+++.+......... .+............ .............
T Consensus 79 ~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (180)
T cd06423 79 GDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSE---NLLTRLQAIEYLSIFRLGRRAQSALGGVLVLS 155 (180)
T ss_pred CCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcC---cceeccchheecceeeeeeehhheecceeecC
Confidence 99999999999999999999965554 445666666555443320 00000000000000 0000112345577
Q ss_pred cchhhcchHHHHHhhhcccCCCcccc
Q 026146 167 GSFRLYKKSVLEDVISSCVSKGYVFQ 192 (242)
Q Consensus 167 g~~~~~rr~~~~~~~~~~~~~~~~~d 192 (242)
|+++++||++++++|+|++. .++||
T Consensus 156 g~~~~~~~~~~~~~ggf~~~-~~~eD 180 (180)
T cd06423 156 GAFGAFRREALREVGGWDED-TLTED 180 (180)
T ss_pred chHHHHHHHHHHHhCCcccc-CcCCC
Confidence 88999999999999987554 34444
No 52
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.91 E-value=5.6e-23 Score=152.68 Aligned_cols=230 Identities=24% Similarity=0.335 Sum_probs=176.5
Q ss_pred CcEEEEEeCccccccHHH----HHHHHHhhhcC---CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchH
Q 026146 9 NKYSIIIPTYNERLNIAL----IVYLIFKHLRD---VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLG 81 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~----~l~sl~~~~~~---~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~ 81 (242)
+-+|||||+||++..++. +++.|.+.... ..+|++||||||.|.|.+++-++..++....++++...+|.|+|
T Consensus 67 ~~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKG 146 (323)
T KOG2977|consen 67 MYLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKG 146 (323)
T ss_pred ceeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCC
Confidence 479999999999988864 45555444332 36899999999999999999999977766789999999999999
Q ss_pred HHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHH-----hcCCcEEEEEEEeecC--CccCchhhHHHHHhHHHHHH
Q 026146 82 TAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQL-----ETGASIVTGTRYVRSG--GVHGWNLMRKLTSRGANVLA 154 (242)
Q Consensus 82 ~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~-----~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 154 (242)
+|...|+.++.|++++|.|+|.----.-++.+.+++. ....++++|++-.... .....++.+.+.=..++.+.
T Consensus 147 gAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv 226 (323)
T KOG2977|consen 147 GAVRKGMLSSRGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLV 226 (323)
T ss_pred cceehhhHhccCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHH
Confidence 9999999999999999999998744444555555543 2345677776655432 22333444444444455555
Q ss_pred HHHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHH
Q 026146 155 QTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLK 233 (242)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~ 233 (242)
..+-..++.+.++++.++.|.+..++..+.....|..|.++.+-+.+.+..+..+|+.+.+ .+.|+.. .+..++..+
T Consensus 227 ~~~a~rsI~DTQcgfklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v~w~E--IdgSKi~~~~s~~~m~~ 304 (323)
T KOG2977|consen 227 WIFAIRSIRDTQCGFKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPVEWTE--IDGSKITPVWSWLQMGS 304 (323)
T ss_pred HHHhcCcccccchhHHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeeeEEEE--cCCceeehHHHHHHHhh
Confidence 5566778999999999999999999988888999999999999999999999999987654 4667765 566666666
Q ss_pred HHHHHhh
Q 026146 234 GLLYLLI 240 (242)
Q Consensus 234 ~~~~~~~ 240 (242)
.++-+++
T Consensus 305 dlv~i~v 311 (323)
T KOG2977|consen 305 DLVLIRV 311 (323)
T ss_pred hhheEee
Confidence 6665543
No 53
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.91 E-value=1.8e-22 Score=172.98 Aligned_cols=229 Identities=14% Similarity=0.159 Sum_probs=159.5
Q ss_pred CCCcEEEEEeCccccc-----cHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHH----HHHHHHHhC-CCcEEEeeCCC
Q 026146 7 NKNKYSIIIPTYNERL-----NIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEV----VKQLQQLYG-EDRILLRPRPK 76 (242)
Q Consensus 7 ~~~~isiiip~~n~~~-----~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~----l~~~~~~~~-~~~~~~~~~~~ 76 (242)
..++++|+||+||++. .++.+++++..+.+..++|++|+||++++++... +.++.++++ ..++.+.+...
T Consensus 122 ~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~yr~R~~ 201 (691)
T PRK05454 122 PEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFYRRRRR 201 (691)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEEEECCc
Confidence 4678999999999884 5888999998886556899999999999886543 345566553 34788888777
Q ss_pred Ccc-hHHHHHHHHhh--cCCCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhhHHHHHhHHHH
Q 026146 77 KLG-LGTAYIHGLKH--ASGSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANV 152 (242)
Q Consensus 77 ~~g-~~~a~n~g~~~--a~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
|.| |++++|.+++. +++||++++|+|..++++++.+++..++ ++++++|.+.....+.+ ++..+........
T Consensus 202 n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~----slfaR~qqf~~~~ 277 (691)
T PRK05454 202 NVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGAD----TLFARLQQFATRV 277 (691)
T ss_pred CCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCC----CHHHHHHHHHHHH
Confidence 765 78888888988 5679999999999999999999999987 45666776544333322 3333333221111
Q ss_pred HHHHH-hC-----CCccccccchhhcchHHHHHhhhcc--------cCCCcccchHHHHHHHHcCCceEEeeee-eeecc
Q 026146 153 LAQTL-LW-----PGVSDLTGSFRLYKKSVLEDVISSC--------VSKGYVFQMEMIVRACRKGYHIEEVPIT-FVDRV 217 (242)
Q Consensus 153 ~~~~~-~~-----~~~~~~~g~~~~~rr~~~~~~~~~~--------~~~~~~~d~~~~~~~~~~g~~i~~~p~~-~~~~~ 217 (242)
..... .+ .+-..+.|.+.++|++++.++++.. ......||.+...++.++||++.++|.. ..+-.
T Consensus 278 y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~ee 357 (691)
T PRK05454 278 YGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSYEE 357 (691)
T ss_pred HHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcccccccc
Confidence 11100 01 1233356777899999999985432 2355788999999999999999999984 33323
Q ss_pred CCCccc-chHHHHHHHHHHHHHh
Q 026146 218 FGSSKL-GGSEIVEYLKGLLYLL 239 (242)
Q Consensus 218 ~~~s~~-~~~~~~~~~~~~~~~~ 239 (242)
...+-. -.++..||.++.++.+
T Consensus 358 ~P~tl~~~~~qr~RW~~G~lQ~l 380 (691)
T PRK05454 358 LPPNLLDELKRDRRWCQGNLQHL 380 (691)
T ss_pred CCCCHHHHHHHHHHHHhchHHHH
Confidence 233322 2366777777766644
No 54
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.90 E-value=2.4e-22 Score=173.06 Aligned_cols=203 Identities=14% Similarity=0.085 Sum_probs=144.3
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYI 85 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n 85 (242)
...|++||+||+|||+..+.++++++.....++++||+++++++++.|.+.++++.+.+|...+.+...+.|.||+.|+|
T Consensus 60 ~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN 139 (727)
T PRK11234 60 PDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCARPGPTSKADCLN 139 (727)
T ss_pred CCCCCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCCCCCCCHHHHHH
Confidence 35689999999999999999999998644344689999999988888999999999988754333444455789999999
Q ss_pred HHHhhc-------C--CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH--H--
Q 026146 86 HGLKHA-------S--GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN--V-- 152 (242)
Q Consensus 86 ~g~~~a-------~--~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 152 (242)
.|++.+ . .+.+++.|+|+.++|++|. ++..+.+ +.+++.+.....+.. ...+........+. .
T Consensus 140 ~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~-~~~~VQ~p~~p~~~~--~~~~~~~~~~~EFa~~~~~ 215 (727)
T PRK11234 140 NVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVE-RKDLIQIPVYPFERE--WTHFTSGTYIDEFAELHGK 215 (727)
T ss_pred HHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcC-CCCeEeecccCCCcc--HHHHHHHHHHHHHHHHhhh
Confidence 999987 2 3668889999999999998 5666654 347777754421111 11111111111111 0
Q ss_pred --HHHHHhCCCccccccchhhc-ch--HHHHHhh-h-cccCCCcccchHHHHHHHHcCCceEEeeeee
Q 026146 153 --LAQTLLWPGVSDLTGSFRLY-KK--SVLEDVI-S-SCVSKGYVFQMEMIVRACRKGYHIEEVPITF 213 (242)
Q Consensus 153 --~~~~~~~~~~~~~~g~~~~~-rr--~~~~~~~-~-~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~ 213 (242)
......+ +.....|.+++| || +++.++| + ........||+++++++.+.|+++.++|..+
T Consensus 216 ~~~~~~~lg-g~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v 282 (727)
T PRK11234 216 DVPVREALA-GQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPV 282 (727)
T ss_pred hhHHHHHcC-CCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEccccc
Confidence 1111122 233567777889 66 4677775 4 3567788999999999999999999999544
No 55
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.86 E-value=6.5e-20 Score=156.39 Aligned_cols=200 Identities=14% Similarity=0.089 Sum_probs=138.2
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
+.+.+||+||+|||++.+.++++++.+...+++++|+|+....+.+|.+.++++...+|..++..+.++++.||+.|+|.
T Consensus 69 ~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~ 148 (703)
T PRK15489 69 DEQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFVGTYPNDAETITEVERMRRRYKRLVRVEVPHDGPTCKADCLNW 148 (703)
T ss_pred CCCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEEEecCCCccHHHHHHHHhccCCcEEEEEcCCCCCCCHHHHHHH
Confidence 45899999999999999999999986544557899999654455589999999988776333333344556889999999
Q ss_pred HHhhc-------CC--CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH------
Q 026146 87 GLKHA-------SG--SFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN------ 151 (242)
Q Consensus 87 g~~~a-------~~--d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------ 151 (242)
|++.+ .+ +.+++.|+|+.++|+.|..+ ..+.. +.+++.++...... ...++........+.
T Consensus 149 ~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~-~~~~iQ~pV~~~~~--~~~~~l~~~~~~Efa~~~~~~ 224 (703)
T PRK15489 149 IIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLP-RKDLVQLPVLSLER--KWYEWVAGTYMDEFAEWHQKD 224 (703)
T ss_pred HHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcC-CcceeeeeeccCCC--ccccHHHHHHHHHHHHHhhhH
Confidence 99886 23 34899999999999999765 54443 44777765433221 112333222211111
Q ss_pred HHHHHHhCCCccccccchhhcchHHHHHh---hhc--ccCCCcccchHHHHHHHHcCCceEEeee
Q 026146 152 VLAQTLLWPGVSDLTGSFRLYKKSVLEDV---ISS--CVSKGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~rr~~~~~~---~~~--~~~~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
...+...+..+ ...|..++|||++++++ |+. .......||+|+.+|+.+.|+++.++-.
T Consensus 225 l~~r~~l~~~i-pl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~ 288 (703)
T PRK15489 225 LVVRESLTGTV-PSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRF 288 (703)
T ss_pred HHHHHHcCCce-eccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEE
Confidence 11121222233 46777789999999987 443 3456779999999999999999988433
No 56
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.84 E-value=3.2e-20 Score=141.52 Aligned_cols=106 Identities=27% Similarity=0.246 Sum_probs=92.2
Q ss_pred cEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHh
Q 026146 10 KYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLK 89 (242)
Q Consensus 10 ~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~ 89 (242)
+|||+||+||+++.|++||+|+..|. .|||||||||+|+|.++++++ .++++.. .+.|.+.++|.|++
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~----~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~~~n~~~~ 68 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV----DEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGAQRNFALE 68 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc----CEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHHHHHHHHH
Confidence 48999999999999999999998763 299999999999999988854 3566666 78899999999999
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
.|++|||+++|+|..+++++++.+.+.+.+++......
T Consensus 69 ~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (229)
T cd02511 69 LATNDWVLSLDADERLTPELADEILALLATDDYDGYYV 106 (229)
T ss_pred hCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEE
Confidence 99999999999999999999999999987655444433
No 57
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.83 E-value=2.5e-19 Score=127.52 Aligned_cols=152 Identities=28% Similarity=0.432 Sum_probs=125.9
Q ss_pred EEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 13 IIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 13 iiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
|+||++|+.+.+..+++++.++.. ...+++|+||++++.+.+.+.++.+.. ..+..+....+.|.+.++|.+++.+.
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 77 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTY-PNFEVIVVDDGSTDGTLEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKAAR 77 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCc-cceEEEEEeCCCCccHHHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHHhc
Confidence 689999999999999999998854 578999999999999999888876541 24666777888999999999999999
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHH-hcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhh
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQL-ETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRL 171 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 171 (242)
+|+++++|+|..++++++..++.... .++.+++.+. ++++
T Consensus 78 ~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------------------~~~~ 118 (156)
T cd00761 78 GEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP---------------------------------------GNLL 118 (156)
T ss_pred CCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc---------------------------------------chhe
Confidence 99999999999999999999855444 3456666654 5668
Q ss_pred cchHHHHHhhhcccC-CCcccchHHHHHHHHcCCce
Q 026146 172 YKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHI 206 (242)
Q Consensus 172 ~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i 206 (242)
++++.+++++++... ..+++|.+++.++...|..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 119 FRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVA 154 (156)
T ss_pred eeHHHHHHhCCcchHhcCCcchHHHHHHHHhhcccc
Confidence 999999999877553 34478999999998888654
No 58
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.79 E-value=2.1e-18 Score=130.67 Aligned_cols=106 Identities=37% Similarity=0.532 Sum_probs=94.0
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHG 87 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g 87 (242)
+|++|||||+||+++.+..+|+|+.+|+.. ++|||||||||+|+|.++++++.+.. ..+.......|.|.+.++|.|
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~-~~eiivvddgs~d~t~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~ 78 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYK-DFEIIVVDDGSTDGTTEIAIEYGAKD--VRVIRLINERNGGLGAARNAG 78 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhc-ceEEEEEeCCCCCChHHHHHHHhhhc--ceEEEeecccCCChHHHHHhh
Confidence 589999999999999999999999999763 58999999999999999999987654 246666778899999999999
Q ss_pred HhhcCCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 88 LKHASGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 88 ~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
+..+.+++++++|+|+. .+..+..+....
T Consensus 79 ~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 79 LEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 99999999999999999 988888855444
No 59
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7.4e-18 Score=131.03 Aligned_cols=206 Identities=18% Similarity=0.200 Sum_probs=147.0
Q ss_pred CCCCcEEEEEeCcccc-ccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHH
Q 026146 6 KNKNKYSIIIPTYNER-LNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTA 83 (242)
Q Consensus 6 ~~~~~isiiip~~n~~-~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a 83 (242)
..+|.-||||..+|++ ..|.+++.|++.+... ---|||+|||+|.|.+ ..+.+.+ .++++++++.++-|.-.+
T Consensus 121 ~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe--d~~~L~r---i~kvr~LRN~~ReGLirS 195 (559)
T KOG3738|consen 121 VDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE--DGKLLKR---IPKVRVLRNNEREGLIRS 195 (559)
T ss_pred cCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH--HHHHHhh---hheeeeecccchhhhhhh
Confidence 3568899999999976 5678899999988654 3459999999999743 2333322 247999999999999999
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecC-------------CccCchhhHHHHH-hH
Q 026146 84 YIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSG-------------GVHGWNLMRKLTS-RG 149 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~-------------~~~~~~~~~~~~~-~~ 149 (242)
++.|.+.|++.++.|||+.+++..+||+.+++.+.++...+|......-+. +.+.|++.-+... ..
T Consensus 196 RvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLhF~We~~~~ 275 (559)
T KOG3738|consen 196 RVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFDWSLHFKWEQMQL 275 (559)
T ss_pred hccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcceEEEEEehhcCH
Confidence 999999999999999999999999999999999987555555442221111 1222222111110 01
Q ss_pred HHHHHH--HHhCCCccccccchhhcchHHHHHhhhcccCCC-c-ccchHHHHHHHHcCCceEEeeeeeeec
Q 026146 150 ANVLAQ--TLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKG-Y-VFQMEMIVRACRKGYHIEEVPITFVDR 216 (242)
Q Consensus 150 ~~~~~~--~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~-~-~~d~~~~~~~~~~g~~i~~~p~~~~~~ 216 (242)
.+...+ .......+.+.||.+++.|+-|.++|.|+.... | +|.+|+++|++.-|..+..+|.+.+-|
T Consensus 276 eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRVGH 346 (559)
T KOG3738|consen 276 EQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRVGH 346 (559)
T ss_pred HHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccchhh
Confidence 111111 011223456789999999999999998865433 3 678999999999999999999665443
No 60
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.4e-18 Score=140.91 Aligned_cols=212 Identities=18% Similarity=0.176 Sum_probs=156.7
Q ss_pred CCCCcEEEEEeCcccc-ccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCC-hHHHHHHHHHHhCCCcEEEeeCCCCcchHH
Q 026146 6 KNKNKYSIIIPTYNER-LNIALIVYLIFKHLRD-VDFEIIVVDDGSPDG-TQEVVKQLQQLYGEDRILLRPRPKKLGLGT 82 (242)
Q Consensus 6 ~~~~~isiiip~~n~~-~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~-t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (242)
...|..||||+.+|+. ..+.+++.|+...+.. .--|||+|||.|+.+ ....++++.+.+. .+++++.+.+.|.-.
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~R~GLIr 216 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKKREGLIR 216 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecchhhhHH
Confidence 3579999999999976 5557889998887654 346999999999765 3666888888876 399999999999999
Q ss_pred HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCC-------------ccCchhhHHHHHhH
Q 026146 83 AYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGG-------------VHGWNLMRKLTSRG 149 (242)
Q Consensus 83 a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~~~~~~~~~ 149 (242)
|+..|...|+||.+.|+|+-+++..+|++.+++.+.++...++......-+.. ...|.+........
T Consensus 217 ARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP 296 (578)
T KOG3736|consen 217 ARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFDWELTFKWERLP 296 (578)
T ss_pred HHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceeeeecceeEEeccCC
Confidence 99999999999999999999999999999999999886666666533222211 11111111100111
Q ss_pred HHHHHHHH---hCCCccccccchhhcchHHHHHhhhcccCCCc--ccchHHHHHHHHcCCceEEeeeeeeeccCC
Q 026146 150 ANVLAQTL---LWPGVSDLTGSFRLYKKSVLEDVISSCVSKGY--VFQMEMIVRACRKGYHIEEVPITFVDRVFG 219 (242)
Q Consensus 150 ~~~~~~~~---~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~--~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~ 219 (242)
.....+.. .....+...||.+++.|+.|.++|.+++.... +|.+||++|+++-|.++..+|.+.+.|.+.
T Consensus 297 ~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGHifR 371 (578)
T KOG3736|consen 297 LPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGHIFR 371 (578)
T ss_pred ccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceeeeee
Confidence 11111110 11124567889999999999999999774433 678999999999999999999777665544
No 61
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.69 E-value=3.3e-16 Score=113.80 Aligned_cols=134 Identities=20% Similarity=0.255 Sum_probs=103.8
Q ss_pred chHHHHHHHHhh-cCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHH
Q 026146 79 GLGTAYIHGLKH-ASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTL 157 (242)
Q Consensus 79 g~~~a~n~g~~~-a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (242)
+|..++..+++. +++|+++++|+|..++|++|.+++..+++++.++|.+.....+.. .+................
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR----GFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc----CHHHHHHHHHHhHHHHHH
Confidence 488888899998 999999999999999999999999999888899998866654433 333333322222222211
Q ss_pred h-CCCccccccchhhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeeeeeeec
Q 026146 158 L-WPGVSDLTGSFRLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPITFVDR 216 (242)
Q Consensus 158 ~-~~~~~~~~g~~~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~ 216 (242)
. ..+.....|++|++||++++++|++.. ...++||+.+..++.+.|+++...|....+.
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~ 153 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQT 153 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeec
Confidence 1 235666889999999999999998865 5677999999999999999999999765543
No 62
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.5e-16 Score=123.64 Aligned_cols=211 Identities=17% Similarity=0.176 Sum_probs=150.8
Q ss_pred CCCCcEEEEEeCcccc-ccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCC-hHHHHHHHHHHhCCCcEEEeeCCCCcchHH
Q 026146 6 KNKNKYSIIIPTYNER-LNIALIVYLIFKHLRD-VDFEIIVVDDGSPDG-TQEVVKQLQQLYGEDRILLRPRPKKLGLGT 82 (242)
Q Consensus 6 ~~~~~isiiip~~n~~-~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~-t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (242)
.+.|+.||||+.+|+. ..|.+++.|+...... --.|||.|||-|+.+ ..+.+.++...++ ..+++++++++-|.-.
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~fn-GlVkV~Rne~REGLI~ 230 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLFN-GLVKVFRNERREGLIQ 230 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHhc-CEEEEEecchhhhhhh
Confidence 3568999999999965 6778999999877544 345899999998654 7788888888886 4789999999999999
Q ss_pred HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEee-c---------CC--------ccCchhhHH
Q 026146 83 AYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVR-S---------GG--------VHGWNLMRK 144 (242)
Q Consensus 83 a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~---------~~--------~~~~~~~~~ 144 (242)
|+..|.++|.|+.++|||+.+.+..+|+..|+..+..+...+-+. .... + .+ ...|.+.-+
T Consensus 231 aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP-~IDgId~n~~EyrpvyG~dn~h~rGifeWgmLyK 309 (603)
T KOG3737|consen 231 ARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVP-LIDGIDGNTYEYRPVYGGDNDHARGIFEWGMLYK 309 (603)
T ss_pred hhccchhhccccEEEEEecceeeecccccccccccccCceEEEEe-eeeeecCCceEEeeccCCcchhhcchhhhhheec
Confidence 999999999999999999999999999999999987644333222 1110 0 00 111111000
Q ss_pred HHH-hHHHHHHHHHh--CCCccccccchhhcchHHHHHhhhcccCCC-c-ccchHHHHHHHHcCCceEEeeeeeeeccC
Q 026146 145 LTS-RGANVLAQTLL--WPGVSDLTGSFRLYKKSVLEDVISSCVSKG-Y-VFQMEMIVRACRKGYHIEEVPITFVDRVF 218 (242)
Q Consensus 145 ~~~-~~~~~~~~~~~--~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~-~-~~d~~~~~~~~~~g~~i~~~p~~~~~~~~ 218 (242)
-.. .......+... ...-+...|+.++|.|+.|.++|.+++..- | +|.+|++++.++-|.++..+|.+.+-|.+
T Consensus 310 e~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSrVGHvY 388 (603)
T KOG3737|consen 310 EVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSRVGHVY 388 (603)
T ss_pred cCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccccchhh
Confidence 000 00000011111 112345678888999999999998876443 3 67899999999999999999977655443
No 63
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.60 E-value=5.8e-15 Score=114.15 Aligned_cols=202 Identities=19% Similarity=0.182 Sum_probs=151.0
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcch---HHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGL---GTA 83 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~---~~a 83 (242)
..|.||||.|...-++++...+++-....+ +.+|++.|-+.++|+..+.++++.++||....++.-..+..|. -.+
T Consensus 83 ~LPgVSiikPl~G~d~nl~~Nlesffts~Y-~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN 161 (431)
T KOG2547|consen 83 KLPGVSIIKPLKGVDPNLYHNLESFFTSQY-HKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINN 161 (431)
T ss_pred CCCCceEEeecccCCchhHHhHHHHHhhcc-CceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEcccccccChhhhc
Confidence 579999999999999999999999877655 5999999999999999999999999999888888887777774 334
Q ss_pred HHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhc-CCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHh-C--
Q 026146 84 YIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLET-GASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLL-W-- 159 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-- 159 (242)
.--|.+.|+.|+|+|.|+|..+.||-+-.+...++.+ .-+.|.+.++....+.....+...+.. ....+... +
T Consensus 162 ~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~Gf~atle~~~fg---Tsh~r~yl~~n~ 238 (431)
T KOG2547|consen 162 MMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQGFDATLEQVYFG---TSHPRIYLSGNV 238 (431)
T ss_pred cCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeeccccchhhhhheeec---cCCceEEEcccc
Confidence 4468899999999999999999999999999888753 456677777765544322222221100 00000001 1
Q ss_pred CCccccccchhhcchHHHHHhhhcccCCCc-ccchHHHHHHHHcCCceEEeeee
Q 026146 160 PGVSDLTGSFRLYKKSVLEDVISSCVSKGY-VFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 160 ~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~-~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
.++...+|...++||+++++.||......+ .||+-+.......|++.......
T Consensus 239 ~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~p 292 (431)
T KOG2547|consen 239 LGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHP 292 (431)
T ss_pred ccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 123345666678999999999887665444 78988888899999997766533
No 64
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.54 E-value=7.8e-14 Score=103.59 Aligned_cols=136 Identities=21% Similarity=0.248 Sum_probs=95.4
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhH---HHHHHH-H-HhCCCccccccch
Q 026146 95 FVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRG---ANVLAQ-T-LLWPGVSDLTGSF 169 (242)
Q Consensus 95 ~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~-~~~~~~~~~~g~~ 169 (242)
||+++|+|+.++++++++++..+++++.+++.+.....+.+ ++........ ...... . ..........|++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 76 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRG----SLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSG 76 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCC----ChhheeehhhhhhhhhhhHHHHHhcCCCccccCcc
Confidence 68999999999999999999999866888888877764322 1111111111 111111 1 1122344467888
Q ss_pred hhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccc-hHHHHHHHHH
Q 026146 170 RLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLG-GSEIVEYLKG 234 (242)
Q Consensus 170 ~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~-~~~~~~~~~~ 234 (242)
+++|+++++++|+++.....+||.+++.++.++|+++.++|....++..+.+-.. .++..||.++
T Consensus 77 ~~~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 142 (193)
T PF13632_consen 77 MLFRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARG 142 (193)
T ss_pred eeeeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhh
Confidence 9999999999988775667789999999999999999999988666655444322 3566667666
No 65
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.52 E-value=8e-14 Score=104.65 Aligned_cols=175 Identities=18% Similarity=0.243 Sum_probs=97.7
Q ss_pred EEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhh
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKH 90 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~ 90 (242)
||||+++ |.+..+.+|++++.++.. ++.+.|-+++- ....+.+.++|.|+++
T Consensus 1 isiI~c~-n~~~~~~~~~~~i~~~~~-~~~~~i~i~~~--------------------------~~~~s~~~~yN~a~~~ 52 (217)
T PF13712_consen 1 ISIIICV-NDEELYEECLRSIKRLIG-PPGELIEIDNV--------------------------RNAKSMAAAYNEAMEK 52 (217)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHHHTT---TEEEEEEE-S--------------------------SS-S-TTTHHHHHGGG
T ss_pred CEEEEEE-CCHHHHHHHHHHHHhhCC-CCceEEEEecc--------------------------CCCcCHHHHHHHHHHh
Confidence 4666655 556778889999987743 56777777663 1125789999999999
Q ss_pred cCCCEEEEEeCCCCC-CCCChHHHHHHHHh-cCCcEEE--EEEEeecCCc--cCc-------hhhHHHHHhHHHHHHHH-
Q 026146 91 ASGSFVVIMDADLSH-HPKYLPSFIKKQLE-TGASIVT--GTRYVRSGGV--HGW-------NLMRKLTSRGANVLAQT- 156 (242)
Q Consensus 91 a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~-~~~~~v~--~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~~- 156 (242)
|+++|++|+++|..+ +++|+..+++.+++ ++.+++. |+......+. ... ...+.............
T Consensus 53 a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 132 (217)
T PF13712_consen 53 AKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWESPNKVGKVREYGRIMHGHGPNSAGEVR 132 (217)
T ss_dssp --SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS---EEEEEETTEEEE----E---------
T ss_pred CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCccccccccccccccccccccccccccccccc
Confidence 999999999999995 68999999999954 3444432 3333322110 000 00000000000000000
Q ss_pred ------HhCCCccccccchhhcchHHHHHhhhcccC--CCc-ccchHHHHHHHHcCCceEEeeeeeeecc
Q 026146 157 ------LLWPGVSDLTGSFRLYKKSVLEDVISSCVS--KGY-VFQMEMIVRACRKGYHIEEVPITFVDRV 217 (242)
Q Consensus 157 ------~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~--~~~-~~d~~~~~~~~~~g~~i~~~p~~~~~~~ 217 (242)
.....+..+-|.+++++++++ +|++. .+| ..|+++|+++.++|+++...|....|..
T Consensus 133 ~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v~~~~~~~~H~s 198 (217)
T PF13712_consen 133 YGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRVVVPPPWCIHFS 198 (217)
T ss_dssp ----ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EEEE-----EE-S
T ss_pred ccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEEEecCceEEEcC
Confidence 123456778899999999999 45554 555 6799999999999999966665544443
No 66
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.49 E-value=5.8e-13 Score=105.07 Aligned_cols=106 Identities=20% Similarity=0.302 Sum_probs=81.7
Q ss_pred EEEEEeCccccccHHHHHHHHHhhh-cCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC----CC--------
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHL-RDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP----KK-------- 77 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~-~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~----~~-------- 77 (242)
+.|+|++||+.+.+.++|++|++|. ....++|||.+||+.+++.+.++.+. ..++++... .+
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~~-----~~i~~i~~~~~~~~~~~~~~~~~ 76 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSFG-----DGVTHIQHPPISIKNVNPPHKFQ 76 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhhc-----cccEEEEcccccccccCcccccc
Confidence 5799999999999999999999984 22578999999999888888777762 134455432 12
Q ss_pred --cchHH----HHHHHHhhcCCCEEEEEeCCCCCCCCCh---HHHHHHHHhcC
Q 026146 78 --LGLGT----AYIHGLKHASGSFVVIMDADLSHHPKYL---PSFIKKQLETG 121 (242)
Q Consensus 78 --~g~~~----a~n~g~~~a~~d~i~~lD~D~~~~~~~l---~~l~~~~~~~~ 121 (242)
.+.+. |+|.++....++++++|++|+.+.|+++ +.++..+++.+
T Consensus 77 ~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~ 129 (334)
T cd02514 77 GYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDP 129 (334)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCC
Confidence 12233 8999998889999999999999999955 66666666543
No 67
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.08 E-value=4.3e-09 Score=78.01 Aligned_cols=150 Identities=14% Similarity=0.097 Sum_probs=101.0
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
.+++||||-+++.+.|...+.-+..-+.. -++.|+|++.-.. ..+.++..+|.
T Consensus 2 ~~~aiivpyr~R~~~l~~~l~~~~~~L~rq~~~~~i~vi~Q~~~-------------------------~~FNR~~llNv 56 (219)
T cd00899 2 HKVAIIVPFRNRFEHLLIFLPHLHPFLQRQQLDYRIFVIEQVGN-------------------------FRFNRAKLLNV 56 (219)
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEEecCC-------------------------ccchhhhhhhH
Confidence 47999999999999988877766544332 5678888875321 12456677888
Q ss_pred HHhhc----CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCc
Q 026146 87 GLKHA----SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGV 162 (242)
Q Consensus 87 g~~~a----~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (242)
|+..| ..++++|-|.|..+..+...- .+.+.+.-+..+ ... .....+.
T Consensus 57 G~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~H~s~~--~~~-----------------------~~~~lpy 108 (219)
T cd00899 57 GFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPRHLSVP--LDK-----------------------FHYKLPY 108 (219)
T ss_pred HHHHHhhcCCccEEEEecccccccCccccc---cCCCCCeEEEEe--ecc-----------------------cccccCc
Confidence 77666 358899999998877776331 222211111111 100 0001112
Q ss_pred cccccchhhcchHHHHHhhhccc-CCCc-ccchHHHHHHHHcCCceEEeee
Q 026146 163 SDLTGSFRLYKKSVLEDVISSCV-SKGY-VFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 163 ~~~~g~~~~~rr~~~~~~~~~~~-~~~~-~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
....||+++++++-+.+++|+++ ..+| +||.||..|+..+|+++...+.
T Consensus 109 ~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~ 159 (219)
T cd00899 109 KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSG 159 (219)
T ss_pred ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccC
Confidence 24578899999999999988866 5577 4899999999999999998873
No 68
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.03 E-value=1e-08 Score=85.57 Aligned_cols=222 Identities=17% Similarity=0.195 Sum_probs=136.1
Q ss_pred cEEEEEeCccc-cccHHHHHHHHHhhhcC-CCeEEEEEeCC------CCCChHHHHHHHHHHh------C----------
Q 026146 10 KYSIIIPTYNE-RLNIALIVYLIFKHLRD-VDFEIIVVDDG------SPDGTQEVVKQLQQLY------G---------- 65 (242)
Q Consensus 10 ~isiiip~~n~-~~~l~~~l~sl~~~~~~-~~~eiivvd~~------s~d~t~~~l~~~~~~~------~---------- 65 (242)
.+-..+|+||| ++.|+.+|+||..+.++ .+--|+||.|| .+..|.+++.+....+ |
T Consensus 26 ~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (527)
T PF03142_consen 26 FVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEPLSYVSLGE 105 (527)
T ss_pred eEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCCcceEEecc
Confidence 45668999995 57889999999888665 22235555555 2345888877665511 0
Q ss_pred ------------------C------------CcEEEee----------CCCCcchHHHHHHHHhh---------------
Q 026146 66 ------------------E------------DRILLRP----------RPKKLGLGTAYIHGLKH--------------- 90 (242)
Q Consensus 66 ------------------~------------~~~~~~~----------~~~~~g~~~a~n~g~~~--------------- 90 (242)
+ +-+.+++ .++|.||-.+.-..+..
T Consensus 106 g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~~~~~~~~~ 185 (527)
T PF03142_consen 106 GSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFNNPMTPLEL 185 (527)
T ss_pred CchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcCCCCchHHH
Confidence 1 1234444 57788875544333321
Q ss_pred --------------cCCCEEEEEeCCCCCCCCChHHHHHHHHhc-CCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHH
Q 026146 91 --------------ASGSFVVIMDADLSHHPKYLPSFIKKQLET-GASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQ 155 (242)
Q Consensus 91 --------------a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (242)
...||++.+|+|+.+.|+.+..++..+.++ +..++.|.....+.+..-+.+...+.....+.+.+
T Consensus 186 e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l~K 265 (527)
T PF03142_consen 186 ELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHLQK 265 (527)
T ss_pred HHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHHHH
Confidence 124999999999999999999999998754 45555664333333322233333333333344333
Q ss_pred ---HHhCCCccccccchhhcchHHHHH-------------h-hhc---------cc-CCCcccchHHHHHHHHc--CCce
Q 026146 156 ---TLLWPGVSDLTGSFRLYKKSVLED-------------V-ISS---------CV-SKGYVFQMEMIVRACRK--GYHI 206 (242)
Q Consensus 156 ---~~~~~~~~~~~g~~~~~rr~~~~~-------------~-~~~---------~~-~~~~~~d~~~~~~~~~~--g~~i 206 (242)
...+ .+..+.||+.++|-++++. + ..+ .. ...++||-.++.-+.+. |+++
T Consensus 266 a~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~~~k~ 344 (527)
T PF03142_consen 266 AFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFPGYKT 344 (527)
T ss_pred HHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCCCceE
Confidence 3333 5777889998988777654 1 111 11 13579999999877777 7899
Q ss_pred EEeeeeeeeccCCCcccch-HHHHHHH
Q 026146 207 EEVPITFVDRVFGSSKLGG-SEIVEYL 232 (242)
Q Consensus 207 ~~~p~~~~~~~~~~s~~~~-~~~~~~~ 232 (242)
.++|.+..+-..+++-..+ ++..||.
T Consensus 345 ~y~~~A~a~T~aP~t~~vflsQRRRWi 371 (527)
T PF03142_consen 345 EYVPSAVAYTDAPETFSVFLSQRRRWI 371 (527)
T ss_pred EEcccccccccCCccHHHHHHHhhhcc
Confidence 9999776654444432222 4444444
No 69
>PLN02893 Cellulose synthase-like protein
Probab=98.95 E-value=1.6e-08 Score=86.99 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=106.8
Q ss_pred CcEEEeeCCCCcc-----hHHHHHHHHhh----cCCCEEEEEeCCCCC-CCCChHHHHHHHHhc----CCcEEEEEEEee
Q 026146 67 DRILLRPRPKKLG-----LGTAYIHGLKH----ASGSFVVIMDADLSH-HPKYLPSFIKKQLET----GASIVTGTRYVR 132 (242)
Q Consensus 67 ~~~~~~~~~~~~g-----~~~a~n~g~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~----~~~~v~~~~~~~ 132 (242)
+.+.|+.++++.| |++|+|.+++. +++++|+.+|+|-.. +|+++.+.+-.+.++ +...|..+....
T Consensus 264 P~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~ 343 (734)
T PLN02893 264 PNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKLGYVQFPQIFH 343 (734)
T ss_pred CceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCceEEEeCccccc
Confidence 4789998886643 89999999996 679999999999995 689999999988754 344455444443
Q ss_pred cCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHH---------hhh---------------------
Q 026146 133 SGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLED---------VIS--------------------- 182 (242)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~---------~~~--------------------- 182 (242)
+..... .+... ....+......+-+.+-+...|.+.++||+++.. +..
T Consensus 344 ~i~~~D-~y~~~-~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 421 (734)
T PLN02893 344 GINKND-IYAGE-LKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAH 421 (734)
T ss_pred CCCcCC-CCcch-hHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhh
Confidence 322111 11111 1111122222233333344556666899999931 100
Q ss_pred ------cc-----------cCCCcccchHHHHHHHHcCCceEEee-eeeeeccCCCcccc----hHHHHHHHHHHHHHhh
Q 026146 183 ------SC-----------VSKGYVFQMEMIVRACRKGYHIEEVP-ITFVDRVFGSSKLG----GSEIVEYLKGLLYLLI 240 (242)
Q Consensus 183 ------~~-----------~~~~~~~d~~~~~~~~~~g~~i~~~p-~~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~ 240 (242)
+. ......||....++++.+||+.+|++ ..... .|.+..+ ..+..||..+.+++.+
T Consensus 422 ~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af--~G~aP~~l~~~l~Q~~RWa~G~lqI~~ 499 (734)
T PLN02893 422 HVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAF--LGDSPINLHDVLNQQKRWSVGLLEVAF 499 (734)
T ss_pred hccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhh--ccCCCCCHHHHHHHHHHHHhhhHHHHh
Confidence 00 11223789999999999999999985 22211 1333322 3778888888888876
Q ss_pred c
Q 026146 241 T 241 (242)
Q Consensus 241 ~ 241 (242)
.
T Consensus 500 s 500 (734)
T PLN02893 500 S 500 (734)
T ss_pred h
Confidence 4
No 70
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.85 E-value=4.4e-07 Score=68.02 Aligned_cols=191 Identities=10% Similarity=0.004 Sum_probs=105.4
Q ss_pred CCcEEEEEeCcccccc--H-HHHHH--HHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCC--c-
Q 026146 8 KNKYSIIIPTYNERLN--I-ALIVY--LIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKK--L- 78 (242)
Q Consensus 8 ~~~isiiip~~n~~~~--l-~~~l~--sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~--~- 78 (242)
++++++|||.--..+. + .+.+. ++.+-..+ ..+++|++++.+.- ...++++....+ ++.++..... .
T Consensus 1 m~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~~--d~~i~~~i~~~~--~~~yl~~~s~~~F~ 76 (346)
T COG4092 1 MQPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEVM--DRLIRSYIDPMP--RVLYLDFGSPEPFA 76 (346)
T ss_pred CCCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchhH--HHHHHHHhcccc--ceEEEecCCCcccc
Confidence 4678999999764322 1 22222 11112122 56788888886522 144555554433 6777773322 2
Q ss_pred chHHHHHHHHhhcC----CCEEEEEeCCCCCCCCChHHHHHHHH----hcCC--cEEEEEEEeecCCccC--chhhHHHH
Q 026146 79 GLGTAYIHGLKHAS----GSFVVIMDADLSHHPKYLPSFIKKQL----ETGA--SIVTGTRYVRSGGVHG--WNLMRKLT 146 (242)
Q Consensus 79 g~~~a~n~g~~~a~----~d~i~~lD~D~~~~~~~l~~l~~~~~----~~~~--~~v~~~~~~~~~~~~~--~~~~~~~~ 146 (242)
..+...|.|+..+. +++++|+|.|+..+.+-++++++... .... -++.+. +..+..... ..+...+.
T Consensus 77 s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV-~~LNk~~~~v~f~~~d~f~ 155 (346)
T COG4092 77 SETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPV-YHLNKADTQVFFDVEDMFL 155 (346)
T ss_pred chhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeee-eecchhhhhHHHHHHHHhh
Confidence 34778888888875 89999999999999777777775432 1233 234433 333322100 11111111
Q ss_pred HhHHH--HHHHHHhC-CCccccccchhhcchHHHHHhhhcccC-CCc-ccchHHHHHHHHcC
Q 026146 147 SRGAN--VLAQTLLW-PGVSDLTGSFRLYKKSVLEDVISSCVS-KGY-VFQMEMIVRACRKG 203 (242)
Q Consensus 147 ~~~~~--~~~~~~~~-~~~~~~~g~~~~~rr~~~~~~~~~~~~-~~~-~~d~~~~~~~~~~g 203 (242)
..... .+...... .-.....++..++.|..+-..||+++. .++ +||.|+..|+...=
T Consensus 156 d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~~ 217 (346)
T COG4092 156 DAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLYI 217 (346)
T ss_pred hhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHHH
Confidence 11100 01110001 112334456668999999999998773 333 68999999876543
No 71
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.81 E-value=5.4e-07 Score=73.91 Aligned_cols=198 Identities=15% Similarity=0.166 Sum_probs=120.1
Q ss_pred CCcEEEEEeCcccc-----ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHH-----HHHHHh-CCCcEEEeeCCC
Q 026146 8 KNKYSIIIPTYNER-----LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVK-----QLQQLY-GEDRILLRPRPK 76 (242)
Q Consensus 8 ~~~isiiip~~n~~-----~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~-----~~~~~~-~~~~~~~~~~~~ 76 (242)
..+-.|++|+|||+ ..++.+.+|+.+.-...+|.+.|+.|..+.+ ....+ +++.+. ...++-|.+..+
T Consensus 143 ~hrTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~~~FD~FVLSDs~dpd-ialAEq~a~~~l~~e~~g~~~ifYRrRr~ 221 (736)
T COG2943 143 LHRTAILMPIYNEDVNRVFAGLRATYESLAATGHAEHFDFFVLSDSRDPD-IALAEQKAWAELCRELGGEGNIFYRRRRR 221 (736)
T ss_pred ccceeEEeeccccCHHHHHHHHHHHHHHHHhhCCcccceEEEEcCCCCch-hhhhHHHHHHHHHHHhCCCCceeeehHhh
Confidence 34589999999986 3456777888666444789999998854433 32222 233332 234677777777
Q ss_pred Ccc-hHHHHHHHHhh--cCCCEEEEEeCCCCCCCCChHHHHHHHHhc-CCcEEEEEEEeecCCccCchhhHHHHHhHHHH
Q 026146 77 KLG-LGTAYIHGLKH--ASGSFVVIMDADLSHHPKYLPSFIKKQLET-GASIVTGTRYVRSGGVHGWNLMRKLTSRGANV 152 (242)
Q Consensus 77 ~~g-~~~a~n~g~~~--a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (242)
|.+ |+++...=... +.++|++++|+|.++..+.+.++++.++.+ +++++.......+.. .+..+........
T Consensus 222 n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~----TL~AR~qQFatrv 297 (736)
T COG2943 222 NVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGD----TLYARCQQFATRV 297 (736)
T ss_pred hhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcc----hHHHHHHHHHHHH
Confidence 766 44444333333 357999999999999999999999999864 566666544444432 3322222211111
Q ss_pred --------HHHHHhCCCccccccchhhcchHHHHHhhhccc---CCC-----cccchHHHHHHHHcCCceEEeeee
Q 026146 153 --------LAQTLLWPGVSDLTGSFRLYKKSVLEDVISSCV---SKG-----YVFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 153 --------~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~---~~~-----~~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
+.-+..++ +.+.|-+.+||.++|-+.-+... ... .+.|.-=..-+++.|+.+-..|+.
T Consensus 298 YGpl~~~GLawW~~~E--s~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL 371 (736)
T COG2943 298 YGPLFTAGLAWWQLGE--SHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDL 371 (736)
T ss_pred hchHHhhhhHHHhccc--cccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccC
Confidence 11111222 23567788999999888733222 112 233544445568889988877743
No 72
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.56 E-value=1.7e-06 Score=73.18 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=125.5
Q ss_pred CCCcEEEEEeCccc-cccHHHHHHHHHhhhcC--CCeEEEEEeCCC-CCC-----hHHHHHHHHHHhCCCcEEEeeCC-C
Q 026146 7 NKNKYSIIIPTYNE-RLNIALIVYLIFKHLRD--VDFEIIVVDDGS-PDG-----TQEVVKQLQQLYGEDRILLRPRP-K 76 (242)
Q Consensus 7 ~~~~isiiip~~n~-~~~l~~~l~sl~~~~~~--~~~eiivvd~~s-~d~-----t~~~l~~~~~~~~~~~~~~~~~~-~ 76 (242)
+...|.||+|..++ .+.+...++...+.... .+..++||..++ .|. ..+.++++..+++..++.++... +
T Consensus 245 ~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~i~~~~~ 324 (499)
T PF05679_consen 245 ESTRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKWISVKTG 324 (499)
T ss_pred CCCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEEEEecCC
Confidence 45789999999998 88888888887665322 455666665554 221 23477788888888899999987 8
Q ss_pred CcchHHHHHHHHhhcC-CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEee-cCCccCchhhHHHHHhHHHHHH
Q 026146 77 KLGLGTAYIHGLKHAS-GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVR-SGGVHGWNLMRKLTSRGANVLA 154 (242)
Q Consensus 77 ~~g~~~a~n~g~~~a~-~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 154 (242)
++..+.|+..|++... .+.++|+|.|..+++++|.+.-....+ +..+..+..+.. +........... ....
T Consensus 325 ~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~-g~qvy~PI~Fs~y~p~~~~~~~~~~----~~~~-- 397 (499)
T PF05679_consen 325 EFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP-GKQVYFPIVFSQYNPDIVYAGKPPE----PDQF-- 397 (499)
T ss_pred CccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc-CcEEEEeeeccccCCcccccCCCCc----cccC--
Confidence 8899999999999764 678899999999999999998776543 444444433321 111100000000 0000
Q ss_pred HHHhCCCccc--cccchhhcchHHHHHh--hhccc-CCCc-ccchHHHHHHHHcC--CceEEeeeee
Q 026146 155 QTLLWPGVSD--LTGSFRLYKKSVLEDV--ISSCV-SKGY-VFQMEMIVRACRKG--YHIEEVPITF 213 (242)
Q Consensus 155 ~~~~~~~~~~--~~g~~~~~rr~~~~~~--~~~~~-~~~~-~~d~~~~~~~~~~g--~~i~~~p~~~ 213 (242)
......|... -.|-..+++.+ +.++ |++.. ..+| +||+++.-+..+.| ++|...+...
T Consensus 398 ~i~~~~G~w~~~gfg~~~~YksD-y~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~ 463 (499)
T PF05679_consen 398 DISKDTGFWRRFGFGMVCFYKSD-YMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPG 463 (499)
T ss_pred ccCCCCCccccCCCceEEEEhhh-hhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCC
Confidence 0001112211 12333345544 4555 44433 3444 68999999999999 8888887543
No 73
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=98.54 E-value=6.8e-07 Score=58.49 Aligned_cols=80 Identities=20% Similarity=0.130 Sum_probs=54.9
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc---h-HHHHHHHHhh-cC
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG---L-GTAYIHGLKH-AS 92 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g---~-~~a~n~g~~~-a~ 92 (242)
+|+...|+..|...... .--+++|+||+|+|+|.++++++ + .+.++....... . ...++...+. ..
T Consensus 1 rne~~~L~~wl~~~~~l---G~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLAL---GVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNALIERAFD 71 (97)
T ss_pred CChHHHHHHHHHHHHHc---CCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHHHHHhCCC
Confidence 57888899999988644 22379999999999999999886 2 344444333221 1 2233333334 36
Q ss_pred CCEEEEEeCCCCCC
Q 026146 93 GSFVVIMDADLSHH 106 (242)
Q Consensus 93 ~d~i~~lD~D~~~~ 106 (242)
++|++++|+|..+.
T Consensus 72 ~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 72 ADWVLFLDADEFLV 85 (97)
T ss_pred CCEEEEEeeeEEEe
Confidence 89999999998843
No 74
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=98.54 E-value=3.5e-07 Score=74.45 Aligned_cols=197 Identities=17% Similarity=0.253 Sum_probs=96.0
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC---------C
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP---------K 76 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~---------~ 76 (242)
..+.+-|+|.++|+...+.+||++|++.... ..+.|||-.||+...+.+.++++.. .+.+++.. .
T Consensus 91 ~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~~y~~-----~v~~i~~~~~~~i~~~~~ 165 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIKSYGD-----QVTYIQHPDFSPITIPPK 165 (434)
T ss_dssp ------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHHGGGG-----GSEEEE-S--S-----TT
T ss_pred CCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHHHhhh-----hheeeecCCcCCceeCcc
Confidence 3567889999999999999999999987433 4678999999988888887777632 23333321 1
Q ss_pred C------cchHHHHHHHHhh----cCCCEEEEEeCCCCCCCCChHHHHHHHH--hcCCcEEEEEEEeecCCccCchhhHH
Q 026146 77 K------LGLGTAYIHGLKH----ASGSFVVIMDADLSHHPKYLPSFIKKQL--ETGASIVTGTRYVRSGGVHGWNLMRK 144 (242)
Q Consensus 77 ~------~g~~~a~n~g~~~----a~~d~i~~lD~D~~~~~~~l~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~ 144 (242)
. .+.+.-+-.|+.. -..+.++++.+|..+.|++++=+...+. +.+..+.+-+.+..++. .. +...
T Consensus 166 ~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNdnG~-~~--~~~~ 242 (434)
T PF03071_consen 166 EKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWNDNGK-EH--FVDD 242 (434)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--TT-B-GG--GS-T
T ss_pred cccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccccCCc-cc--cccC
Confidence 1 1123333334333 2468999999999999998876554432 34555555555544332 00 0000
Q ss_pred HHHhHHHHHHHHHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHH--HHHcCCceEEeeeeeeeccCCCcc
Q 026146 145 LTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVR--ACRKGYHIEEVPITFVDRVFGSSK 222 (242)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~--~~~~g~~i~~~p~~~~~~~~~~s~ 222 (242)
.. ...+.+... ..|-.-+++|++++++...++.. + +|.++| ..+.|-.... |+.......|...
T Consensus 243 ~~-------~~~lyRsdf--fpglGWml~r~~w~el~~~Wp~~-~---WDdwmR~~~~rkgR~cIr-PeisRt~~fg~~G 308 (434)
T PF03071_consen 243 SR-------PSLLYRSDF--FPGLGWMLTRELWDELEPKWPKA-F---WDDWMRQPEQRKGRQCIR-PEISRTYHFGKKG 308 (434)
T ss_dssp T--------TT-EEEESS-----SSEEEEHHHHHHHGGG--SS-----HHHHHTSHHHHTT-EEEE-ESSBSEEE--SSS
T ss_pred CC-------ccceEeccc--CCchHHHhhHHHHHhhcccCCCC-C---chhhhcCccccCCCceee-ccCCCccccCcCC
Confidence 00 001111111 22333379999999986554432 2 344444 5666644444 5333223345555
Q ss_pred cch
Q 026146 223 LGG 225 (242)
Q Consensus 223 ~~~ 225 (242)
.+.
T Consensus 309 ~s~ 311 (434)
T PF03071_consen 309 VSN 311 (434)
T ss_dssp SS-
T ss_pred cch
Confidence 543
No 75
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=98.43 E-value=7.8e-06 Score=62.59 Aligned_cols=123 Identities=17% Similarity=0.154 Sum_probs=90.8
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCC--CChHHHHHHHHHHh--------CCCcEEEeeC
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSP--DGTQEVVKQLQQLY--------GEDRILLRPR 74 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~--d~t~~~l~~~~~~~--------~~~~~~~~~~ 74 (242)
.+.++|-|++|..|.+..+++.++.|.+.+++ ..+.+-++.+.++ |.|.+.++...+.. +...+.+++.
T Consensus 22 ~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 22 RNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred ccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 35689999999999999999999999999777 4677766666677 77888887554332 2235666664
Q ss_pred CCCc--c------------------hHHHHHHHHhhc---CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEE
Q 026146 75 PKKL--G------------------LGTAYIHGLKHA---SGSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRY 130 (242)
Q Consensus 75 ~~~~--g------------------~~~a~n~g~~~a---~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~ 130 (242)
+-.. | .+.|||..+..+ ..+||+++|+|.+ .+|+.++.++. ++.++++++++
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~----~~kdIivPn~~ 177 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA----HDKDIIVPNCW 177 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh----CCCCEEcccee
Confidence 3211 1 367778777776 3699999999998 56666666654 78899999887
Q ss_pred ee
Q 026146 131 VR 132 (242)
Q Consensus 131 ~~ 132 (242)
..
T Consensus 178 ~~ 179 (269)
T PF03452_consen 178 RR 179 (269)
T ss_pred ec
Confidence 76
No 76
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=98.37 E-value=3.3e-06 Score=66.33 Aligned_cols=201 Identities=13% Similarity=0.089 Sum_probs=124.7
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCC-CC--hHHHHHHHHHHhCCCcEEEeeCCCCcchHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSP-DG--TQEVVKQLQQLYGEDRILLRPRPKKLGLGT 82 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~-d~--t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 82 (242)
-..|.|.+++|...+...+.....+....-. .+.+++|+-=|++ ++ -.+.+..+.++++ ++.++...+.+..+.
T Consensus 226 i~~pgih~i~pl~gr~~~f~rf~q~~c~~~d-~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~lngeFSRa~ 302 (494)
T KOG3588|consen 226 IEDPGIHMIMPLRGRAAIFARFAQSICARGD-DRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGLNGEFSRAK 302 (494)
T ss_pred ccCCCceEEEeccchHHHhhhhhHHHhccCC-CceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecccchhhhhH
Confidence 4568899999999998888877776544422 5677776655553 32 2234446666654 678887777788999
Q ss_pred HHHHHHhhcCCCE-EEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhh-HHHHHhHHHHHHHHHhCC
Q 026146 83 AYIHGLKHASGSF-VVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLM-RKLTSRGANVLAQTLLWP 160 (242)
Q Consensus 83 a~n~g~~~a~~d~-i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 160 (242)
|+-.|.+.-+.+. ++|+|.|..+..++|.+.-... ..+..+.++..+..-.. ..+. ........+.+. .....
T Consensus 303 aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr~Nt-~~gkqiyfPivFS~ynp---~ivy~~~~~~p~e~~~~-~~~~t 377 (494)
T KOG3588|consen 303 ALMVGAETLNANVLLFFCDVDIYFTTEFLNRCRLNT-ILGKQIYFPIVFSQYNP---EIVYEQDKPLPAEQQLV-IKKDT 377 (494)
T ss_pred HHHhhHHHhccceeEEEeccceeehHHHHHHHhhcc-CCCceEEEEEEEeecCc---ceeecCCCCCchhHhee-ecccc
Confidence 9999999987665 5667889989888888765443 24555555433322110 0000 000000011100 00111
Q ss_pred C-ccccccchhhcchHHHHHhhhccc-CCCc-ccchHHHHHHHHcCCceEEeeeeee
Q 026146 161 G-VSDLTGSFRLYKKSVLEDVISSCV-SKGY-VFQMEMIVRACRKGYHIEEVPITFV 214 (242)
Q Consensus 161 ~-~~~~~g~~~~~rr~~~~~~~~~~~-~~~~-~~d~~~~~~~~~~g~~i~~~p~~~~ 214 (242)
+ +-++.-|..|.-|+-|.++|||+. -.+| +||.++..+....|.++...|+.-.
T Consensus 378 GfwRdfGfGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl 434 (494)
T KOG3588|consen 378 GFWRDFGFGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGL 434 (494)
T ss_pred ccccccCCceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCce
Confidence 2 122333344566677788988854 5566 6899999999999999999986543
No 77
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=98.25 E-value=6.2e-05 Score=58.74 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=98.1
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~ 84 (242)
...+|+||||-+|+++.|...|.-|...+.. -++.|+||+.-..+ .+..+.-+
T Consensus 149 ar~kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL~y~iyVieQ~g~~-------------------------~FNRakL~ 203 (372)
T KOG3916|consen 149 ARHKVAIIIPFRNREEHLRYLLHHLHPFLQRQRLDYRIYVIEQAGNK-------------------------PFNRAKLL 203 (372)
T ss_pred ccceeEEEeecccHHHHHHHHHHHhhHHHHhhhhceeEEEEEecCCC-------------------------cccHHHhh
Confidence 3468999999999999998877765443222 57899999875432 23466677
Q ss_pred HHHHhhcC----CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCC
Q 026146 85 IHGLKHAS----GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWP 160 (242)
Q Consensus 85 n~g~~~a~----~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
|.|+..|- -|-++|=|.|..+..|. .+..+..-. ..+. ..+.......
T Consensus 204 NVGf~eAlkd~~wdCfIFHDVDllPenDr-------------NlY~C~~~P-------RH~s--------va~dk~gy~L 255 (372)
T KOG3916|consen 204 NVGFLEALKDYGWDCFIFHDVDLLPENDR-------------NLYGCPEQP-------RHMS--------VALDKFGYRL 255 (372)
T ss_pred hhHHHHHHHhcCCCEEEEecccccccCCC-------------CccCCCCCC-------cchh--------hhhhhccccc
Confidence 88877763 35577778886543321 111110011 1111 1111222233
Q ss_pred CccccccchhhcchHHHHHhhhc-ccCCCc-ccchHHHHHHHHcCCceEEee
Q 026146 161 GVSDLTGSFRLYKKSVLEDVISS-CVSKGY-VFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 161 ~~~~~~g~~~~~rr~~~~~~~~~-~~~~~~-~~d~~~~~~~~~~g~~i~~~p 210 (242)
....++||..+++++-++++-|| ....+| +||=|++.|+..+|++|-.-|
T Consensus 256 PY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~ 307 (372)
T KOG3916|consen 256 PYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPP 307 (372)
T ss_pred cchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCC
Confidence 44456788889999999999666 456677 789999999999999998776
No 78
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.04 E-value=1.8e-05 Score=69.41 Aligned_cols=139 Identities=21% Similarity=0.204 Sum_probs=93.3
Q ss_pred CEEEEEeCCCCCCCCChHHHHHHHHh-cCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCC--Cccccccchh
Q 026146 94 SFVVIMDADLSHHPKYLPSFIKKQLE-TGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWP--GVSDLTGSFR 170 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~ 170 (242)
+||+++|+|+.+.|+.+..+++.+++ +.++.+.| +.....+ .-..+...+.....+.+.+..... .+....||+.
T Consensus 442 ~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG-~I~~~~~-~w~v~~Q~FEY~Ish~l~Ka~ESvFG~VsclPGcfs 519 (862)
T KOG2571|consen 442 DYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG-RILNKGG-SWVVAYQNFEYAISHNLQKATESVFGCVSCLPGCFS 519 (862)
T ss_pred eEEEEecCCCccCcHHHHHHHHHhccCcccceecc-ccccCCC-ceEEeHHHHHHHHHHHHHHhhhhhceeEEecCchhH
Confidence 78899999999999999999999985 45666666 4433322 224445555555566655543332 4667889999
Q ss_pred hcchHHHHHhh------h------cccCCCcccchHHHHHHHHcCCceEEeeeeeeeccCCCcccch-HHHHHHHHH
Q 026146 171 LYKKSVLEDVI------S------SCVSKGYVFQMEMIVRACRKGYHIEEVPITFVDRVFGSSKLGG-SEIVEYLKG 234 (242)
Q Consensus 171 ~~rr~~~~~~~------~------~~~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~~~~s~~~~-~~~~~~~~~ 234 (242)
++|-+++..-- . ......++||-.+|.++..+||.+.|++.+..+-..+++-..+ .+..+|..+
T Consensus 520 ~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 520 LYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred HHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence 99997766531 1 1124567899999999999999999998766554444433222 444444433
No 79
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=97.98 E-value=0.00019 Score=54.58 Aligned_cols=168 Identities=14% Similarity=0.106 Sum_probs=97.3
Q ss_pred EEEEEeCccccccHHHHHH-HHHhh---hcCCCeEEEEEeCCCCCChHHHHHHHHH---HhCCCcEEEeeCCCC-cc---
Q 026146 11 YSIIIPTYNERLNIALIVY-LIFKH---LRDVDFEIIVVDDGSPDGTQEVVKQLQQ---LYGEDRILLRPRPKK-LG--- 79 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~-sl~~~---~~~~~~eiivvd~~s~d~t~~~l~~~~~---~~~~~~~~~~~~~~~-~g--- 79 (242)
+=|..-.||.++.|+..+. ++.+. ..+.+.-|-|++++|.|.|.++|+.+.. ..+ .+-.+...+.. ..
T Consensus 2 ~fIA~~l~~~~~iL~~~~~~~ll~li~~LGp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lg-v~~~i~~~~~~~~~~~~ 80 (241)
T PF11735_consen 2 YFIAANLYNNEDILPSLWGDALLELIRFLGPENVFVSIYESGSWDGTKEALRALDAELDALG-VPHSIVLSDITHRDEIE 80 (241)
T ss_pred EEEEEEcccCHhHHHHHHHHHHHHHHHHhCcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCC-CCeEEEeCCCccccccc
Confidence 3455567888888876655 54443 3335677889999999999999998873 333 22333231111 11
Q ss_pred ----------hHHHHHHHHhhc---------CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEe---------
Q 026146 80 ----------LGTAYIHGLKHA---------SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYV--------- 131 (242)
Q Consensus 80 ----------~~~a~n~g~~~a---------~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~--------- 131 (242)
.+.-||.+++-- ..+.|+||+ |..+.+..+-+++..-...+++++++--+.
T Consensus 81 ~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCamDf~~~~~fYD~w 159 (241)
T PF11735_consen 81 RPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTRNRGNYDMACAMDFINPPKFYDTW 159 (241)
T ss_pred ccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhcCcccccchhhcccccCcccccee
Confidence 368899998642 247899999 878887777777766554567877763331
Q ss_pred --ec--CCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHHh
Q 026146 132 --RS--GGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDV 180 (242)
Q Consensus 132 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ 180 (242)
+. +.....+.+..+................+....+|..++..+.|..-
T Consensus 160 v~RD~~G~~~~~~~~p~f~~~~~~~~~~~~~pv~V~SCWnG~va~~a~pf~~~ 212 (241)
T PF11735_consen 160 VLRDIEGDSFGSPFWPYFRSASSRDRLRRGDPVPVFSCWNGMVAFDAEPFLPP 212 (241)
T ss_pred EEecCCCCccccccCcCcCCHHHHHHHhcCCCeeeecccCCcccccchhhccC
Confidence 11 11111111111111111111122223346667778888888888764
No 80
>PLN02189 cellulose synthase
Probab=97.93 E-value=2.2e-05 Score=69.96 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=45.0
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhh----cCCCEEEEEeCCCCCC-CCChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKH----ASGSFVVIMDADLSHH-PKYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~----a~~d~i~~lD~D~~~~-~~~l~~l~~~~~~~ 120 (242)
.+.|+.++++.| |++|+|..++- +.++||+.+|.|-.+. +..+...+-.+.++
T Consensus 499 ~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp 561 (1040)
T PLN02189 499 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 561 (1040)
T ss_pred eeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCC
Confidence 588888877766 89999999954 5799999999999975 59999999888764
No 81
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=97.91 E-value=0.00011 Score=54.57 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=64.1
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCC--CCChHHHHHHHHHHhCCCcEEEeeCCCC-------c
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGS--PDGTQEVVKQLQQLYGEDRILLRPRPKK-------L 78 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s--~d~t~~~l~~~~~~~~~~~~~~~~~~~~-------~ 78 (242)
|.|-+|.|||.+......+.+ |.+.+.. +++.+|||+|+. ++.+.++|++. +...+.+..+.+ .
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtR-La~TL~lVp~l~WIVVEd~~~~t~~va~lL~~s-----gl~y~HL~~~~~~~~~~~~~ 74 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTR-LAHTLRLVPPLHWIVVEDSEEKTPLVAELLRRS-----GLMYTHLNAKTPSDPTWLKP 74 (223)
T ss_pred CeEEEECCCCccchhhHHHHH-HHHHHhcCCceEEEEEeCCCCCCHHHHHHHHHc-----CCceEEeccCCCCCcccCCc
Confidence 468899999997655443222 2222222 688999999987 23355555543 334444443322 1
Q ss_pred chHHHHHHHHhhcC-------CCEEEEEeCCCCCCCCChHHHH
Q 026146 79 GLGTAYIHGLKHAS-------GSFVVIMDADLSHHPKYLPSFI 114 (242)
Q Consensus 79 g~~~a~n~g~~~a~-------~d~i~~lD~D~~~~~~~l~~l~ 114 (242)
.....||.|++..+ .-+|.|.|+|...+-..++++-
T Consensus 75 rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~emR 117 (223)
T cd00218 75 RGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEMR 117 (223)
T ss_pred ccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHHh
Confidence 23567999998753 3679999999999888888743
No 82
>PLN02458 transferase, transferring glycosyl groups
Probab=97.84 E-value=0.00014 Score=56.78 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=64.1
Q ss_pred CCCcEEEEEeCcc-ccccHHHHHHHHHhhhcC--CCeEEEEEeCCCC-CChHHHHHHHHHHhCCCcEEEeeCCCCcc---
Q 026146 7 NKNKYSIIIPTYN-ERLNIALIVYLIFKHLRD--VDFEIIVVDDGSP-DGTQEVVKQLQQLYGEDRILLRPRPKKLG--- 79 (242)
Q Consensus 7 ~~~~isiiip~~n-~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~-d~t~~~l~~~~~~~~~~~~~~~~~~~~~g--- 79 (242)
+.+.|-||.|||. +..... -|..|...+.. +++.+|||+|+.. ..+.++|++. +...+.+..+.+..
T Consensus 110 ~~rlIivVTPTY~rR~~Q~a-~LTRLahTL~lVp~pL~WIVVEd~~~t~~va~lLrrs-----Gl~y~HL~~k~~~~~~~ 183 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQGV-LLRRLANTLRLVPPPLLWIVVEGQSDSEEVSEMLRKT-----GIMYRHLVFKENFTDPE 183 (346)
T ss_pred CCceEEEECCCCCCcchhHH-HHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHc-----CCceEEeccCCCCCCcc
Confidence 4566999999997 332222 23333222222 3789999998762 2344444443 34455555444432
Q ss_pred --hHHHHHHHHhhcC----CCEEEEEeCCCCCCCCChHHHH
Q 026146 80 --LGTAYIHGLKHAS----GSFVVIMDADLSHHPKYLPSFI 114 (242)
Q Consensus 80 --~~~a~n~g~~~a~----~d~i~~lD~D~~~~~~~l~~l~ 114 (242)
....||.|++..+ .-+|.|.|+|...+-+.++++-
T Consensus 184 ~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEmR 224 (346)
T PLN02458 184 AELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEIR 224 (346)
T ss_pred chhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHHh
Confidence 2456999998874 5789999999998888877743
No 83
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.79 E-value=0.0083 Score=47.42 Aligned_cols=166 Identities=17% Similarity=0.263 Sum_probs=91.2
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCC------hHHHHHHHHHHhCCCcEEEeeCC-------
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDG------TQEVVKQLQQLYGEDRILLRPRP------- 75 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~------t~~~l~~~~~~~~~~~~~~~~~~------- 75 (242)
...+||+|+.|+.-. +|+.+++... .+.-||||.|++... ..+.++.++.... ..+.+++.+
T Consensus 50 ~~maIVVP~KdE~l~---lleGVL~gIP-h~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t~-r~~i~vHQkDp~la~A 124 (381)
T TIGR02460 50 GKTAIVVPVKNEKLH---LLEGVLSGIP-HECPIIIVSNSKREPPDRFKMEVDLIRHFSNLTH-RKIIIIHQKDPALAEA 124 (381)
T ss_pred hCcEEEEEcCCCchh---HHhhHhhcCC-CCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhhc-CceEEEEcCCHHHHHH
Confidence 358999999997632 4555555533 467899999987632 3345555554321 234444432
Q ss_pred ---------------CCcchHHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHH------hcCCcEEEEEEEe
Q 026146 76 ---------------KKLGLGTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQL------ETGASIVTGTRYV 131 (242)
Q Consensus 76 ---------------~~~g~~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~------~~~~~~v~~~~~~ 131 (242)
-+-|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+..+.+. +.+..+|=-....
T Consensus 125 f~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiP-GaV~EYvk~yAaGf~ma~spy~MVRi~W~~ 203 (381)
T TIGR02460 125 FKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFP-GAVNEYVKIYAAGFLMATSPYSMVRIHWRY 203 (381)
T ss_pred HHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCC-chHHHHHHHHHhhhcccCCCCeeEEEEecC
Confidence 12367777777776665 59999999997764 55666665543 2333333211100
Q ss_pred e----cCC--ccCchhhHHHHHhHHHHHHHHHhCCC---ccccccchhhcchHHHHHh
Q 026146 132 R----SGG--VHGWNLMRKLTSRGANVLAQTLLWPG---VSDLTGSFRLYKKSVLEDV 180 (242)
Q Consensus 132 ~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~rr~~~~~~ 180 (242)
. .++ ...+.-.....+++.+.+.....+.. +..-.+|=.+.++++++.+
T Consensus 204 KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfet~ii~TGnAGEhAmt~~La~~l 261 (381)
T TIGR02460 204 KPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFETDIIKTGNAGEHALTMKLAEIL 261 (381)
T ss_pred CCceecCeEEEcCCCchhHHHHHHHHHHHHhhccccCcceecccchhhhhhHHHHhhC
Confidence 0 000 12223333344444444444332221 2222455568999999987
No 84
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.73 E-value=0.0097 Score=47.35 Aligned_cols=166 Identities=20% Similarity=0.257 Sum_probs=89.9
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCC------hHHHHHHHHHHhCCCcEEEeeCC-------
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDG------TQEVVKQLQQLYGEDRILLRPRP------- 75 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~------t~~~l~~~~~~~~~~~~~~~~~~------- 75 (242)
...+||||+.|+.- .+|+.+++... .+.-||||.|++... ..+.+++++.... ..+.+++.+
T Consensus 51 ~~mAIVVP~KdE~l---~lleGVL~gIP-h~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t~-r~~i~vHQkDp~la~A 125 (393)
T PRK14503 51 GRMAIVVPVKNERL---KLLEGVLKGIP-HECPIIVVSNSKREPPDRFKLEVDLVRHFYRLTQ-RPIIIVHQKDPGLAEA 125 (393)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcCC-CCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhhc-CceEEEEcCCHHHHHH
Confidence 35899999999763 24555555533 467899999986632 3355555554321 234444432
Q ss_pred ---------------CCcchHHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHH------hcCCcEEEEEEEe
Q 026146 76 ---------------KKLGLGTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQL------ETGASIVTGTRYV 131 (242)
Q Consensus 76 ---------------~~~g~~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~------~~~~~~v~~~~~~ 131 (242)
-+-|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+..+.+. +.+..+|=-....
T Consensus 126 f~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiP-GaV~EYvk~yAAGf~ma~spytMVRi~W~~ 204 (393)
T PRK14503 126 LKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIP-GAVNEYVKIYAAGFLMAESPYTMVRIHWRY 204 (393)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCC-chHHHHHHHHHhhhcccCCCCceEEEEecC
Confidence 12267777777776665 59999999997764 55666665543 2333333211110
Q ss_pred e----cCC--ccCchhhHHHHHhHHHHHHHHHhCCC---ccccccchhhcchHHHHHh
Q 026146 132 R----SGG--VHGWNLMRKLTSRGANVLAQTLLWPG---VSDLTGSFRLYKKSVLEDV 180 (242)
Q Consensus 132 ~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~rr~~~~~~ 180 (242)
. .+. ...+.-.....+++.+.+.....+.. +..-.+|=.+.++++++.+
T Consensus 205 KPKv~~~~lyF~k~GRvSel~nr~LN~l~~~~~gf~t~li~TGNAGEhAmt~~La~~l 262 (393)
T PRK14503 205 KPKVTEDRLYFRKWGRVSEITNRYLNQLISEYTGFETDIIKTGNAGEHAMTMKLAEIM 262 (393)
T ss_pred CCceecCeEEEecCcchhHHHHHHHHHHHhhhccccccceecCCchhhHhhHHHHHhC
Confidence 0 000 11122223333344444443332221 2222355568999999987
No 85
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=97.67 E-value=0.00039 Score=55.85 Aligned_cols=207 Identities=13% Similarity=0.058 Sum_probs=118.2
Q ss_pred EEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHH------------------HHHHHHHH--------
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQE------------------VVKQLQQL-------- 63 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~------------------~l~~~~~~-------- 63 (242)
|=|.|.+|... ....+|.++.++... ..+-|=||+....++..- ....+...
T Consensus 2 IFvsiasyRD~-~c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDP-ECAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCc-hHHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 66888999875 488888888887655 456677776644332220 01111110
Q ss_pred ----hCCCcEEEee--CCCCcchHHHHHHHHhhcCC-CEEEEEeCCCCCCCCChHHHHHHHHhcC--CcEEEEEEEeecC
Q 026146 64 ----YGEDRILLRP--RPKKLGLGTAYIHGLKHASG-SFVVIMDADLSHHPKYLPSFIKKQLETG--ASIVTGTRYVRSG 134 (242)
Q Consensus 64 ----~~~~~~~~~~--~~~~~g~~~a~n~g~~~a~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~~--~~~v~~~~~~~~~ 134 (242)
....+|+++. ..+-.|...||+.+.+.-.+ +|++.+|+...+.++|=+.+++.++.-+ ..++.......+.
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~ 160 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEP 160 (343)
T ss_pred ccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCccc
Confidence 0112455555 44567999999999988774 8999999999999999999998887532 2233221111011
Q ss_pred ----CccCchh-h----HHHH-----HhHHHHHHHH--HhCC-CccccccchhhcchHHHHHhhhccc---CCCcccchH
Q 026146 135 ----GVHGWNL-M----RKLT-----SRGANVLAQT--LLWP-GVSDLTGSFRLYKKSVLEDVISSCV---SKGYVFQME 194 (242)
Q Consensus 135 ----~~~~~~~-~----~~~~-----~~~~~~~~~~--~~~~-~~~~~~g~~~~~rr~~~~~~~~~~~---~~~~~~d~~ 194 (242)
....... . ..+. ......+... +..+ ......+++..-+-++++++ .+++ ....+|++.
T Consensus 161 ~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~GEE~~ 239 (343)
T PF11397_consen 161 DGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDGEEIS 239 (343)
T ss_pred ccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccccHHHH
Confidence 0000000 0 0000 0000000000 0111 12334555554555556666 3433 345588999
Q ss_pred HHHHHHHcCCceEEeeeeeeeccCC
Q 026146 195 MIVRACRKGYHIEEVPITFVDRVFG 219 (242)
Q Consensus 195 ~~~~~~~~g~~i~~~p~~~~~~~~~ 219 (242)
++.|+.-.||.++.-+..+..|.+.
T Consensus 240 ~aaRlwT~GYD~Y~P~~~v~~H~Y~ 264 (343)
T PF11397_consen 240 MAARLWTHGYDFYSPTRNVLFHLYS 264 (343)
T ss_pred HHHHHHHcCCccccCCCceeEEEcc
Confidence 9999999999998888766666555
No 86
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00046 Score=53.46 Aligned_cols=105 Identities=16% Similarity=0.180 Sum_probs=70.3
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCC--CCChHHHHHHHHHHhCCCcEEEeeCCCCcch----
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGS--PDGTQEVVKQLQQLYGEDRILLRPRPKKLGL---- 80 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s--~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~---- 80 (242)
.+.|-||.|||++.....+ |..|...+.. ++..+|||+||+ +..+..+|++- +...+++..+.+.+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~V~nLhWIVVEd~~~~~p~v~~~L~rt-----gl~ythl~~~t~~~~~~~r 159 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRLVPNLHWIVVEDGEGTTPEVSGILRRT-----GLPYTHLVHKTPMGYKARR 159 (330)
T ss_pred CccEEEEcccccchhHHHH-HHHHHHHHhhcCCeeEEEEecCCCCCHHHHHHHHHc-----CCceEEEeccCCCCCcccc
Confidence 6789999999998744432 2223222222 689999999985 23455555553 345555555555552
Q ss_pred -HHHHHHHHhhcC---------CCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 81 -GTAYIHGLKHAS---------GSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 81 -~~a~n~g~~~a~---------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
...||.|++..+ .-+|.|.|+|...+-+.+++ ++..+.
T Consensus 160 g~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e-iR~v~~ 207 (330)
T KOG1476|consen 160 GWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE-IRNVKK 207 (330)
T ss_pred chhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH-Hhccce
Confidence 578999997654 46788999999999888888 555443
No 87
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=97.65 E-value=0.00015 Score=56.65 Aligned_cols=112 Identities=14% Similarity=0.171 Sum_probs=71.8
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH-hCC-CcEEEeeCCC--CcchH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL-YGE-DRILLRPRPK--KLGLG 81 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~-~~~-~~~~~~~~~~--~~g~~ 81 (242)
.....+.|+||+-+. .|...+++-.... ..+++|||-|+...+..++.+.+.-+ +.. .-.+++-.+. .+.-.
T Consensus 5 ~~~~~~divi~~~~~--~l~~~~~~wr~~~--~~~hliiv~d~~~~~~~~~p~g~~~~~y~~~di~~~lg~~~~i~~~~~ 80 (348)
T PF03214_consen 5 ILDDEVDIVIPALRP--NLTDFLEEWRPFF--SPYHLIIVQDPDPNEEIKVPEGFDYEVYNRNDIERVLGAKTLIPFKGD 80 (348)
T ss_pred cccCcccEEeecccc--cHHHHHHHHHHhh--cceeEEEEeCCCccccccCCcccceeeecHhhHHhhcCCccccccccc
Confidence 445679999999773 4667777776654 57899999888654433333221000 000 0001111111 12346
Q ss_pred HHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcC
Q 026146 82 TAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETG 121 (242)
Q Consensus 82 ~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~ 121 (242)
+.||.|+-.++.+|++++|+|+.+..+..-..+..+.++.
T Consensus 81 a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~ 120 (348)
T PF03214_consen 81 ACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHV 120 (348)
T ss_pred chhhhHhhhcccceEEEEccccccccCCccceehhhhccc
Confidence 6899999999999999999999988888877777776643
No 88
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=97.62 E-value=0.00015 Score=65.22 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=44.9
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhh----cCCCEEEEEeCCCCCC-CCChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKH----ASGSFVVIMDADLSHH-PKYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~----a~~d~i~~lD~D~~~~-~~~l~~l~~~~~~~ 120 (242)
.+.|+.++.+.| |++|+|..++- +.++||+.+|.|-.+. +..+...+-.+.++
T Consensus 517 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp 579 (1079)
T PLN02638 517 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDP 579 (1079)
T ss_pred ceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCc
Confidence 678888777766 89999999954 4799999999998865 99999999988764
No 89
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.45 E-value=0.0013 Score=52.12 Aligned_cols=103 Identities=25% Similarity=0.372 Sum_probs=59.1
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCC---CC---hHHHHHHHHHHhCCCcEEEeeCC-------
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSP---DG---TQEVVKQLQQLYGEDRILLRPRP------- 75 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~---d~---t~~~l~~~~~~~~~~~~~~~~~~------- 75 (242)
.+.+||||+.|+.- .+++.+++... .+.-||||.|++. |. -.+.++++..... ..+.+++.+
T Consensus 50 ~~maIVVP~KnE~l---~lleGVL~gIP-h~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQkDp~lA~A 124 (381)
T PF09488_consen 50 SKMAIVVPCKNEKL---KLLEGVLSGIP-HDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQKDPGLAEA 124 (381)
T ss_dssp TTEEEEEEESS--H---HHHHHHHHCS--TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT-HHHHHH
T ss_pred hCcEEEEECCCCch---hhhhhhhhcCC-CCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecCCHHHHHH
Confidence 36899999999752 34555555533 4678999999887 43 3456666665432 345555533
Q ss_pred ---------------CCcchHHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 76 ---------------KKLGLGTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 76 ---------------~~~g~~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
-+-|++.++-.|+-.|+ .+||-|+|+|..++ +.+-+..+.+
T Consensus 125 f~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP-GaV~EYvk~y 183 (381)
T PF09488_consen 125 FKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP-GAVNEYVKDY 183 (381)
T ss_dssp HHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H-HHHHHHHHHH
T ss_pred HHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc-chHHHHHHHH
Confidence 12367888888887765 59999999996654 4455555443
No 90
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=97.41 E-value=0.00012 Score=45.46 Aligned_cols=50 Identities=18% Similarity=0.144 Sum_probs=35.3
Q ss_pred ccccccchhhcchHHHHHhhhccc-CCCc-ccchHHHHHHHHcCCceEEeee
Q 026146 162 VSDLTGSFRLYKKSVLEDVISSCV-SKGY-VFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 162 ~~~~~g~~~~~rr~~~~~~~~~~~-~~~~-~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
.....||.++++|+.+.+++|+++ ..+| +||.||..|+..+|+++..++.
T Consensus 16 ~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~ 67 (78)
T PF02709_consen 16 YPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPG 67 (78)
T ss_dssp STT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SST
T ss_pred CCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCC
Confidence 355678888999999999999976 4566 6899999999999999888763
No 91
>PLN02195 cellulose synthase A
Probab=97.38 E-value=0.0005 Score=61.34 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=41.8
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCCCCC-CChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLSHHP-KYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~~~~-~~l~~l~~~~~~~ 120 (242)
.+.|+.++++.| |++|+|.+++.+ .++||+.+|.|-.+.+ +++...+-.+.+.
T Consensus 420 ~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~ 482 (977)
T PLN02195 420 RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDP 482 (977)
T ss_pred eeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCc
Confidence 456666655555 899999999854 5999999999987654 7999999888764
No 92
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=97.28 E-value=0.0018 Score=50.53 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=81.4
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEE-E-----eeCCC--Ccch
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRIL-L-----RPRPK--KLGL 80 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~-~-----~~~~~--~~g~ 80 (242)
-.++..|-+.|++..|+++|+|++.... |.||.=|.|+|+|.+++.++++.+|.---. + +.++. .-..
T Consensus 87 l~~~~~iRvKnE~~tl~~si~S~Lpai~----~gVI~yNdc~D~t~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l 162 (347)
T PF06306_consen 87 LNPWAFIRVKNEAMTLAESIESILPAID----EGVIGYNDCTDGTEEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSL 162 (347)
T ss_pred CCcceEEEEcchhhhHHHHHHHHHHHHh----ccEEEeecCCCCHHHHHHHHHHhCcccccccCcchhhccCCchhhhhh
Confidence 4578899999999999999999987743 788888999999999999999999842111 1 11111 0013
Q ss_pred HHHHHHHHhhc-CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEe
Q 026146 81 GTAYIHGLKHA-SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYV 131 (242)
Q Consensus 81 ~~a~n~g~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 131 (242)
..=.|.++... +.+|++-+|+|-+.++.-|-+..-.. +...+++.-++..
T Consensus 163 ~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~p-k~~~~~v~YsRIN 213 (347)
T PF06306_consen 163 YNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYIP-KNDYDVVSYSRIN 213 (347)
T ss_pred hhhhhhhhcccccceEEEEeccceeecHHHHhhhheee-ccccceEEeccee
Confidence 33456666664 58999999999997776553333222 3456666554443
No 93
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=97.20 E-value=0.0012 Score=49.02 Aligned_cols=179 Identities=17% Similarity=0.095 Sum_probs=96.9
Q ss_pred cHHHHHHHHHhhhcCCCeEEEEEeCCCC--CC-hHHHHHHHHHHhCCCcEEEeeCCCC---cc--hHHHHHHHHhhcC-C
Q 026146 23 NIALIVYLIFKHLRDVDFEIIVVDDGSP--DG-TQEVVKQLQQLYGEDRILLRPRPKK---LG--LGTAYIHGLKHAS-G 93 (242)
Q Consensus 23 ~l~~~l~sl~~~~~~~~~eiivvd~~s~--d~-t~~~l~~~~~~~~~~~~~~~~~~~~---~g--~~~a~n~g~~~a~-~ 93 (242)
.|+++..+...+.. ..+.++++-..+. +. ..+.+.+=.+.+. .+........ .. .-.+++.+.++.. .
T Consensus 5 ~IR~TW~~~~~~~~-~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~ 81 (195)
T PF01762_consen 5 AIRETWGNQRNFKG-VRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNA 81 (195)
T ss_pred HHHHHHhcccccCC-CcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCch
Confidence 34555554433222 4566666666555 32 2333443334444 4555554332 22 3456667777766 8
Q ss_pred CEEEEEeCCCCCCCCChHHHHHHH-HhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhc
Q 026146 94 SFVVIMDADLSHHPKYLPSFIKKQ-LETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLY 172 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 172 (242)
+|++.+|+|..+.+.-|.+.+... .......+.|........... + ...+...........-...+.|++.++
T Consensus 82 ~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~-~-----~~kw~v~~~~y~~~~yP~y~~G~~yvl 155 (195)
T PF01762_consen 82 KYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRD-P-----SSKWYVSEEEYPDDYYPPYCSGGGYVL 155 (195)
T ss_pred hheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccc-c-----ccCceeeeeecccccCCCcCCCCeEEe
Confidence 999999999999988888877765 222334444433322111000 0 000000000000111233456888899
Q ss_pred chHHHHHhhhcc--cCCCcccchHHHHHHHHcCCceEEee
Q 026146 173 KKSVLEDVISSC--VSKGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 173 rr~~~~~~~~~~--~~~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
++++++.+.... ......||.-+..-+...|.+....|
T Consensus 156 s~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 156 SSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred cHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 999999984432 23344789888888888887765543
No 94
>PLN02248 cellulose synthase-like protein
Probab=97.17 E-value=0.00046 Score=62.27 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=42.8
Q ss_pred CcEEEeeCCCCcc-----hHHHHHHHHh----hcCCCEEEEEeCCCCCC-CCChHHHHHHHHh
Q 026146 67 DRILLRPRPKKLG-----LGTAYIHGLK----HASGSFVVIMDADLSHH-PKYLPSFIKKQLE 119 (242)
Q Consensus 67 ~~~~~~~~~~~~g-----~~~a~n~g~~----~a~~d~i~~lD~D~~~~-~~~l~~l~~~~~~ 119 (242)
+.+.|+.++++.| |++|+|..++ .+.++||+.+|.|-.+. +..+...+-.+.+
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 3677777776666 8999998887 45699999999999954 5699999988876
No 95
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=97.09 E-value=0.0056 Score=48.24 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=67.7
Q ss_pred CCcEEEEEeCccc--cccHHHHHHHHHhhhcC---CCeEEEEE-eCCCCCChHHHHHHHHHHhC----CCcEEEeeCC--
Q 026146 8 KNKYSIIIPTYNE--RLNIALIVYLIFKHLRD---VDFEIIVV-DDGSPDGTQEVVKQLQQLYG----EDRILLRPRP-- 75 (242)
Q Consensus 8 ~~~isiiip~~n~--~~~l~~~l~sl~~~~~~---~~~eiivv-d~~s~d~t~~~l~~~~~~~~----~~~~~~~~~~-- 75 (242)
..+++|-||+-.+ ..+|..+|.||.....+ ...-|+|. .|...+.-..+.+++...++ ...+.++..+
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~~ 130 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPPS 130 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEecccc
Confidence 4569999999774 57899999999998766 23333333 33222233333433333221 1133333322
Q ss_pred ------------------------CCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhc
Q 026146 76 ------------------------KKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLET 120 (242)
Q Consensus 76 ------------------------~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 120 (242)
+|.-.+..++.+ ...++|++.|.||.+..++|+..+...+.+.
T Consensus 131 ~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~--~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 131 YYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC--QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred cCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH--HhcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 222233333333 2358999999999999999999999888753
No 96
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=96.93 E-value=0.0014 Score=51.41 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=61.7
Q ss_pred cccCCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChH-------------HHHHHHHHHhCCCcE
Q 026146 3 ETNKNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQ-------------EVVKQLQQLYGEDRI 69 (242)
Q Consensus 3 ~~~~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~-------------~~l~~~~~~~~~~~~ 69 (242)
.++.....+.|||||-.+. .++++..... ..+++|+|-++....+. +-..+.... .-
T Consensus 5 ~~~~~~~evdIVi~TI~~~----~fL~~~r~~l--~~~h~iiV~d~D~~~~~~~~~G~d~~vy~r~d~~~~Lg~----~~ 74 (346)
T PLN03180 5 PAPLLKDELDIVIPTIRNL----DFLEMWRPFF--QPYHLIIVQDGDPSKEIKVPEGFDYELYNRNDINRILGP----KA 74 (346)
T ss_pred cCCCCCCcceEEEeccCch----hHHHHHHHhc--CcccEEEEecCCcccceeccCCCceeecCHHHHHhhhcc----cc
Confidence 3445567899999996653 4555555443 34566666664322221 111222211 11
Q ss_pred EEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCC-------ChHHHHHHHH
Q 026146 70 LLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPK-------YLPSFIKKQL 118 (242)
Q Consensus 70 ~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~-------~l~~l~~~~~ 118 (242)
+.+. ..-.+.+|.|+-.++.+|++++|+|+.+..+ ++++.+..+.
T Consensus 75 ~~Ip----~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL~ 126 (346)
T PLN03180 75 SCIS----FKDSACRCFGYLVSKKKYIFTIDDDCFVAKDPSGKLINALEQHIKNLL 126 (346)
T ss_pred cccc----cCcccchhhhheeecceEEEEECCCCCCCCCCccccccHHHHHHHhcC
Confidence 2222 2345688999999999999999999997766 5666665554
No 97
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=96.89 E-value=0.0061 Score=43.55 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=71.5
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhc-CCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHA-SGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a-~~d~i 96 (242)
+....+..+++.+.+.. .-+|+|+-+. + + +.+.... ..+.++..+ ...|...++-.|+... ..+.+
T Consensus 22 ~g~~li~~~l~~l~~~~---~~~Ivvv~~~--~---~-~~~~~~~---~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~v 89 (160)
T PF12804_consen 22 GGKPLIERVLEALREAG---VDDIVVVTGE--E---E-IYEYLER---YGIKVVVDPEPGQGPLASLLAALSQLPSSEPV 89 (160)
T ss_dssp TTEEHHHHHHHHHHHHT---ESEEEEEEST--H---H-HHHHHTT---TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEE
T ss_pred CCccHHHHHHHHhhccC---CceEEEecCh--H---H-HHHHHhc---cCceEEEeccccCChHHHHHHHHHhcccCCCc
Confidence 66678899999997662 1277877665 1 2 2222222 246666654 3589999999999999 89999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIVTGT 128 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~ 128 (242)
+++..|.. ++++.+..+++.+.+.+.++++..
T Consensus 90 lv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 90 LVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 99999996 799999999999987778887653
No 98
>PLN02917 CMP-KDO synthetase
Probab=96.88 E-value=0.013 Score=46.41 Aligned_cols=191 Identities=12% Similarity=0.034 Sum_probs=94.5
Q ss_pred CCcEEEEEeCccc--------------cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee
Q 026146 8 KNKYSIIIPTYNE--------------RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 8 ~~~isiiip~~n~--------------~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
.+++.+|||+... ...+...++.+.+.. ..+ .|||..+ .+.. .+..... .+.++.
T Consensus 45 ~~~i~aIIpA~G~SsR~~~K~L~~i~GkPLL~~vi~~a~~~~-~~~-~VVV~~~--~e~I----~~~~~~~---~v~vi~ 113 (293)
T PLN02917 45 RSRVVGIIPARFASSRFEGKPLVHILGKPMIQRTWERAKLAT-TLD-HIVVATD--DERI----AECCRGF---GADVIM 113 (293)
T ss_pred CCcEEEEEecCCCCCCCCCCCeeeECCEEHHHHHHHHHHcCC-CCC-EEEEECC--hHHH----HHHHHHc---CCEEEe
Confidence 3578888888643 344556666665431 122 3444422 2222 2232222 233333
Q ss_pred --CCCCcchHHHHHHHHhhcC--CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEe----ecCCccCchh--h
Q 026146 74 --RPKKLGLGTAYIHGLKHAS--GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYV----RSGGVHGWNL--M 142 (242)
Q Consensus 74 --~~~~~g~~~a~n~g~~~a~--~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~----~~~~~~~~~~--~ 142 (242)
.....|.+.+ ..|++... .|+++++++|.. ++++.++++++.+.++ .++++.+... .+....+... .
T Consensus 114 ~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t~~~~~~~~~~~~ygrv~vv~ 191 (293)
T PLN02917 114 TSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFSTAVTSLKPEDASDPNRVKCVV 191 (293)
T ss_pred CCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEEEeeecCHHHhcCCCceEEEE
Confidence 2333454444 46776654 689999999988 8899999999988654 3443332211 1111111110 0
Q ss_pred HHHHH-hHH--HHHH--HH--HhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeee
Q 026146 143 RKLTS-RGA--NVLA--QT--LLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 143 ~~~~~-~~~--~~~~--~~--~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
..-.. .++ .... +. .....+.....|.++|+++.+..+........-.|.+---+++.+.|+++..++.
T Consensus 192 ~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~~ 267 (293)
T PLN02917 192 DNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIKV 267 (293)
T ss_pred CCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEEe
Confidence 00000 000 0000 00 0012234557788899999999653222221112221112348899999987765
No 99
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=96.82 E-value=0.003 Score=43.17 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=47.9
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhc--CCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLR--DVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~--~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~ 84 (242)
...+++||||-+|+++.|...|..+..-+. +..+.|+||+...+. .+.+|.-+
T Consensus 45 ~~~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~~y~I~vieQ~~~~-------------------------~FNRg~L~ 99 (136)
T PF13733_consen 45 PRHKVAIIIPYRDREEHLRIFLPHLHPFLQRQQLDYRIFVIEQVDNG-------------------------PFNRGKLM 99 (136)
T ss_dssp -S-EEEEEEEESS-HHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSS----------------------------HHHHH
T ss_pred cccceEEEEEeCCHHHHHHHHHHHHHHHHhhCcceEEEEEEeeccCC-------------------------CCchhhhh
Confidence 346899999999999988877775533221 157899999875321 23466677
Q ss_pred HHHHhhcC----CCEEEEEeCCCCCCC
Q 026146 85 IHGLKHAS----GSFVVIMDADLSHHP 107 (242)
Q Consensus 85 n~g~~~a~----~d~i~~lD~D~~~~~ 107 (242)
|.|+..|. .|+++|=|.|..+..
T Consensus 100 NvGf~eA~~~~~~dc~ifHDVDllP~~ 126 (136)
T PF13733_consen 100 NVGFLEALKDDDFDCFIFHDVDLLPEN 126 (136)
T ss_dssp HHHHHHHHHHS--SEEEEE-TTEEESB
T ss_pred hHHHHHHhhccCCCEEEEecccccccC
Confidence 77777663 588999999977443
No 100
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.81 E-value=0.0042 Score=47.30 Aligned_cols=90 Identities=19% Similarity=0.245 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEE-eCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc---CCCEEEE--
Q 026146 25 ALIVYLIFKHLRDVDFEIIVV-DDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA---SGSFVVI-- 98 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivv-d~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a---~~d~i~~-- 98 (242)
.-||.||..|+. ++|.++|+ ++...+.-.+.|+++.+.+|+ ++++..+. .....+...+++.+ .+++++-
T Consensus 45 ~~~LpSl~~QTd-~dF~~lv~~~~~~P~~~~~rL~~l~~~~p~--~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~R 120 (234)
T PF11316_consen 45 TYCLPSLRAQTD-QDFTWLVLFDDDLPEPYRERLRDLLADYPQ--FRIVFRPP-GPHRDAMRRAINAARRDGADPVLQFR 120 (234)
T ss_pred HHHhhHHHhccC-CCeEEEEEECCCCCHHHHHHHHHHhccCCC--cEEEecCC-chHHHHHHHHHhhhccCCCCEEEEEE
Confidence 348999999987 47887774 555566677788888888773 44444332 23556666666433 3566554
Q ss_pred EeCCCCCCCCChHHHHHHHH
Q 026146 99 MDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 99 lD~D~~~~~~~l~~l~~~~~ 118 (242)
||+|+-+..++++.+-+...
T Consensus 121 LDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 121 LDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred ECCcchhhHHHHHHHHHHHH
Confidence 49999999999999998874
No 101
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=96.81 E-value=0.014 Score=44.25 Aligned_cols=102 Identities=19% Similarity=0.188 Sum_probs=67.8
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS-- 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-- 92 (242)
+|.-+ ...+..+++++.+. .-.+++||-... .+.+.++... ..+.++..+...|.+.+...|+....
T Consensus 21 ~~v~g-kpli~~~i~~l~~~---~i~~i~iv~~~~----~~~i~~~~~~---~~~~~~~~~~~~g~~~ai~~a~~~~~~~ 89 (229)
T cd02540 21 HPLAG-KPMLEHVLDAARAL---GPDRIVVVVGHG----AEQVKKALAN---PNVEFVLQEEQLGTGHAVKQALPALKDF 89 (229)
T ss_pred ceeCC-ccHHHHHHHHHHhC---CCCeEEEEECCC----HHHHHHHhCC---CCcEEEECCCCCCCHHHHHHHHHhhccC
Confidence 34434 47788888888664 223656655322 2233333332 24666666666788999999998765
Q ss_pred CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 93 GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 93 ~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
.+.++++++|.. +++..+.++++.+.+.+.++++.
T Consensus 90 ~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~ 125 (229)
T cd02540 90 EGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVL 125 (229)
T ss_pred CCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEE
Confidence 689999999984 78889999998887655665543
No 102
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=96.80 E-value=0.025 Score=44.89 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=84.4
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhC--------CCcEEEeeCCCC
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYG--------EDRILLRPRPKK 77 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~--------~~~~~~~~~~~~ 77 (242)
.++.+.|++-+.|+++.+..+++.|..+... ..+.|||--||+...+.+.++.+.+... ...+.+...+..
T Consensus 65 ~~~v~pvvVf~csR~~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~k 144 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRADALRRHVKKLLEYRPSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHKK 144 (411)
T ss_pred CCCceeEEEEecCcHHHHHHHHHHHHHhCcchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCcccc
Confidence 3567888888999999999999999988633 4677888888888888888877744321 012222222222
Q ss_pred cc--------hHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHH--HHhcCCcEEEEEEEeecCC
Q 026146 78 LG--------LGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKK--QLETGASIVTGTRYVRSGG 135 (242)
Q Consensus 78 ~g--------~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~--~~~~~~~~v~~~~~~~~~~ 135 (242)
.. +.-|+|..+.....+++++..+|..+.|+|+.=+... +.+.+..+-+.+.+..+++
T Consensus 145 ~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWNDNGk 212 (411)
T KOG1413|consen 145 FNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWNDNGK 212 (411)
T ss_pred cchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeeccCCC
Confidence 11 2334444444456899999999999999987766542 3344555555555655543
No 103
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=96.72 E-value=0.11 Score=38.67 Aligned_cols=156 Identities=13% Similarity=0.145 Sum_probs=91.3
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC----CCcEEEee------CCCCcchHHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG----EDRILLRP------RPKKLGLGTA 83 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~----~~~~~~~~------~~~~~g~~~a 83 (242)
.+|..+....+..+++.+.+. .--+++||-+...+...+.+.+.. .++ ...+.++. .+...|-+.|
T Consensus 23 llpv~g~~pli~~~l~~l~~~---gi~~iivv~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Gta~a 98 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVNS---GIRNVGVLTQYKSRSLNDHLGSGK-EWDLDRKNGGLFILPPQQRKGGDWYRGTADA 98 (200)
T ss_pred eeEECCeeeeHHHHHHHHHHC---CCCEEEEEeCCChHHHHHHHhCCC-cccCCCCCCCEEEeCcccCCCCCcccCcHHH
Confidence 566666546888899988764 233677776644332222222100 000 01244443 2345788999
Q ss_pred HHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCC
Q 026146 84 YIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWP 160 (242)
Q Consensus 84 ~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (242)
...|..... .+.++++.+|.+ .+.-+..+++.+.+.+.++.....
T Consensus 99 l~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~~~t~~~~------------------------------- 146 (200)
T cd02508 99 IYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGADITVVYK------------------------------- 146 (200)
T ss_pred HHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCCCEEEEEh-------------------------------
Confidence 988888753 578899999985 455688888877766666554332
Q ss_pred CccccccchhhcchHHHHHhhhc-ccCCCcccchHHHHHHHHcCCceEEee
Q 026146 161 GVSDLTGSFRLYKKSVLEDVISS-CVSKGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 161 ~~~~~~g~~~~~rr~~~~~~~~~-~~~~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
..++.++++++++.++... ..........++...+.+. .++...+
T Consensus 147 ----~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~-~~v~~~~ 192 (200)
T cd02508 147 ----ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKK-LKIYAYE 192 (200)
T ss_pred ----hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhcc-CcEEEEE
Confidence 4466678998888665221 1111222334666666666 4555443
No 104
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=96.72 E-value=0.036 Score=42.65 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=107.9
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH--hCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL--YGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
++|+|+. +.+.-+++.|... .--+|+||-.--+ ....+++... .-+.++++...++..|.+.|.-.|-++.
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~a---GI~dI~II~~~~~---~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av~~a~~fv 97 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLMLA---GIRDILIVVGPED---KPTFKELLGDGSDFGVDITYAVQPEPDGLAHAVLIAEDFV 97 (286)
T ss_pred cceecCc-chhHhHHHHHHHc---CCceEEEEecCCc---hhhhhhhhcCccccCcceEEEecCCCCcHHHHHHHHHhhc
Confidence 5678885 5677788888655 2336666644322 2223333222 1135899999999999999999999999
Q ss_pred C-CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchh
Q 026146 92 S-GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 92 ~-~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
. .+++++| +|.++.. -++++++.+.+.+.++.+.-....++...+-.-...-. +.....-+ -..+.-.....+..
T Consensus 98 ~~~~f~l~L-GDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e~d~~~-~v~~l~EK-P~~P~SNlAvtGlY 173 (286)
T COG1209 98 GDDDFVLYL-GDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRYGVVEFDEDG-KVIGLEEK-PKEPKSNLAVTGLY 173 (286)
T ss_pred CCCceEEEe-cCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccceEEEEcCCC-cEEEeEEC-CCCCCCceeEEEEE
Confidence 8 5555555 5555554 78888887776555554433333333211111111000 00000000 01111223345667
Q ss_pred hcchHHHHHhhhc-ccCCCcccchHHHHHHHHcCCceEEeeee
Q 026146 171 LYKKSVLEDVISS-CVSKGYVFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 171 ~~rr~~~~~~~~~-~~~~~~~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
+++.++++.+-.- +...+-.|=++........|.++......
T Consensus 174 ~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 174 FYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred EeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence 8999999987322 33344445567777888999998888754
No 105
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=96.69 E-value=0.043 Score=44.12 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=37.3
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVK 58 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~ 58 (242)
.+.+.|||-++|+.++|+.+|+||.+...-...-+|+--|.-.++.-++++
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 467889999999999999999999877443555566656665555444444
No 106
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=96.68 E-value=0.015 Score=42.48 Aligned_cols=99 Identities=20% Similarity=0.192 Sum_probs=64.6
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhcC--CCE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHAS--GSF 95 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a~--~d~ 95 (242)
+....++.+++.+.+. ..-+++|+-+.... . ..+.... ..+.++..+ ...|...+...|++.+. .++
T Consensus 24 ~g~~li~~~i~~l~~~---~~~~i~vv~~~~~~---~-~~~~~~~---~~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~ 93 (186)
T cd04182 24 DGKPLLRHALDAALAA---GLSRVIVVLGAEAD---A-VRAALAG---LPVVVVINPDWEEGMSSSLAAGLEALPADADA 93 (186)
T ss_pred CCeeHHHHHHHHHHhC---CCCcEEEECCCcHH---H-HHHHhcC---CCeEEEeCCChhhCHHHHHHHHHHhccccCCE
Confidence 4556788888888654 12257776543221 1 1222111 134444433 33588899999999886 799
Q ss_pred EEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 96 VVIMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 96 i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
++++.+|.. ++++.+..+++.+.+.+.++++.
T Consensus 94 vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 126 (186)
T cd04182 94 VLILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 999999985 78999999998876555555554
No 107
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=96.67 E-value=0.027 Score=44.34 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=70.9
Q ss_pred cEEEEE-eCcc-ccc--cHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC----------
Q 026146 10 KYSIII-PTYN-ERL--NIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP---------- 75 (242)
Q Consensus 10 ~isiii-p~~n-~~~--~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~---------- 75 (242)
.++|++ |.|. +.+ .+.+.|+....+ ..-.+++-++++++.+.++|+.+.+.. .+.++.-+
T Consensus 2 ~~~vCv~pl~~~~~~~~~l~e~ie~~~~~---G~~~~~~Y~~~~~~~~~~vL~~Y~~~g---~v~~~~w~~~~~~~~~~~ 75 (285)
T PF01697_consen 2 DFVVCVSPLFGNEDDWLQLIEWIEYHRLL---GVDHFYFYDNSSSPSVRKVLKEYERSG---YVEVIPWPLRPKFPDFPS 75 (285)
T ss_pred cEEEEccchhcccccHHHHHHHHHHHHHh---CCCEEEEEEccCCHHHHHhHHHHhhcC---eEEEEEcccccccCCccc
Confidence 466666 5565 333 667777766555 334678888889999999999887652 45555543
Q ss_pred ----C-----CcchHHHHHHHHhhcC--CCEEEEEeCCCCCCCC----ChHHHHHHHHhc
Q 026146 76 ----K-----KLGLGTAYIHGLKHAS--GSFVVIMDADLSHHPK----YLPSFIKKQLET 120 (242)
Q Consensus 76 ----~-----~~g~~~a~n~g~~~a~--~d~i~~lD~D~~~~~~----~l~~l~~~~~~~ 120 (242)
. ..|...|.|.++...+ .+|++|+|-|.++-|. +.+.+...+++.
T Consensus 76 ~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~ 135 (285)
T PF01697_consen 76 PFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREF 135 (285)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhc
Confidence 1 1245778888888775 6999999999984433 366666666553
No 108
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=96.65 E-value=0.063 Score=40.29 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=67.2
Q ss_pred eCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCE
Q 026146 16 PTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSF 95 (242)
Q Consensus 16 p~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~ 95 (242)
|.-+ ...+..+++++...- --+++|+-+...+...+.+.+... .+..+.++..+...|.+.++..+++....++
T Consensus 25 ~v~g-~pli~~~l~~l~~~g---~~~i~vv~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~g~~~al~~~~~~~~~~~ 98 (217)
T cd04181 25 PIAG-KPILEYIIERLARAG---IDEIILVVGYLGEQIEEYFGDGSK--FGVNIEYVVQEEPLGTAGAVRNAEDFLGDDD 98 (217)
T ss_pred EECC-eeHHHHHHHHHHHCC---CCEEEEEeccCHHHHHHHHcChhh--cCceEEEEeCCCCCccHHHHHHhhhhcCCCC
Confidence 3344 477888899887652 236666665432222222221100 1235666666656788999999998887889
Q ss_pred EEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEE
Q 026146 96 VVIMDADLSHHPKYLPSFIKKQLETGASIVTGT 128 (242)
Q Consensus 96 i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 128 (242)
++++++|...+.+ +.+++....+.+.++++..
T Consensus 99 ~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~ 130 (217)
T cd04181 99 FLVVNGDVLTDLD-LSELLRFHREKGADATIAV 130 (217)
T ss_pred EEEEECCeecCcC-HHHHHHHHHhcCCCEEEEE
Confidence 9999999987666 5566666666666665543
No 109
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=96.55 E-value=0.0022 Score=49.33 Aligned_cols=108 Identities=11% Similarity=0.032 Sum_probs=65.5
Q ss_pred EEEEEeC-ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHh
Q 026146 11 YSIIIPT-YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLK 89 (242)
Q Consensus 11 isiiip~-~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~ 89 (242)
+||+|.+ |++.+.|.+.++.+.+. . .--+|+||=++....... ...... ...++++..+.| .-.++-.-..
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~-~-~l~~IvVvWn~~~~~P~~--~~~~~~--~vpV~~~~~~~n--sLnnRF~p~~ 72 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASS-P-SLRKIVVVWNNPNPPPPS--SKWPST--GVPVRVVRSSRN--SLNNRFLPDP 72 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTS-T-TEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSH--HGGGGGS--T
T ss_pred CEEEEEecccchHHHHHHHHHHHcC-C-CCCeEEEEeCCCCCCCcc--cccCCC--CceEEEEecCCc--cHHhcCcCcc
Confidence 5889999 99999999999999544 2 234677775553222111 111111 246888875543 2223334445
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
..+++.|+.+|+|..++.+.|+-..+..++.+..+|+
T Consensus 73 ~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVG 109 (247)
T PF09258_consen 73 EIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVG 109 (247)
T ss_dssp T--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEE
T ss_pred ccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeC
Confidence 6679999999999999999999988888766555554
No 110
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.47 E-value=0.042 Score=48.07 Aligned_cols=104 Identities=16% Similarity=0.260 Sum_probs=65.8
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCC------hHHHHHHHHHHhCCCcEEEeeCC-------
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDG------TQEVVKQLQQLYGEDRILLRPRP------- 75 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~------t~~~l~~~~~~~~~~~~~~~~~~------- 75 (242)
...+||||+.|+.- .+|+.+++... .+.-||||.|++... ..+.+++++.... ..+.+++.+
T Consensus 55 ~~~aivvp~k~e~~---~~~~gvl~~ip-~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~~-~~~~~vhq~dp~~a~a 129 (694)
T PRK14502 55 KKMAIVLPIKDEDL---KVFEGVLSGIP-HDCLMIVISNSSKQEVDNFKNEKDIVNRFCRITH-RQAIVVHQKNPELANA 129 (694)
T ss_pred hCcEEEEEcCCCch---hHHhhHhhcCC-CCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhhc-CceEEEEcCCHHHHHH
Confidence 35899999999763 24555555533 466899999987632 3345555554321 234444322
Q ss_pred ---------------CCcchHHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 76 ---------------KKLGLGTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 76 ---------------~~~g~~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
-+-|++.++-.|+-.|+ .+||-|+|+|..++ +.+.+..+.+.
T Consensus 130 ~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~p-g~v~ey~~~ya 189 (694)
T PRK14502 130 IADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIP-GAVWEYAKHFA 189 (694)
T ss_pred HHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCC-chHHHHHHHHH
Confidence 12367777778877765 59999999997764 55666565543
No 111
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=96.33 E-value=0.14 Score=39.23 Aligned_cols=180 Identities=13% Similarity=0.040 Sum_probs=89.8
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee-CCCCcchHHHHHHHHhh---cCCC
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP-RPKKLGLGTAYIHGLKH---ASGS 94 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~-~~~~~g~~~a~n~g~~~---a~~d 94 (242)
+....+..+++.+.+. .--+|+|+-+. +.+.+..+.++ +.++. .+...|.......+++. ...+
T Consensus 22 ~GkPli~~~le~~~~~---~~d~VvVvt~~------~~i~~~~~~~g---~~~v~~~~~~~~Gt~r~~~~~~~l~~~~~d 89 (238)
T TIGR00466 22 FGKPMIVHVAENANES---GADRCIVATDD------ESVAQTCQKFG---IEVCMTSKHHNSGTERLAEVVEKLALKDDE 89 (238)
T ss_pred CCcCHHHHHHHHHHhC---CCCeEEEEeCH------HHHHHHHHHcC---CEEEEeCCCCCChhHHHHHHHHHhCCCCCC
Confidence 3456777788887543 12366666442 11333333332 33332 22222322233333332 2568
Q ss_pred EEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeec-CC------------ccCc--hhhHHHHHhHHHHHHHHHh
Q 026146 95 FVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRS-GG------------VHGW--NLMRKLTSRGANVLAQTLL 158 (242)
Q Consensus 95 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~-~~------------~~~~--~~~~~~~~~~~~~~~~~~~ 158 (242)
+++++|+|.- ++++.++.+++.+.+.+.++++......+ .. ..+. .+.+...............
T Consensus 90 ~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~t 169 (238)
T TIGR00466 90 RIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQT 169 (238)
T ss_pred EEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCCCCccccccc
Confidence 9999999988 89999999999886555666554322211 00 0000 0000000000000000000
Q ss_pred CCC-ccccccchhhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeee
Q 026146 159 WPG-VSDLTGSFRLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 159 ~~~-~~~~~g~~~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
... ...-.-|.++||++++++.-.... ...-.|..| .+|+...|++|..+..
T Consensus 170 pq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~le-qlr~le~g~~i~~~~~ 223 (238)
T TIGR00466 170 PVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLE-QLRVLYYGEKIHVKIA 223 (238)
T ss_pred ccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhH-HHhhhhcCCceEEEEe
Confidence 010 122245667899999999744322 222233433 4788999999988764
No 112
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=96.32 E-value=0.032 Score=42.95 Aligned_cols=96 Identities=13% Similarity=0.131 Sum_probs=54.3
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc---CCCEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA---SGSFVV 97 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a---~~d~i~ 97 (242)
...+..+++.+.+. ..-+|+|+.+. +. +.++...++ ..+.+...+...|.+.... ++... ..+.++
T Consensus 27 kpll~~~l~~l~~~---~i~~ivvv~~~--~~----i~~~~~~~~-~~v~~~~~~~~~gt~~~~~-~~~~~~~~~~~~vl 95 (245)
T PRK05450 27 KPMIVRVYERASKA---GADRVVVATDD--ER----IADAVEAFG-GEVVMTSPDHPSGTDRIAE-AAAKLGLADDDIVV 95 (245)
T ss_pred cCHHHHHHHHHHhc---CCCeEEEECCc--HH----HHHHHHHcC-CEEEECCCcCCCchHHHHH-HHHhcCCCCCCEEE
Confidence 45566777777654 12366665531 22 233333322 2343333333334433332 33322 468899
Q ss_pred EEeCCC-CCCCCChHHHHHHHHhcCCcEEEE
Q 026146 98 IMDADL-SHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 98 ~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
++++|. .++++.+.++++.+.+++.++++.
T Consensus 96 v~~~D~Pli~~~~l~~li~~~~~~~~~~~~~ 126 (245)
T PRK05450 96 NVQGDEPLIPPEIIDQVAEPLANPEADMATL 126 (245)
T ss_pred EecCCCCCCCHHHHHHHHHHHhcCCCCeEee
Confidence 999998 589999999999886655565554
No 113
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=96.26 E-value=0.081 Score=38.77 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=64.6
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC-CcchHHHHHHHHh-hcCCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK-KLGLGTAYIHGLK-HASGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~a~n~g~~-~a~~d~i 96 (242)
+....+...++.+.+.. .-+++||-+... .+..+.+... ..+.++.... ..|...+...|++ ....+++
T Consensus 23 ~g~pll~~~i~~l~~~~---~~~iivv~~~~~---~~~~~~~~~~---~~v~~v~~~~~~~g~~~si~~~l~~~~~~~~v 93 (188)
T TIGR03310 23 KGKTILEHVVDNALRLF---FDEVILVLGHEA---DELVALLANH---SNITLVHNPQYAEGQSSSIKLGLELPVQSDGY 93 (188)
T ss_pred CCeeHHHHHHHHHHHcC---CCcEEEEeCCcH---HHHHHHhccC---CCeEEEECcChhcCHHHHHHHHhcCCCCCCEE
Confidence 44677788888876542 225666644322 2233333221 2356555432 2578888888888 4567999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+++++|.. ++++.++.+++.+.+.+.++++.
T Consensus 94 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 94 LFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 99999985 78999999998876655555554
No 114
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.23 E-value=0.1 Score=39.37 Aligned_cols=106 Identities=12% Similarity=0.086 Sum_probs=64.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhcC
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a~ 92 (242)
.+|.-++ ..+...++++.+.- --+|+|+-+...+...+.+.+ ...+..+.+.... ...|.+.+...++....
T Consensus 24 llpi~g~-~li~~~l~~l~~~g---i~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~~~~~~~~ 96 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAAG---IRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIKKALPLLG 96 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHCC---CCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHHHHHHhcC
Confidence 3444454 78888999887652 225666654332222222222 1122345555544 45688899999999876
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHH--hcCCcEEEE
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQL--ETGASIVTG 127 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~--~~~~~~v~~ 127 (242)
.+.++++.+|...+.++.. +++... +.+..+.+.
T Consensus 97 ~~~~lv~~~D~i~~~~~~~-~~~~~~~~~~~~~~~~~ 132 (221)
T cd06422 97 DEPFLVVNGDILWDGDLAP-LLLLHAWRMDALLLLLP 132 (221)
T ss_pred CCCEEEEeCCeeeCCCHHH-HHHHHHhccCCCceEEE
Confidence 6889999999988776544 555544 334444443
No 115
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=96.23 E-value=0.062 Score=39.72 Aligned_cols=93 Identities=15% Similarity=0.191 Sum_probs=59.6
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC--CCcchHHHHHHHHhhcCCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP--KKLGLGTAYIHGLKHASGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~--~~~g~~~a~n~g~~~a~~d~i 96 (242)
+....+..+++.+... --+|+|+-+.. .+.+.+. .+.++... ...|...+...|++....+++
T Consensus 28 ~g~~ll~~~i~~l~~~----~~~i~vv~~~~----~~~~~~~-------~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~v 92 (193)
T PRK00317 28 NGKPLIQHVIERLAPQ----VDEIVINANRN----LARYAAF-------GLPVIPDSLADFPGPLAGILAGLKQARTEWV 92 (193)
T ss_pred CCEEHHHHHHHHHhhh----CCEEEEECCCC----hHHHHhc-------CCcEEeCCCCCCCCCHHHHHHHHHhcCCCeE
Confidence 3445667777777521 22677764421 1112211 23344432 236778889999998888999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+++++|.. ++++.++.+++.+.+.+..++.
T Consensus 93 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 123 (193)
T PRK00317 93 LVVPCDTPFIPPDLVARLAQAAGKDDADVAW 123 (193)
T ss_pred EEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE
Confidence 99999986 7999999999987654444443
No 116
>PLN02400 cellulose synthase
Probab=96.21 E-value=0.0064 Score=55.21 Aligned_cols=53 Identities=19% Similarity=0.286 Sum_probs=43.2
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCCC-CCCChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLSH-HPKYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~ 120 (242)
.+.|+.++++.| |++|+|..++-+ .++||+-+|.|-.. ++..+...+-.+.+.
T Consensus 524 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~ 586 (1085)
T PLN02400 524 RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
T ss_pred eeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheecc
Confidence 567777776666 899999999854 69999999999886 688899988887653
No 117
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=96.10 E-value=0.098 Score=39.92 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=64.4
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCC-
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASG- 93 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~- 93 (242)
+|..+. ..+..+++++..+- --+++|+-....+...+.+.++... .+..+.+.......|.+.++..+......
T Consensus 26 lpv~g~-pli~~~l~~l~~~g---~~~v~iv~~~~~~~~~~~l~~~~~~-~~~~i~~~~~~~~~G~~~al~~a~~~~~~~ 100 (233)
T cd06425 26 VEFCNK-PMIEHQIEALAKAG---VKEIILAVNYRPEDMVPFLKEYEKK-LGIKITFSIETEPLGTAGPLALARDLLGDD 100 (233)
T ss_pred CeECCc-chHHHHHHHHHHCC---CcEEEEEeeeCHHHHHHHHhccccc-CCeEEEeccCCCCCccHHHHHHHHHHhccC
Confidence 344454 77888999887652 2256666553333333333332111 12234443344557888899888887653
Q ss_pred -CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 94 -SFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 94 -d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+-++++++|...+.+ +..+++..++.+.++.+.
T Consensus 101 ~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~~~~~ 134 (233)
T cd06425 101 DEPFFVLNSDVICDFP-LAELLDFHKKHGAEGTIL 134 (233)
T ss_pred CCCEEEEeCCEeeCCC-HHHHHHHHHHcCCCEEEE
Confidence 446777999887655 588888877766665544
No 118
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=96.09 E-value=0.11 Score=38.34 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=63.3
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhc---CCC
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHA---SGS 94 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a---~~d 94 (242)
+....+..+++.+.+. .--+++||-+... +....+.+.... ...+.++..+ ...|...+.-.|++.+ ..+
T Consensus 24 ~g~~ll~~~i~~~~~~---~~~~i~vv~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d 97 (190)
T TIGR03202 24 GETTLGSASLKTALSS---RLSKVIVVIGEKY-AHLSWLDPYLLA--DERIMLVCCRDACEGQAHSLKCGLRKAEAMGAD 97 (190)
T ss_pred CCccHHHHHHHHHHhC---CCCcEEEEeCCcc-chhhhhhHhhhc--CCCeEEEECCChhhhHHHHHHHHHHHhccCCCC
Confidence 4566677777665432 2236777765432 222222222111 1234444332 2357888999999876 479
Q ss_pred EEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEE
Q 026146 95 FVVIMDADLS-HHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 95 ~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+++++++|.- ++++.++.+++.+.+.+.+++.
T Consensus 98 ~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~ 130 (190)
T TIGR03202 98 AVVILLADQPFLTADVINALLALAKRRPDDYVA 130 (190)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEE
Confidence 9999999988 8899999999987654555544
No 119
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=96.00 E-value=0.066 Score=39.03 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=64.4
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhcCCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a~~d~i~ 97 (242)
+....+..+++.+.+. . -+|+|+-+..... ... ..+.++... ...|...+...|++....++++
T Consensus 24 ~g~~ll~~~i~~l~~~-~---~~iivv~~~~~~~----~~~-------~~~~~v~~~~~~~G~~~si~~~l~~~~~~~vl 88 (181)
T cd02503 24 GGKPLLEHVLERLKPL-V---DEVVISANRDQER----YAL-------LGVPVIPDEPPGKGPLAGILAALRAAPADWVL 88 (181)
T ss_pred CCEEHHHHHHHHHHhh-c---CEEEEECCCChHH----Hhh-------cCCcEeeCCCCCCCCHHHHHHHHHhcCCCeEE
Confidence 4567788888888654 1 2677775533221 111 134555543 3568899999999998899999
Q ss_pred EEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 98 IMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
++.+|.. ++++.+..+++.+ .++.++++.
T Consensus 89 v~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 89 VLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred EEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 9999986 7899999999887 445555553
No 120
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=96.00 E-value=0.17 Score=38.08 Aligned_cols=174 Identities=14% Similarity=0.210 Sum_probs=94.5
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHh-CCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLY-GEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIM 99 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~l 99 (242)
...+...++.+.+.- --+|+|+-+-..+...+.+. ... .+..+.+.......|.+.+.-.|++....+.++++
T Consensus 29 ~pli~~~l~~l~~~g---~~~v~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~ 102 (223)
T cd06915 29 RPFLEYLLEYLARQG---ISRIVLSVGYLAEQIEEYFG---DGYRGGIRIYYVIEPEPLGTGGAIKNALPKLPEDQFLVL 102 (223)
T ss_pred cchHHHHHHHHHHCC---CCEEEEEcccCHHHHHHHHc---CccccCceEEEEECCCCCcchHHHHHHHhhcCCCCEEEE
Confidence 477888888887641 22566665432222222222 111 12234455555667888899999988877889999
Q ss_pred eCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCC---CccccccchhhcchHH
Q 026146 100 DADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWP---GVSDLTGSFRLYKKSV 176 (242)
Q Consensus 100 D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~~~rr~~ 176 (242)
.+|..++. .+..+++.+.+.+.+++.......... .+.... . ... +.+......+ ......+|..+++++.
T Consensus 103 ~~D~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~v~-~-d~~-~~v~~~~ek~~~~~~~~~~~Giy~~~~~~ 176 (223)
T cd06915 103 NGDTYFDV-DLLALLAALRASGADATMALRRVPDAS--RYGNVT-V-DGD-GRVIAFVEKGPGAAPGLINGGVYLLRKEI 176 (223)
T ss_pred ECCcccCC-CHHHHHHHHHhCCCcEEEEEEECCCCC--cceeEE-E-CCC-CeEEEEEeCCCCCCCCcEEEEEEEECHHH
Confidence 99987754 577888877666666655432221111 111000 0 000 0000000001 1224457788999999
Q ss_pred HHHhhhcccCCCcccchHHHHHHHHcCCceEEeee
Q 026146 177 LEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 177 ~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
++.+... .+....++..++...| ++...+.
T Consensus 177 l~~~~~~----~~~~~~~~~~~l~~~~-~v~~~~~ 206 (223)
T cd06915 177 LAEIPAD----AFSLEADVLPALVKRG-RLYGFEV 206 (223)
T ss_pred HhhCCcc----CCChHHHHHHHHHhcC-cEEEEec
Confidence 9876321 1212235666677677 7766553
No 121
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=95.90 E-value=0.13 Score=39.96 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=67.4
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc--
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA-- 91 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a-- 91 (242)
.+|.-++ ..|...|+++.+.. .--+|+|+-....+...+.+.+.... .+..+.++......|.+.|...+....
T Consensus 25 llpv~g~-plI~~~l~~l~~~~--gi~~i~iv~~~~~~~i~~~l~~~~~~-~~~~i~~~~~~~~~Gt~~al~~a~~~l~~ 100 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAKVP--DLKEVLLIGFYPESVFSDFISDAQQE-FNVPIRYLQEYKPLGTAGGLYHFRDQILA 100 (257)
T ss_pred cCeECCe-eHHHHHHHHHHhcC--CCcEEEEEecCCHHHHHHHHHhcccc-cCceEEEecCCccCCcHHHHHHHHHHhhc
Confidence 4555565 88888999887631 12266666554333333333322111 123466655556678888887777654
Q ss_pred -CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 92 -SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 92 -~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
..++++++.+|...+. -+..+++...+.+.++.+.
T Consensus 101 ~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~~~~~tl~ 136 (257)
T cd06428 101 GNPSAFFVLNADVCCDF-PLQELLEFHKKHGASGTIL 136 (257)
T ss_pred cCCCCEEEEcCCeecCC-CHHHHHHHHHHcCCCEEEE
Confidence 2578899999988655 4888888877766665443
No 122
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.016 Score=43.54 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=66.7
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC--CcchHHHHHHHHhhcCCCEEE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK--KLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~--~~g~~~a~n~g~~~a~~d~i~ 97 (242)
..+.|...+++|.+. ..-|++||-+|=. .+.++.+.++++. ..+++.++. ..+-+.++-.|.+..+++ ++
T Consensus 30 gr~ii~~~i~~L~~~---gi~e~vvV~~g~~---~~lve~~l~~~~~-~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fi 101 (239)
T COG1213 30 GREIIYRTIENLAKA---GITEFVVVTNGYR---ADLVEEFLKKYPF-NAKIVINSDYEKTNTGYSLLLAKDYMDGR-FI 101 (239)
T ss_pred CeEeHHHHHHHHHHc---CCceEEEEeccch---HHHHHHHHhcCCc-ceEEEeCCCcccCCceeEEeeehhhhcCc-EE
Confidence 346778889988766 4558999987743 5567777777763 566666542 223366788888888888 88
Q ss_pred EEeCCCCCCCCChHHHHHHH
Q 026146 98 IMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 98 ~lD~D~~~~~~~l~~l~~~~ 117 (242)
++++|.+++|.+++.++++-
T Consensus 102 i~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 102 LVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred EEeCCEeecHHHHHHHHhCc
Confidence 89999999999999999863
No 123
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=95.67 E-value=0.36 Score=38.29 Aligned_cols=105 Identities=15% Similarity=0.227 Sum_probs=66.9
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH--hCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL--YGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
.+|.++. +.|...|+.+... .--+|++|-.... .+.++++... .-+.++.+...+...|.+.|...|....
T Consensus 28 Llpv~gk-PmI~~~l~~l~~a---Gi~~I~ii~~~~~---~~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al~~a~~~i 100 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLMLA---GIRDILIISTPQD---TPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFI 100 (292)
T ss_pred EeEECCE-EHHHHHHHHHHHC---CCCEEEEEecCCc---hHHHHHHHcCccccCceeEEEECCCCCCHHHHHHHHHHHh
Confidence 6777886 7888888888765 2236776654321 1223333321 1124677888877889999999998887
Q ss_pred CC-CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 92 SG-SFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 92 ~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
.. ++++++ +|..+....+..+++...+.+.++.+
T Consensus 101 ~~~~~~lv~-gD~i~~~~~l~~ll~~~~~~~~~~tv 135 (292)
T PRK15480 101 GGDDCALVL-GDNIFYGHDLPKLMEAAVNKESGATV 135 (292)
T ss_pred CCCCEEEEE-CCeeeeccCHHHHHHHHHhCCCCeEE
Confidence 54 655554 66665555688888877655555543
No 124
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=95.60 E-value=0.56 Score=34.92 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=59.4
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC-CcchHHHHHHHHhhcCCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK-KLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~a~n~g~~~a~~d~i~ 97 (242)
+....++.+++.+... .-+++|+-+.. +....... ..+.++.... ..|...+.-.|++....++++
T Consensus 31 ~g~~ll~~~i~~l~~~----~~~ivvv~~~~-----~~~~~~~~----~~~~~i~~~~~~~G~~~si~~~l~~~~~~~vl 97 (200)
T PRK02726 31 QGVPLLQRVARIAAAC----ADEVYIITPWP-----ERYQSLLP----PGCHWLREPPPSQGPLVAFAQGLPQIKTEWVL 97 (200)
T ss_pred CCEeHHHHHHHHHHhh----CCEEEEECCCH-----HHHHhhcc----CCCeEecCCCCCCChHHHHHHHHHhCCCCcEE
Confidence 3445677788877543 12566664321 12222211 1355665433 368999999999998889999
Q ss_pred EEeCCCC-CCCCChHHHHHHHHh
Q 026146 98 IMDADLS-HHPKYLPSFIKKQLE 119 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~~ 119 (242)
++++|.- ++++.++.+++...+
T Consensus 98 v~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 98 LLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred EEeCCCCCCCHHHHHHHHHHhhc
Confidence 9999987 789999999988754
No 125
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=95.54 E-value=0.012 Score=45.59 Aligned_cols=113 Identities=12% Similarity=0.038 Sum_probs=54.8
Q ss_pred cCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchh
Q 026146 91 ASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 91 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
...+|++++|+|+.+...-|..++..+. +..++.+|.+........ ...... .. . ..........|+.+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~-~~~~~yiG~~~~~~~~~~----~~~~~~---~~--~-~~~~~~f~~GGaG~ 153 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYD-PSEPIYIGRPSGDRPIEI----IHRFNP---NK--S-KDSGFWFATGGAGY 153 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS--TTS--EEE-EE--------------------------------EE-GGG-E
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCC-CccCEEeeeeccCcccee----eccccc---cc--c-CcCceEeeCCCeeH
Confidence 3569999999999987777777776654 466778887764321100 000000 00 0 00011223456668
Q ss_pred hcchHHHHHhhhc-----cc----CCCcccchHHHHHHHH-cCCceEEeeeeee
Q 026146 171 LYKKSVLEDVISS-----CV----SKGYVFQMEMIVRACR-KGYHIEEVPITFV 214 (242)
Q Consensus 171 ~~rr~~~~~~~~~-----~~----~~~~~~d~~~~~~~~~-~g~~i~~~p~~~~ 214 (242)
+++|.+++++... .. ...+.+|..+..-+.. .|.+....|.-..
T Consensus 154 vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs 207 (252)
T PF02434_consen 154 VLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHS 207 (252)
T ss_dssp EEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---
T ss_pred HHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcc
Confidence 9999999998221 11 1235789999888877 8988887764433
No 126
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=95.44 E-value=0.37 Score=38.10 Aligned_cols=104 Identities=15% Similarity=0.172 Sum_probs=65.3
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH--hCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL--YGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
.+|.++. +.+...|+.+... .--+|+||-.... .+.++++... .-+.++.+...+...|.+.|.-.|....
T Consensus 24 Llpv~gk-PmI~~~L~~l~~a---Gi~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al~~a~~~l 96 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLMLA---GIRDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAFIIGEDFI 96 (286)
T ss_pred eeEECCE-EhHHHHHHHHHHC---CCCEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCCHHHHHHHHHHHh
Confidence 5777886 7888888888754 2236666643221 1223333221 1124577777777889999999999887
Q ss_pred CC-CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEE
Q 026146 92 SG-SFVVIMDADLSHHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 92 ~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 125 (242)
.. +++++ -+|..+...-+..+++...+.+.++.
T Consensus 97 ~~~~~~li-~gD~i~~~~~l~~ll~~~~~~~~~~t 130 (286)
T TIGR01207 97 GGDPSALV-LGDNIFYGHDLSDLLKRAAARESGAT 130 (286)
T ss_pred CCCCEEEE-ECCEeccccCHHHHHHHHHhcCCCcE
Confidence 64 45555 57766656678888877655555543
No 127
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=95.44 E-value=0.27 Score=37.59 Aligned_cols=91 Identities=11% Similarity=0.166 Sum_probs=51.9
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeC
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDA 101 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~ 101 (242)
..+..+++.+.+.. .--+|+|+-+. + .+.++.+.++ ..+.+.......|.+ ..-.++.....|.++++++
T Consensus 28 Pli~~~i~~l~~~~--~~~~ivv~t~~--~----~i~~~~~~~~-~~v~~~~~~~~~g~~-~~~~a~~~~~~d~~lv~~~ 97 (238)
T PRK13368 28 PMIQHVYERAAQAA--GVEEVYVATDD--Q----RIEDAVEAFG-GKVVMTSDDHLSGTD-RLAEVMLKIEADIYINVQG 97 (238)
T ss_pred CHHHHHHHHHHhcC--CCCeEEEECCh--H----HHHHHHHHcC-CeEEecCccCCCccH-HHHHHHHhCCCCEEEEEcC
Confidence 44556677776541 12366665432 2 2333333332 334332223333433 3444566555689999999
Q ss_pred CCC-CCCCChHHHHHHHHhcCC
Q 026146 102 DLS-HHPKYLPSFIKKQLETGA 122 (242)
Q Consensus 102 D~~-~~~~~l~~l~~~~~~~~~ 122 (242)
|.. +.+..+.++++.+.+.+.
T Consensus 98 D~P~i~~~~i~~l~~~~~~~~~ 119 (238)
T PRK13368 98 DEPMIRPRDIDTLIQPMLDDPS 119 (238)
T ss_pred CcCcCCHHHHHHHHHHHHHCCC
Confidence 984 789999999998865443
No 128
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=95.43 E-value=0.25 Score=37.19 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=60.8
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc---CCCE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA---SGSF 95 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a---~~d~ 95 (242)
+....+..+++.+.+.. ..-+++||-+... .+....+........+.++... .|...+...|++.. ..++
T Consensus 26 ~Gkpll~~~i~~l~~~~--~~~~ivVv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~si~~al~~~~~~~~~~ 98 (218)
T cd02516 26 GGKPVLEHTLEAFLAHP--AIDEIVVVVPPDD---IDLAKELAKYGLSKVVKIVEGG--ATRQDSVLNGLKALPDADPDI 98 (218)
T ss_pred CCeEHHHHHHHHHhcCC--CCCEEEEEeChhH---HHHHHHHHhcccCCCeEEECCc--hHHHHHHHHHHHhcccCCCCE
Confidence 45577888888886541 1236676655322 2222222111111234444432 35678899999886 4789
Q ss_pred EEEEeCCCC-CCCCChHHHHHHHHhcCC
Q 026146 96 VVIMDADLS-HHPKYLPSFIKKQLETGA 122 (242)
Q Consensus 96 i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 122 (242)
++++++|.- ++++.++.+++.+.+.+.
T Consensus 99 vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 99 VLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred EEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 999999977 889999999998865443
No 129
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=95.40 E-value=0.39 Score=36.60 Aligned_cols=185 Identities=12% Similarity=0.084 Sum_probs=93.5
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCC
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASG 93 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~ 93 (242)
.+|.-+. ..+...++++.+. .--+++|+-+...+...+.+.+.. .+ +..+.++......|.+.+...|......
T Consensus 25 l~~i~g~-~li~~~l~~l~~~---~~~~i~vv~~~~~~~~~~~~~~~~-~~-~~~i~~~~~~~~~g~~~sl~~a~~~i~~ 98 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREA---GIEDIGIVVGPTGEEIKEALGDGS-RF-GVRITYILQEEPLGLAHAVLAARDFLGD 98 (236)
T ss_pred eeEECCc-chHHHHHHHHHHC---CCCEEEEEcCCCHHHHHHHhcchh-hc-CCeEEEEECCCCCChHHHHHHHHHhcCC
Confidence 3444444 7788888888764 223677665543222222222211 11 2346666666667888889888887653
Q ss_pred CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhC---CCccccccchh
Q 026146 94 SFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLW---PGVSDLTGSFR 170 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~ 170 (242)
+-++++.+|...+.+ +..+++.+.+.+.+++.......+.. ...... . .. ......... ........|..
T Consensus 99 ~~~li~~~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~-~-d~--~~v~~~~ek~~~~~~~~~~~Giy 171 (236)
T cd04189 99 EPFVVYLGDNLIQEG-ISPLVRDFLEEDADASILLAEVEDPR--RFGVAV-V-DD--GRIVRLVEKPKEPPSNLALVGVY 171 (236)
T ss_pred CCEEEEECCeecCcC-HHHHHHHHHhcCCceEEEEEECCCcc--cceEEE-E-cC--CeEEEEEECCCCCCCCEEEEEEE
Confidence 445668889887665 55566666555666544322211111 000000 0 00 000000000 01122345666
Q ss_pred hcchHHHHHhhhcccC-CCcccchHHHHHHHHcCCceEEeee
Q 026146 171 LYKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 171 ~~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
.++.++++.+-..... .+-.+-.++...+...|.++...+.
T Consensus 172 ~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~~ 213 (236)
T cd04189 172 AFTPAIFDAISRLKPSWRGELEITDAIQWLIDRGRRVGYSIV 213 (236)
T ss_pred EeCHHHHHHHHhcCCCCCCeEEHHHHHHHHHHcCCcEEEEEc
Confidence 7898888766211111 1111113566677788887776654
No 130
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=95.27 E-value=0.22 Score=38.04 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=61.2
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVI 98 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ 98 (242)
+....+..+++.+.+... .-+++|+-+.... . +.+.++.... .+.++..+.. +.-.....+++....+++++
T Consensus 22 ~Gkpli~~~i~~l~~~~~--~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~-~~l~~~~~~~~~~~~d~vli 93 (233)
T cd02518 22 GGKPLLEHLLDRLKRSKL--IDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEE-DVLGRYYQAAEEYNADVVVR 93 (233)
T ss_pred CCccHHHHHHHHHHhCCC--CCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCch-hHHHHHHHHHHHcCCCEEEE
Confidence 445777888888865421 2256766554431 1 2233333322 3555655543 22222333444556799999
Q ss_pred EeCCCC-CCCCChHHHHHHHHhcCCcEEE
Q 026146 99 MDADLS-HHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 99 lD~D~~-~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+++|.- ++++.++++++.+...+.+++.
T Consensus 94 ~~~D~P~i~~~~i~~li~~~~~~~~~~~~ 122 (233)
T cd02518 94 ITGDCPLIDPEIIDAVIRLFLKSGADYTS 122 (233)
T ss_pred eCCCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence 999988 8899999999988766677765
No 131
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=95.24 E-value=0.18 Score=38.78 Aligned_cols=184 Identities=15% Similarity=0.151 Sum_probs=104.1
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC--CCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG--EDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~--~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
+|..++...|...|+.+... ..-++|+|-.+.. .+.+.++..... ...+.++..+...|.+.|.-.+.....
T Consensus 25 l~i~g~~pli~~~l~~l~~~---g~~~ii~V~~~~~---~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~ 98 (248)
T PF00483_consen 25 LPIGGKYPLIDYVLENLANA---GIKEIIVVVNGYK---EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIE 98 (248)
T ss_dssp SEETTEEEHHHHHHHHHHHT---TCSEEEEEEETTT---HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHT
T ss_pred ceecCCCcchhhhhhhhccc---CCceEEEEEeecc---cccccccccccccccccceeeecccccchhHHHHHHHHHhh
Confidence 45556557888899998775 2336445544322 233444433322 124778777777899999999999887
Q ss_pred CCE----EEEEeCCCCCCCCChHHHHHHHHhcCCc--EEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCC----c
Q 026146 93 GSF----VVIMDADLSHHPKYLPSFIKKQLETGAS--IVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPG----V 162 (242)
Q Consensus 93 ~d~----i~~lD~D~~~~~~~l~~l~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 162 (242)
.+- ++++.+|...+. .+..+++.+.+.+.+ +.+...........+.-... . ...+......+. .
T Consensus 99 ~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d--~---~~~V~~~~EKP~~~~~~ 172 (248)
T PF00483_consen 99 EEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVD--E---DGRVIRIVEKPDNPNAS 172 (248)
T ss_dssp TSEE-SEEEEETTEEEEST-THHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEE--T---TSEEEEEEESCSSHSHS
T ss_pred hccccceEEEEeccccccc-hhhhHHHhhhccccccccccccccccccccceeeeec--c---ceeEEEEeccCcccccc
Confidence 654 999999988777 778888887766653 33332222111100000000 0 000011111111 1
Q ss_pred cccccchhhcchHHHHHhhhcccC--CCcccchHHHHHHHHcCCceEEee
Q 026146 163 SDLTGSFRLYKKSVLEDVISSCVS--KGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 163 ~~~~g~~~~~rr~~~~~~~~~~~~--~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
....++.+++++++++.+...... ....+-.+....+...|..+....
T Consensus 173 ~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~~~~ 222 (248)
T PF00483_consen 173 NLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVYAFI 222 (248)
T ss_dssp SEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred eeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceEEEE
Confidence 234567778999999988322122 222223567778888887765544
No 132
>PLN02190 cellulose synthase-like protein
Probab=95.21 E-value=0.028 Score=49.45 Aligned_cols=52 Identities=12% Similarity=0.165 Sum_probs=39.6
Q ss_pred EEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCCC-CCCChHHHHHHHHhc
Q 026146 69 ILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLSH-HPKYLPSFIKKQLET 120 (242)
Q Consensus 69 ~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~ 120 (242)
+.|+.++++.| |++|+|..++-+ .+++|+-+|.|-.. +++.+.+.+-.+.++
T Consensus 254 LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~ld~ 315 (756)
T PLN02190 254 LVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFLQK 315 (756)
T ss_pred EEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhcCC
Confidence 44444444444 899999998654 69999999999875 688899988887643
No 133
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=95.20 E-value=0.12 Score=38.23 Aligned_cols=93 Identities=17% Similarity=0.288 Sum_probs=64.3
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCc-chHHHHHHHHhhcCCCEE
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKL-GLGTAYIHGLKHASGSFV 96 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~a~n~g~~~a~~d~i 96 (242)
.|....++..++.|..|. + .++|.-+...+ . ... ..+.++...... |+-.+.-.|+++..++++
T Consensus 26 ~~g~~lie~v~~~L~~~~---~-~vvi~~~~~~~--~--~~~-------~g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~ 90 (192)
T COG0746 26 LNGRPLIEHVIDRLRPQV---D-VVVISANRNQG--R--YAE-------FGLPVVPDELPGFGPLAGILAALRHFGTEWV 90 (192)
T ss_pred eCCeEHHHHHHHHhcccC---C-EEEEeCCCchh--h--hhc-------cCCceeecCCCCCCCHHHHHHHHHhCCCCeE
Confidence 345556677777776653 3 45555444322 1 111 135566655555 999999999999999999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v 125 (242)
+|+=.|.- ++++.++.+.....+.+..++
T Consensus 91 ~v~~~D~P~i~~~lv~~l~~~~~~~~~~~~ 120 (192)
T COG0746 91 LVLPCDMPFIPPELVERLLSAFKQTGAAIV 120 (192)
T ss_pred EEEecCCCCCCHHHHHHHHHhhcccCCcEE
Confidence 99999988 788899999998876553333
No 134
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=95.09 E-value=0.25 Score=41.89 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=66.3
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS- 92 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~- 92 (242)
++|..+. ..+...++++.+. .--+++++-.... .++ .++.... ..+.++..+...|.+.+...+++...
T Consensus 25 l~pi~g~-pli~~~l~~l~~~---gi~~iiiv~~~~~---~~i-~~~~~~~--~~i~~~~~~~~~Gt~~al~~a~~~l~~ 94 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREA---GAGRIVLVVGHQA---EKV-REHFAGD--GDVSFALQEEQLGTGHAVACAAPALDG 94 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhc---CCCeEEEEECCCH---HHH-HHHhccC--CceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 3444443 6677778877654 2235666654322 222 2222221 24666666667788889998888764
Q ss_pred -CCEEEEEeCCC-CCCCCChHHHHHHHHhcCCcEEE
Q 026146 93 -GSFVVIMDADL-SHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 93 -~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
.++++++++|. .+++..++++++.+.+.+.++.+
T Consensus 95 ~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v 130 (459)
T PRK14355 95 FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTV 130 (459)
T ss_pred cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEE
Confidence 47999999998 57888899999887665555543
No 135
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=95.08 E-value=0.048 Score=40.60 Aligned_cols=70 Identities=11% Similarity=0.010 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCCC--hHHHHHHHHHHhCCCcEEEeeCCCCc-------c---hHHHHHHHHhhcC-------CCEEEE
Q 026146 38 VDFEIIVVDDGSPDG--TQEVVKQLQQLYGEDRILLRPRPKKL-------G---LGTAYIHGLKHAS-------GSFVVI 98 (242)
Q Consensus 38 ~~~eiivvd~~s~d~--t~~~l~~~~~~~~~~~~~~~~~~~~~-------g---~~~a~n~g~~~a~-------~d~i~~ 98 (242)
+++.+|||+|++.-. +..+|++. +...+++..+... . ....||.|++..+ .-.|.|
T Consensus 9 ~~l~WIVVEd~~~~~~~v~~lL~~s-----gl~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyF 83 (207)
T PF03360_consen 9 PPLHWIVVEDSEETTPLVARLLRRS-----GLPYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYF 83 (207)
T ss_dssp SSEEEEEEESSSS--HHHHHHHHHH-----TSEEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHc-----CCceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEE
Confidence 588999999987432 44444443 3344444433311 1 1558999998764 467889
Q ss_pred EeCCCCCCCCChHH
Q 026146 99 MDADLSHHPKYLPS 112 (242)
Q Consensus 99 lD~D~~~~~~~l~~ 112 (242)
.|+|...+...+++
T Consensus 84 aDDdNtYdl~LF~e 97 (207)
T PF03360_consen 84 ADDDNTYDLRLFDE 97 (207)
T ss_dssp --TTSEE-HHHHHH
T ss_pred CCCCCeeeHHHHHH
Confidence 99999888777777
No 136
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=94.85 E-value=0.97 Score=36.36 Aligned_cols=44 Identities=11% Similarity=0.147 Sum_probs=38.3
Q ss_pred CCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 76 KKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 76 ~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
.-+-.-..||.|++.|+++|++++|.|..+.+++-+.+.+.+.+
T Consensus 111 ~~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~ 154 (317)
T PF13896_consen 111 ALYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARR 154 (317)
T ss_pred CCCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhh
Confidence 34557889999999999999999999999999998888877654
No 137
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.80 E-value=0.4 Score=41.02 Aligned_cols=184 Identities=11% Similarity=0.136 Sum_probs=96.2
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS- 92 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~- 92 (242)
.+|..+ ...|..+++++.+.- .-+++++-....+ . +.+...... ..+.++..+...|.+.+.-.|++...
T Consensus 26 llpi~g-kpli~~~l~~l~~~g---~~~iivvv~~~~~---~-i~~~~~~~~-~~~~~~~~~~~~Gt~~si~~al~~l~~ 96 (482)
T PRK14352 26 LHTLAG-RSMLGHVLHAAAGLA---PQHLVVVVGHDRE---R-VAPAVAELA-PEVDIAVQDEQPGTGHAVQCALEALPA 96 (482)
T ss_pred eceeCC-ccHHHHHHHHHHhcC---CCcEEEEECCCHH---H-HHHHhhccC-CccEEEeCCCCCCcHHHHHHHHHHhcc
Confidence 344444 457888888887642 2255555443222 2 222222211 23555555666788888888888754
Q ss_pred --CCEEEEEeCCC-CCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCC-------c
Q 026146 93 --GSFVVIMDADL-SHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPG-------V 162 (242)
Q Consensus 93 --~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 162 (242)
.++++++++|. .+++..++++++.+.+.+.++.+......+....+...... . ..+......+. .
T Consensus 97 ~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~~~p~~yg~~~~~~--~---g~V~~~~EKp~~~~~~~~~ 171 (482)
T PRK14352 97 DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTLDDPTGYGRILRDQ--D---GEVTAIVEQKDATPSQRAI 171 (482)
T ss_pred CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeecCCCCCCCEEEECC--C---CCEEEEEECCCCCHHHhhc
Confidence 47899999998 47888899999887765555433221111111011000000 0 00000000000 1
Q ss_pred cccccchhhcchHHHHHhhhcc-cCC--CcccchHHHHHHHHcCCceEEeee
Q 026146 163 SDLTGSFRLYKKSVLEDVISSC-VSK--GYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 163 ~~~~g~~~~~rr~~~~~~~~~~-~~~--~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
.....+..+|+.+.|.++.... ... ...+=.++...+...|+++...+.
T Consensus 172 ~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~V~~~~~ 223 (482)
T PRK14352 172 REVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAREAGHRVGAHHA 223 (482)
T ss_pred ceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHHHCCCeEEEEec
Confidence 1133556789999987652221 111 111125677788888988877664
No 138
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=94.75 E-value=1.4 Score=35.02 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=66.3
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH-------------------HHHH-hCCCcEEEee
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ-------------------LQQL-YGEDRILLRP 73 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~-------------------~~~~-~~~~~~~~~~ 73 (242)
.+|..+. +.|...++.+... .--+|+|+-.-..+.-.+.+.. +... .++.++.++.
T Consensus 28 LvpV~gk-PiI~~vl~~l~~~---Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (297)
T TIGR01105 28 MLPIVDK-PMIQYIVDEIVAA---GIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVR 103 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHC---CCCEEEEEecCChHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCCCceEEEee
Confidence 4555554 4788888888765 2336777766433322222211 0000 1123577887
Q ss_pred CCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCC-------ChHHHHHHHHhcCCcEEEE
Q 026146 74 RPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPK-------YLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 74 ~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~-------~l~~l~~~~~~~~~~~v~~ 127 (242)
.++..|.+.|.-.+......+-++++.+|..+++. .+..+++.+.+.+..++..
T Consensus 104 q~~~lGtg~Av~~a~~~l~~~~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~~~~ 164 (297)
T TIGR01105 104 QAQPLGLGHSILCARPVVGDNPFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQVLA 164 (297)
T ss_pred CCCcCchHHHHHHHHHHhCCCCEEEEECCeeccccccccchhHHHHHHHHHHHhCCcEEEE
Confidence 88889999999999988754434455588776542 6778887766555555443
No 139
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=94.60 E-value=0.18 Score=36.91 Aligned_cols=95 Identities=13% Similarity=0.154 Sum_probs=63.0
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC--CCCcchHHHHHHHHhhcCCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR--PKKLGLGTAYIHGLKHASGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~--~~~~g~~~a~n~g~~~a~~d~i 96 (242)
+....+..+++.+... ..+|+|+.+... .... .. ...+.++.. +...|...+...|++....+++
T Consensus 25 ~g~pll~~~l~~l~~~----~~~ivv~~~~~~---~~~~----~~--~~~~~~i~~~~~~~~g~~~si~~al~~~~~~~v 91 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ----VSDLAISANRNP---ERYA----QA--GFGLPVVPDALADFPGPLAGILAGLRWAGTDWV 91 (186)
T ss_pred CCEEHHHHHHHHHHhh----CCEEEEEcCCCH---HHHh----hc--cCCCcEEecCCCCCCCCHHHHHHHHHhcCCCeE
Confidence 4457778888888643 225677654321 1111 11 112344443 3347889999999998888999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+++++|.. ++++.++.+++.+.+.+.++++
T Consensus 92 lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 122 (186)
T TIGR02665 92 LTVPCDTPFLPEDLVARLAAALEASDADIAV 122 (186)
T ss_pred EEEecCCCcCCHHHHHHHHHHhhccCCcEEE
Confidence 99999975 8999999999988654555555
No 140
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=94.56 E-value=0.56 Score=35.59 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=81.4
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC----CCCcchHHHHHHHHhhc---
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR----PKKLGLGTAYIHGLKHA--- 91 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~----~~~~g~~~a~n~g~~~a--- 91 (242)
+....+..+++.+.+.. ..-+|+|..| + .+ +.+.+..++ ..+.+.+. ....|...+...|++..
T Consensus 22 ~GkpLi~~ti~~a~~s~--~~d~IvVstd---~--~~-i~~~a~~~g-~~v~~~r~~~l~~d~~~~~~si~~~l~~l~~~ 92 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSG--LFDKVVVSTD---D--EE-IAEVAKSYG-ASVPFLRPKELADDFTGTAPVVKHAIEELKLQ 92 (222)
T ss_pred CCcCHHHHHHHHHHhCC--CCCEEEEeCC---C--HH-HHHHHHHcC-CEeEEeChHHHcCCCCCchHHHHHHHHHHhhc
Confidence 34566778888876542 1224444332 1 12 223333332 23333322 22346677777777654
Q ss_pred -CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHH--HHHhH-HHHHHHHHhCCCccccc
Q 026146 92 -SGSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRK--LTSRG-ANVLAQTLLWPGVSDLT 166 (242)
Q Consensus 92 -~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~ 166 (242)
..|+++++++|.. ..++.++++++.+.+.+++.+++...........+.+... ..... .....+....++.....
T Consensus 93 ~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~rQd~~~~y~~n 172 (222)
T TIGR03584 93 KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFAFPIQRAFKLKENGGVEMFFPEHFNTRSQDLEEAYHDA 172 (222)
T ss_pred CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccCCChHHheEECCCCcEEecCCCcccCCCCCCchheeeC
Confidence 3699999999988 7899999999999876688777643321110000000000 00000 00000111123445578
Q ss_pred cchhhcchHHHHHh
Q 026146 167 GSFRLYKKSVLEDV 180 (242)
Q Consensus 167 g~~~~~rr~~~~~~ 180 (242)
|+..+++++.+.+-
T Consensus 173 ga~y~~~~~~~~~~ 186 (222)
T TIGR03584 173 GQFYWGKSQAWLES 186 (222)
T ss_pred CeEEEEEHHHHHhc
Confidence 88889999988765
No 141
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=94.50 E-value=0.93 Score=35.06 Aligned_cols=48 Identities=8% Similarity=-0.024 Sum_probs=36.7
Q ss_pred CcchHHHHHHHHhhcCC-CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEE
Q 026146 77 KLGLGTAYIHGLKHASG-SFVVIMDADLSHHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 77 ~~g~~~a~n~g~~~a~~-d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 125 (242)
..|.++|+-.+.+...+ ++++++++|.+.+.+. ..+++...+.+.++.
T Consensus 101 ~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~~~t 149 (253)
T cd02524 101 NTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGKLAT 149 (253)
T ss_pred ccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCCCEE
Confidence 34568888888888765 8999999998887766 888877666666554
No 142
>PLN03153 hypothetical protein; Provisional
Probab=94.42 E-value=0.27 Score=41.57 Aligned_cols=110 Identities=10% Similarity=0.031 Sum_probs=64.3
Q ss_pred cchHHHHHH------HHhh--cCCCEEEEEeCCCCCCCCChHHHHHHHHh--cCCcEEEEEEEeecCCccCchhhHHHHH
Q 026146 78 LGLGTAYIH------GLKH--ASGSFVVIMDADLSHHPKYLPSFIKKQLE--TGASIVTGTRYVRSGGVHGWNLMRKLTS 147 (242)
Q Consensus 78 ~g~~~a~n~------g~~~--a~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
.|.+.++.. .++. -..+|++|+|+|+.+.. .+|++.+.. +.....+|......... ..
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~---~NLv~~Ls~YDptkp~YIGs~Se~~~qn---~~------ 255 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNA---DNLVAVLSKYDPSEMVYVGGPSESHSAN---SY------ 255 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccH---HHHHHHHhhcCCCCCEEecccccccccc---cc------
Confidence 466666655 3333 35799999999999864 555555542 45556666554322110 00
Q ss_pred hHHHHHHHHHhCCCccccccchhhcchHHHHHhhhc-cc-----CCCcccchHHHHHHHHcCCceEEee
Q 026146 148 RGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISS-CV-----SKGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~-~~-----~~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
.+ ......|+.+++++.+++++... +. ...++.|..+..-+.+.|.+....|
T Consensus 256 ----------f~-~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~ 313 (537)
T PLN03153 256 ----------FS-HNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREP 313 (537)
T ss_pred ----------cc-cccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecC
Confidence 00 01234567778999777776322 11 1246778877777778887776555
No 143
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=94.40 E-value=1.5 Score=35.88 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=105.6
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH--hCCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL--YGEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~--~~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
+|.-| .+.+...|+.|.++ .--+++++-. ...+.++++... ..+.++.+.......|-++++-.+.+...
T Consensus 27 lpI~g-kPii~~~l~~L~~~---Gv~eivi~~~----y~~~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~ 98 (358)
T COG1208 27 LPIAG-KPLIEYVLEALAAA---GVEEIVLVVG----YLGEQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLG 98 (358)
T ss_pred ceeCC-ccHHHHHHHHHHHC---CCcEEEEEec----cchHHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcC
Confidence 44445 46788899999765 3447777733 223334443332 12357888888888999999999999998
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhC-----CCcccccc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLW-----PGVSDLTG 167 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g 167 (242)
++-++++.+|...+.+ +..+++..+++...+.............+.-.... . . .....+... ..-....+
T Consensus 99 ~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~~~~~~Gvv~~~~-~--~-~~v~~f~ekp~~~~~~~~~in~ 173 (358)
T COG1208 99 GDDFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVLDPSEFGVVETDD-G--D-GRVVEFREKPGPEEPPSNLINA 173 (358)
T ss_pred CCcEEEEECCeeeccC-HHHHHHHHHhccCccEEEEEecCCCCcCceEEecC-C--C-ceEEEEEecCCCCCCCCceEEe
Confidence 8999999999999988 99999988765333332211111111000000000 0 0 011111111 12235677
Q ss_pred chhhcchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEee
Q 026146 168 SFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 168 ~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
+..++++++++-+ .......+. .++.-.+.+.|..+.-.+
T Consensus 174 Giyi~~~~v~~~i-~~~~~~~~~--~~~~~~l~~~~~~v~~~~ 213 (358)
T COG1208 174 GIYIFDPEVFDYI-EKGERFDFE--EELLPALAAKGEDVYGYV 213 (358)
T ss_pred EEEEECHHHhhhc-ccCCcccch--hhHHHHHHhCCCcEEEEE
Confidence 8889999999933 112233332 267777888886444443
No 144
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=94.39 E-value=0.25 Score=41.68 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-C
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS-G 93 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-~ 93 (242)
+|.-+ ...+..+++.+.+.- ..+++++-+... +.+++....+ .+.++......|.+.+...++.... .
T Consensus 23 ~~i~g-kpli~~~l~~l~~~g---~~~iiiv~~~~~----~~i~~~~~~~---~i~~~~~~~~~G~~~ai~~a~~~l~~~ 91 (451)
T TIGR01173 23 HPLAG-KPMLEHVIDAARALG---PQKIHVVYGHGA----EQVRKALANR---DVNWVLQAEQLGTGHAVLQALPFLPDD 91 (451)
T ss_pred ceeCC-ccHHHHHHHHHHhCC---CCeEEEEECCCH----HHHHHHhcCC---CcEEEEcCCCCchHHHHHHHHHhcCCC
Confidence 34434 477888888886542 235566544221 2233333322 3555555556788888888888874 4
Q ss_pred CEEEEEeCCC-CCCCCChHHHHHHHHhcC
Q 026146 94 SFVVIMDADL-SHHPKYLPSFIKKQLETG 121 (242)
Q Consensus 94 d~i~~lD~D~-~~~~~~l~~l~~~~~~~~ 121 (242)
+.++++++|. .++++.++++++.+.+.+
T Consensus 92 ~~~lv~~~D~p~i~~~~~~~l~~~~~~~~ 120 (451)
T TIGR01173 92 GDVLVLYGDVPLISAETLERLLEAHRQNG 120 (451)
T ss_pred CcEEEEECCcCCcCHHHHHHHHHHHhhCC
Confidence 7899999998 478888999998876543
No 145
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=94.39 E-value=0.78 Score=35.57 Aligned_cols=108 Identities=15% Similarity=0.167 Sum_probs=64.8
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH-------------------HHHHhCCCcEEEeeC
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ-------------------LQQLYGEDRILLRPR 74 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~-------------------~~~~~~~~~~~~~~~ 74 (242)
.+|.-++ ..|...++++.+. .--+++|+-....+...+.+.+ ...-.+...+.+...
T Consensus 25 llpi~g~-pli~~~l~~l~~~---gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEA---GIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVRQ 100 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhC---CCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEec
Confidence 4555554 7778888888654 2236677655432222222210 000011123555555
Q ss_pred CCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCC--ChHHHHHHHHhcCCcEE
Q 026146 75 PKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPK--YLPSFIKKQLETGASIV 125 (242)
Q Consensus 75 ~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~--~l~~l~~~~~~~~~~~v 125 (242)
+...|.+.|...+......+-++++.+|..+... .+..+++.+.+.+.+++
T Consensus 101 ~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ii 153 (260)
T TIGR01099 101 KEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSII 153 (260)
T ss_pred CCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCCEE
Confidence 5567899999888887655667777888776544 78899988876677753
No 146
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.32 E-value=0.28 Score=41.45 Aligned_cols=96 Identities=14% Similarity=0.145 Sum_probs=60.9
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--CCEEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS--GSFVVI 98 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~ 98 (242)
...+..+|+++.+. ...+++|+-.... +.++++..... .+.++..+...|.+.+...+++... .+.+++
T Consensus 29 kpli~~~l~~l~~~---g~~~iivvv~~~~----~~i~~~~~~~~--~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV 99 (450)
T PRK14360 29 KSLVERVLDSCEEL---KPDRRLVIVGHQA----EEVEQSLAHLP--GLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLV 99 (450)
T ss_pred hhHHHHHHHHHHhC---CCCeEEEEECCCH----HHHHHHhcccC--CeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEE
Confidence 36677788887654 2235555544322 12333332222 4666665556677888877877653 466888
Q ss_pred EeCCCC-CCCCChHHHHHHHHhcCCcEE
Q 026146 99 MDADLS-HHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 99 lD~D~~-~~~~~l~~l~~~~~~~~~~~v 125 (242)
+++|.. +.+..++++++.+.+.+.++.
T Consensus 100 ~~~D~P~i~~~~l~~ll~~~~~~~~~~~ 127 (450)
T PRK14360 100 LNGDVPLLRPETLEALLNTHRSSNADVT 127 (450)
T ss_pred EeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence 999974 788899999988876665553
No 147
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=94.30 E-value=0.048 Score=42.28 Aligned_cols=126 Identities=11% Similarity=0.074 Sum_probs=71.1
Q ss_pred cCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHH-------HHHHHHhC-CCc
Q 026146 91 ASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGAN-------VLAQTLLW-PGV 162 (242)
Q Consensus 91 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~ 162 (242)
+..|||++.|+|..++...+.++++..++.+..+..+........ ..+....+....... ........ +..
T Consensus 115 ~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~~-~~~~iT~R~~~~~vhr~~~~~~~~~~~~~~ppct 193 (294)
T PF05212_consen 115 APYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSSE-IHHPITKRRPDSEVHRKTRGGPRCCDDSTGPPCT 193 (294)
T ss_pred ccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCce-eeeeEEeecCCceeEeccCCCCCcCCCCCCCCcc
Confidence 468999999999999999999999999877777665533311110 000100000000000 00000001 111
Q ss_pred cccccchhhcchHHHHHhhhcc---cCCCcccchHHHHHHHHcCCceEEeeeeeeecc
Q 026146 163 SDLTGSFRLYKKSVLEDVISSC---VSKGYVFQMEMIVRACRKGYHIEEVPITFVDRV 217 (242)
Q Consensus 163 ~~~~g~~~~~rr~~~~~~~~~~---~~~~~~~d~~~~~~~~~~g~~i~~~p~~~~~~~ 217 (242)
..+=...-+|+|++++-+-... -.++++-|+.+..-+.....+|..+....+.|.
T Consensus 194 ~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH~ 251 (294)
T PF05212_consen 194 GFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVHT 251 (294)
T ss_pred eEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEEEEc
Confidence 1111122369999998874332 247788888887777667788888876554443
No 148
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=94.04 E-value=1.5 Score=33.19 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc-CCCEEEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA-SGSFVVIM 99 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a-~~d~i~~l 99 (242)
...+..+++.+.+.. ..-+|+|+-+... .....+.+.... ..+.++... .+...+.-.|++.. ..++++++
T Consensus 31 ~pli~~~l~~l~~~~--~~~~ivvv~~~~~--~~~~~~~~~~~~--~~~~~~~~~--~~~~~sv~~~l~~~~~~d~vlv~ 102 (227)
T PRK00155 31 KPILEHTLEAFLAHP--RIDEIIVVVPPDD--RPDFAELLLAKD--PKVTVVAGG--AERQDSVLNGLQALPDDDWVLVH 102 (227)
T ss_pred EEHHHHHHHHHHcCC--CCCEEEEEeChHH--HHHHHHHhhccC--CceEEeCCc--chHHHHHHHHHHhCCCCCEEEEc
Confidence 355566777775431 1226777755322 122222221111 134444332 25678888888876 57899999
Q ss_pred eCCCC-CCCCChHHHHHHHHhcC
Q 026146 100 DADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 100 D~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
++|.. ++++.++++++.+.+.+
T Consensus 103 ~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 103 DAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred cCccCCCCHHHHHHHHHHHhhCC
Confidence 99977 88999999999886654
No 149
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=94.04 E-value=1.4 Score=33.67 Aligned_cols=101 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHh--CCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLY--GEDRILLRPRPKKLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~ 97 (242)
....+..+++++... .--++++|.+... .+.+.++.... .+..+.+...+...|.+.|+..+......+-++
T Consensus 30 ~~pli~~~l~~l~~~---gi~~i~vv~~~~~---~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~l 103 (240)
T cd02538 30 DKPMIYYPLSTLMLA---GIREILIISTPED---LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVC 103 (240)
T ss_pred CEEhHHHHHHHHHHC---CCCEEEEEeCcch---HHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCCEE
Confidence 457788888888754 2226777654321 12223322211 123455555555678899998888887666667
Q ss_pred EEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 98 IMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 98 ~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
++.+|..+.+..+..+++...+.+.++..
T Consensus 104 v~~gD~~~~~~~~~~~~~~~~~~~~~~~~ 132 (240)
T cd02538 104 LILGDNIFYGQGLSPILQRAAAQKEGATV 132 (240)
T ss_pred EEECCEEEccHHHHHHHHHHHhcCCCcEE
Confidence 77888776555678888776654555433
No 150
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=94.00 E-value=0.29 Score=40.23 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=60.9
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC--CCCcchHHHHHHHHhhcCCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR--PKKLGLGTAYIHGLKHASGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~--~~~~g~~~a~n~g~~~a~~d~i 96 (242)
+....+...++.+... .-+|+|+-++.. +.+... .+ .+.++.. ....|...+...|++....+++
T Consensus 30 ~Gkpll~~~i~~l~~~----~~~iivvv~~~~----~~~~~~---~~--~~~~i~d~~~g~~G~~~si~~gl~~~~~~~v 96 (366)
T PRK14489 30 GGKPLIERVVDRLRPQ----FARIHLNINRDP----ARYQDL---FP--GLPVYPDILPGFQGPLSGILAGLEHADSEYL 96 (366)
T ss_pred CCeeHHHHHHHHHHhh----CCEEEEEcCCCH----HHHHhh---cc--CCcEEecCCCCCCChHHHHHHHHHhcCCCcE
Confidence 3445667777777532 125666444322 112221 11 1222322 2225888899999999888999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+++++|.. ++++.++.+++.+.+.+.++++.
T Consensus 97 lv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 97 FVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred EEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 99999965 89999999999876666666654
No 151
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=94.00 E-value=2.3 Score=33.14 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=98.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH---H---HHHh-------------CCCcEEEeeC
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ---L---QQLY-------------GEDRILLRPR 74 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~---~---~~~~-------------~~~~~~~~~~ 74 (242)
.+|..++ ..|...++++.+. .--+++|+-+-..+...+.+.+ + .... ++..+.++..
T Consensus 25 llpv~gk-pli~~~l~~l~~~---gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAA---GIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQ 100 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHC---CCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEc
Confidence 4555555 7888889988764 2225666655433222222211 0 0000 1234566666
Q ss_pred CCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCC--ChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHH-HhHHH
Q 026146 75 PKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPK--YLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLT-SRGAN 151 (242)
Q Consensus 75 ~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~--~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (242)
+...|.+.+...+......+-++++.+|..+... .+.++++.+.+.+.+++.......... .......... .....
T Consensus 101 ~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~v~~d~~~~~~~ 179 (267)
T cd02541 101 KEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGASVIAVEEVPPEDV-SKYGIVKGEKIDGDVF 179 (267)
T ss_pred CCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCCCEEEEEEcChhcC-ccceEEEeecCCCCce
Confidence 6668999999999988876677888888876554 588998877655555433222211100 0011000000 00000
Q ss_pred HHHHHHhCC-----CccccccchhhcchHHHHHhhhcccC-CCcccchHHHHHHHHcCCceEEeeee
Q 026146 152 VLAQTLLWP-----GVSDLTGSFRLYKKSVLEDVISSCVS-KGYVFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 152 ~~~~~~~~~-----~~~~~~g~~~~~rr~~~~~~~~~~~~-~~~~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
.+......+ .-.....+.+++++++++.+...... ....+-.+....+...| ++...+..
T Consensus 180 ~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~e~~~~d~i~~l~~~~-~v~~~~~~ 245 (267)
T cd02541 180 KVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKGGEIQLTDAIAKLLEEE-PVYAYVFE 245 (267)
T ss_pred EEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCCCcEEHHHHHHHHHhcC-CEEEEEee
Confidence 011111111 11223456779999999887321111 11111235556666666 77766654
No 152
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=93.96 E-value=1.1 Score=33.90 Aligned_cols=102 Identities=15% Similarity=0.150 Sum_probs=58.3
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH-HHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ-LQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS- 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~-~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~- 92 (242)
+|..++ ..+..+++.+.+. ..-++++|-.. .......+.+ +....+...+.+ ......|.+.+...|.....
T Consensus 24 l~i~g~-pli~~~l~~l~~~---g~~~ivvv~~~-~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~g~~~~l~~a~~~l~~ 97 (231)
T cd04183 24 IEVDGK-PMIEWVIESLAKI---FDSRFIFICRD-EHNTKFHLDESLKLLAPNATVVE-LDGETLGAACTVLLAADLIDN 97 (231)
T ss_pred eEECCE-EHHHHHHHhhhcc---CCceEEEEECh-HHhhhhhHHHHHHHhCCCCEEEE-eCCCCCcHHHHHHHHHhhcCC
Confidence 454454 7788888888765 22256666542 2212222222 212222223332 33456788999999888774
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCc
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGAS 123 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 123 (242)
.+.++++.+|...+.+... ++..+.+.+.+
T Consensus 98 ~~~~lv~~~D~i~~~~~~~-~~~~~~~~~~~ 127 (231)
T cd04183 98 DDPLLIFNCDQIVESDLLA-FLAAFRERDLD 127 (231)
T ss_pred CCCEEEEecceeeccCHHH-HHHHhhccCCc
Confidence 4788899999988877554 44444333433
No 153
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=93.90 E-value=0.28 Score=36.63 Aligned_cols=148 Identities=17% Similarity=0.244 Sum_probs=87.5
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
.++++++|...+.+.+...+--+.+-... ..-.|+|++. -+ .. ++..+.-.|.
T Consensus 74 HklavlVPfRdRfEELl~FvPHM~~FL~rq~v~HHI~vlNQ-vD-----------------~f-------RFNRAsLINV 128 (310)
T KOG3917|consen 74 HKLAVLVPFRDRFEELLEFVPHMSKFLHRQNVSHHILVLNQ-VD-----------------PF-------RFNRASLINV 128 (310)
T ss_pred eeEEEEechHHHHHHHHHhhHHHHHHHhhcCcceEEEEeec-cC-----------------cc-------eechhhheec
Confidence 57999999998877666555444333322 2334555533 11 11 2345667788
Q ss_pred HHhhcC--CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCcc
Q 026146 87 GLKHAS--GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVS 163 (242)
Q Consensus 87 g~~~a~--~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (242)
|+..|. .||+++=|.|.. +.++..-. .-...|++-...++..+ .+. ..
T Consensus 129 Gf~eas~~~DYiaMhDVDLLPlN~el~Y~---------fP~~~gp~HiasP~lHP----------kYH----------Y~ 179 (310)
T KOG3917|consen 129 GFNEASRLCDYIAMHDVDLLPLNPELPYD---------FPGIGGPRHIASPQLHP----------KYH----------YE 179 (310)
T ss_pred chhhhcchhceeeecccccccCCCCCCCC---------CCccCCcccccCcccCc----------hhh----------hh
Confidence 888876 799999999976 34433211 11122222221111000 011 11
Q ss_pred ccccchhhcchHHHHHhhhc-ccCCCc-ccchHHHHHHHHcCCceEEee
Q 026146 164 DLTGSFRLYKKSVLEDVISS-CVSKGY-VFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 164 ~~~g~~~~~rr~~~~~~~~~-~~~~~~-~~d~~~~~~~~~~g~~i~~~p 210 (242)
.+.||.++++++-+++.-|. ....+| .||-||..|...+|..+....
T Consensus 180 ~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqltRps 228 (310)
T KOG3917|consen 180 KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLTRPS 228 (310)
T ss_pred hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEeccc
Confidence 24578889999999999554 445555 468899999999998776543
No 154
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=93.88 E-value=2 Score=33.25 Aligned_cols=50 Identities=8% Similarity=-0.030 Sum_probs=36.6
Q ss_pred CCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 76 KKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 76 ~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+..|-++|+..+.+....+.++++++|.+.+ ..+..+++...+.+.++.+
T Consensus 101 ~~~gt~~al~~~~~~i~~e~flv~~gD~i~~-~dl~~~~~~h~~~~~d~tl 150 (254)
T TIGR02623 101 ESTQTGGRLKRVREYLDDEAFCFTYGDGVAD-IDIKALIAFHRKHGKKATV 150 (254)
T ss_pred CcCCcHHHHHHHHHhcCCCeEEEEeCCeEec-CCHHHHHHHHHHcCCCEEE
Confidence 4467788888888877667788999998764 4577777777666666543
No 155
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.85 E-value=0.45 Score=40.20 Aligned_cols=97 Identities=14% Similarity=0.087 Sum_probs=58.6
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--CCEEEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS--GSFVVIM 99 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~l 99 (242)
..+..+++.+... .--+++|+-.... +.+.++..... ..+.++......|.+.+...+++... .+.++++
T Consensus 34 pli~~~l~~l~~~---gi~~ivvv~~~~~----~~i~~~~~~~~-~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~ 105 (446)
T PRK14353 34 PMLAHVLAAAASL---GPSRVAVVVGPGA----EAVAAAAAKIA-PDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVL 105 (446)
T ss_pred hHHHHHHHHHHhC---CCCcEEEEECCCH----HHHHHHhhccC-CCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEE
Confidence 5667777777654 2235666654322 22333332221 23444444556688888888887653 5778899
Q ss_pred eCCC-CCCCCChHHHHHHHHhcCCcEEEE
Q 026146 100 DADL-SHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 100 D~D~-~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
++|. .++++.++.+++..++ +.++++.
T Consensus 106 ~~D~P~i~~~~l~~l~~~~~~-~~~~~i~ 133 (446)
T PRK14353 106 YGDTPLITAETLARLRERLAD-GADVVVL 133 (446)
T ss_pred eCCcccCCHHHHHHHHHhHhc-CCcEEEE
Confidence 9998 5888899999886543 4555443
No 156
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.81 E-value=0.56 Score=40.11 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=61.3
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--CCEEEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS--GSFVVIM 99 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~l 99 (242)
..|..+++.+.+. .--+++++-+... +.++++... ..+.++..+...|.+.+.-.|++... .+-++++
T Consensus 36 pli~~~l~~l~~~---gi~~ivvv~~~~~----~~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~~lV~ 105 (481)
T PRK14358 36 PMVAWAVKAARDL---GARKIVVVTGHGA----EQVEAALQG---SGVAFARQEQQLGTGDAFLSGASALTEGDADILVL 105 (481)
T ss_pred eHHHHHHHHHHhC---CCCeEEEEeCCCH----HHHHHHhcc---CCcEEecCCCcCCcHHHHHHHHHHhhCCCCcEEEE
Confidence 5667777777654 2236676654322 223333322 24677776667788888888887753 2337789
Q ss_pred eCCC-CCCCCChHHHHHHHHhcCCcEEE
Q 026146 100 DADL-SHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 100 D~D~-~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
++|. .+++..++.+++...+.+.++.+
T Consensus 106 ~gD~P~i~~~~l~~ll~~~~~~~~~~ti 133 (481)
T PRK14358 106 YGDTPLLRPDTLRALVADHRAQGSAMTI 133 (481)
T ss_pred eCCeeccCHHHHHHHHHHHHhcCCeEEE
Confidence 9998 47888899999888766665533
No 157
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=93.68 E-value=0.96 Score=33.99 Aligned_cols=177 Identities=11% Similarity=0.042 Sum_probs=91.0
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHh--CCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLY--GEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
+|..++ ..+..+++.+.+.- --+++|+-+.. .+.++++.... .+..+.++..+...|.+.++..+.+ ..
T Consensus 24 l~~~g~-pli~~~l~~l~~~~---~~~iivv~~~~----~~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~-~~ 94 (220)
T cd06426 24 LKVGGK-PILETIIDRFIAQG---FRNFYISVNYL----AEMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPE-KP 94 (220)
T ss_pred CeECCc-chHHHHHHHHHHCC---CcEEEEECccC----HHHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHh-hC
Confidence 444554 68888888887652 12666665432 22233332211 1234566555555677777654443 33
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCC-Cccccccchhh
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWP-GVSDLTGSFRL 171 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~ 171 (242)
.+.++++.+|.+. ...+..+++.+.+.+.++++......... ........ . ..+......+ ......++.++
T Consensus 95 ~~~~lv~~~D~i~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~d-~---~~v~~~~ek~~~~~~~~~Giy~ 167 (220)
T cd06426 95 TDPFLVMNGDILT-NLNYEHLLDFHKENNADATVCVREYEVQV--PYGVVETE-G---GRITSIEEKPTHSFLVNAGIYV 167 (220)
T ss_pred CCCEEEEcCCEee-ccCHHHHHHHHHhcCCCEEEEEEEcCCCC--cceEEEEC-C---CEEEEEEECCCCCCeEEEEEEE
Confidence 6778889999755 45678888887766666655432211111 11100000 0 0000000111 11223457778
Q ss_pred cchHHHHHhhhcccCCCcccchHHHHHHHHcCCceEEeee
Q 026146 172 YKKSVLEDVISSCVSKGYVFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 172 ~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
+++++++.+- ...+.+-.++...+.+.|.++...+.
T Consensus 168 ~~~~~~~~i~----~~~~~~l~~~~~~~i~~~~~i~~~~~ 203 (220)
T cd06426 168 LEPEVLDLIP----KNEFFDMPDLIEKLIKEGKKVGVFPI 203 (220)
T ss_pred EcHHHHhhcC----CCCCcCHHHHHHHHHHCCCcEEEEEe
Confidence 9999988762 11111123566777788877665553
No 158
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=93.66 E-value=1.3 Score=33.87 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=56.2
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCC--CEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASG--SFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~--d~i 96 (242)
+....+...++.+.+.. .--+|+|+-+. +.+.++...++ ..+.+.......|.+. .-.+++.... +.+
T Consensus 24 ~gkpll~~~l~~l~~~~--~i~~ivvv~~~------~~i~~~~~~~~-~~~~~~~~~~~~gt~~-~~~~~~~~~~~~d~v 93 (239)
T cd02517 24 AGKPMIQHVYERAKKAK--GLDEVVVATDD------ERIADAVESFG-GKVVMTSPDHPSGTDR-IAEVAEKLDADDDIV 93 (239)
T ss_pred CCcCHHHHHHHHHHhCC--CCCEEEEECCc------HHHHHHHHHcC-CEEEEcCcccCchhHH-HHHHHHhcCCCCCEE
Confidence 34577788888887541 12256666431 22333333332 2333222222334443 4445555544 899
Q ss_pred EEEeCCC-CCCCCChHHHHHHHHhc-CCcEEE
Q 026146 97 VIMDADL-SHHPKYLPSFIKKQLET-GASIVT 126 (242)
Q Consensus 97 ~~lD~D~-~~~~~~l~~l~~~~~~~-~~~~v~ 126 (242)
+++++|. .+++..+..+++.+.+. +.++++
T Consensus 94 lv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~ 125 (239)
T cd02517 94 VNVQGDEPLIPPEMIDQVVAALKDDPGVDMAT 125 (239)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhCCCCCEEE
Confidence 9999998 58899999999887654 555543
No 159
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=93.63 E-value=1.9 Score=33.86 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=58.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS- 92 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~- 92 (242)
.+|..++...+..+++.+.... ..-+++||-+.. -.+.+++.... ....+.++..+...|.+.|.-.++....
T Consensus 26 ll~l~g~~~li~~~l~~l~~~~--~~~~i~vvt~~~---~~~~v~~~l~~-~~~~~~ii~ep~~~gTa~ai~~a~~~~~~ 99 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGLV--PPDRILVVTNEE---YRFLVREQLPE-GLPEENIILEPEGRNTAPAIALAALYLAK 99 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcCC--CCCcEEEEechH---HHHHHHHHHhh-cCCCceEEECCCCCCcHHHHHHHHHHHHh
Confidence 4556666788889999887542 122677776531 22334433332 1235666666666788888877776653
Q ss_pred ---CCEEEEEeCCCCCCC-CChHHHH
Q 026146 93 ---GSFVVIMDADLSHHP-KYLPSFI 114 (242)
Q Consensus 93 ---~d~i~~lD~D~~~~~-~~l~~l~ 114 (242)
.++++++.+|..+.. ..+.+.+
T Consensus 100 ~~~~~~vlVl~~D~~i~~~~~f~~~l 125 (274)
T cd02509 100 RDPDAVLLVLPSDHLIEDVEAFLKAV 125 (274)
T ss_pred cCCCCeEEEecchhcccCHHHHHHHH
Confidence 579999999988652 3333344
No 160
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=93.60 E-value=1.1 Score=33.66 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=39.8
Q ss_pred chHHHHHHHHhhcC-----CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEE
Q 026146 79 GLGTAYIHGLKHAS-----GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTR 129 (242)
Q Consensus 79 g~~~a~n~g~~~a~-----~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~ 129 (242)
|...+...|++... .++++++++|.. ++++.++++++.+.+.+.+.+++..
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 56677777777543 389999999987 7899999999998776677766543
No 161
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=93.51 E-value=1.9 Score=35.21 Aligned_cols=195 Identities=9% Similarity=0.055 Sum_probs=103.7
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhc---CCCeEEEEEeCCCCCCh--HHHHHHHHHHhCCCcEEEeeCCCCcc----
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLR---DVDFEIIVVDDGSPDGT--QEVVKQLQQLYGEDRILLRPRPKKLG---- 79 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~---~~~~eiivvd~~s~d~t--~~~l~~~~~~~~~~~~~~~~~~~~~g---- 79 (242)
|.+-++|.+.-+.-..+..++.-=.+.. ......+.+-.-..+.. ...+.+=+..+. .+.+.....++.
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg--DIi~~df~Dty~nltl 172 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG--DIIQVDFEDTYFNLTL 172 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC--CEEEEecccchhchHH
Confidence 5677777775433222222221111111 12345555544443322 333444344454 455555444332
Q ss_pred -hHHHHHHHHhhc-CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHH
Q 026146 80 -LGTAYIHGLKHA-SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTL 157 (242)
Q Consensus 80 -~~~a~n~g~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (242)
.-..+..+-.++ ..++|+-.|+|..+.++.|-++++....+..+..+|.........+.. .++++-.....-
T Consensus 173 Ktl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~------~~KwyVp~~~y~ 246 (349)
T KOG2287|consen 173 KTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDK------TSKWYVPESEYP 246 (349)
T ss_pred HHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCC------CCCCccCHHHCC
Confidence 234445555544 489999999999999888888777664456778888655531111000 000000001111
Q ss_pred hCCCccccccchhhcchHHHHHhhhccc--CCCcccchHHHHHHHHc-CCceEEeee
Q 026146 158 LWPGVSDLTGSFRLYKKSVLEDVISSCV--SKGYVFQMEMIVRACRK-GYHIEEVPI 211 (242)
Q Consensus 158 ~~~~~~~~~g~~~~~rr~~~~~~~~~~~--~~~~~~d~~~~~~~~~~-g~~i~~~p~ 211 (242)
...-.....|++.++++++.+.+..... .....||.-+..-+.+. |.+-...+.
T Consensus 247 ~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~ 303 (349)
T KOG2287|consen 247 CSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPG 303 (349)
T ss_pred CCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcc
Confidence 1122445678888999999999855433 22335788888777766 766555553
No 162
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=93.51 E-value=2.4 Score=31.81 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=63.8
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC-----CCcEEEeeCCCCcchHHHHHHHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG-----EDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~-----~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
.+|.-|. ..+..+++.+.+. .--+|+||-+.. ..+.++++.+..+ ...+.+.......|.+.++..+.
T Consensus 25 Llpv~g~-pli~~~l~~l~~~---g~~~iivv~~~~---~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~ 97 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKA---GFEDVIVVVPEE---EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIR 97 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHC---CCCeEEEEECHH---HHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHH
Confidence 4555554 7888899988764 223677776531 1233444333221 12344444566789999999988
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+....+ ++++.+|.+ .+.-+..+++...+.+..+..
T Consensus 98 ~~i~~d-~lv~~~D~i-~~~~l~~~l~~h~~~~~~~t~ 133 (214)
T cd04198 98 KKIKKD-FLVLSCDLI-TDLPLIELVDLHRSHDASLTV 133 (214)
T ss_pred hhcCCC-EEEEeCccc-cccCHHHHHHHHhccCCcEEE
Confidence 877555 778888854 445677888877665555544
No 163
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.46 E-value=0.85 Score=38.67 Aligned_cols=98 Identities=18% Similarity=0.144 Sum_probs=62.5
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS-- 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-- 92 (242)
+|.-+. ..+..+++++.+.- -.+++++-.... +.++++.. ..+.++..+...|.+.+...+++...
T Consensus 25 l~i~Gk-pli~~~l~~l~~~g---i~~iivvv~~~~----~~i~~~~~----~~~~~~~~~~~~g~~~al~~a~~~l~~~ 92 (458)
T PRK14354 25 HKVCGK-PMVEHVVDSVKKAG---IDKIVTVVGHGA----EEVKEVLG----DRSEFALQEEQLGTGHAVMQAEEFLADK 92 (458)
T ss_pred CEeCCc-cHHHHHHHHHHhCC---CCeEEEEeCCCH----HHHHHHhc----CCcEEEEcCCCCCHHHHHHHHHHHhccc
Confidence 344454 77788888886542 225555533221 22333321 12445555556788888888887754
Q ss_pred CCEEEEEeCCC-CCCCCChHHHHHHHHhcCCcE
Q 026146 93 GSFVVIMDADL-SHHPKYLPSFIKKQLETGASI 124 (242)
Q Consensus 93 ~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~~ 124 (242)
.++++++++|. .+++..++++++.+++.+.++
T Consensus 93 ~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~ 125 (458)
T PRK14354 93 EGTTLVICGDTPLITAETLKNLIDFHEEHKAAA 125 (458)
T ss_pred CCeEEEEECCccccCHHHHHHHHHHHHhcCCce
Confidence 47899999998 578889999998886655554
No 164
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=93.41 E-value=0.78 Score=33.67 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=60.8
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc-CCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA-SGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a-~~d~i~ 97 (242)
+....+...++.+.+.. .-+++|+-+..++.+...+++. ...+.. ....|...+...|++.. ..+.++
T Consensus 25 ~GkplI~~vi~~l~~~~---i~~I~Vv~~~~~~~~~~~l~~~-------~~~~~~-~~g~G~~~~l~~al~~~~~~~~~l 93 (183)
T TIGR00454 25 CGRCLIDHVLSPLLKSK---VNNIIIATSPHTPKTEEYINSA-------YKDYKN-ASGKGYIEDLNECIGELYFSEPFL 93 (183)
T ss_pred CCEEHHHHHHHHHHhCC---CCEEEEEeCCCHHHHHHHHhhc-------CcEEEe-cCCCCHHHHHHHHhhcccCCCCEE
Confidence 34577888888886542 2256666554344444444321 122332 45568888999999863 367899
Q ss_pred EEeCCCC-CCCCChHHHHHHHHhcC
Q 026146 98 IMDADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
++-+|.. +.+..+..+++.+...+
T Consensus 94 v~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 94 VVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred EEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 9999987 78999999999886543
No 165
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=93.33 E-value=0.3 Score=36.10 Aligned_cols=59 Identities=27% Similarity=0.355 Sum_probs=43.7
Q ss_pred cEEEeeCCCCcchHHHHHHHHhhcC--CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEE
Q 026146 68 RILLRPRPKKLGLGTAYIHGLKHAS--GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTR 129 (242)
Q Consensus 68 ~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~ 129 (242)
.+.++..+. .|...++..|++... ++.++++-+|.- ++++.++++++.++. .+.++++.
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~--~~~vi~p~ 126 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE--GDVVIAPD 126 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc--CCEEEEec
Confidence 356666554 489999999998754 468999999988 789999999987743 34444443
No 166
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=93.24 E-value=1.1 Score=33.87 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=55.9
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC--CcchHHHHHHHHhhcC
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK--KLGLGTAYIHGLKHAS 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~--~~g~~~a~n~g~~~a~ 92 (242)
+|.-+ ...+...++++.+. .--+|+||-... .+.++++.... ..+.++..+. ..|.+.+...|+...
T Consensus 24 ~~~~g-~~li~~~l~~l~~~---gi~~i~vv~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~~- 92 (229)
T cd02523 24 LEING-KPLLERQIETLKEA---GIDDIVIVTGYK----KEQIEELLKKY--PNIKFVYNPDYAETNNIYSLYLARDFL- 92 (229)
T ss_pred eeECC-EEHHHHHHHHHHHC---CCceEEEEeccC----HHHHHHHHhcc--CCeEEEeCcchhhhCcHHHHHHHHHHc-
Confidence 34333 47788888888765 223667765532 22233333322 2466665443 478888999998887
Q ss_pred CCEEEEEeCCCCCCCCChHHHH
Q 026146 93 GSFVVIMDADLSHHPKYLPSFI 114 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~ 114 (242)
.+.++++.+|..++++.++.++
T Consensus 93 ~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 93 DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred CCCEEEEeCCEecCHHHHHHHH
Confidence 6789999999988775544443
No 167
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.82 E-value=1.1 Score=37.87 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=67.1
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS- 92 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~- 92 (242)
++|.-+. ..+..+++++.+.. -+++|+-+.. .+.+.++... .+.++..+...|.+.+...+++...
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~----~~i~vv~~~~----~~~i~~~~~~----~~~~~~~~~~~g~~~ai~~a~~~l~~ 88 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA----QKVGVVLGHE----AELVKKLLPE----WVKIFLQEEQLGTAHAVMCARDFIEP 88 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC----CcEEEEeCCC----HHHHHHhccc----ccEEEecCCCCChHHHHHHHHHhcCc
Confidence 4555554 78888999887642 2566664421 1333433221 2445555556788888888888764
Q ss_pred CCEEEEEeCCC-CCCCCChHHHHHHHHhcCCcEEEE
Q 026146 93 GSFVVIMDADL-SHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 93 ~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
.++++++++|. .+.+..++++++.+++.+.++.+.
T Consensus 89 ~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~ 124 (448)
T PRK14357 89 GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTIL 124 (448)
T ss_pred CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEE
Confidence 58999999997 467778899998887666666544
No 168
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=92.77 E-value=2 Score=32.63 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=59.0
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCC--CcEEEeeCCCCcchHHHHHHHHhhcC-CCE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGE--DRILLRPRPKKLGLGTAYIHGLKHAS-GSF 95 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~--~~~~~~~~~~~~g~~~a~n~g~~~a~-~d~ 95 (242)
+....+..+++.+.... ..-+++||-+. +....++++...++. .++.++... .+...+.-.|++... .++
T Consensus 28 ~gkpll~~~i~~~~~~~--~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~~g--~~r~~sv~~gl~~~~~~d~ 100 (230)
T PRK13385 28 VGEPIFIHALRPFLADN--RCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVKGG--TERQESVAAGLDRIGNEDV 100 (230)
T ss_pred CCeEHHHHHHHHHHcCC--CCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcCCC--chHHHHHHHHHHhccCCCe
Confidence 34566777888776532 12256666543 222333333333221 134444322 245678888887763 578
Q ss_pred EEEEeCCCC-CCCCChHHHHHHHHhcCCc
Q 026146 96 VVIMDADLS-HHPKYLPSFIKKQLETGAS 123 (242)
Q Consensus 96 i~~lD~D~~-~~~~~l~~l~~~~~~~~~~ 123 (242)
++++|+|.- ++++.++++++.+.+.+..
T Consensus 101 vli~~~d~P~i~~~~i~~li~~~~~~~~~ 129 (230)
T PRK13385 101 ILVHDGARPFLTQDIIDRLLEGVAKYGAA 129 (230)
T ss_pred EEEccCCCCCCCHHHHHHHHHHHhhCCcE
Confidence 999999987 8899999999988764433
No 169
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=92.73 E-value=2.7 Score=31.13 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=57.0
Q ss_pred CccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc--CC-
Q 026146 17 TYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--SG- 93 (242)
Q Consensus 17 ~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--~~- 93 (242)
.-++.++.....+.+.... .++|++=--||.+....+....+............-.++..|-..+.-.+++.. ++
T Consensus 9 L~~~~~Rr~~~~~~~~~~~--~~~e~~~Avdg~~l~~~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~v~~~~ 86 (200)
T PF01755_consen 9 LDRSTERRERIQQQLAKLG--INFEFFDAVDGRDLSEDELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRIVDSGL 86 (200)
T ss_pred CCCCHHHHHHHHHHHHHcC--CceEEEEeecccccchHHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHHHHcCC
Confidence 3344455555555555442 578888777877655433333332111100111111344567666666667664 34
Q ss_pred CEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 94 SFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
++++++.||..+.+++.+.+-....
T Consensus 87 ~~~lIlEDDv~~~~~f~~~l~~~~~ 111 (200)
T PF01755_consen 87 EYALILEDDVIFDPDFKEFLEEILS 111 (200)
T ss_pred CeEEEEeccccccccHHHHHHHHHh
Confidence 9999999999999987666555444
No 170
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=92.69 E-value=3.5 Score=32.58 Aligned_cols=105 Identities=10% Similarity=0.066 Sum_probs=64.3
Q ss_pred cEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC---CC------cch
Q 026146 10 KYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP---KK------LGL 80 (242)
Q Consensus 10 ~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~---~~------~g~ 80 (242)
.++|+....|-...+..++.|+.... ...+.+.|++++.+++..+.+.+..... +..+.++..+ .. ...
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~-~~~~~fhii~d~~s~~~~~~l~~~~~~~-~~~i~f~~i~~~~~~~~~~~~~~~ 79 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYR-RNPLHFHLITDEIARRILATLFQTWMVP-AVEVSFYNAEELKSRVSWIPNKHY 79 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcC-CCCEEEEEEECCcCHHHHHHHHHhcccc-CcEEEEEEhHHhhhhhccCcccch
Confidence 47788888665677888999998874 3568999999987666655555443332 2456555532 11 111
Q ss_pred HHH----HHHHHhhc--CCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 81 GTA----YIHGLKHA--SGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 81 ~~a----~n~g~~~a--~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
+.. |-..-+.- ..+-++.||+|.++. +-+.+|.+.+
T Consensus 80 s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~-~di~eL~~~~ 121 (280)
T cd06431 80 SGIYGLMKLVLTEALPSDLEKVIVLDTDITFA-TDIAELWKIF 121 (280)
T ss_pred hhHHHHHHHHHHHhchhhcCEEEEEcCCEEEc-CCHHHHHHHh
Confidence 111 22222222 368999999997765 4466666654
No 171
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.54 E-value=0.26 Score=41.54 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=72.9
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCC-CCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGS-PDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYI 85 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n 85 (242)
.+..++.++-||++-+.|.+.+..+.+-. .--+|+||=|.- .....+.++... ...+++...++| .-.+|-
T Consensus 441 ~~qgFTlim~TYdR~d~L~k~v~~ys~vP--sL~kIlVVWNnq~k~PP~es~~~~~----~VPlr~r~qkeN--sLnNRF 512 (691)
T KOG1022|consen 441 HSQGFTLIMLTYDRVDLLKKLVKHYSRVP--SLKKILVVWNNQGKNPPPESLEPDI----AVPLRFRQQKEN--SLNNRF 512 (691)
T ss_pred cccceeeeeehHHHHHHHHHHHHHHhhCC--CcceEEEEecCCCCCCChhhccccC----CccEEEEehhhh--hhhccc
Confidence 34679999999999888888888775442 223566665532 222223333221 135777666665 223333
Q ss_pred HHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 86 HGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
.-+...+++.|+-+|+|++++-+-|+--.+.-++.+..+|.
T Consensus 513 ~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVG 553 (691)
T KOG1022|consen 513 EPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVG 553 (691)
T ss_pred ccCcccccceeEEecCceeeecchhHHHHHHHHhCccceec
Confidence 44455679999999999998888888888877776655554
No 172
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=92.50 E-value=0.079 Score=46.55 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=44.3
Q ss_pred CcEEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCC-CCCCChHHHHHHHHhcC
Q 026146 67 DRILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 67 ~~~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
+.+.|+.++++.| |++|+|..++-+ .++||+-+|.|-. -++..+.+.+-.+.+..
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~ 230 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPK 230 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCC
Confidence 4788888777766 788999887654 5899999999986 56889999998887643
No 173
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=92.50 E-value=1.9 Score=35.22 Aligned_cols=183 Identities=14% Similarity=0.089 Sum_probs=94.4
Q ss_pred eCccccccHHHHHHHHHhhhcCCCeEEEEEeCC-CCCChHHHHHHHHHHh--CCCcEEEeeCCCCcchHHHHHHHHhhcC
Q 026146 16 PTYNERLNIALIVYLIFKHLRDVDFEIIVVDDG-SPDGTQEVVKQLQQLY--GEDRILLRPRPKKLGLGTAYIHGLKHAS 92 (242)
Q Consensus 16 p~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~-s~d~t~~~l~~~~~~~--~~~~~~~~~~~~~~g~~~a~n~g~~~a~ 92 (242)
|.-+. ..+..+++++.+. .--+++++-.. .. +.++++.... -+..+.++..+...|.+.+.-.++....
T Consensus 26 pv~g~-pli~~~l~~l~~~---gi~~i~vv~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~ 97 (353)
T TIGR01208 26 PVANK-PILQYAIEDLAEA---GITDIGIVVGPVTG----EEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLG 97 (353)
T ss_pred EECCE-eHHHHHHHHHHHC---CCCEEEEEeCCCCH----HHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 44454 7788888888764 22356666543 22 2233332211 1224566665666788999999988775
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhC---CCccccccch
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLW---PGVSDLTGSF 169 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~ 169 (242)
.+-++++.+|..++ ..+..+++.+.+.+.++.+......+... +..... . ....+...... ..-.....|.
T Consensus 98 ~~~~li~~gD~~~~-~~l~~l~~~~~~~~~d~ti~~~~~~~~~~--~g~~~~--~-~~~~v~~~~ekp~~~~~~~~~~Gi 171 (353)
T TIGR01208 98 DDDFVVYLGDNLIQ-DGISRFVKSFEEKDYDALILLTKVRDPTA--FGVAVL--E-DGKRILKLVEKPKEPPSNLAVVGL 171 (353)
T ss_pred CCCEEEEECCeecC-ccHHHHHHHHHhcCCCcEEEEEECCChhh--CeEEEE--c-CCCcEEEEEECCCCCCccceEEEE
Confidence 54566778998775 56788888777666665443322111110 000000 0 00000000000 0011234566
Q ss_pred hhcchHHHHHhhhccc-CCCcccchHHHHHHHHcCCceEEeeee
Q 026146 170 RLYKKSVLEDVISSCV-SKGYVFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 170 ~~~rr~~~~~~~~~~~-~~~~~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
+++++.+++.+-.... .....+-.++...+...|.++...+..
T Consensus 172 y~~~~~l~~~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~~~ 215 (353)
T TIGR01208 172 YMFRPLIFEAIKNIKPSWRGELEITDAIQWLIEKGYKVGGSKVT 215 (353)
T ss_pred EEECHHHHHHHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEEeC
Confidence 7899977766521111 111111245667777888887766543
No 174
>PRK10122 GalU regulator GalF; Provisional
Probab=92.19 E-value=5 Score=31.98 Aligned_cols=108 Identities=24% Similarity=0.307 Sum_probs=65.2
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHH-------------------HHHHHh-CCCcEEEee
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVK-------------------QLQQLY-GEDRILLRP 73 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~-------------------~~~~~~-~~~~~~~~~ 73 (242)
.+|.-++ +.|...++++.+. .--+|+|+-.-..+...+.+. .+.... ++.++.++.
T Consensus 28 llpi~gk-piI~~~l~~l~~~---Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~~~~i~~~~ 103 (297)
T PRK10122 28 MLPIVDK-PMIQYIVDEIVAA---GIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVR 103 (297)
T ss_pred eeEECCE-EHHHHHHHHHHHC---CCCEEEEEcCCChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCCCceEEEee
Confidence 4555565 7888888888765 223666664432221111111 000100 223567777
Q ss_pred CCCCcchHHHHHHHHhhcC-CCEEEEEeCCCCCCCC-------ChHHHHHHHHhcCCcEEE
Q 026146 74 RPKKLGLGTAYIHGLKHAS-GSFVVIMDADLSHHPK-------YLPSFIKKQLETGASIVT 126 (242)
Q Consensus 74 ~~~~~g~~~a~n~g~~~a~-~d~i~~lD~D~~~~~~-------~l~~l~~~~~~~~~~~v~ 126 (242)
.++..|.+.|.-.+..... .++++++ +|..++++ .+..+++...+.+.+++.
T Consensus 104 q~~~lGtg~al~~a~~~l~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~~ 163 (297)
T PRK10122 104 QGQPLGLGHSILCARPAIGDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFNETGRSQVL 163 (297)
T ss_pred cCCcCchHHHHHHHHHHcCCCCEEEEE-CCeeccCccccccchhHHHHHHHHHHhCCcEEE
Confidence 7778999999999988864 4566555 88777543 478888877666655443
No 175
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.00 E-value=0.67 Score=39.27 Aligned_cols=89 Identities=11% Similarity=0.132 Sum_probs=57.1
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC---CCEE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS---GSFV 96 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~---~d~i 96 (242)
....+..+++.+.+. ..-++++|-.-. .+.++++.. ...+.++..+...|.+.+...+++... .+++
T Consensus 32 gkpli~~~l~~l~~~---~~~~iivv~~~~----~~~i~~~~~---~~~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~v 101 (456)
T PRK14356 32 GEPMLRFVYRALRPL---FGDNVWTVVGHR----ADMVRAAFP---DEDARFVLQEQQLGTGHALQCAWPSLTAAGLDRV 101 (456)
T ss_pred CCcHHHHHHHHHHhc---CCCcEEEEECCC----HHHHHHhcc---ccCceEEEcCCCCCcHHHHHHHHHHHhhcCCCcE
Confidence 346667777777554 122566654422 222333322 224666666666788888888876653 5899
Q ss_pred EEEeCCC-CCCCCChHHHHHHHH
Q 026146 97 VIMDADL-SHHPKYLPSFIKKQL 118 (242)
Q Consensus 97 ~~lD~D~-~~~~~~l~~l~~~~~ 118 (242)
+++++|. .++++.++.+++...
T Consensus 102 lv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 102 LVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred EEEeCCcccCCHHHHHHHHHHHh
Confidence 9999998 478888999888764
No 176
>PLN02436 cellulose synthase A
Probab=91.70 E-value=0.13 Score=47.19 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=42.2
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCC-CCCCChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLS-HHPKYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~ 120 (242)
.+.|+.++++.| |++|+|..++-+ .++||+-+|.|-. -++..+...+-.+.+.
T Consensus 533 ~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~ 595 (1094)
T PLN02436 533 RLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDP 595 (1094)
T ss_pred eEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhhcCC
Confidence 466666665555 899999999865 5899999999986 5688999999888754
No 177
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=91.40 E-value=0.75 Score=37.96 Aligned_cols=105 Identities=10% Similarity=0.043 Sum_probs=61.2
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC-------CCcEEEe----eCCC---Ccc
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG-------EDRILLR----PRPK---KLG 79 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~-------~~~~~~~----~~~~---~~g 79 (242)
.+|.-+....|...|+.|.+. .--+|+|+-.--. +.++++.+... ...+.++ ...+ ..|
T Consensus 28 llpv~gk~pli~~~l~~l~~~---Gi~~i~iv~~~~~----~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G 100 (380)
T PRK05293 28 AVPFGGKYRIIDFTLSNCANS---GIDTVGVLTQYQP----LELNNHIGIGSPWDLDRINGGVTILPPYSESEGGKWYKG 100 (380)
T ss_pred eeeeCCceeehhHHHHHHHhC---CCCEEEEEecCCH----HHHHHHHhCCCcccccCCCCCEEEeCCcccCCCCcccCC
Confidence 456656546788889988764 2226777654322 22333322110 0113332 2222 268
Q ss_pred hHHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 80 LGTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 80 ~~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
-+.|+..+..... .+.++++.+|.+.+. .+..+++...+.+.++.+
T Consensus 101 ta~al~~a~~~l~~~~~~~~lV~~gD~l~~~-d~~~ll~~h~~~~~~~tl 149 (380)
T PRK05293 101 TAHAIYQNIDYIDQYDPEYVLILSGDHIYKM-DYDKMLDYHKEKEADVTI 149 (380)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEecCCEEEcC-CHHHHHHHHHhcCCCEEE
Confidence 8888888887754 478999999987655 456677766555665433
No 178
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=91.38 E-value=3.5 Score=31.74 Aligned_cols=96 Identities=13% Similarity=0.109 Sum_probs=59.7
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCc-----------c-hHHHHH
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKL-----------G-LGTAYI 85 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~-----------g-~~~a~n 85 (242)
.|-...+.-++.||.+.... .+.++|++++-+++..+.++++...+ +..+.++..+... . .+..+-
T Consensus 10 ~~y~~~~~v~i~Sl~~~~~~-~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~y~RL 87 (246)
T cd00505 10 DEYLRGAIVLMKSVLRHRTK-PLRFHVLTNPLSDTFKAALDNLRKLY-NFNYELIPVDILDSVDSEHLKRPIKIVTLTKL 87 (246)
T ss_pred cchhHHHHHHHHHHHHhCCC-CeEEEEEEccccHHHHHHHHHHHhcc-CceEEEEeccccCcchhhhhcCccccceeHHH
Confidence 34556677888998887543 78999999987777777787765433 2345555432110 0 111222
Q ss_pred HHHhhcC-CCEEEEEeCCCCCCCCChHHHHHH
Q 026146 86 HGLKHAS-GSFVVIMDADLSHHPKYLPSFIKK 116 (242)
Q Consensus 86 ~g~~~a~-~d~i~~lD~D~~~~~~~l~~l~~~ 116 (242)
...+... .+-+++||+|.++. +-+..+...
T Consensus 88 ~i~~llp~~~kvlYLD~D~iv~-~di~~L~~~ 118 (246)
T cd00505 88 HLPNLVPDYDKILYVDADILVL-TDIDELWDT 118 (246)
T ss_pred HHHHHhhccCeEEEEcCCeeec-cCHHHHhhc
Confidence 2323333 68899999998876 556666654
No 179
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=91.38 E-value=6.3 Score=31.50 Aligned_cols=109 Identities=19% Similarity=0.196 Sum_probs=63.1
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH---HH------------HH-----hCCCcEEEee
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ---LQ------------QL-----YGEDRILLRP 73 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~---~~------------~~-----~~~~~~~~~~ 73 (242)
.+|.-++ ..+..+++++.+. .--+|+|+-+-..+...+.+.. +. .+ .+...+.+..
T Consensus 33 l~pv~g~-pii~~~l~~l~~~---gi~~i~vv~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~e~~~i~~~~~~i~~~~ 108 (302)
T PRK13389 33 MLPLVDK-PLIQYVVNECIAA---GITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHVTIMQVR 108 (302)
T ss_pred eeEECCE-EHHHHHHHHHHHC---CCCEEEEEeCCCHHHHHHHHccchhhhhhhhhhhhhHHHHhhhhccccCceEEEee
Confidence 4455554 7788888888765 2236666655433322222221 00 00 0112344444
Q ss_pred CCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCC-------CCChHHHHHHHHhcCCcEEE
Q 026146 74 RPKKLGLGTAYIHGLKHASGSFVVIMDADLSHH-------PKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 74 ~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~-------~~~l~~l~~~~~~~~~~~v~ 126 (242)
.....|.+.|.-.+......+-++++.+|..++ ...+..+++.+.+.+.+.+.
T Consensus 109 q~~~~Gtg~Av~~a~~~~~~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~tl~ 168 (302)
T PRK13389 109 QGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHSQIM 168 (302)
T ss_pred cCCCCChHHHHHHHHHHcCCCCEEEEeCcceecccccccccccHHHHHHHHHhcCCCEEE
Confidence 455678888888887775545567777887764 36788888877665555433
No 180
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=91.24 E-value=0.73 Score=36.81 Aligned_cols=97 Identities=19% Similarity=0.110 Sum_probs=57.3
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHH--HH-HHHhCCCcEEEeeCCCCcc------hHHHHHHHHh
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVK--QL-QQLYGEDRILLRPRPKKLG------LGTAYIHGLK 89 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~--~~-~~~~~~~~~~~~~~~~~~g------~~~a~n~g~~ 89 (242)
.++....+|++++.+.. |..+||+--=...|- +.+. ++ ..+.|+..+.........+ .-.+-..|++
T Consensus 17 ~~~~~t~~~l~siR~~~--P~A~IILSTW~~~d~--~~l~~D~vv~s~DPG~~~~~~~~~~~~~~~NiNrQi~St~aGL~ 92 (311)
T PF07507_consen 17 QEPDITKNCLASIRKHF--PGAEIILSTWEGQDI--SGLDYDQVVISDDPGSNVVLYKKDGKPGPNNINRQIVSTLAGLK 92 (311)
T ss_pred ccchhHHHHHHHHHHhC--CCCEEEEECCCCCCc--ccCCcceEEecCCCCcceeeccCCCCCcccchhHHHHHHHHHHH
Confidence 35566789999998876 677888753322221 1111 11 1223443433232222212 2334448999
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
+|+.+|++=+-+|..+..+.+-++.+.+.+
T Consensus 93 ~~~~~Ya~KlRtD~~l~~~~~l~~~~~~~~ 122 (311)
T PF07507_consen 93 AAKTKYAMKLRTDNRLTGNNFLDLYEKYPD 122 (311)
T ss_pred HhCCceEEEEcccccccchHHHHHHHHhcc
Confidence 999999999999999776666666665543
No 181
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=91.22 E-value=3.4 Score=30.96 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=59.0
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc-CCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA-SGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a-~~d~i~ 97 (242)
+....+..+++.+.+.. ..-+++|+-+.. ..+.+.+..... ..+.++.... +...+...|++.. ..|+++
T Consensus 25 ~gkpll~~~l~~l~~~~--~~~~ivVv~~~~---~~~~~~~~~~~~--~~~~~~~~~~--~~~~sl~~~l~~~~~~d~vl 95 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHP--AIDEVVVVVSPE---DQEFFQKYLVAR--AVPKIVAGGD--TRQDSVRNGLKALKDAEWVL 95 (217)
T ss_pred CCeEHHHHHHHHHhcCC--CCCEEEEEEChH---HHHHHHHHhhcC--CcEEEeCCCc--hHHHHHHHHHHhCCCCCEEE
Confidence 45677888888886531 123677775432 112232222111 1234443222 4567788888877 679999
Q ss_pred EEeCCCC-CCCCChHHHHHHHHhcC
Q 026146 98 IMDADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
++++|.- ++++.+..+++.+.+.+
T Consensus 96 v~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 96 VHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred EccCccCCCCHHHHHHHHHHHhhCC
Confidence 9999986 89999999999886543
No 182
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=90.92 E-value=2.6 Score=28.66 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=47.8
Q ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc--CCCEEEEEeCCCC-CCCCChHHHH
Q 026146 38 VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--SGSFVVIMDADLS-HHPKYLPSFI 114 (242)
Q Consensus 38 ~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--~~d~i~~lD~D~~-~~~~~l~~l~ 114 (242)
...+++|.-++..+..... +. .. ...+.+.... ....+.-++.+++.+ ..+-++++-+|+. ++++.+.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~--~~-~~--~~~~~~~~Q~-g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A~ 82 (122)
T PF09837_consen 9 DGADVVLAYTPDGDHAAFR--QL-WL--PSGFSFFPQQ-GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQAF 82 (122)
T ss_dssp SSSEEEEEE----TTHHHH--HH-HH---TTSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHHH
T ss_pred CCcCEEEEEcCCccHHHHh--cc-cc--CCCCEEeecC-CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHHH
Confidence 4567777777766543321 11 11 1245555543 345677777777776 4578999999998 8999999999
Q ss_pred HHHHhcCCcEEEEEE
Q 026146 115 KKQLETGASIVTGTR 129 (242)
Q Consensus 115 ~~~~~~~~~~v~~~~ 129 (242)
+.++. .++|.|+.
T Consensus 83 ~~L~~--~d~VlgPa 95 (122)
T PF09837_consen 83 EALQR--HDVVLGPA 95 (122)
T ss_dssp HHTTT---SEEEEEB
T ss_pred HHhcc--CCEEEeec
Confidence 98854 47887753
No 183
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=90.87 E-value=2.6 Score=37.14 Aligned_cols=162 Identities=12% Similarity=0.038 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCCCh-HHHHHHHHHHhCCCcEEEeeCCC---Ccc-hH-HHHHHHHhhcCCCEEEEEeCCCCCCCCChHHH
Q 026146 40 FEIIVVDDGSPDGT-QEVVKQLQQLYGEDRILLRPRPK---KLG-LG-TAYIHGLKHASGSFVVIMDADLSHHPKYLPSF 113 (242)
Q Consensus 40 ~eiivvd~~s~d~t-~~~l~~~~~~~~~~~~~~~~~~~---~~g-~~-~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l 113 (242)
+.+.++-.-+.++. ...+++=++.|. .+.....-. |.. |. ..+..+....+.+|++..|+|..+..+-|-+.
T Consensus 419 v~~rFvVG~s~n~~l~~~L~~Ea~~yg--DIIq~dF~DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~ 496 (636)
T PLN03133 419 VAVRFFVGLHKNQMVNEELWNEARTYG--DIQLMPFVDYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLAS 496 (636)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHcC--CeEEEeeechhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHH
Confidence 44555554444433 334444444554 444444332 222 11 12334444456899999999999987755555
Q ss_pred HHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHHhhhcc----cCCCc
Q 026146 114 IKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISSC----VSKGY 189 (242)
Q Consensus 114 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~----~~~~~ 189 (242)
++... ....+.+|.........+. + .++++-....+....-.+...|++.++++++.+.+.... .....
T Consensus 497 L~~~~-~~~~Ly~G~v~~~~~PiRd-~-----~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~ 569 (636)
T PLN03133 497 LKRTN-VSHGLLYGLINSDSQPHRN-P-----DSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFK 569 (636)
T ss_pred HHhcC-CCCceEEEEeccCCCcccC-C-----CCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCC
Confidence 54322 2335666654432111000 0 000000001111222244567888899999999983321 22333
Q ss_pred ccchHHHHHHH---HcCCceEEee
Q 026146 190 VFQMEMIVRAC---RKGYHIEEVP 210 (242)
Q Consensus 190 ~~d~~~~~~~~---~~g~~i~~~p 210 (242)
.||.-+..-+. ..|.++.+..
T Consensus 570 lEDVyvGi~l~~l~k~gl~v~~~~ 593 (636)
T PLN03133 570 LEDVAMGIWIAEMKKEGLEVKYEN 593 (636)
T ss_pred hhhHhHHHHHHHhcccCCCceeeC
Confidence 68877766543 4577766554
No 184
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=90.61 E-value=3.6 Score=29.88 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=55.5
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC-CCcchHHHHHHHHhhc---CCCEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP-KKLGLGTAYIHGLKHA---SGSFV 96 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~a~n~g~~~a---~~d~i 96 (242)
...++.+++.+... .-+++|+-+.... .. ...+.++... ...|...+.-.|++.+ +.+++
T Consensus 15 ~~ll~~~~~~l~~~----~~~iivv~~~~~~-----~~-------~~~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~ 78 (178)
T PRK00576 15 TTLVEHVVGIVGQR----CAPVFVMAAPGQP-----LP-------ELPAPVLRDELRGLGPLPATGRGLRAAAEAGARLA 78 (178)
T ss_pred cCHHHHHHHHHhhc----CCEEEEECCCCcc-----cc-------cCCCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEE
Confidence 56678888876543 2367777553311 11 1123444422 2356667666667654 57999
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCcEE
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v 125 (242)
+++=+|.- ++++.++.++......+..++
T Consensus 79 lv~~~DmP~i~~~~i~~L~~~~~~~~~~~~ 108 (178)
T PRK00576 79 FVCAVDMPYLTVELIDDLARPAAQTDAEVV 108 (178)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhhcCCCcEE
Confidence 99999988 789999999987655444444
No 185
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=90.38 E-value=3.8 Score=31.52 Aligned_cols=94 Identities=14% Similarity=0.155 Sum_probs=57.9
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC-----------Ccc-hHHHHHHH
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK-----------KLG-LGTAYIHG 87 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~-----------~~g-~~~a~n~g 87 (242)
-...+.-++.|+.+......+.++|+.++-++...+.++++.... ...+.++.-+. ... ...++-..
T Consensus 11 y~~~~~~~l~Sl~~~~~~~~~~~~il~~~is~~~~~~L~~~~~~~-~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l 89 (248)
T cd04194 11 YAPYLAVTIKSILANNSKRDYDFYILNDDISEENKKKLKELLKKY-NSSIEFIKIDNDDFKFFPATTDHISYATYYRLLI 89 (248)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEEeCCCCHHHHHHHHHHHHhc-CCeEEEEEcCHHHHhcCCcccccccHHHHHHHHH
Confidence 345567788888776543478899999887777888888876642 23555554321 011 12223333
Q ss_pred HhhcC-CCEEEEEeCCCCCCCCChHHHHH
Q 026146 88 LKHAS-GSFVVIMDADLSHHPKYLPSFIK 115 (242)
Q Consensus 88 ~~~a~-~d~i~~lD~D~~~~~~~l~~l~~ 115 (242)
.+.-. .+.+++||+|.++-. -+..+..
T Consensus 90 ~~ll~~~~rvlylD~D~lv~~-di~~L~~ 117 (248)
T cd04194 90 PDLLPDYDKVLYLDADIIVLG-DLSELFD 117 (248)
T ss_pred HHHhcccCEEEEEeCCEEecC-CHHHHhc
Confidence 33333 788999999987655 4555554
No 186
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=89.72 E-value=7.3 Score=29.54 Aligned_cols=184 Identities=14% Similarity=0.162 Sum_probs=96.4
Q ss_pred CcEEEEEeCcc--------------ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC
Q 026146 9 NKYSIIIPTYN--------------ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR 74 (242)
Q Consensus 9 ~~isiiip~~n--------------~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~ 74 (242)
+++.||||++= ....+..+.+...+. .--+++|--|. .++++ ....++ ..+..-..
T Consensus 2 ~~~~viIPAR~~STRLpgKPLadI~GkpmI~rV~e~a~~s---~~~rvvVATDd-----e~I~~-av~~~G-~~avmT~~ 71 (247)
T COG1212 2 MKFVVIIPARLASTRLPGKPLADIGGKPMIVRVAERALKS---GADRVVVATDD-----ERIAE-AVQAFG-GEAVMTSK 71 (247)
T ss_pred CceEEEEecchhcccCCCCchhhhCCchHHHHHHHHHHHc---CCCeEEEEcCC-----HHHHH-HHHHhC-CEEEecCC
Confidence 46889999962 123344444444333 22355655442 22222 223332 24444444
Q ss_pred CCCcchHHHHHHHHhhc---CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCC---------------
Q 026146 75 PKKLGLGTAYIHGLKHA---SGSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGG--------------- 135 (242)
Q Consensus 75 ~~~~g~~~a~n~g~~~a---~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~--------------- 135 (242)
+.+.| ..=..++++.. +.++|+=+-+|.- ++|..+..+.+.+++.++++++........+
T Consensus 72 ~h~SG-TdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~ 150 (247)
T COG1212 72 DHQSG-TDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKE 150 (247)
T ss_pred CCCCc-cHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCC
Confidence 43434 33444555554 4688999999977 7899999999999988888887533222111
Q ss_pred ccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHH--HHHHHcCCceEEee
Q 026146 136 VHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMI--VRACRKGYHIEEVP 210 (242)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~--~~~~~~g~~i~~~p 210 (242)
.....|.+....+.. .. .+.....-.=|.+.||++++++...+ .....|+.|-. +|+...|.+|...-
T Consensus 151 g~ALYFSRs~iP~~r----d~-~~~~p~l~HIGIYayr~~~L~~f~~~--~ps~LE~~E~LEQLR~Le~G~kI~v~i 220 (247)
T COG1212 151 GYALYFSRAPIPYGR----DN-FGGTPFLRHIGIYAYRAGFLERFVAL--KPSPLEKIESLEQLRVLENGEKIHVEI 220 (247)
T ss_pred CcEEEEEcCCCCCcc----cc-cCCcchhheeehHHhHHHHHHHHHhc--CCchhHHHHHHHHHHHHHcCCeeEEEE
Confidence 011111111110000 00 00000111124458999999998543 22333444433 67889999987653
No 187
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=89.65 E-value=1.1 Score=36.76 Aligned_cols=108 Identities=15% Similarity=0.082 Sum_probs=69.8
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCC--cEEEeeCCCCc------c
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGED--RILLRPRPKKL------G 79 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~--~~~~~~~~~~~------g 79 (242)
|.+.+.+..+|-...++..+..+.++.++ ....|++-.|-+.|.+.++++++.++.... .|.+....+.. |
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~freWL~nv~~~y~~V~~e~~~e~~s~~d~~~ 82 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFREWLENVGDLYHRVKWEPFIEPKSYPDEHG 82 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHHHHHhcCCccceeEEEecCCccccCcccC
Confidence 56777777888888888888888777665 345677777889999999999887764321 23332222111 1
Q ss_pred ------h-----HHHHHHHHhhcC---CCEEEEEeCCCCCC-CCChHHHHHH
Q 026146 80 ------L-----GTAYIHGLKHAS---GSFVVIMDADLSHH-PKYLPSFIKK 116 (242)
Q Consensus 80 ------~-----~~a~n~g~~~a~---~d~i~~lD~D~~~~-~~~l~~l~~~ 116 (242)
. -.-..++++.++ .||++|.|.|+.+. ++.|..++..
T Consensus 83 pk~W~~sr~q~lm~lKeea~~~~r~~~adyilf~d~d~lLts~dTl~llm~l 134 (568)
T KOG4179|consen 83 PKHWPDSRFQHLMSLKEEALNWARSGWADYILFKDEDNLLTSGDTLPLLMNL 134 (568)
T ss_pred CccCchHHHHHHHHHHHHHHHHHHhhhcceeEEeehhheeeCCchHhHHHhc
Confidence 0 111233444443 69999999999954 5566665543
No 188
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=88.93 E-value=2.8 Score=32.68 Aligned_cols=104 Identities=22% Similarity=0.249 Sum_probs=67.3
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCC-------ChH------------HHHHHHHHHhCCCcEEEeeCCCCcchH
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPD-------GTQ------------EVVKQLQQLYGEDRILLRPRPKKLGLG 81 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d-------~t~------------~~l~~~~~~~~~~~~~~~~~~~~~g~~ 81 (242)
.+.++-.++...+. .--+|++|-..+.. .+. +.++.+.+.-+..++.+++.++..|.+
T Consensus 35 KP~IqYiVeEa~~a---GIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~~~K~~~L~~v~~i~~~~~i~~vRQ~e~~GLG 111 (291)
T COG1210 35 KPLIQYIVEEAVAA---GIEEILIVTGRGKRAIEDHFDTSYELENTLEKRGKRELLEEVRSIPPLVTISFVRQKEPLGLG 111 (291)
T ss_pred chhHHHHHHHHHHc---CCCEEEEEecCCcchHHHhCcCcHHHHHHHHHhCHHHHHHHHHhcccCceEEEEecCCCCcch
Confidence 35566666665544 23367777665543 111 223333222234579999999999999
Q ss_pred HHHHHHHhhcCCC-EEEEEeCCCCCC-CCChHHHHHHHHhcCCcEEEE
Q 026146 82 TAYIHGLKHASGS-FVVIMDADLSHH-PKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 82 ~a~n~g~~~a~~d-~i~~lD~D~~~~-~~~l~~l~~~~~~~~~~~v~~ 127 (242)
.|..+|=.....+ +.++|-+|...+ +..+.++++.+++.+..++..
T Consensus 112 hAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v 159 (291)
T COG1210 112 HAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGV 159 (291)
T ss_pred hHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEE
Confidence 9999999988776 555555555444 678999999998766655544
No 189
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=88.53 E-value=8.7 Score=28.84 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=55.9
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC-------CCcEEEeeCCCCcchHHHHHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG-------EDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~-------~~~~~~~~~~~~~g~~~a~n~ 86 (242)
.+|.-|. ..|...|+++.+. .--+|+|+-+...+. ++++.+... ...+.++..++..|.+.|...
T Consensus 25 llpi~g~-piI~~~l~~l~~~---Gi~~I~iv~~~~~~~----i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~al~~ 96 (217)
T cd04197 25 LLPLANV-PLIDYTLEFLALN---GVEEVFVFCCSHSDQ----IKEYIEKSKWSKPKSSLMIVIIIMSEDCRSLGDALRD 96 (217)
T ss_pred eeEECCE-ehHHHHHHHHHHC---CCCeEEEEeCCCHHH----HHHHHhhccccccccCcceEEEEeCCCcCccchHHHH
Confidence 5666676 6888899998765 233677776643322 333333211 124666666655666655543
Q ss_pred HHhhc-CCCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 87 GLKHA-SGSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 87 g~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
..... -.+.++++.+|.+.+. -+..+++...+
T Consensus 97 ~~~~~~~~~~flv~~gD~i~~~-dl~~~l~~h~~ 129 (217)
T cd04197 97 LDAKGLIRGDFILVSGDVVSNI-DLKEILEEHKE 129 (217)
T ss_pred HhhccccCCCEEEEeCCeeecc-CHHHHHHHHHH
Confidence 22211 1345779999977654 46777777665
No 190
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=88.50 E-value=11 Score=30.75 Aligned_cols=106 Identities=15% Similarity=0.087 Sum_probs=67.2
Q ss_pred CcEEEEEeCcc-ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC----------CC
Q 026146 9 NKYSIIIPTYN-ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP----------KK 77 (242)
Q Consensus 9 ~~isiiip~~n-~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~----------~~ 77 (242)
+.+.|+..+=+ -...+.-++.|+........+.+.|++++-+++..+.++++...++ ..+.++.-+ .+
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn~~~~~~f~Il~~~is~e~~~~l~~l~~~~~-~~i~~~~id~~~~~~~~~~~~ 102 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNNPDKSLVFHVFTDYISDADKQRFSALAKQYN-TRINIYLINCERLKSLPSTKN 102 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCCHHHHHHHHHHHHhcC-CeEEEEEeCHHHHhCCcccCc
Confidence 56777777733 3466677888887654334689999999888888888888877764 345544321 11
Q ss_pred cc-hHHHHHHHHhhc--CCCEEEEEeCCCCCCCCChHHHHHH
Q 026146 78 LG-LGTAYIHGLKHA--SGSFVVIMDADLSHHPKYLPSFIKK 116 (242)
Q Consensus 78 ~g-~~~a~n~g~~~a--~~d~i~~lD~D~~~~~~~l~~l~~~ 116 (242)
.. ....|-..-+.- .-|-++.||+|.++.. .+.+|...
T Consensus 103 ~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~-dl~~L~~~ 143 (334)
T PRK15171 103 WTYATYFRFIIADYFIDKTDKVLYLDADIACKG-SIKELIDL 143 (334)
T ss_pred CCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecC-CHHHHHhc
Confidence 11 122222222332 4689999999977654 56666644
No 191
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=87.47 E-value=0.25 Score=45.24 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred cEEEeeCCCCcc-----hHHHHHHHHhhc----CCCEEEEEeCCCCC-CCCChHHHHHHHHhc
Q 026146 68 RILLRPRPKKLG-----LGTAYIHGLKHA----SGSFVVIMDADLSH-HPKYLPSFIKKQLET 120 (242)
Q Consensus 68 ~~~~~~~~~~~g-----~~~a~n~g~~~a----~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~ 120 (242)
.+.|+.++++.| |++|+|.-++-+ .++||+-+|.|-.. ++..+...+-.+.+.
T Consensus 455 ~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~lD~ 517 (1044)
T PLN02915 455 RLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDP 517 (1044)
T ss_pred eeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceeeecC
Confidence 456666555555 899999999876 58999999999885 577888888777653
No 192
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.32 E-value=2.8 Score=35.57 Aligned_cols=170 Identities=11% Similarity=0.122 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-CCEEEEEe
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS-GSFVVIMD 100 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-~d~i~~lD 100 (242)
..++..++++.+. ..-+++++-.-. .+.+++.... ..+.++..+...|.+.+.-.++.... .+++++++
T Consensus 34 pli~~~i~~l~~~---gi~~i~vv~~~~----~~~i~~~~~~---~~~~~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~ 103 (456)
T PRK09451 34 PMVQHVIDAANEL---GAQHVHLVYGHG----GDLLKQTLAD---EPLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLY 103 (456)
T ss_pred hHHHHHHHHHHhc---CCCcEEEEECCC----HHHHHHhhcc---CCcEEEECCCCCCcHHHHHHHHHhhccCCcEEEEe
Confidence 3445666666543 122566665422 1233333221 24666666666788888888887764 57899999
Q ss_pred CCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCC-------ccccccchhhc
Q 026146 101 ADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPG-------VSDLTGSFRLY 172 (242)
Q Consensus 101 ~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~ 172 (242)
+|.. +.+..++.+++...+.+..+ ..... .+....+.- .. . ..........+. ......+.+++
T Consensus 104 gD~P~i~~~~i~~l~~~~~~~~~~i-~~~~~-~~~~~yG~v-~~---~--~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~ 175 (456)
T PRK09451 104 GDVPLISVETLQRLRDAKPQGGIGL-LTVKL-DNPTGYGRI-TR---E--NGKVVGIVEQKDATDEQRQIQEINTGILVA 175 (456)
T ss_pred CCcccCCHHHHHHHHHHhhcCCEEE-EEEEc-CCCCCceEE-Ee---c--CCeEEEEEECCCCChHHhhccEEEEEEEEE
Confidence 9974 67778888887654433222 22111 111100100 00 0 000000000000 11235566789
Q ss_pred chHHHHHhhhcccC---CCcccchHHHHHHHHcCCceEEe
Q 026146 173 KKSVLEDVISSCVS---KGYVFQMEMIVRACRKGYHIEEV 209 (242)
Q Consensus 173 rr~~~~~~~~~~~~---~~~~~d~~~~~~~~~~g~~i~~~ 209 (242)
+++.|.+....... ....+-.++...+...|+++...
T Consensus 176 ~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v~~~ 215 (456)
T PRK09451 176 NGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREIVAV 215 (456)
T ss_pred EHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeEEEE
Confidence 98888764221111 11112247888888899887766
No 193
>PLN02190 cellulose synthase-like protein
Probab=86.94 E-value=1.6 Score=39.00 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 7 NKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 7 ~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
..|.|.|.|+|++ |+.. +..++-|+.+..++ ....++|-|||.+.-|.+.+.+.+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa 150 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEAS 150 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHH
Confidence 3589999999999 5543 36788888888777 577899999999998888777654
No 194
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=86.89 E-value=7.4 Score=32.23 Aligned_cols=91 Identities=13% Similarity=0.027 Sum_probs=55.3
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEe
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMD 100 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD 100 (242)
...+..+++.+.+.. .--+|+||-+.. ..+..+.+....+ .+.++.. ..+...+...|++....+++++.|
T Consensus 33 kPll~~tl~~l~~~~--~i~~IvVVv~~~---~~~~~~~~~~~~~--~v~~v~g--G~~r~~SV~~gL~~l~~d~VLVhd 103 (378)
T PRK09382 33 KPLWLHVLENLSSAP--AFKEIVVVIHPD---DIAYMKKALPEIK--FVTLVTG--GATRQESVRNALEALDSEYVLIHD 103 (378)
T ss_pred eeHHHHHHHHHhcCC--CCCeEEEEeChH---HHHHHHHhcccCC--eEEEeCC--CchHHHHHHHHHHhcCCCeEEEee
Confidence 455666777765441 112666665422 2233333322111 2444432 234677788888887779999999
Q ss_pred CCCC-CCCCChHHHHHHHHhc
Q 026146 101 ADLS-HHPKYLPSFIKKQLET 120 (242)
Q Consensus 101 ~D~~-~~~~~l~~l~~~~~~~ 120 (242)
+|-. ++++.++++++.+.+.
T Consensus 104 adrPfv~~e~I~~li~~~~~~ 124 (378)
T PRK09382 104 AARPFVPKELIDRLIEALDKA 124 (378)
T ss_pred ccccCCCHHHHHHHHHHhhcC
Confidence 9965 7899999999887543
No 195
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=86.38 E-value=13 Score=28.45 Aligned_cols=91 Identities=20% Similarity=0.174 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC---CCEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS---GSFVV 97 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~---~d~i~ 97 (242)
...+..+|+.+.... .--+|||+-+...+.....+-. .....++.++.- ......+...|++... .+||+
T Consensus 32 ~pll~~tl~~f~~~~--~i~~Ivvv~~~~~~~~~~~~~~---~~~~~~v~~v~G--G~~R~~SV~~gL~~~~~~~~~~Vl 104 (230)
T COG1211 32 RPLLEHTLEAFLESP--AIDEIVVVVSPEDDPYFEKLPK---LSADKRVEVVKG--GATRQESVYNGLQALSKYDSDWVL 104 (230)
T ss_pred EEehHHHHHHHHhCc--CCCeEEEEEChhhhHHHHHhhh---hccCCeEEEecC--CccHHHHHHHHHHHhhccCCCEEE
Confidence 456777888876653 2337888877655443332222 111235666643 2357778888888876 78888
Q ss_pred EEeCC-CCCCCCChHHHHHHHH
Q 026146 98 IMDAD-LSHHPKYLPSFIKKQL 118 (242)
Q Consensus 98 ~lD~D-~~~~~~~l~~l~~~~~ 118 (242)
+-|+= ..++++.+++++....
T Consensus 105 vHDaaRPf~~~~~i~~li~~~~ 126 (230)
T COG1211 105 VHDAARPFLTPKLIKRLIELAD 126 (230)
T ss_pred EeccccCCCCHHHHHHHHHhhc
Confidence 88884 5588999999995443
No 196
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=86.04 E-value=1 Score=38.51 Aligned_cols=92 Identities=9% Similarity=0.079 Sum_probs=63.2
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHH-HHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVK-QLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~-~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
.-.++|++.||.+++.+...|+.|... .+ --.|+||=|+..+...+..- ++ +..+.+++-++|. -.++-.
T Consensus 648 REQFTvVmLTYERe~VLm~sLeRL~gL-PY-LnKvvVVWNspk~P~ddl~WPdi-----gvPv~viR~~~Ns--LNNRFl 718 (907)
T KOG2264|consen 648 REQFTVVMLTYEREAVLMGSLERLHGL-PY-LNKVVVVWNSPKDPPDDLTWPDI-----GVPVEVIRVAENS--LNNRFL 718 (907)
T ss_pred cceEEEEEEEehHHHHHHHHHHHhhCC-cc-cceEEEEeCCCCCChhcccCcCC-----CCceEEEEccccc--cccccc
Confidence 346999999999999999999998554 32 23688888877766543221 12 3467778766552 123334
Q ss_pred HHhhcCCCEEEEEeCCCCCCCC
Q 026146 87 GLKHASGSFVVIMDADLSHHPK 108 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~ 108 (242)
-++...++.|+-+|+|.-+..+
T Consensus 719 Pwd~IETEAvLS~DDDahLrhd 740 (907)
T KOG2264|consen 719 PWDRIETEAVLSLDDDAHLRHD 740 (907)
T ss_pred Cchhhhheeeeecccchhhhhh
Confidence 5667789999999999665443
No 197
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=85.96 E-value=11 Score=29.12 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=60.8
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC--C---C--cch----HHHHHHHH
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP--K---K--LGL----GTAYIHGL 88 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~--~---~--~g~----~~a~n~g~ 88 (242)
-...+.-++.|+.... ...+.++|++++-+++..+.++++...++ ..+.++.-. . . ... +.++ ..+
T Consensus 12 y~~~~~v~l~Sll~nn-~~~~~fyil~~~is~e~~~~l~~~~~~~~-~~i~~i~i~~~~~~~~~~~~~~~~~~y~r-L~~ 88 (248)
T cd06432 12 YERFLRIMMLSVMKNT-KSPVKFWFIKNFLSPQFKEFLPEMAKEYG-FEYELVTYKWPRWLHKQTEKQRIIWGYKI-LFL 88 (248)
T ss_pred HHHHHHHHHHHHHHcC-CCCEEEEEEeCCCCHHHHHHHHHHHHHhC-CceEEEEecChhhhhcccccchhHHHHHH-HHH
Confidence 3456778899988775 35799999999988888888988887764 345544432 0 0 011 1122 222
Q ss_pred h-hc--CCCEEEEEeCCCCCCCCChHHHHHH
Q 026146 89 K-HA--SGSFVVIMDADLSHHPKYLPSFIKK 116 (242)
Q Consensus 89 ~-~a--~~d~i~~lD~D~~~~~~~l~~l~~~ 116 (242)
. .- .-+-++.||+|.++. +-+.++...
T Consensus 89 ~~lLP~~vdkvLYLD~Dilv~-~dL~eL~~~ 118 (248)
T cd06432 89 DVLFPLNVDKVIFVDADQIVR-TDLKELMDM 118 (248)
T ss_pred HHhhhhccCEEEEEcCCceec-ccHHHHHhc
Confidence 2 11 358999999998766 667777754
No 198
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=85.47 E-value=12 Score=27.18 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=66.6
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEe
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMD 100 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD 100 (242)
...+-..++.+.+. -.++++.-+-++..|...+.+. .+.++..++ .|+-.-++.+++.... -++++-
T Consensus 27 kpLI~~v~~al~~~----~d~i~v~isp~tp~t~~~~~~~-------gv~vi~tpG-~GYv~Dl~~al~~l~~-P~lvvs 93 (177)
T COG2266 27 KPLIDRVLEALRKI----VDEIIVAISPHTPKTKEYLESV-------GVKVIETPG-EGYVEDLRFALESLGT-PILVVS 93 (177)
T ss_pred ccHHHHHHHHHHhh----cCcEEEEeCCCCHhHHHHHHhc-------CceEEEcCC-CChHHHHHHHHHhcCC-ceEEEe
Confidence 35566777777652 3389999999999998888775 477887664 5899999999999877 667777
Q ss_pred CCCC-CCCCChHHHHHHHH
Q 026146 101 ADLS-HHPKYLPSFIKKQL 118 (242)
Q Consensus 101 ~D~~-~~~~~l~~l~~~~~ 118 (242)
+|.. +.|..+..+++.+.
T Consensus 94 aDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 94 ADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred cccccCCHHHHHHHHHHHh
Confidence 8866 88999999998886
No 199
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=85.15 E-value=5.1 Score=33.88 Aligned_cols=107 Identities=16% Similarity=0.059 Sum_probs=59.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCC--------CcEEEeeCC-------CCc
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGE--------DRILLRPRP-------KKL 78 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~--------~~~~~~~~~-------~~~ 78 (242)
.+|.-++...+...|+.+.+. .--+++++-+-..+...+.+. +.+.. ..+.+.... ...
T Consensus 28 llpv~g~~plId~~L~~l~~~---Gi~~i~iv~~~~~~~i~~~l~---~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~l 101 (436)
T PLN02241 28 AVPIGGNYRLIDIPMSNCINS---GINKIYVLTQFNSASLNRHLS---RAYNFGNGGNFGDGFVEVLAATQTPGEKGWFQ 101 (436)
T ss_pred ceEeCCcceEehHHHHHHHhC---CCCEEEEEeccCHHHHHHHHh---ccCCCCCCcccCCCCEEEcCCcccCCCCcccc
Confidence 456655556778888888754 223666665532222222222 21110 012222211 246
Q ss_pred chHHHHHHHHhhcC------CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 79 GLGTAYIHGLKHAS------GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 79 g~~~a~n~g~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
|.+.|+..++.... .+.++++.+|.+.+ ..+..+++...+.+.++.+.
T Consensus 102 Gt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~-~dl~~ll~~h~~~~a~~ti~ 155 (436)
T PLN02241 102 GTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYR-MDYMDFVQKHRESGADITIA 155 (436)
T ss_pred CcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEc-cCHHHHHHHHHHcCCCEEEE
Confidence 77777766554432 47899999998755 45777777777667765443
No 200
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=85.11 E-value=15 Score=30.96 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=61.9
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC------CCcEEEee-------CCCCcch
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG------EDRILLRP-------RPKKLGL 80 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~------~~~~~~~~-------~~~~~g~ 80 (242)
.+|.-+....|...++.+.+. .--+|+|+-+-..+...+.+. +.+. ...+.++. .+...|-
T Consensus 40 llpv~gkp~lI~~~l~~l~~~---Gi~~i~vv~~~~~~~i~~~~~---~~~~~~~~~~~~~i~i~~~~~~~~~e~~~lGT 113 (425)
T PRK00725 40 AVYFGGKFRIIDFALSNCINS---GIRRIGVLTQYKAHSLIRHIQ---RGWSFFREELGEFVDLLPAQQRVDEENWYRGT 113 (425)
T ss_pred eEEECCEEEEhHHHHHHHHHC---CCCeEEEEecCCHHHHHHHHH---hhhcccccCCCCeEEEeCCcccCCCCccccCc
Confidence 445545444777788888654 223677776643332222222 1111 00122211 1123688
Q ss_pred HHHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 81 GTAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 81 ~~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+.|.-.+..... .++++++.+|.+.+ ..+..+++...+.+.++.++
T Consensus 114 a~al~~a~~~l~~~~~d~~lVl~gD~l~~-~dl~~ll~~h~~~~~~~tl~ 162 (425)
T PRK00725 114 ADAVYQNLDIIRRYDPKYVVILAGDHIYK-MDYSRMLADHVESGADCTVA 162 (425)
T ss_pred HHHHHHHHHHHHhcCCCEEEEecCCeEec-cCHHHHHHHHHHcCCCEEEE
Confidence 888888877654 58899999998654 45788888777666666554
No 201
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=85.07 E-value=2 Score=32.79 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=50.7
Q ss_pred cccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHHHHhCCC-cEEEeeC------------CCCc-chHHHHH
Q 026146 21 RLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQQLYGED-RILLRPR------------PKKL-GLGTAYI 85 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~~~~~~~-~~~~~~~------------~~~~-g~~~a~n 85 (242)
...+.-++.|+.+.... ..+.+++++++.+++..+.+++........ .+..... .... ....++-
T Consensus 11 ~~~~~v~i~Sl~~~~~~~~~~~i~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl 90 (250)
T PF01501_consen 11 LEGAAVLIKSLLKNNPDPSNLHIYIITDDISEEDFEKLRALAAEVIEIEPIEFPDISMLEEFQFNSPSKRHFSPATFARL 90 (250)
T ss_dssp HHHHHHHHHHHHHTTTT-SSEEEEEEESSS-HHHHHHHHHHSCCCCTTECEEETSGGHHH--TTS-HCCTCGGGGGGGGG
T ss_pred HHHHHHHHHHHHHhccccccceEEEecCCCCHHHHHHHhhhcccccceeeeccchHHhhhhhhhcccccccccHHHHHHh
Confidence 34456677888777553 467899898877766666665554332111 1111110 0011 1222333
Q ss_pred HHHhh-cCCCEEEEEeCCCCCCCCChHHHHHH
Q 026146 86 HGLKH-ASGSFVVIMDADLSHHPKYLPSFIKK 116 (242)
Q Consensus 86 ~g~~~-a~~d~i~~lD~D~~~~~~~l~~l~~~ 116 (242)
...+. ...|-+++||+|.++- +-+..+...
T Consensus 91 ~i~~ll~~~drilyLD~D~lv~-~dl~~lf~~ 121 (250)
T PF01501_consen 91 FIPDLLPDYDRILYLDADTLVL-GDLDELFDL 121 (250)
T ss_dssp GHHHHSTTSSEEEEE-TTEEES-S-SHHHHC-
T ss_pred hhHHHHhhcCeEEEEcCCeeee-cChhhhhcc
Confidence 44455 5679999999998874 345555543
No 202
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=85.00 E-value=12 Score=31.35 Aligned_cols=177 Identities=14% Similarity=0.159 Sum_probs=99.7
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc-C-CC-EEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA-S-GS-FVVI 98 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a-~-~d-~i~~ 98 (242)
+.+...++++.... +. ++++|-.-..+. +++...+. ..+.++...+..|-+.|.-.+...- . .+ .+++
T Consensus 31 pMl~hVi~~a~~l~--~~-~i~vVvGh~ae~----V~~~~~~~--~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLV 101 (460)
T COG1207 31 PMLEHVIDAARALG--PD-DIVVVVGHGAEQ----VREALAER--DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLV 101 (460)
T ss_pred cHHHHHHHHHhhcC--cc-eEEEEEcCCHHH----HHHHhccc--cCceEEEecccCChHHHHHhhhhhhhcCCCCcEEE
Confidence 45666777775542 22 455444433332 33222221 1488888888999999999999887 3 23 6899
Q ss_pred EeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhH-------HHHHhHHHHHHHHHhCCCccccccchh
Q 026146 99 MDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMR-------KLTSRGANVLAQTLLWPGVSDLTGSFR 170 (242)
Q Consensus 99 lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (242)
+-+|.. +.++.|+.|++.....+..+.+-.....++...++-... .......+. ....+..+.++.+
T Consensus 102 l~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~-----eek~I~eiNtGiy 176 (460)
T COG1207 102 LYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASE-----EEKQIKEINTGIY 176 (460)
T ss_pred EeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCH-----HHhcCcEEeeeEE
Confidence 999988 788899988888765555554433332222111111000 000000000 1123445667777
Q ss_pred hcchHHHHHhhhc---ccCCCcccchHHHHHHHHcCCceEEeeee
Q 026146 171 LYKKSVLEDVISS---CVSKGYVFQMEMIVRACRKGYHIEEVPIT 212 (242)
Q Consensus 171 ~~rr~~~~~~~~~---~~~~~~~~d~~~~~~~~~~g~~i~~~p~~ 212 (242)
++..+.+.+.... ....+-.+-.|..-.+...|.++..+...
T Consensus 177 ~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~~~g~~V~a~~~~ 221 (460)
T COG1207 177 AFDGAALLRALPKLSNNNAQGEYYLTDVIAIARNEGEKVRAVHVD 221 (460)
T ss_pred EEcHHHHHHHHHHhccccccCcEeHHHHHHHHHhCCCeEEEEecC
Confidence 8887766655332 11222223567788888899888776533
No 203
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=84.98 E-value=14 Score=27.52 Aligned_cols=91 Identities=21% Similarity=0.193 Sum_probs=62.5
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC-CcchHHHHHHHHhhcCCC--EEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK-KLGLGTAYIHGLKHASGS--FVV 97 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~a~n~g~~~a~~d--~i~ 97 (242)
...+..+++.+.+. .--++|||...- ..+....... ...++++.++. ..|.+.++..|+..+.++ .++
T Consensus 31 ~plv~~~~~~a~~a---~~~~vivV~g~~---~~~~~~a~~~---~~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~ 101 (199)
T COG2068 31 KPLVRASAETALSA---GLDRVIVVTGHR---VAEAVEALLA---QLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVV 101 (199)
T ss_pred CcHHHHHHHHHHhc---CCCeEEEEeCcc---hhhHHHhhhc---cCCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEE
Confidence 34455566655443 223777776543 2233333322 24577777664 579999999999999755 999
Q ss_pred EEeCCCC-CCCCChHHHHHHHHhc
Q 026146 98 IMDADLS-HHPKYLPSFIKKQLET 120 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~~~ 120 (242)
++-+|-- +.++.+.+++..+...
T Consensus 102 ~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 102 LMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred EEeCCCCCCCHHHHHHHHHhcccc
Confidence 9999977 8999999999998765
No 204
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=84.89 E-value=14 Score=27.58 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=58.3
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCC---EE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGS---FV 96 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d---~i 96 (242)
..+.+..+++.+++... --+|+|--|. +...+.++++ . ..+.+.+ +.-.........++++...+ ++
T Consensus 23 gkpLi~~~i~~a~~s~~--~d~IvVaTd~--~~i~~~~~~~----g-~~v~~~~-~~~~~~~~r~~~~~~~~~~~~~~~v 92 (217)
T PF02348_consen 23 GKPLIEYVIERAKQSKL--IDEIVVATDD--EEIDDIAEEY----G-AKVIFRR-GSLADDTDRFIEAIKHFLADDEDIV 92 (217)
T ss_dssp TEEHHHHHHHHHHHTTT--TSEEEEEESS--HHHHHHHHHT----T-SEEEE---TTSSSHHHHHHHHHHHHTCSTTSEE
T ss_pred CccHHHHHHHHHHhCCC--CCeEEEeCCC--HHHHHHHHHc----C-CeeEEcC-hhhcCCcccHHHHHHHhhhhHHhhc
Confidence 34667888888876532 2256655442 1233334333 3 3454433 33334555666777777766 99
Q ss_pred EEEeCCCC-CCCCChHHHHHHHHhcCCc
Q 026146 97 VIMDADLS-HHPKYLPSFIKKQLETGAS 123 (242)
Q Consensus 97 ~~lD~D~~-~~~~~l~~l~~~~~~~~~~ 123 (242)
+.+.+|+. ++|..+.++++.+.+...+
T Consensus 93 v~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 93 VRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred cccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 99999988 7899999999999887665
No 205
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=84.44 E-value=15 Score=27.58 Aligned_cols=96 Identities=13% Similarity=0.040 Sum_probs=54.1
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH--hCCCc--EEEeeCCCCcchHHHHHHHHh
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL--YGEDR--ILLRPRPKKLGLGTAYIHGLK 89 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~--~~~~~--~~~~~~~~~~g~~~a~n~g~~ 89 (242)
.+|.-|. ..+..+++.+.+. .--+++|+-....+...+.+.+.... ..... +.+.......|-+.+...+..
T Consensus 25 llpv~g~-pli~~~l~~l~~~---gi~~i~vv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~Gta~~l~~~~~ 100 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEKA---GVEEVFVVCCEHSQAIIEHLLKSKWSSLSSKMIVDVITSDLCESAGDALRLRDIRG 100 (216)
T ss_pred cceECCE-EHHHHHHHHHHHC---CCCeEEEEeCCcHHHHHHHHHhcccccccCCceEEEEEccCCCCCccHHHHHHHhh
Confidence 3455554 7788888888764 22367777654333322222221100 01112 333334457788888888777
Q ss_pred hcCCCEEEEEeCCCCCCCCChHHHHH
Q 026146 90 HASGSFVVIMDADLSHHPKYLPSFIK 115 (242)
Q Consensus 90 ~a~~d~i~~lD~D~~~~~~~l~~l~~ 115 (242)
....+ ++++.+|.+.+.+ +..+++
T Consensus 101 ~i~~d-flv~~gD~i~~~~-l~~~l~ 124 (216)
T cd02507 101 LIRSD-FLLLSCDLVSNIP-LSELLE 124 (216)
T ss_pred cCCCC-EEEEeCCEeecCC-HHHHHH
Confidence 76555 6789999876655 555564
No 206
>PHA01631 hypothetical protein
Probab=84.44 E-value=1.2 Score=31.60 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=39.6
Q ss_pred CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC---CCcchHHHHHHHHhh---cCCCEEEEEeCCCCCCCC
Q 026146 39 DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP---KKLGLGTAYIHGLKH---ASGSFVVIMDADLSHHPK 108 (242)
Q Consensus 39 ~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~---~~~g~~~a~n~g~~~---a~~d~i~~lD~D~~~~~~ 108 (242)
++..++||+.=.+-|.-.++.. ..++...... .+...+..+-..++. ...|+++|+|+|..+++-
T Consensus 17 ~~D~V~VD~~~~~~~~c~~~~~-----~~~Ii~~~t~~e~Rr~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~ 87 (176)
T PHA01631 17 DFDYVVVDKTFNDMTECQIPKY-----QEKIIWIMTNTEIRWLRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNL 87 (176)
T ss_pred cccEEEEccccccccccccccc-----CCceEEecccchhHHHHHHHHHHHHHHhhccCCccEEEEeccceEecCc
Confidence 6788999987655443322222 1234333322 234466666677554 568999999999887654
No 207
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=84.28 E-value=7.4 Score=31.85 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=59.6
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCC-----CcEEEee-------CCCCcchH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGE-----DRILLRP-------RPKKLGLG 81 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~-----~~~~~~~-------~~~~~g~~ 81 (242)
++|..+....+...++++.+. .--+|+|+-.-..+...+.+.+ .+.. ..+.++. .+...|.+
T Consensus 23 llpv~g~~pli~~~l~~l~~~---gi~~i~iv~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~ 96 (361)
T TIGR02091 23 AVPFGGKYRIIDFPLSNCINS---GIRRIGVLTQYKSHSLNRHIQR---GWDFDGFIDGFVTLLPAQQRESGTDWYQGTA 96 (361)
T ss_pred cceecceeeEeeehhhhhhhc---CCceEEEEeccChHHHHHHHHh---ccCccCccCCCEEEeCCcccCCCCccccCcH
Confidence 344545435677788888664 2236777766443333333332 1110 1233321 11236878
Q ss_pred HHHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcE
Q 026146 82 TAYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASI 124 (242)
Q Consensus 82 ~a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 124 (242)
.+.-.++.... .+.++++.+|.+.+.+ +..+++.+.+.+.++
T Consensus 97 ~al~~a~~~~~~~~~~~~lv~~gD~l~~~~-l~~~l~~~~~~~~~~ 141 (361)
T TIGR02091 97 DAVYQNLDLIEDYDPEYVLILSGDHIYKMD-YEKMLDYHIESGADV 141 (361)
T ss_pred HHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHHHHcCCCE
Confidence 88888877764 5789999999876554 677777666555543
No 208
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=82.42 E-value=8.7 Score=29.84 Aligned_cols=106 Identities=16% Similarity=0.137 Sum_probs=60.5
Q ss_pred CCcEEEEEeCccc-----------------cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEE
Q 026146 8 KNKYSIIIPTYNE-----------------RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRIL 70 (242)
Q Consensus 8 ~~~isiiip~~n~-----------------~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~ 70 (242)
++.+++||++-.. ...+..+++.+.+.. ..-+|+||-+.. ..+.++.....++ ..+.
T Consensus 22 ~~~i~aIILAAG~gsRmg~~~pKqll~l~Gkpll~~tl~~~~~~~--~i~~IvVV~~~~---~~~~~~~~~~~~~-~~i~ 95 (252)
T PLN02728 22 EKSVSVILLAGGVGKRMGANMPKQYLPLLGQPIALYSLYTFARMP--EVKEIVVVCDPS---YRDVFEEAVENID-VPLK 95 (252)
T ss_pred cCceEEEEEcccccccCCCCCCcceeEECCeEHHHHHHHHHHhCC--CCCeEEEEeCHH---HHHHHHHHHHhcC-CceE
Confidence 3457777776432 233455666654421 123677765532 1233333333322 2344
Q ss_pred EeeCCCCcchHHHHHHHHhhcC--CCEEEEEeCCCC-CCCCChHHHHHHHHhcC
Q 026146 71 LRPRPKKLGLGTAYIHGLKHAS--GSFVVIMDADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 71 ~~~~~~~~g~~~a~n~g~~~a~--~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
++. +..+...+.-.|++... .++|++.|++-- ++++.+.++++.+.+.+
T Consensus 96 ~v~--gg~~r~~SV~~gl~~l~~~~~~VlihDaarP~vs~~~i~~li~~~~~~g 147 (252)
T PLN02728 96 FAL--PGKERQDSVFNGLQEVDANSELVCIHDSARPLVTSADIEKVLKDAAVHG 147 (252)
T ss_pred EcC--CCCchHHHHHHHHHhccCCCCEEEEecCcCCCCCHHHHHHHHHHHhhCC
Confidence 432 23345677888888753 577888887644 88999999999886644
No 209
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=82.02 E-value=14 Score=30.50 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=55.8
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC-CcchHHHHHHHHhhcCCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK-KLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~-~~g~~~a~n~g~~~a~~d~i~ 97 (242)
+....+..+++.+... .-+++|+.+.+. ...+.. ..+.++.... ..|+..+...|++++..++++
T Consensus 198 ~Gk~ll~~~l~~l~~~----~~~vvV~~~~~~---~~~~~~-------~~v~~i~d~~~~~Gpl~gi~~al~~~~~~~~l 263 (369)
T PRK14490 198 HESNQLVHTAALLRPH----CQEVFISCRAEQ---AEQYRS-------FGIPLITDSYLDIGPLGGLLSAQRHHPDAAWL 263 (369)
T ss_pred CCccHHHHHHHHHHhh----CCEEEEEeCCch---hhHHhh-------cCCcEEeCCCCCCCcHHHHHHHHHhCCCCcEE
Confidence 4456677778777643 125666655331 111111 1344555432 468888888999888888999
Q ss_pred EEeCCCC-CCCCChHHHHHHH
Q 026146 98 IMDADLS-HHPKYLPSFIKKQ 117 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~ 117 (242)
|+=+|.- ++++.++.++...
T Consensus 264 v~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 264 VVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred EEeCCcCCCCHHHHHHHHHhc
Confidence 9999977 7899999988764
No 210
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=81.83 E-value=20 Score=27.15 Aligned_cols=100 Identities=18% Similarity=0.224 Sum_probs=65.6
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIM 99 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~l 99 (242)
....|..+|+.+.+... -.++||. - |.+++.+.++.++.+++ +.+.+-++. ..-.=+-.+++.-.++.|+=+
T Consensus 27 ~~pmI~~~lervrks~~--~d~ivvA-T-S~~~~d~~l~~~~~~~G---~~vfrGs~~-dVL~Rf~~a~~a~~~~~VVRv 98 (241)
T COG1861 27 GEPMIEYQLERVRKSKD--LDKIVVA-T-SDKEEDDALEEVCRSHG---FYVFRGSEE-DVLQRFIIAIKAYSADVVVRV 98 (241)
T ss_pred CCchHHHHHHHHhcccc--ccceEEE-e-cCCcchhHHHHHHHHcC---eeEecCCHH-HHHHHHHHHHHhcCCCeEEEe
Confidence 34667888888876632 1244443 2 55566777888777664 555542211 122223344555568999999
Q ss_pred eCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 100 DADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 100 D~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
-+|+- ++|+.+...+..+.+.+.|.+.+
T Consensus 99 TGD~P~~dp~l~d~~v~~~l~~gaDY~s~ 127 (241)
T COG1861 99 TGDNPFLDPELVDAAVDRHLEKGADYVSN 127 (241)
T ss_pred eCCCCCCCHHHHHHHHHHHHhcCCccccc
Confidence 99998 78999999998887778777654
No 211
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=81.32 E-value=12 Score=31.26 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=62.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC--CCcEEEeeC---C------CCcchHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG--EDRILLRPR---P------KKLGLGT 82 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~--~~~~~~~~~---~------~~~g~~~ 82 (242)
.+|.-++...|...|++|.+. .--+|+|+-.-..+...+.+. ..+. .....++.. . ...|.+.
T Consensus 30 llPv~gk~plI~~~L~~l~~~---Gi~~i~iv~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~lGta~ 103 (407)
T PRK00844 30 AVPFGGSYRLIDFVLSNLVNS---GYLRIYVLTQYKSHSLDRHIS---QTWRLSGLLGNYITPVPAQQRLGKRWYLGSAD 103 (407)
T ss_pred ceeeCCcceEhHHHHHHHHHC---CCCEEEEEeccCHHHHHHHHH---hCcCccccCCCeEEECCcccCCCCCcccCCHH
Confidence 455556556788888888764 223677776643333333232 1111 111222221 1 1368888
Q ss_pred HHHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 83 AYIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 83 a~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
|+..+..... .++++++.+|.+.+ ..+..+++...+.+.++.+.
T Consensus 104 al~~a~~~i~~~~~~~~lv~~gD~v~~-~dl~~l~~~h~~~~~~~ti~ 150 (407)
T PRK00844 104 AIYQSLNLIEDEDPDYVVVFGADHVYR-MDPRQMVDFHIESGAGVTVA 150 (407)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCEEEc-CCHHHHHHHHHhcCCcEEEE
Confidence 8888877753 37899999998654 45677777776666665433
No 212
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=80.22 E-value=16 Score=24.90 Aligned_cols=91 Identities=16% Similarity=0.139 Sum_probs=50.4
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc--C
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--S 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--~ 92 (242)
|-.-++.+......+.+.... .+++++---||.+....+.......... ......-.++..|-..+...+++.+ +
T Consensus 5 InL~~~~~Rr~~~~~~~~~~~--~~~~~~~Avd~~~~~~~~~~~~~~~~~~-~~~~~~l~~gEiGC~lSH~~~w~~~~~~ 81 (128)
T cd06532 5 INLDRSTDRRERMEAQLAALG--LDFEFFDAVDGKDLSEEELAALYDALFL-PRYGRPLTPGEIGCFLSHYKLWQKIVES 81 (128)
T ss_pred EECCCCHHHHHHHHHHHHHcC--CCeEEEeccccccCCHHHHHHHhHHHhh-hhcCCCCChhhHHHHHHHHHHHHHHHHc
Confidence 333344455555555444332 4678887777776654443332211000 0000011234566667777777765 3
Q ss_pred C-CEEEEEeCCCCCCCC
Q 026146 93 G-SFVVIMDADLSHHPK 108 (242)
Q Consensus 93 ~-d~i~~lD~D~~~~~~ 108 (242)
+ ++++++.+|..+.++
T Consensus 82 ~~~~alIlEDDv~~~~~ 98 (128)
T cd06532 82 NLEYALILEDDAILDPD 98 (128)
T ss_pred CCCeEEEEccCcEECCC
Confidence 4 999999999998888
No 213
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=79.46 E-value=32 Score=29.49 Aligned_cols=97 Identities=9% Similarity=0.010 Sum_probs=52.1
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc---
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--- 91 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--- 91 (242)
+|..+....++.+++.+.... .-+++||-+.. -...+++....++.....++..+...|-+.|.-.+....
T Consensus 27 l~l~g~~~ll~~tl~~l~~~~---~~~iviv~~~~---~~~~~~~~l~~~~~~~~~~i~Ep~~~gTa~ai~~aa~~~~~~ 100 (468)
T TIGR01479 27 LALVGDLTMLQQTLKRLAGLP---CSSPLVICNEE---HRFIVAEQLREIGKLASNIILEPVGRNTAPAIALAALLAARR 100 (468)
T ss_pred eEcCCCCcHHHHHHHHHhcCC---CcCcEEecCHH---HHHHHHHHHHHcCCCcceEEecccccCchHHHHHHHHHHHHH
Confidence 344455677888999887652 22566664421 122233333333211234555555556555554444333
Q ss_pred --CCCEEEEEeCCCCCC-CCChHHHHHHH
Q 026146 92 --SGSFVVIMDADLSHH-PKYLPSFIKKQ 117 (242)
Q Consensus 92 --~~d~i~~lD~D~~~~-~~~l~~l~~~~ 117 (242)
..++++++-+|..+. +..+.++++..
T Consensus 101 ~~~~~~vlVl~~D~~i~~~~~f~~~l~~~ 129 (468)
T TIGR01479 101 NGEDPLLLVLAADHVITDEDAFQAAVKLA 129 (468)
T ss_pred HCCCcEEEEecCceeecCHHHHHHHHHHH
Confidence 256899999997754 45566666643
No 214
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=79.32 E-value=17 Score=30.68 Aligned_cols=109 Identities=16% Similarity=0.088 Sum_probs=62.7
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC--CCc-EEEeeCCC-------CcchHHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG--EDR-ILLRPRPK-------KLGLGTA 83 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~--~~~-~~~~~~~~-------~~g~~~a 83 (242)
.+|.-+....|...|+.|.+. .--+|+|+-.-..+...+.+.+.. ... ... +.++...+ ..|.+.|
T Consensus 28 Llpi~gk~plI~~~L~~l~~~---Gi~~vivv~~~~~~~i~~~l~~~~-~~~~~~~g~~~i~~~~~~~~~~~~~lGTa~a 103 (429)
T PRK02862 28 AVPLAGKYRLIDIPISNCINS---GINKIYVLTQFNSASLNRHISQTY-NFDGFSGGFVEVLAAQQTPENPSWFQGTADA 103 (429)
T ss_pred eeEECCeeEEeHHHHHHHHHC---CCCEEEEEecCCHHHHHHHHhcCc-CccccCCCEEEEeCCcccCCCCccccCcHHH
Confidence 556666557788888888764 223677776543323333332100 000 001 22221111 1588888
Q ss_pred HHHHHhhcC---CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 84 YIHGLKHAS---GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 84 ~n~g~~~a~---~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+..+..... .+.++++.+|.+.+ ..+..+++.+.+.+.++...
T Consensus 104 l~~a~~~l~~~~~~~~lVl~gD~l~~-~dl~~ll~~h~~~~a~~tl~ 149 (429)
T PRK02862 104 VRKYLWHFQEWDVDEYLILSGDQLYR-MDYRLFVQHHRETGADITLA 149 (429)
T ss_pred HHHHHHHHHhcCCCEEEEecCCEEEe-CCHHHHHHHHHHcCCCEEEE
Confidence 888887654 47899999998664 56788888776666665443
No 215
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=79.18 E-value=8.3 Score=29.56 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=50.7
Q ss_pred EEEEEeCcc-ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC--Ccc---hHHHH
Q 026146 11 YSIIIPTYN-ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK--KLG---LGTAY 84 (242)
Q Consensus 11 isiiip~~n-~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~--~~g---~~~a~ 84 (242)
|+-+|.+|+ ..+.+...+..+... .+.=.|-||-.+++...+.++++.+.++ ++.++.... ..| ...|.
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~---~~~f~iHiD~k~~~~~~~~~~~~~~~~~--nv~~v~~r~~v~WG~~S~v~A~ 75 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHP---DNDFYIHIDKKSPDYFYEEIKKLISCFP--NVHFVPKRVDVRWGGFSLVEAT 75 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--T---TSEEEEEE-TTS-HHHHHHHHHHHCT-T--TEEE-SS-----TTSHHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCC---CCEEEEEEcCCCChHHHHHHHHhcccCC--ceeecccccccccCCccHHHHH
Confidence 456777766 777777777766521 2333466777766656665666555554 676665221 222 34444
Q ss_pred HHHHhh-----cCCCEEEEEeCCCCCCCCChHHHHHHHHhc
Q 026146 85 IHGLKH-----ASGSFVVIMDADLSHHPKYLPSFIKKQLET 120 (242)
Q Consensus 85 n~g~~~-----a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 120 (242)
-.+++. .+.+|+++|-+++.+- .-.+.+.+.++..
T Consensus 76 l~ll~~al~~~~~~~y~~llSg~D~Pl-~s~~~i~~~l~~~ 115 (244)
T PF02485_consen 76 LNLLREALKRDGDWDYFILLSGQDYPL-KSNEEIHEFLESN 115 (244)
T ss_dssp HHHHHHHHHH-S---EEEEEETTEEES-S-HHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCCcEEEEcccccccc-cchHHHHHHHHhc
Confidence 444433 3579999988876622 2233444444443
No 216
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=78.28 E-value=5.3 Score=34.41 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=54.0
Q ss_pred EEEEeCCC-CCChHHHHHHHHHHhCCCcEEEeeCCCCcc-hHHHHHHHHhhc------CCCEEEEEeCCCCCCCCChHHH
Q 026146 42 IIVVDDGS-PDGTQEVVKQLQQLYGEDRILLRPRPKKLG-LGTAYIHGLKHA------SGSFVVIMDADLSHHPKYLPSF 113 (242)
Q Consensus 42 iivvd~~s-~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g-~~~a~n~g~~~a------~~d~i~~lD~D~~~~~~~l~~l 113 (242)
||+|.||. +++..+.+++++.. +.. .+|.| --+|+..|+... +.|-++++++-+.-+-.-++.+
T Consensus 1 iv~VsN~~l~~~~~~~L~~~~~~-----vi~---R~N~GyDfgayk~gl~~~g~~~L~~~d~lil~NDS~~GP~~~l~~~ 72 (498)
T PF05045_consen 1 IVFVSNSPLSEEDREKLKDLCDK-----VIQ---RENEGYDFGAYKDGLEHLGWERLKDYDELILMNDSCFGPLFPLSEM 72 (498)
T ss_pred CEEEECCCCCHHHHHHHHHHHHH-----hEE---eccCCcCHHHHHHHHHHcCchhhcCCCeEEEECCEEEeeCccHHHH
Confidence 46777766 55667777776432 222 23566 456777888663 4688999998877666669999
Q ss_pred HHHHHhcCCcEEEEE
Q 026146 114 IKKQLETGASIVTGT 128 (242)
Q Consensus 114 ~~~~~~~~~~~v~~~ 128 (242)
.+.+++.+.|+..-+
T Consensus 73 f~~~~~~~~DfwGlT 87 (498)
T PF05045_consen 73 FERMEARDVDFWGLT 87 (498)
T ss_pred HHHhccCCCeEEeec
Confidence 999887777766543
No 217
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=77.78 E-value=46 Score=28.84 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=54.5
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCC-CcEEEeeCCCCcch-HHHH
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGE-DRILLRPRPKKLGL-GTAY 84 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~-~~~~~~~~~~~~g~-~~a~ 84 (242)
...+|.|++=+|-. +.+++.++.+.+.. ..++++|--+.. +-.+.+++..++.+. .++.++.- +|.|. -+++
T Consensus 263 ~~~kiav~lHv~Y~-DLl~E~l~~l~~~p--~~~Dl~ITt~~~--~~~~~i~~~l~~~~~~~~~~v~vv-~NrGRDi~pf 336 (498)
T PF05045_consen 263 SKKKIAVHLHVFYP-DLLEEILDYLANIP--FPYDLFITTDSE--EKKEEIEEILAKRPGFKNAEVRVV-ENRGRDILPF 336 (498)
T ss_pred CCCcEEEEEEEEcH-hhHHHHHHHHHhCC--CCeEEEEECCch--hhHHHHHHHHHhccCCCceEEEEe-CCCCccHHHH
Confidence 45678888888774 56778888776553 467888874432 234555555533332 24444443 35552 2222
Q ss_pred H----HHHhhcCCCEEEEEeCCCCCC
Q 026146 85 I----HGLKHASGSFVVIMDADLSHH 106 (242)
Q Consensus 85 n----~g~~~a~~d~i~~lD~D~~~~ 106 (242)
- ..+...+.|+|+.+++--...
T Consensus 337 Lv~~~~~l~~~~YD~v~~~HtKKS~~ 362 (498)
T PF05045_consen 337 LVGLKDELLDSKYDYVCHLHTKKSPH 362 (498)
T ss_pred HHHHHHHhccCCccEEEEEEcccCcC
Confidence 2 222235689999999854433
No 218
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=76.25 E-value=26 Score=27.49 Aligned_cols=100 Identities=17% Similarity=0.055 Sum_probs=48.4
Q ss_pred EEEEeCcccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHH--HhCCCcEEEeeCCCCcch------HH
Q 026146 12 SIIIPTYNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ--LYGEDRILLRPRPKKLGL------GT 82 (242)
Q Consensus 12 siiip~~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~--~~~~~~~~~~~~~~~~g~------~~ 82 (242)
-|||++.+.. .....+|..|...-..-++||+..- .+|-+.+..+.+.. +.-..++.-+..+.-.+. -.
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~--~~dl~~~~~~~l~~~q~v~~vd~~~~~~~~~~~~~~~~~~~~ 80 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPG--DDDLSKEFCEKLLPDQDVWFVDASCVIDPDYLGKSFSKKGFQ 80 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCC--ccccCHHHHHHHhhhhhhheecceEEeeccccccccccCCch
Confidence 3788887732 2223566666553222567877763 22223333333322 000012222222222221 12
Q ss_pred HHHHHHhhcCCCEEEEEeCCCCCCCCChHHHH
Q 026146 83 AYIHGLKHASGSFVVIMDADLSHHPKYLPSFI 114 (242)
Q Consensus 83 a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~ 114 (242)
..-.|+-.++-+=|++||+|.++-.+ .+.+.
T Consensus 81 ~K~lA~l~ssFeevllLDaD~vpl~~-p~~lF 111 (271)
T PF11051_consen 81 NKWLALLFSSFEEVLLLDADNVPLVD-PEKLF 111 (271)
T ss_pred hhhhhhhhCCcceEEEEcCCcccccC-HHHHh
Confidence 22345556677889999999985433 44444
No 219
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=74.77 E-value=32 Score=25.44 Aligned_cols=78 Identities=4% Similarity=-0.008 Sum_probs=50.3
Q ss_pred cc-cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC--CCCcchHHHHHHHHhhcCCCE
Q 026146 19 NE-RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR--PKKLGLGTAYIHGLKHASGSF 95 (242)
Q Consensus 19 n~-~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~--~~~~g~~~a~n~g~~~a~~d~ 95 (242)
+. ...++.+++.+.... -+|+|+.+. +.. +. .+.++.. ....|.-.+...++.....++
T Consensus 32 ~g~~~ll~~~i~~l~~~~----~~vvvv~~~--~~~-----~~-------~~~~v~d~~~~~~gpl~gi~~~l~~~~~~~ 93 (196)
T PRK00560 32 GSYSSLLEYQYTRLLKLF----KKVYISTKD--KKF-----EF-------NAPFLLEKESDLFSPLFGIINAFLTLQTPE 93 (196)
T ss_pred CCCCcHHHHHHHHHHHhC----CEEEEEECc--hhc-----cc-------CCcEEecCCCCCCCcHHHHHHHHHhcCCCe
Confidence 55 667778888886541 256666553 110 01 1233332 234566677777887778899
Q ss_pred EEEEeCCCC-CCCCChHHHH
Q 026146 96 VVIMDADLS-HHPKYLPSFI 114 (242)
Q Consensus 96 i~~lD~D~~-~~~~~l~~l~ 114 (242)
++++=+|.. ++++.++.+.
T Consensus 94 vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 94 IFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred EEEEecCcCcCCHHHHHHHH
Confidence 999999987 6888888874
No 220
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=73.56 E-value=3.1 Score=37.61 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=100.9
Q ss_pred CcEEEEEeC--cccc-ccHHHHHHHHHhhhcCCCeEEEEEeCCCCC--C-hHHHHHHHHHHh-------CCCcEEEeeCC
Q 026146 9 NKYSIIIPT--YNER-LNIALIVYLIFKHLRDVDFEIIVVDDGSPD--G-TQEVVKQLQQLY-------GEDRILLRPRP 75 (242)
Q Consensus 9 ~~isiiip~--~n~~-~~l~~~l~sl~~~~~~~~~eiivvd~~s~d--~-t~~~l~~~~~~~-------~~~~~~~~~~~ 75 (242)
.+++-|+.+ |... +.-.+.++.|.+.. |...|-.+|...+. + ..+....+.+.. ....+.-++.+
T Consensus 190 ~KF~yVVs~Q~yg~~~~~~a~~i~~Lm~~~--P~LrVAYide~~~~~~~~~~~yYS~Lv~~~~~~~~~g~~~~~yri~Lp 267 (817)
T PF02364_consen 190 RKFTYVVSCQRYGKFKKEEAEDIEFLMRAY--PSLRVAYIDEVPDRNGGGEPEYYSVLVKGDCEIDENGKRQEIYRIKLP 267 (817)
T ss_pred cCCCEEEecchhcCCChHHHHHHHHHHHhC--CceEEEEEeeecccCCCCCceEEEEEecCCccccccCcccceEEEECC
Confidence 344555444 3322 33345556665543 67888888854421 1 111111111000 01123333444
Q ss_pred CCc----chHHHHHHHHhhcCCCEEEEEeC--CCCCCCC-ChHHHHHHHHhc-----------------CCcEEEEEEEe
Q 026146 76 KKL----GLGTAYIHGLKHASGSFVVIMDA--DLSHHPK-YLPSFIKKQLET-----------------GASIVTGTRYV 131 (242)
Q Consensus 76 ~~~----g~~~a~n~g~~~a~~d~i~~lD~--D~~~~~~-~l~~l~~~~~~~-----------------~~~~v~~~~~~ 131 (242)
+|. ||+.+-|.++-..+|+|+-.+|. |..+... -+.++++.+++. ....++|.+..
T Consensus 268 G~pilGeGK~eNQNhaiiF~rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~ 347 (817)
T PF02364_consen 268 GNPILGEGKPENQNHAIIFTRGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREH 347 (817)
T ss_pred CCCcCCCCCccccceeEEEEccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccce
Confidence 443 68999999999999999999886 6443322 244455556542 23345554433
Q ss_pred ecCC-ccCchhhHHHHHhHHHH-HHH------HHhCCCccccccchhhcchHHHHHhhhcccCCCcccchHHHHHHHHcC
Q 026146 132 RSGG-VHGWNLMRKLTSRGANV-LAQ------TLLWPGVSDLTGSFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRKG 203 (242)
Q Consensus 132 ~~~~-~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~g~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~g 203 (242)
--.+ .......-......+.. ..+ .....|.+++.....++.|-=+-+. .....+.||.--.+.+...|
T Consensus 348 IFs~~vg~L~~~aa~qE~~F~Tl~qR~la~p~~rlHYGHPD~~n~~f~~TRGGvSKA---sk~lhLsEDIfaG~n~~lRG 424 (817)
T PF02364_consen 348 IFSENVGSLGDFAAGQEQSFGTLFQRTLANPLVRLHYGHPDVFNRIFMTTRGGVSKA---SKGLHLSEDIFAGMNATLRG 424 (817)
T ss_pred EecCCcchHHHHhhhhhHHHHHHHHHHHhcchhhccCCCchhhhhhheeccCccchH---hhcccccHHHHHHHHHHhcC
Confidence 2111 10111111111111111 111 2244556665555545554333332 24567789999999999999
Q ss_pred CceEEeeeee
Q 026146 204 YHIEEVPITF 213 (242)
Q Consensus 204 ~~i~~~p~~~ 213 (242)
.+|.++....
T Consensus 425 G~i~h~ey~q 434 (817)
T PF02364_consen 425 GRIKHCEYIQ 434 (817)
T ss_pred Cceeehhhhh
Confidence 9999997543
No 221
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=71.18 E-value=20 Score=30.51 Aligned_cols=85 Identities=14% Similarity=0.055 Sum_probs=60.0
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCC
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASG 93 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~ 93 (242)
+|.+|.....+...|....++- .+|.++|||..+.-+-...++.+.+. +.++.|..-. |..+.+..
T Consensus 362 viltyg~s~vV~~ill~A~~~~--k~frVvVVDSRP~~EG~~~lr~Lv~~--GinctYv~I~-------a~syim~e--- 427 (556)
T KOG1467|consen 362 VLLTYGSSSVVNMILLEAKELG--KKFRVVVVDSRPNLEGRKLLRRLVDR--GINCTYVLIN-------AASYIMLE--- 427 (556)
T ss_pred EEEEecchHHHHHHHHHHHHhC--cceEEEEEeCCCCcchHHHHHHHHHc--CCCeEEEEeh-------hHHHHHHh---
Confidence 5778888888877666644432 68999999998888888899998776 4578887654 22233322
Q ss_pred CEEEEEeCCCCCCCCChHH
Q 026146 94 SFVVIMDADLSHHPKYLPS 112 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~ 112 (242)
--.+||-+..++..+++..
T Consensus 428 vtkvfLGahailsNG~vys 446 (556)
T KOG1467|consen 428 VTKVFLGAHAILSNGAVYS 446 (556)
T ss_pred cceeeechhhhhcCcchhh
Confidence 2256788888888887654
No 222
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=70.51 E-value=63 Score=27.08 Aligned_cols=164 Identities=12% Similarity=0.025 Sum_probs=84.1
Q ss_pred CeEEEEEeCCCC--CC-hHHHHHHHHHHhCCCcEEEeeCCCCc---c-h-HHHHHHHHhhcCCCEEEEEeCCCCCCCCCh
Q 026146 39 DFEIIVVDDGSP--DG-TQEVVKQLQQLYGEDRILLRPRPKKL---G-L-GTAYIHGLKHASGSFVVIMDADLSHHPKYL 110 (242)
Q Consensus 39 ~~eiivvd~~s~--d~-t~~~l~~~~~~~~~~~~~~~~~~~~~---g-~-~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l 110 (242)
.+.+.+|-.-+. +. ....+++=...|+ .+.+....+.+ . | -..+..+.+..+.+|++-.|+|..+..+-|
T Consensus 177 gv~vrFVIG~s~~~~~~ldr~Le~Ea~~yg--DIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L 254 (408)
T PLN03193 177 GIIIRFVIGHSATSGGILDRAIEAEDRKHG--DFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATL 254 (408)
T ss_pred cEEEEEEeecCCCcchHHHHHHHHHHHHhC--CEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHH
Confidence 356666666654 22 3333444445555 45555543332 2 2 233445555667899999999999998877
Q ss_pred HHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHHhhhc-ccCCCc
Q 026146 111 PSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDVISS-CVSKGY 189 (242)
Q Consensus 111 ~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~~~-~~~~~~ 189 (242)
...+.... ....+.+|.... ..- ...+ ....... ..+........-+....|+..++++++...+-.. .....|
T Consensus 255 ~~~L~~~~-~~~rlYiG~m~~-gPv-r~~~-~~ky~ep-e~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y 329 (408)
T PLN03193 255 GETLVRHR-KKPRVYIGCMKS-GPV-LSQK-GVRYHEP-EYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKY 329 (408)
T ss_pred HHHHHhcC-CCCCEEEEeccc-Ccc-ccCC-CCcCcCc-ccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhccc
Confidence 77664432 223466664432 110 0000 0000000 0000000011223456788889999999988322 112222
Q ss_pred -ccchHHHHHHHHcCCceEEeee
Q 026146 190 -VFQMEMIVRACRKGYHIEEVPI 211 (242)
Q Consensus 190 -~~d~~~~~~~~~~g~~i~~~p~ 211 (242)
.||.-+..-+ .|..+.++..
T Consensus 330 ~~EDV~vG~Wl--~~L~V~~vdd 350 (408)
T PLN03193 330 ANEDVSLGSWF--IGLDVEHIDD 350 (408)
T ss_pred CcchhhhhhHh--ccCCceeeec
Confidence 6776666555 5777766653
No 223
>PLN02893 Cellulose synthase-like protein
Probab=67.25 E-value=16 Score=33.06 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=43.1
Q ss_pred CCCCcEEEEEeCcc---ccccH-HHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 6 KNKNKYSIIIPTYN---ERLNI-ALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 6 ~~~~~isiiip~~n---~~~~l-~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
...|.|.|.|+|-+ |+... ..++=|+....++ ....++|-|||.+.-|.+.+.+.+
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa 158 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAA 158 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHH
Confidence 35799999999954 44333 5677788777776 678999999999998888777654
No 224
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=66.03 E-value=55 Score=24.68 Aligned_cols=37 Identities=27% Similarity=0.561 Sum_probs=27.1
Q ss_pred cCCCEEEEEeCCCC-CCCCC-hHHHHHHHHhcCCcEEEEEEEe
Q 026146 91 ASGSFVVIMDADLS-HHPKY-LPSFIKKQLETGASIVTGTRYV 131 (242)
Q Consensus 91 a~~d~i~~lD~D~~-~~~~~-l~~l~~~~~~~~~~~v~~~~~~ 131 (242)
...++|+|+|+|.- +.|+- +++++ +++.|++.-.+..
T Consensus 40 ~~~~~vlflDaDigVvNp~~~iEefi----d~~~Di~fydR~~ 78 (222)
T PF03314_consen 40 PEYDWVLFLDADIGVVNPNRRIEEFI----DEGYDIIFYDRFF 78 (222)
T ss_pred ccCCEEEEEcCCceeecCcccHHHhc----CCCCcEEEEeccc
Confidence 35689999999976 66664 44444 6789998876665
No 225
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=61.02 E-value=58 Score=26.51 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL 63 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~ 63 (242)
..++.+++-++|++++++-+++||.+...-.+ .++|+ |.|.-.+.+.++.+.
T Consensus 116 ~~~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~-tLlif---SHD~~~~eiN~~I~~ 167 (455)
T KOG2791|consen 116 KDRVVLVLQVHNRPQYLRVLVESLRKVKGISE-TLLIF---SHDGYFEEINRIIES 167 (455)
T ss_pred cceEEEEEEEcCcHHHHHHHHHHHHhccCccc-eEEEE---eccchHHHHHHHHhh
Confidence 34677888899999999999999987643233 23333 445555666666554
No 226
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=60.72 E-value=72 Score=24.20 Aligned_cols=114 Identities=18% Similarity=0.265 Sum_probs=63.6
Q ss_pred CcEEEEEeCcccc--------------ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC
Q 026146 9 NKYSIIIPTYNER--------------LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR 74 (242)
Q Consensus 9 ~~isiiip~~n~~--------------~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~ 74 (242)
++.-.|||++... +.+..+++..+.. .-++=|||+-.| .++++. +..++ ..+- +.+
T Consensus 2 ~~~iAiIpAR~gSKgI~~KNi~~~~gkpLi~~~I~aA~ns---~~fd~VviSsDs----~~Il~~-A~~yg-ak~~-~~R 71 (228)
T COG1083 2 MKNIAIIPARGGSKGIKNKNIRKFGGKPLIGYTIEAALNS---KLFDKVVISSDS----EEILEE-AKKYG-AKVF-LKR 71 (228)
T ss_pred cceEEEEeccCCCCcCCccchHHhCCcchHHHHHHHHhcC---CccceEEEcCCc----HHHHHH-HHHhC-cccc-ccC
Confidence 3566778887433 3444555555433 456667774432 334433 22222 2333 333
Q ss_pred CCCcchHHHH-----HHHHhhc--CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEee
Q 026146 75 PKKLGLGTAY-----IHGLKHA--SGSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVR 132 (242)
Q Consensus 75 ~~~~g~~~a~-----n~g~~~a--~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 132 (242)
+....-..+. -.+++.. ..+.++.+.+-.- ....-+++.++.+.+++.+-+++.....
T Consensus 72 p~~LA~D~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~sa~e~e 137 (228)
T COG1083 72 PKELASDRASTIDAALHALESFNIDEDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFSAVECE 137 (228)
T ss_pred ChhhccCchhHHHHHHHHHHHhccccCeeEEeccCccccchhHHHHHHHHHhcCCCcceEEEeecc
Confidence 3333322222 1222222 3687888888776 5677899999999888888877755543
No 227
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=59.99 E-value=97 Score=26.77 Aligned_cols=97 Identities=7% Similarity=0.015 Sum_probs=48.6
Q ss_pred EeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc--C
Q 026146 15 IPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA--S 92 (242)
Q Consensus 15 ip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a--~ 92 (242)
+|..+....++.+++.+.... .. +.+||-+. .-...+++-....+.....++-.+...+-+.|.-.|...+ +
T Consensus 32 l~l~~~~sllq~t~~r~~~~~--~~-~~iivt~~---~~~~~v~~ql~~~~~~~~~ii~EP~~rnTApaialaa~~~~~~ 105 (478)
T PRK15460 32 LCLKGDLTMLQTTICRLNGVE--CE-SPVVICNE---QHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRH 105 (478)
T ss_pred eECCCCCCHHHHHHHHHHhCC--CC-CcEEEeCH---HHHHHHHHHHHhcCCccccEEecCCCCChHHHHHHHHHHHHHh
Confidence 445555677888888876542 12 34455332 3333444333333211123334344444455544444433 1
Q ss_pred ----CCEEEEEeCCCCCCCC--ChHHHHHHH
Q 026146 93 ----GSFVVIMDADLSHHPK--YLPSFIKKQ 117 (242)
Q Consensus 93 ----~d~i~~lD~D~~~~~~--~l~~l~~~~ 117 (242)
...++++=+|-.+.+. |.+.+.+++
T Consensus 106 ~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~ 136 (478)
T PRK15460 106 SPESDPLMLVLAADHVIADEDAFRAAVRNAM 136 (478)
T ss_pred cCCCCCeEEEeccccccCCHHHHHHHHHHHH
Confidence 3589999999885543 444444443
No 228
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=59.89 E-value=97 Score=25.45 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=54.7
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee-CCCCcchHHHHHHHHhhcCCCEEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP-RPKKLGLGTAYIHGLKHASGSFVV 97 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~-~~~~~g~~~a~n~g~~~a~~d~i~ 97 (242)
+....++..++.+.... . +|+|+-+.... ... . ...+.++. .....|...++-.|++.+..++++
T Consensus 184 ~GkpLl~~~ie~l~~~~---~-~ViVv~~~~~~------~~~--~--~~~v~~I~D~~~~~GPlagI~aaL~~~~~~~~l 249 (346)
T PRK14500 184 QGQPHAQYLYDLLAKYC---E-QVFLSARPSQW------QGT--P--LENLPTLPDRGESVGPISGILTALQSYPGVNWL 249 (346)
T ss_pred CCccHHHHHHHHHHhhC---C-EEEEEeCchHh------hhc--c--ccCCeEEeCCCCCCChHHHHHHHHHhCCCCCEE
Confidence 34556666776665442 2 66676543210 000 0 01233433 333469999999999988766778
Q ss_pred EEeCCCC-CCCCChHHHHHHHH
Q 026146 98 IMDADLS-HHPKYLPSFIKKQL 118 (242)
Q Consensus 98 ~lD~D~~-~~~~~l~~l~~~~~ 118 (242)
++=.|.. ++++.+..+++...
T Consensus 250 Vl~cDmP~l~~~~l~~L~~~~~ 271 (346)
T PRK14500 250 VVACDLAYLNSETVEKLLAHYR 271 (346)
T ss_pred EEECCcCCCCHHHHHHHHHhhh
Confidence 9999988 78899999988764
No 229
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=59.85 E-value=24 Score=26.61 Aligned_cols=51 Identities=22% Similarity=0.218 Sum_probs=35.8
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcE
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRI 69 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~ 69 (242)
.|||+.+|++ . |+..++.. +.+.-.|+|=++.|.-+++++.+.++||..++
T Consensus 31 ~VIi~gR~e~-~----L~e~~~~~--p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNv 81 (245)
T COG3967 31 TVIICGRNEE-R----LAEAKAEN--PEIHTEVCDVADRDSRRELVEWLKKEYPNLNV 81 (245)
T ss_pred EEEEecCcHH-H----HHHHHhcC--cchheeeecccchhhHHHHHHHHHhhCCchhe
Confidence 5788887753 3 34443332 56667888888888889999999999984333
No 230
>PF13707 RloB: RloB-like protein
Probab=58.85 E-value=63 Score=23.40 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred CCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEE
Q 026146 93 GSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 93 ~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
....+++|-|.. ....-+.++++...+.+..+++.
T Consensus 61 d~v~~V~D~D~~~~~~~~~~~~~~~a~~~~i~l~~S 96 (183)
T PF13707_consen 61 DEVWCVFDRDQNDFEHEKLEEAIKKAKRNKINLAVS 96 (183)
T ss_pred CEEEEEEeCCCCcCcHHHHHHHHHhccccCeEEEEe
Confidence 466888899922 34445555555554444444443
No 231
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=58.32 E-value=18 Score=28.82 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=32.3
Q ss_pred CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCCcEEEEEE
Q 026146 92 SGSFVVIMDADLS-HHPKYLPSFIKKQLETGASIVTGTR 129 (242)
Q Consensus 92 ~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~ 129 (242)
..+|++++++|.. -++..+..++.++.+++.+++.-..
T Consensus 118 ~~~yivVvEddnT~~~~~~l~~~I~aM~~k~idilQLre 156 (325)
T PF03213_consen 118 EDKYIVVVEDDNTLRDITTLHPIIKAMKKKNIDILQLRE 156 (325)
T ss_pred CCCeEEEEeCCCcccccHHHHHHHHHHHHcCceEEEEeh
Confidence 3699999999987 5688999999999999999987533
No 232
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=58.15 E-value=76 Score=24.11 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=47.8
Q ss_pred EEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEE-eCCCCC-ChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHH
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVV-DDGSPD-GTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivv-d~~s~d-~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
|.+|+|..+.. +.......+.+......+++.++ +...+. .-.+.++++.+..+ ...++...........+..+.
T Consensus 1 I~vi~~~~~~~-~~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~--d~Iiv~~~~~~~~~~~l~~~~ 77 (257)
T PF13407_consen 1 IGVIVPSMDNP-FWQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGV--DGIIVSPVDPDSLAPFLEKAK 77 (257)
T ss_dssp EEEEESSSSSH-HHHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTE--SEEEEESSSTTTTHHHHHHHH
T ss_pred cEEEeCCCCCH-HHHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcC--CEEEecCCCHHHHHHHHHHHh
Confidence 57888888876 66666666665544456677775 555443 34455666655543 444444332222233333321
Q ss_pred hhcCCCEEEEEeCC
Q 026146 89 KHASGSFVVIMDAD 102 (242)
Q Consensus 89 ~~a~~d~i~~lD~D 102 (242)
+ ++=.|+++|.|
T Consensus 78 ~--~gIpvv~~d~~ 89 (257)
T PF13407_consen 78 A--AGIPVVTVDSD 89 (257)
T ss_dssp H--TTSEEEEESST
T ss_pred h--cCceEEEEecc
Confidence 1 24467778887
No 233
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=57.97 E-value=83 Score=24.10 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=18.3
Q ss_pred hhcCCCEEEEEeCCCCCCCCChHHHHH
Q 026146 89 KHASGSFVVIMDADLSHHPKYLPSFIK 115 (242)
Q Consensus 89 ~~a~~d~i~~lD~D~~~~~~~l~~l~~ 115 (242)
+....|-++++|+|.++-.+ +..+.+
T Consensus 86 ~l~~~drvlylD~D~~v~~~-i~~Lf~ 111 (240)
T cd02537 86 NLTEYDKVVFLDADTLVLRN-IDELFD 111 (240)
T ss_pred cccccceEEEEeCCeeEccC-HHHHhC
Confidence 33457899999999887654 455444
No 234
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=57.07 E-value=68 Score=22.81 Aligned_cols=77 Identities=21% Similarity=0.214 Sum_probs=52.5
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGL 88 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~ 88 (242)
+++.||+=.-...+..+...+.|.+. . -++|+-|| |...|.+.+.++.+......+.++.... | ++|.--|+
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~f-g-i~ye~~Vv---SAHRTPe~m~~ya~~a~~~g~~viIAgA--G-gAAHLPGm 74 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEF-G-VPYEVRVV---SAHRTPEKMFEYAEEAEERGVKVIIAGA--G-GAAHLPGM 74 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHc-C-CCeEEEEE---eccCCHHHHHHHHHHHHHCCCeEEEecC--c-chhhcchh
Confidence 37899998888888888888877654 2 58899999 5566777777777655444576665432 2 24555566
Q ss_pred hhcCC
Q 026146 89 KHASG 93 (242)
Q Consensus 89 ~~a~~ 93 (242)
-.|.+
T Consensus 75 vAa~T 79 (162)
T COG0041 75 VAAKT 79 (162)
T ss_pred hhhcC
Confidence 66654
No 235
>KOG3765 consensus Predicted glycosyltransferase [Carbohydrate transport and metabolism]
Probab=56.19 E-value=18 Score=30.08 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=35.3
Q ss_pred chHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 79 GLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 79 g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
-..-.+|.|-+.|+++|+++.|.|-++..++.+.+...+.+
T Consensus 178 P~Nl~RNvAr~ga~t~~~l~sD~dm~~S~gl~~~~~~~~~q 218 (386)
T KOG3765|consen 178 PFNLMRNVARKGANTDYMLMSDIDMVPSYGLADMLKKILNQ 218 (386)
T ss_pred chHHHHHHHHhhcCCCcEEEEeeeeeeccchHHHHHHHHHH
Confidence 46778999999999999999999999999988887666654
No 236
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=55.64 E-value=32 Score=21.47 Aligned_cols=52 Identities=21% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcch
Q 026146 24 IALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGL 80 (242)
Q Consensus 24 l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~ 80 (242)
..+++.++.+. ...++++.+..++.+..-+..+++.+. .++..+......|.
T Consensus 16 ~~~v~kai~~g----kaklViiA~D~~~~~~~~i~~~c~~~~-Vp~~~~~s~~eLG~ 67 (82)
T PRK13602 16 TKQTVKALKRG----SVKEVVVAEDADPRLTEKVEALANEKG-VPVSKVDSMKKLGK 67 (82)
T ss_pred HHHHHHHHHcC----CeeEEEEECCCCHHHHHHHHHHHHHcC-CCEEEECCHHHHHH
Confidence 34566666543 446777766666678888888888764 44554443333443
No 237
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=55.61 E-value=56 Score=21.34 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeC-CCCCChHHHHHHHHHHhCCC
Q 026146 24 IALIVYLIFKHLRDVDFEIIVVDD-GSPDGTQEVVKQLQQLYGED 67 (242)
Q Consensus 24 l~~~l~sl~~~~~~~~~eiivvd~-~s~d~t~~~l~~~~~~~~~~ 67 (242)
=...|+.+.+.. +...+|+|-| |..| .++..++++.+|+.
T Consensus 51 K~~~i~~i~~~f--P~~kfiLIGDsgq~D--peiY~~ia~~~P~~ 91 (100)
T PF09949_consen 51 KRDNIERILRDF--PERKFILIGDSGQHD--PEIYAEIARRFPGR 91 (100)
T ss_pred HHHHHHHHHHHC--CCCcEEEEeeCCCcC--HHHHHHHHHHCCCC
Confidence 345667776664 4556666644 4444 88888888888854
No 238
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=53.80 E-value=1.3e+02 Score=25.18 Aligned_cols=169 Identities=17% Similarity=0.199 Sum_probs=78.9
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC--CCcchHHHHHHHHhhcCCCEEEE
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP--KKLGLGTAYIHGLKHASGSFVVI 98 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~--~~~g~~~a~n~g~~~a~~d~i~~ 98 (242)
.+.+...++.+.+.. . +++|+-. .. . +.++++.... ...+.++..+ ...|.+.++... ....+++++
T Consensus 30 kPli~~~i~~l~~~~--~--~i~Ivv~-~~--~-~~i~~~~~~~-~~~v~~~~~~~~~~~gt~~al~~~--~~~~d~vlv 98 (430)
T PRK14359 30 KPMLFYILKEAFAIS--D--DVHVVLH-HQ--K-ERIKEAVLEY-FPGVIFHTQDLENYPGTGGALMGI--EPKHERVLI 98 (430)
T ss_pred ccHHHHHHHHHHHcC--C--cEEEEEC-CC--H-HHHHHHHHhc-CCceEEEEecCccCCCcHHHHhhc--ccCCCeEEE
Confidence 466788888887652 2 3444432 11 1 2233333322 1246665433 234666665442 224689999
Q ss_pred EeCCCC-CCCCChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhC-------CCccccccchh
Q 026146 99 MDADLS-HHPKYLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLW-------PGVSDLTGSFR 170 (242)
Q Consensus 99 lD~D~~-~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~g~~~ 170 (242)
+++|.. ..++.++.+. +.+.++++......+....+. .... . ..+...... .......++..
T Consensus 99 ~~gD~p~~~~~~l~~l~----~~~~~~~v~~~~~~~~~~~g~-v~~d--~---g~v~~i~e~~~~~~~~~~~~~~~~Giy 168 (430)
T PRK14359 99 LNGDMPLVEKDELEKLL----ENDADIVMSVFHLADPKGYGR-VVIE--N---GQVKKIVEQKDANEEELKIKSVNAGVY 168 (430)
T ss_pred EECCccCCCHHHHHHHH----hCCCCEEEEEEEcCCCccCcE-EEEc--C---CeEEEEEECCCCCcccccceEEEeEEE
Confidence 999984 4555555543 334554433222111110000 0000 0 000000000 01122355677
Q ss_pred hcchHHHHHhhhcccCC---CcccchHHHHHHHHcCCceEEee
Q 026146 171 LYKKSVLEDVISSCVSK---GYVFQMEMIVRACRKGYHIEEVP 210 (242)
Q Consensus 171 ~~rr~~~~~~~~~~~~~---~~~~d~~~~~~~~~~g~~i~~~p 210 (242)
+++++.+.++....... ...+-.+...++.+.|.++..+.
T Consensus 169 if~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~ 211 (430)
T PRK14359 169 LFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVF 211 (430)
T ss_pred EEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEE
Confidence 89999998763321111 11112356667788888877664
No 239
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=53.49 E-value=1.7 Score=33.90 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=49.2
Q ss_pred CeEEEEEeCCCCCC-hHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEE---EEeCCCCCCCCChHHHH
Q 026146 39 DFEIIVVDDGSPDG-TQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVV---IMDADLSHHPKYLPSFI 114 (242)
Q Consensus 39 ~~eiivvd~~s~d~-t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~---~lD~D~~~~~~~l~~l~ 114 (242)
..|+.+-|+|+.+. +.+-+..-.++. ...+.+-.-++..+.+.++.+++...++.|.. |-+.+.+++++..+...
T Consensus 41 e~ei~~~d~g~~k~~~lp~~~d~~~~~-~lsVIVpaynE~~ri~~mldeav~~le~ry~~~~~F~~eiiVvddgs~d~T~ 119 (323)
T KOG2977|consen 41 ETEITLDDPGSIKSRTLPNIRDSPEKM-YLSVIVPAYNEEGRIGAMLDEAVDYLEKRYLSDKSFTYEIIVVDDGSTDSTV 119 (323)
T ss_pred ceEEEEcCCCCccceeCcccccChhhc-eeEEEEecCCcccchHHHHHHHHHHHHHHhccCCCCceeEEEeCCCCchhHH
Confidence 34566666677553 333333221221 23456656667778999999999998777666 77777777777776665
Q ss_pred HHH
Q 026146 115 KKQ 117 (242)
Q Consensus 115 ~~~ 117 (242)
+..
T Consensus 120 ~~a 122 (323)
T KOG2977|consen 120 EVA 122 (323)
T ss_pred HHH
Confidence 543
No 240
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=52.22 E-value=78 Score=27.22 Aligned_cols=68 Identities=12% Similarity=-0.055 Sum_probs=42.5
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhc
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHA 91 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a 91 (242)
..+.++|.+|.++.......++|....+..+..+++.++.+.+. ....+.... .......+...++..
T Consensus 53 ~Fl~esL~~L~~~L~~~g~~L~v~~g~~~g~~~~vl~~l~~~~~-i~~v~~~~~-~~~~~~~rd~~v~~~ 120 (472)
T PRK10674 53 AFINAQLNALQIALAEKGIPLLFHEVDDFAASVEWLKQFCQQHQ-VTHLFYNYQ-YEVNERQRDAAVERA 120 (472)
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCcCCHHHHHHHHHHHcC-CCEEEEecc-cCHHHHHHHHHHHHH
Confidence 45678888888887655678888876555677888888888764 233333222 223344555555543
No 241
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=52.00 E-value=43 Score=27.54 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=55.1
Q ss_pred EEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC--CCc-------EEEeeCCCCc--chHH
Q 026146 14 IIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG--EDR-------ILLRPRPKKL--GLGT 82 (242)
Q Consensus 14 iip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~--~~~-------~~~~~~~~~~--g~~~ 82 (242)
.+|.-|..+.|...++.|.+. .--+|+|+-+--.+ +.++++..... +.. +.+...+... |-+.
T Consensus 27 LlpV~gk~PlIe~~l~~L~~~---Gi~~I~iv~~~~~~---~~I~~~l~~~~~~~~~~~~~~~~~~~~~e~~~l~tg~~~ 100 (369)
T TIGR02092 27 SLPFGGRYRLIDFPLSNMVNA---GIRNVFIFFKNKER---QSLFDHLGSGREWDLHRKRDGLFVFPYNDRDDLSEGGKR 100 (369)
T ss_pred ccccCCeeeEEEEEhhhhhcc---CCCEEEEEeCCCcH---HHHHHHHhCCCCCCcccccCcEEEEeccCCCCcccChHH
Confidence 345555435677778877665 22367777664322 12333332100 011 1122223232 3333
Q ss_pred HHHHHHhhc---CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEE
Q 026146 83 AYIHGLKHA---SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 83 a~n~g~~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 125 (242)
+...+.+.. ..+.++++.+|.+.+. .+..+++...+.+.++.
T Consensus 101 a~~~a~~~l~~~~~~~~lvlnGD~l~~~-dl~~ll~~h~~~~a~~t 145 (369)
T TIGR02092 101 YFSQNLEFLKRSTSEYTVVLNSHMVCNI-DLKAVLKYHEETGKDIT 145 (369)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCEEEec-CHHHHHHHHHHcCCCEE
Confidence 455555544 2578999999986654 46677777666566653
No 242
>PLN00176 galactinol synthase
Probab=51.06 E-value=1e+02 Score=25.16 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHH
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIK 115 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~ 115 (242)
.++..+.+-+++||+|.++..+ +..|..
T Consensus 107 iw~l~~ydkvlyLDaD~lv~~n-id~Lf~ 134 (333)
T PLN00176 107 IWEFVEYSKMIYLDGDIQVFEN-IDHLFD 134 (333)
T ss_pred hccccccceEEEecCCEEeecC-hHHHhc
Confidence 4444568899999999876543 444443
No 243
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=50.43 E-value=60 Score=30.73 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=43.3
Q ss_pred CCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 7 NKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 7 ~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
..|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 285 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 344 (1044)
T PLN02915 285 RLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETA 344 (1044)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHH
Confidence 4799999999976 3333 35788888888777 678999999999998888777544
No 244
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=49.95 E-value=92 Score=22.20 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=21.1
Q ss_pred CCCEEEEEeCCCC-CCCCChHHHHHHHHhcCC
Q 026146 92 SGSFVVIMDADLS-HHPKYLPSFIKKQLETGA 122 (242)
Q Consensus 92 ~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~~ 122 (242)
.+++++.||.... ++..-+.+.+......+.
T Consensus 66 ~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~ 97 (155)
T PF02590_consen 66 PNDYVILLDERGKQLSSEEFAKKLERWMNQGK 97 (155)
T ss_dssp TTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCccCChHHHHHHHHHHHhcCC
Confidence 5799999999877 777777777777665443
No 245
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=49.74 E-value=39 Score=21.13 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=30.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcc
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLG 79 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g 79 (242)
..++.++.+. ...++++....++.+.+-+..+++.+. .++.+.......|
T Consensus 14 ~~vlkaIk~g----kakLViiA~Da~~~~~k~i~~~c~~~~-Vpv~~~~t~~eLG 63 (82)
T PRK13601 14 KQTLKAITNC----NVLQVYIAKDAEEHVTKKIKELCEEKS-IKIVYIDTMKELG 63 (82)
T ss_pred HHHHHHHHcC----CeeEEEEeCCCCHHHHHHHHHHHHhCC-CCEEEeCCHHHHH
Confidence 4456666543 446666666666788888888887764 3444433333333
No 246
>PRK06683 hypothetical protein; Provisional
Probab=48.71 E-value=43 Score=20.90 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=31.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcch
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGL 80 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~ 80 (242)
..++.++.+. ...++++....++.+.+-+.++++.+. .++.........|.
T Consensus 17 ~~v~kaik~g----kaklViiA~Da~~~~~~~i~~~~~~~~-Vpv~~~~t~~eLG~ 67 (82)
T PRK06683 17 KRTLEAIKNG----IVKEVVIAEDADMRLTHVIIRTALQHN-IPITKVESVRKLGK 67 (82)
T ss_pred HHHHHHHHcC----CeeEEEEECCCCHHHHHHHHHHHHhcC-CCEEEECCHHHHHH
Confidence 4566666543 456777777777778888888877764 34544444433443
No 247
>COG2452 Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair]
Probab=48.70 E-value=66 Score=23.73 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=32.0
Q ss_pred CCCcEEEEEeCcccc-ccH-HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHH
Q 026146 7 NKNKYSIIIPTYNER-LNI-ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 7 ~~~~isiiip~~n~~-~~l-~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
..+.++.++.+|... ..+ -+.++.+.+. ...||++++.+-.+. .+.++++.
T Consensus 111 ~~~~V~rVvV~ykDRL~RFGfe~le~~~~a---~~~eivvv~~~e~~~-eELveDli 163 (193)
T COG2452 111 EGNSVRRVVVSYKDRLNRFGFELVEAVCKA---HNVEIVVVNQEDKDS-EELVEDLV 163 (193)
T ss_pred cCCceeEEEEEccchHhHHhHHHHHHHHHh---cCcEEEEecCCCCCH-HHHHHHHH
Confidence 346899999999743 223 2344444433 577999997765443 66666654
No 248
>PLN02195 cellulose synthase A
Probab=48.45 E-value=49 Score=31.03 Aligned_cols=56 Identities=18% Similarity=0.067 Sum_probs=43.6
Q ss_pred CCCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 6 KNKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 6 ~~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
...|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 309 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETA 309 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHH
Confidence 45799999999976 3333 35788888888777 678999999999988887777544
No 249
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=47.73 E-value=28 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=30.5
Q ss_pred CCEEEEEeCCCCC-CCCChHHHHHHHHhcCCcEEEEE
Q 026146 93 GSFVVIMDADLSH-HPKYLPSFIKKQLETGASIVTGT 128 (242)
Q Consensus 93 ~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~~~~v~~~ 128 (242)
.+|++++++|..+ ++..+..+++.+.+++.+++.-.
T Consensus 117 ~~yivVlEDDnTi~~~~~~~~~I~~M~~n~idilQLr 153 (323)
T PHA02688 117 DEYIVVVEDDNTLRDITTLHPIIKAMKEKNIDILQLR 153 (323)
T ss_pred CCeEEEEcCCCcccccHHHHHHHHHHHhcCeEEEEee
Confidence 6999999999885 57778888999988899988763
No 250
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=47.61 E-value=1.1e+02 Score=22.19 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=17.4
Q ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcE
Q 026146 38 VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRI 69 (242)
Q Consensus 38 ~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~ 69 (242)
....|.++ .++.+...+..+.+.+.+|+.++
T Consensus 47 ~~~~ifll-G~~~~~~~~~~~~l~~~yP~l~i 77 (172)
T PF03808_consen 47 RGKRIFLL-GGSEEVLEKAAANLRRRYPGLRI 77 (172)
T ss_pred cCCeEEEE-eCCHHHHHHHHHHHHHHCCCeEE
Confidence 34577777 33444445555567777774333
No 251
>PLN02436 cellulose synthase A
Probab=47.54 E-value=57 Score=30.98 Aligned_cols=56 Identities=20% Similarity=0.108 Sum_probs=43.8
Q ss_pred CCCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 6 KNKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 6 ~~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
...|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 422 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETS 422 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHH
Confidence 35799999999976 3333 35788888888777 678999999999988888777644
No 252
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=47.41 E-value=1e+02 Score=22.02 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=53.0
Q ss_pred cEEEEEeCccccccHHHHHHHHHhhhcC-CCeEEEEEeCCCCCChH--HH-HHHHHHHhCCCcEEEeeCCCCcchHHHHH
Q 026146 10 KYSIIIPTYNERLNIALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQ--EV-VKQLQQLYGEDRILLRPRPKKLGLGTAYI 85 (242)
Q Consensus 10 ~isiiip~~n~~~~l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~--~~-l~~~~~~~~~~~~~~~~~~~~~g~~~a~n 85 (242)
++.|+.+-......+.+.++...+.... ..++++.+-+....... +. .++- +...-
T Consensus 2 ki~I~~vGk~k~~~~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E--------------------~~~il 61 (157)
T PRK00103 2 KITIIAVGKLKPKWLKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKE--------------------GERIL 61 (157)
T ss_pred eEEEEEEeccCcHHHHHHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHH--------------------HHHHH
Confidence 5667777666666666666665555443 35677766554322111 00 0100 00000
Q ss_pred HHHhhcCCCEEEEEeCCCC-CCCCChHHHHHHHHhcC---CcEEEEEE
Q 026146 86 HGLKHASGSFVVIMDADLS-HHPKYLPSFIKKQLETG---ASIVTGTR 129 (242)
Q Consensus 86 ~g~~~a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~---~~~v~~~~ 129 (242)
-....+++++.||.... ++..-+.++++.....+ ...++|..
T Consensus 62 --~~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa 107 (157)
T PRK00103 62 --AALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGA 107 (157)
T ss_pred --hhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCc
Confidence 01124789999999887 77777777777665433 34445543
No 253
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=44.96 E-value=1.3e+02 Score=22.34 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=23.6
Q ss_pred CCCEEEEEeCCCCCCCCChHHHHHHHHh
Q 026146 92 SGSFVVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
.++-++|+-++..+.++|++...+.+++
T Consensus 157 ~~~~f~~vASE~~i~~ewi~~a~e~~~e 184 (188)
T PF09886_consen 157 EGNSFAFVASEETIKDEWIEEAKEMIEE 184 (188)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999887776653
No 254
>PLN02189 cellulose synthase
Probab=44.61 E-value=64 Score=30.57 Aligned_cols=55 Identities=22% Similarity=0.108 Sum_probs=42.9
Q ss_pred CCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 7 NKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 7 ~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
..|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 329 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 388 (1040)
T PLN02189 329 MLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETA 388 (1040)
T ss_pred cCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHH
Confidence 4799999999976 3333 35788888888777 678999999999988887777544
No 255
>PLN02400 cellulose synthase
Probab=44.51 E-value=60 Score=30.90 Aligned_cols=56 Identities=21% Similarity=0.108 Sum_probs=43.1
Q ss_pred CCCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 6 KNKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 6 ~~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
...|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa 413 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETA 413 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHH
Confidence 34799999999976 3333 35788888888777 678999999999988877776543
No 256
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=43.11 E-value=49 Score=21.45 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG 65 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~ 65 (242)
..++.++.+. ...++++.+..++++.+-+..++..+.
T Consensus 22 ~~v~kai~~g----kaklViiA~D~~~~~~~~i~~~c~~~~ 58 (99)
T PRK01018 22 KRTIKAIKLG----KAKLVIVASNCPKDIKEDIEYYAKLSG 58 (99)
T ss_pred HHHHHHHHcC----CceEEEEeCCCCHHHHHHHHHHHHHcC
Confidence 4566666544 345666666677788888988888764
No 257
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=42.89 E-value=63 Score=30.74 Aligned_cols=56 Identities=21% Similarity=0.110 Sum_probs=43.4
Q ss_pred CCCCcEEEEEeCcc---cccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 6 KNKNKYSIIIPTYN---ERLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 6 ~~~~~isiiip~~n---~~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
...|.|.|.|+|-+ |+.. +..++=|+++..++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa 406 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETS 406 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHH
Confidence 34799999999976 3333 35788888888777 678999999999988887777544
No 258
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=41.92 E-value=85 Score=19.52 Aligned_cols=72 Identities=14% Similarity=0.103 Sum_probs=39.4
Q ss_pred HHHHHHhhhc-CCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCC
Q 026146 27 IVYLIFKHLR-DVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLS 104 (242)
Q Consensus 27 ~l~sl~~~~~-~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~ 104 (242)
.|..+.++.. ...+++|.|.- |++.+..+++.+..+.....+.... +........+....-+.++++|.|..
T Consensus 22 ~l~~l~~~~~~~~~v~~v~Vs~---d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 22 KLKELYKKYKKKDDVEFVFVSL---DEDEEEWKKFLKKNNFPWYNVPFDD---DNNSELLKKYGINGIPTLVLLDPDGK 94 (95)
T ss_dssp HHHHHHHHHTTTTTEEEEEEE----SSSHHHHHHHHHTCTTSSEEEETTT---HHHHHHHHHTT-TSSSEEEEEETTSB
T ss_pred HHHHHHHHhCCCCCEEEEEEEe---CCCHHHHHHHHHhcCCCceEEeeCc---chHHHHHHHCCCCcCCEEEEECCCCC
Confidence 3444444433 25899999966 3455566666665522233333221 23344445555556799999998853
No 259
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane]
Probab=41.68 E-value=1.9e+02 Score=23.54 Aligned_cols=105 Identities=12% Similarity=0.169 Sum_probs=63.2
Q ss_pred EEEEEeC-ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee--CC---------CCc
Q 026146 11 YSIIIPT-YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP--RP---------KKL 78 (242)
Q Consensus 11 isiiip~-~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~--~~---------~~~ 78 (242)
+.|+..+ .|=...+.-++.|++.......+.+.++++|=+++-...+++..+.+.. .+.... .+ .+.
T Consensus 3 ~~Iv~a~D~nY~~~~gvsI~SiL~~n~~~~~~fhil~~~i~~e~~~~l~~~~~~f~~-~i~~~~id~~~~~~~~~~~~~~ 81 (325)
T COG1442 3 IPIAFAFDKNYLIPAGVSIYSLLEHNRKIFYKFHILVDGLNEEDKKKLNETAEPFKS-FIVLEVIDIEPFLDYPPFTKRF 81 (325)
T ss_pred ccEEEEcccccchhHHHHHHHHHHhCccccEEEEEEecCCCHHHHHHHHHHHHhhcc-ceeeEEEechhhhcccccccch
Confidence 3444444 2344556778888887765447899999999888888888888877652 222222 11 111
Q ss_pred c-hHHHHHHHHhhc-CCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 79 G-LGTAYIHGLKHA-SGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 79 g-~~~a~n~g~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
. ...+|-...+.- +.|=++.+|+|.++..+ ++++....
T Consensus 82 s~~v~~R~fiadlf~~~dK~lylD~Dvi~~g~-l~~lf~~~ 121 (325)
T COG1442 82 SKMVLVRYFLADLFPQYDKMLYLDVDVIFCGD-LSELFFID 121 (325)
T ss_pred HHHHHHHHHHHHhccccCeEEEEecCEEEcCc-HHHHHhcC
Confidence 1 122232333333 35999999999877644 55555443
No 260
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=41.19 E-value=1.9e+02 Score=23.32 Aligned_cols=105 Identities=5% Similarity=-0.042 Sum_probs=57.6
Q ss_pred EEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCC-CCCChHHHHHHHHHHhCC-C--cEEEeeCCCCc--c-----
Q 026146 11 YSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDG-SPDGTQEVVKQLQQLYGE-D--RILLRPRPKKL--G----- 79 (242)
Q Consensus 11 isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~-s~d~t~~~l~~~~~~~~~-~--~~~~~~~~~~~--g----- 79 (242)
++|+.+-.+ .+.+.-+|.|+..... .++++.|+.|. ..+...+.++++...+.. . .+..+..+... +
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~~n~-~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIVFSQ-KPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHHhCC-CCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 566666655 4566667777655442 57888888776 555566667777444321 1 23333322110 1
Q ss_pred --hHHHHHHHHhhc-CCCEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 80 --LGTAYIHGLKHA-SGSFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 80 --~~~a~n~g~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
.+..|-..-+.- +-|-++.||+|.++. +-++++.+.+.
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~~-~dI~eL~~~~~ 121 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILFL-RPVEEIWSFLK 121 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceeec-CCHHHHHHHHh
Confidence 111111121112 358999999997754 45677777654
No 261
>PLN02248 cellulose synthase-like protein
Probab=40.92 E-value=73 Score=30.46 Aligned_cols=55 Identities=15% Similarity=0.074 Sum_probs=43.0
Q ss_pred CCCcEEEEEeCccc---ccc-HHHHHHHHHhhhcC-CCeEEEEEeCCCCCChHHHHHHHH
Q 026146 7 NKNKYSIIIPTYNE---RLN-IALIVYLIFKHLRD-VDFEIIVVDDGSPDGTQEVVKQLQ 61 (242)
Q Consensus 7 ~~~~isiiip~~n~---~~~-l~~~l~sl~~~~~~-~~~eiivvd~~s~d~t~~~l~~~~ 61 (242)
..|.|.|.|+|-+. +.. ...++=|++...++ ..+.++|-|||.+.-|.+.+.+.+
T Consensus 365 ~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~EAa 424 (1135)
T PLN02248 365 DLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAEAA 424 (1135)
T ss_pred cCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHHHH
Confidence 47999999999763 332 35788888888777 678999999999988887777644
No 262
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.85 E-value=1.5e+02 Score=22.11 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=8.4
Q ss_pred cccccHHHHHHHHHh
Q 026146 19 NERLNIALIVYLIFK 33 (242)
Q Consensus 19 n~~~~l~~~l~sl~~ 33 (242)
++..+++..++++..
T Consensus 9 G~GSNlqaiida~~~ 23 (200)
T COG0299 9 GNGSNLQAIIDAIKG 23 (200)
T ss_pred CCcccHHHHHHHHhc
Confidence 444566666666653
No 263
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=40.83 E-value=2.2e+02 Score=23.88 Aligned_cols=34 Identities=12% Similarity=0.212 Sum_probs=24.0
Q ss_pred chhhcchHHHHHhhhcccCCCcccchHHHHHHHHc
Q 026146 168 SFRLYKKSVLEDVISSCVSKGYVFQMEMIVRACRK 202 (242)
Q Consensus 168 ~~~~~rr~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 202 (242)
+...++.++++.+...... .|..|+..+.+.++.
T Consensus 202 a~v~~S~~a~e~~~~~~~~-~~ylDL~~~~~~~~~ 235 (383)
T COG0075 202 AFVAVSERALEAIEERKHP-SFYLDLKKWLKYMEK 235 (383)
T ss_pred ceeEECHHHHHHHhcCCCC-ceeecHHHHHHHHhh
Confidence 3346899999998543333 577788888887765
No 264
>PRK06455 riboflavin synthase; Provisional
Probab=40.41 E-value=56 Score=23.27 Aligned_cols=27 Identities=15% Similarity=-0.105 Sum_probs=22.5
Q ss_pred CCcEEEEEeCccccccHHHHHHHHHhh
Q 026146 8 KNKYSIIIPTYNERLNIALIVYLIFKH 34 (242)
Q Consensus 8 ~~~isiiip~~n~~~~l~~~l~sl~~~ 34 (242)
+++|.|+..+||+...+..+++.|.+.
T Consensus 1 ~~kigIV~s~fn~~~L~~gAi~~L~~~ 27 (155)
T PRK06455 1 MMKIGIADTTFARVDMGSAAIDELRKL 27 (155)
T ss_pred CcEEEEEEEecchHHHHHHHHHHHHhc
Confidence 358999999999987778888888774
No 265
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=40.33 E-value=1.3e+02 Score=21.17 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=38.0
Q ss_pred CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHH
Q 026146 39 DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIK 115 (242)
Q Consensus 39 ~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~ 115 (242)
.+++|-|+.. .+.+.++++.+..+- ....+.... .........+....-+..+++|.|..+-.......++
T Consensus 65 ~~~vV~Vs~D---~~~~~~~~f~~~~~~-~~~~~p~~~--~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~ 135 (146)
T cd03008 65 QLALVYVSMD---QSEQQQESFLKDMPK-KWLFLPFED--EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEIL 135 (146)
T ss_pred CEEEEEEECC---CCHHHHHHHHHHCCC-Cceeecccc--hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHH
Confidence 5899999643 344556666666541 221221111 1122233333334569999999998855554444443
No 266
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=40.19 E-value=2e+02 Score=23.37 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCC-CCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC----CC
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGS-PDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS----GS 94 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~----~d 94 (242)
....++.++..+.... ..-+++||.|.- ...+.+.+.++-...+ .. ++-.+..+.-+.|.-.|...+. ..
T Consensus 33 ~~Sllq~T~~R~~~l~--~~~~~~vVtne~~~f~v~eql~e~~~~~~-~~--illEP~gRnTApAIA~aa~~~~~~~~d~ 107 (333)
T COG0836 33 DLSLLQQTVKRLAFLG--DIEEPLVVTNEKYRFIVKEQLPEIDIENA-AG--IILEPEGRNTAPAIALAALSATAEGGDA 107 (333)
T ss_pred CCcHHHHHHHHHhhcC--CccCeEEEeCHHHHHHHHHHHhhhhhccc-cc--eEeccCCCCcHHHHHHHHHHHHHhCCCc
Confidence 4566788888887643 234788887642 1223333333212211 12 3333333344555555555543 24
Q ss_pred EEEEEeCCCCCC-CCChHHHHH
Q 026146 95 FVVIMDADLSHH-PKYLPSFIK 115 (242)
Q Consensus 95 ~i~~lD~D~~~~-~~~l~~l~~ 115 (242)
.++++=+|-.+. ...+.+.++
T Consensus 108 ~~lVlpsDH~I~d~~af~~av~ 129 (333)
T COG0836 108 LVLVLPSDHVIADEEAFLNAVK 129 (333)
T ss_pred EEEEecCcceeccHHHHHHHHH
Confidence 799999998854 434444443
No 267
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=39.24 E-value=67 Score=20.51 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP 75 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~ 75 (242)
..+.+.+.+..+.+. .++-||++++.-.+.-.+.+.++..+...+-+..+...
T Consensus 26 ~~ee~~~~l~~l~~~---~~~gIIii~e~~~~~~~~~l~~~~~~~~~P~iv~IP~~ 78 (95)
T PF01990_consen 26 DPEEAEEALKELLKD---EDVGIIIITEDLAEKIRDELDEYREESSLPLIVEIPSK 78 (95)
T ss_dssp SHHHHHHHHHHHHHH---TTEEEEEEEHHHHTTHHHHHHHHHHTSSSSEEEEESTT
T ss_pred CHHHHHHHHHHHhcC---CCccEEEeeHHHHHHHHHHHHHHHhccCCceEEEcCCC
Confidence 456677777777655 57899999988777777888877554433445555433
No 268
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=37.57 E-value=2.4e+02 Score=23.39 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=5.1
Q ss_pred CCEEEEEeCCC
Q 026146 93 GSFVVIMDADL 103 (242)
Q Consensus 93 ~d~i~~lD~D~ 103 (242)
.|.|+=+-+-.
T Consensus 84 ~D~IIaiGGGs 94 (376)
T cd08193 84 ADGVIGFGGGS 94 (376)
T ss_pred CCEEEEeCCch
Confidence 35555444443
No 269
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=37.52 E-value=75 Score=24.98 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=17.9
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHH
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ 62 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~ 62 (242)
|.....+..+|....++- ..++|+|++..+..+....++++.+
T Consensus 114 ~~~S~~v~~~l~~a~~~~--~~~~V~v~es~P~~eG~~~a~~L~~ 156 (282)
T PF01008_consen 114 HGYSSTVERFLLSAKKKG--KKFRVIVLESRPYNEGRLMAKELAE 156 (282)
T ss_dssp ES--SHHHHHHHHHHHTT--EEEEEEEE--TTTTHHHTHHHHHHH
T ss_pred eCCchHHHHHHHHHHHcC--CeEEEEEccCCcchhhhhHHHHhhh
Confidence 333344555555543321 3456666654444344444444443
No 270
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=37.00 E-value=1.9e+02 Score=22.04 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=56.3
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC--CCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS--GSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~--~d~i 96 (242)
+....+..+++.+.+.. .--+|+||-... -.+.++++... ..+.++.-. .....+...|++... .|+|
T Consensus 26 ~Gkpvl~~tl~~f~~~~--~i~~Ivvv~~~~---~~~~~~~~~~~---~~v~iv~GG--~tR~~SV~ngL~~l~~~~d~V 95 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLASP--EIDEIVVVVPPE---DIDYVEELLSK---KKVKIVEGG--ATRQESVYNGLKALAEDCDIV 95 (221)
T ss_dssp TTEEHHHHHHHHHHTTT--TESEEEEEESGG---GHHHHHHHHHH---TTEEEEE----SSHHHHHHHHHHCHHCTSSEE
T ss_pred CCeEeHHHHHHHHhcCC--CCCeEEEEecch---hHHHHHHhhcC---CCEEEecCC--hhHHHHHHHHHHHHHcCCCEE
Confidence 34566777888876542 223677775433 34445555544 357776532 246667777888754 3688
Q ss_pred EEEeCC-CCCCCCChHHHHHHHHh
Q 026146 97 VIMDAD-LSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 97 ~~lD~D-~~~~~~~l~~l~~~~~~ 119 (242)
++=|+= -.++++.+.++++.+.+
T Consensus 96 lIHDaaRPfv~~~~i~~~i~~~~~ 119 (221)
T PF01128_consen 96 LIHDAARPFVSPELIDRVIEAARE 119 (221)
T ss_dssp EEEETTSTT--HHHHHHHHHHHHH
T ss_pred EEEccccCCCCHHHHHHHHHHHHh
Confidence 887774 34889999999999876
No 271
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=36.12 E-value=2.7e+02 Score=23.67 Aligned_cols=95 Identities=6% Similarity=0.060 Sum_probs=52.1
Q ss_pred CCCcEEEEEeCc-cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHh----CCCcEEEeeCC--CCcc
Q 026146 7 NKNKYSIIIPTY-NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLY----GEDRILLRPRP--KKLG 79 (242)
Q Consensus 7 ~~~~isiiip~~-n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~----~~~~~~~~~~~--~~~g 79 (242)
..|+++-+|..+ ++.+.++++|.++-.. .+.=+|=+|-.|++.....+....+.. ...+|.++... -..|
T Consensus 76 ~~~r~AYLI~~h~~d~~~l~RLL~aLYhp---rN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WG 152 (421)
T PLN03183 76 KLPRFAYLVSGSKGDLEKLWRTLRALYHP---RNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYR 152 (421)
T ss_pred CCCeEEEEEEecCCcHHHHHHHHHHhcCC---CceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccC
Confidence 368899999988 6778888888877322 233344456666654333333332211 12367776532 2333
Q ss_pred ---hHHHHH----HHHhhc-CCCEEEEEeCCCC
Q 026146 80 ---LGTAYI----HGLKHA-SGSFVVIMDADLS 104 (242)
Q Consensus 80 ---~~~a~n----~g~~~a-~~d~i~~lD~D~~ 104 (242)
.-+|-- ..++.+ .-||++.|-+.+.
T Consensus 153 G~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDy 185 (421)
T PLN03183 153 GPTMVANTLHACAILLKRSKDWDWFINLSASDY 185 (421)
T ss_pred ChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcc
Confidence 222222 222322 4589999888766
No 272
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=35.89 E-value=94 Score=22.40 Aligned_cols=49 Identities=10% Similarity=0.010 Sum_probs=36.7
Q ss_pred EEEeeCCCCcchHHHHHHHHhh----cCCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 69 ILLRPRPKKLGLGTAYIHGLKH----ASGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 69 ~~~~~~~~~~g~~~a~n~g~~~----a~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
+.+.-.+.|.|+-.+..+-++. .+-+|++++|..+.+.++.+-.|.+++
T Consensus 111 ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 111 IIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred EEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 3444466677876666655544 367999999999999999999888753
No 273
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=35.28 E-value=42 Score=30.57 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=34.4
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEe
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYV 131 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~ 131 (242)
+-=++.+|.|.....+.++.++..+.++.+|+++|+...
T Consensus 506 ~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmi 544 (730)
T COG1198 506 GARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMI 544 (730)
T ss_pred CCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhh
Confidence 445899999999999999999999999999999997633
No 274
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=35.26 E-value=46 Score=16.29 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=14.9
Q ss_pred HHHHhhhcC-CCeEEEEEeCCCC
Q 026146 29 YLIFKHLRD-VDFEIIVVDDGSP 50 (242)
Q Consensus 29 ~sl~~~~~~-~~~eiivvd~~s~ 50 (242)
+.|+.|... .++.|-|-|.|+.
T Consensus 2 ~~LL~qEDTDgn~qITIeD~GPK 24 (30)
T PF07492_consen 2 RSLLEQEDTDGNFQITIEDTGPK 24 (30)
T ss_pred hhHhhccccCCCcEEEEecCCCe
Confidence 456666444 6788888888764
No 275
>PF01793 Glyco_transf_15: Glycolipid 2-alpha-mannosyltransferase; InterPro: IPR002685 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This entry represents a family of fungi mannosyl-transferases involved in N-linked and O-linked glycosylation of proteins. They belong to the glycosyltransferase family 15 (GT15 from CAZY). Some of the enzymes in this family have been shown to be involved in O- and N-linked glycan modifications in the Golgi [].; GO: 0000030 mannosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 1S4P_A 1S4O_A 1S4N_A.
Probab=35.15 E-value=71 Score=25.99 Aligned_cols=113 Identities=4% Similarity=0.076 Sum_probs=45.5
Q ss_pred CCCcEEEEEeCcccc-ccHHHHHHHHHhhhcC-CCeEEEEEeCCC-CCChHHHHHHHHHHhCCCcEEEeeCC-CCcc---
Q 026146 7 NKNKYSIIIPTYNER-LNIALIVYLIFKHLRD-VDFEIIVVDDGS-PDGTQEVVKQLQQLYGEDRILLRPRP-KKLG--- 79 (242)
Q Consensus 7 ~~~~isiiip~~n~~-~~l~~~l~sl~~~~~~-~~~eiivvd~~s-~d~t~~~l~~~~~~~~~~~~~~~~~~-~~~g--- 79 (242)
..++-++|+.+.|++ ..+..+++++...... .++.+|++.|.. +++-.+.+..+. . ..+.+..-+ +..+
T Consensus 53 ~r~~Aafv~LvrN~dL~~~l~SI~~lE~rFN~kf~YpwvFlnd~pFteeFk~~i~~~~---~-~~v~F~~Ip~e~W~~P~ 128 (328)
T PF01793_consen 53 PRENAAFVMLVRNSDLEGLLSSIRSLEDRFNKKFNYPWVFLNDEPFTEEFKEAISNAT---S-GKVEFGLIPKEHWSYPD 128 (328)
T ss_dssp S---EEEEEE--GGGHHHHHHHHHHHHHHTTTTS---EEEEESS---HHHHHHHHHH----S-S-EEEEE--GGGSS--T
T ss_pred CCCceEEEEEEEchhHHHHHHHHHHHHHHccCCCCCCEEEEeCCCCCHHHHHHHHHhh---c-CceEEEEeCHHHcCCCC
Confidence 467889999999964 3344444444444333 578899998875 333334444332 1 234443311 1111
Q ss_pred -----hHHHHHHHHh----------------------------hcCCCEEEEEeCCCCCCCCChHHHHHHHHhcCCc
Q 026146 80 -----LGTAYIHGLK----------------------------HASGSFVVIMDADLSHHPKYLPSFIKKQLETGAS 123 (242)
Q Consensus 80 -----~~~a~n~g~~----------------------------~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 123 (242)
++...-..+. ....||.+=+++|..+.-+.=-...+.+++++..
T Consensus 129 ~ID~~~a~~~~~~~~~~~v~yg~s~sYr~McRf~SG~F~~hp~l~~ydyyWRvEP~v~~~Cdi~YD~F~~M~~n~k~ 205 (328)
T PF01793_consen 129 WIDQEKAAESREKMAEEGVPYGDSESYRHMCRFYSGFFYRHPLLQDYDYYWRVEPDVKFYCDIDYDPFRFMRDNNKK 205 (328)
T ss_dssp TS-HHHHHHHHHHHTT-TSTTTT-HHHHHHHHHHHHTGGGSGGGTT-SEEEE--TT-EE-S---S-HHHHHHHTT--
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHhhhcChhhcCccEEEEeCCCceeecCCCCCHHHHHHHhCCe
Confidence 1111111111 0136999999999887666655666666655433
No 276
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=35.03 E-value=1.4e+02 Score=20.13 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=22.4
Q ss_pred CeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC
Q 026146 39 DFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP 75 (242)
Q Consensus 39 ~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~ 75 (242)
+++++.|.-.+..++.+.++++.+.++ ....++..+
T Consensus 59 ~v~~v~vs~d~~~d~~~~~~~~~~~~~-~~~~~l~~~ 94 (142)
T cd02968 59 DVQVVFISVDPERDTPEVLKAYAKAFG-PGWIGLTGT 94 (142)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHhC-CCcEEEECC
Confidence 378888865444455666777777664 356666543
No 277
>PHA02518 ParA-like protein; Provisional
Probab=34.84 E-value=89 Score=22.98 Aligned_cols=36 Identities=22% Similarity=0.121 Sum_probs=22.2
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
+.+...++..|+.. +.|.|...++ |.-++++|.|-.
T Consensus 3 i~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q 40 (211)
T PHA02518 3 IAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQ 40 (211)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34444555566554 7777666654 566777777744
No 278
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=34.73 E-value=1e+02 Score=25.64 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=41.7
Q ss_pred HHhhc-CCCEEEEEeCCCCCCCC-ChHHHHHHHHhcCCcEEEEEEEeecCCccCchhhHHHHHhHHHHHHHHHhCCCccc
Q 026146 87 GLKHA-SGSFVVIMDADLSHHPK-YLPSFIKKQLETGASIVTGTRYVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSD 164 (242)
Q Consensus 87 g~~~a-~~d~i~~lD~D~~~~~~-~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (242)
|.... +.+||+-.|||..+... +++.+ ... +..++..|.......... ......
T Consensus 193 A~~~cP~a~YImKgDDDvFVrVp~lL~~L-r~~--prr~LY~G~v~~~~~p~R---------------------d~~PpY 248 (382)
T PTZ00210 193 ALHMFPNVSYIVKGDDDIFIRVPKYLADL-RVM--PRHGLYMGRYNYYNRIWR---------------------RNQLTY 248 (382)
T ss_pred HHHhCCCCCeEEEcCCCeEeeHHHHHHHH-hhC--CCCceEEEeeCCCCcccc---------------------CCCCCc
Confidence 33444 57999999999998744 44443 332 334466664332211000 001344
Q ss_pred cccchhhcchHHHHHhhhc
Q 026146 165 LTGSFRLYKKSVLEDVISS 183 (242)
Q Consensus 165 ~~g~~~~~rr~~~~~~~~~ 183 (242)
..|.+.++++++.+.+...
T Consensus 249 ~~G~gYvLSrDVA~~Lvs~ 267 (382)
T PTZ00210 249 VNGYCITLSRDTAQAIISY 267 (382)
T ss_pred cccceeeccHHHHHHHHhh
Confidence 6677788999988887433
No 279
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=34.68 E-value=70 Score=20.72 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=21.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHH
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQ 62 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~ 62 (242)
.++++.|.+. ...++++.|+|+....+..+++.+
T Consensus 20 ~e~l~~L~~~----g~~~~~lTNns~~s~~~~~~~L~~ 53 (101)
T PF13344_consen 20 VEALDALRER----GKPVVFLTNNSSRSREEYAKKLKK 53 (101)
T ss_dssp HHHHHHHHHT----TSEEEEEES-SSS-HHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCEEEEeCCCCCCHHHHHHHHHh
Confidence 4455555443 458999999888777777777744
No 280
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=34.60 E-value=83 Score=20.86 Aligned_cols=36 Identities=6% Similarity=0.131 Sum_probs=25.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC
Q 026146 26 LIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG 65 (242)
Q Consensus 26 ~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~ 65 (242)
.++.++.+. ...+||+....++.+.+-++.++..+.
T Consensus 32 ~vlkalk~g----kaklViiA~D~~~~~kkki~~~~~~~~ 67 (108)
T PTZ00106 32 STLKALRNG----KAKLVIISNNCPPIRRSEIEYYAMLSK 67 (108)
T ss_pred HHHHHHHcC----CeeEEEEeCCCCHHHHHHHHHHHhhcC
Confidence 455666543 456777777788888888888887754
No 281
>PRK10037 cell division protein; Provisional
Probab=34.54 E-value=79 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=27.9
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
+.+...++..||.. +.|.|...++ |.=|+++|.|..
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q 41 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD 41 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh
Confidence 55666777778776 8898888875 667999999865
No 282
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=34.03 E-value=1.8e+02 Score=23.37 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=26.7
Q ss_pred CccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee
Q 026146 17 TYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 17 ~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
||.....+..+|..+.++- ..+++||++.-+..+-...++++.+. +..++++.
T Consensus 121 T~~~S~tv~~~l~~a~~~~--~~f~V~v~EsrP~~~G~~~a~~L~~~--gI~vtlI~ 173 (301)
T TIGR00511 121 THCNSEAALSVIKTAFEQG--KDIEVIATETRPRKQGHITAKELRDY--GIPVTLIV 173 (301)
T ss_pred EECCcHHHHHHHHHHHHcC--CcEEEEEecCCCcchHHHHHHHHHHC--CCCEEEEe
Confidence 3443344555555444331 45677766554444445555555443 34566654
No 283
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=33.65 E-value=1.1e+02 Score=18.44 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=35.3
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCC
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPK 76 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~ 76 (242)
|+..+.+...|..+.++. + .+++|..|+......++++++.... +.++..+.
T Consensus 14 ~~D~~~i~~~Ld~~~~~~--~--~~~lvhGga~~GaD~iA~~wA~~~g---v~~~~~~a 65 (71)
T PF10686_consen 14 WTDHELIWAALDKVHARH--P--DMVLVHGGAPKGADRIAARWARERG---VPVIRFPA 65 (71)
T ss_pred cccHHHHHHHHHHHHHhC--C--CEEEEECCCCCCHHHHHHHHHHHCC---CeeEEeCc
Confidence 555667777888777663 2 3668888887788888888887754 44444443
No 284
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=3.4e+02 Score=24.42 Aligned_cols=104 Identities=13% Similarity=0.110 Sum_probs=61.4
Q ss_pred CCCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC-CCcEEEeeCCCCcchHHHH
Q 026146 6 KNKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG-EDRILLRPRPKKLGLGTAY 84 (242)
Q Consensus 6 ~~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~a~ 84 (242)
...|++ ++|.-|- +.|.-+|+.|.++ .-.|+.|+-.+-..+-.+.++.-....| +..+..+..+.-...|-++
T Consensus 43 ~~~p~~--LLPlaNV-pmIdYtL~~L~~a---gV~eVfvfc~~~~~qi~e~i~~sew~~~~~~~v~ti~s~~~~S~GDam 116 (673)
T KOG1461|consen 43 LEKPRV--LLPLANV-PMIDYTLEWLERA---GVEEVFVFCSAHAAQIIEYIEKSEWYLPMSFIVVTICSGESRSVGDAM 116 (673)
T ss_pred cCCCce--EeeecCc-hHHHHHHHHHHhc---CceEEEEEecccHHHHHHHHhhccccccccceEEEEcCCCcCcHHHHH
Confidence 345666 8888883 5688899999876 4558888876544444444443111112 2234555555445677777
Q ss_pred HHHHhhc--CCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 85 IHGLKHA--SGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 85 n~g~~~a--~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
..--+++ +||++++- +|.... --|.++++..
T Consensus 117 R~id~k~litgDFiLVs-gd~vsN-~pl~~~l~eH 149 (673)
T KOG1461|consen 117 RDIDEKQLITGDFILVS-GDTVSN-MPLRNVLEEH 149 (673)
T ss_pred HHHHhcceeecceEEEe-CCeeec-CchHHHHHHH
Confidence 6665554 57877654 554433 4466666655
No 285
>PRK04017 hypothetical protein; Provisional
Probab=33.23 E-value=1.7e+02 Score=20.32 Aligned_cols=70 Identities=13% Similarity=0.075 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeC
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDA 101 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~ 101 (242)
+.+.+.++.|..... .-.+|||+.-+ | .+.++++ +....++.... .+..... .-+..-..+.+++.|.
T Consensus 7 ~~~~e~i~~L~e~s~--~g~vIVVEGk~-D--~~~L~~l-----Gv~~~iI~t~g-~~~~~~~-e~ia~~~r~VIILTD~ 74 (132)
T PRK04017 7 ERFEEIIEELKEFSE--AGAPIIVEGKR-D--VESLRKL-----GVEGEIIKVSR-TPLAEIA-ELIASRGKEVIILTDF 74 (132)
T ss_pred HHHHHHHHHHHHhcC--CCCEEEEeCcc-H--HHHHHHc-----CCCccEEEECC-eecchHH-HHHHhcCCeEEEEECC
Confidence 456778888876642 22467775543 3 3334444 12222232221 1222222 2222234588888899
Q ss_pred CC
Q 026146 102 DL 103 (242)
Q Consensus 102 D~ 103 (242)
|.
T Consensus 75 D~ 76 (132)
T PRK04017 75 DR 76 (132)
T ss_pred Cc
Confidence 83
No 286
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=32.96 E-value=78 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=27.7
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
+.+. .++..||.. +.|.|...|+ |.=++++|.|...
T Consensus 4 iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~ 41 (273)
T PRK13232 4 IAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKA 41 (273)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEeccccc
Confidence 4455 677778766 8999998886 6779999999763
No 287
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=32.95 E-value=2.4e+02 Score=22.09 Aligned_cols=54 Identities=19% Similarity=0.350 Sum_probs=36.8
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQL 63 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~ 63 (242)
..|.||+|.-.. .+..+.+..+.+......+.++++..+.+.+..+.++.+.+.
T Consensus 2 ~~IGvivp~~~n-pff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~ 55 (279)
T PF00532_consen 2 KTIGVIVPDISN-PFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQR 55 (279)
T ss_dssp CEEEEEESSSTS-HHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCC-cHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhc
Confidence 468889998753 556677777766655567888888766655555666666554
No 288
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=32.59 E-value=83 Score=24.55 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=28.1
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC--CCEEEEEeCCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS--GSFVVIMDADLSHH 106 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~--~d~i~~lD~D~~~~ 106 (242)
+.+. .++..||.. +.|.|...|+ |.=++++|.|....
T Consensus 5 Iav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~ 44 (275)
T PRK13233 5 IAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKAD 44 (275)
T ss_pred EEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcC
Confidence 4455 676778775 9999999983 77799999997743
No 289
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=31.89 E-value=2.5e+02 Score=21.95 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=16.9
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHH
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKK 116 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~ 116 (242)
-+-+++||+|.++.. -|.+|.+.
T Consensus 114 ~~kvlYLD~Dviv~~-dl~eL~~~ 136 (257)
T cd06429 114 LEKVIYLDDDVVVQK-DLTELWNT 136 (257)
T ss_pred hCeEEEEeCCEEEeC-CHHHHhhC
Confidence 578999999987665 56666653
No 290
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=31.39 E-value=3e+02 Score=22.77 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.3
Q ss_pred CCCEEEEEeCCCCCCCCChHHH
Q 026146 92 SGSFVVIMDADLSHHPKYLPSF 113 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~~~~l~~l 113 (242)
.+|.+++.|.|.++.|+.|..+
T Consensus 178 ~dDliivSDvDEIP~p~~l~~L 199 (356)
T PF04724_consen 178 DDDLIIVSDVDEIPSPETLKFL 199 (356)
T ss_pred CCCEEEEcCcccccCHHHHHHH
Confidence 4899999999999999887765
No 291
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=30.97 E-value=3.1e+02 Score=22.82 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=8.7
Q ss_pred CCCEEEEEeCCCCCC
Q 026146 92 SGSFVVIMDADLSHH 106 (242)
Q Consensus 92 ~~d~i~~lD~D~~~~ 106 (242)
+.|.|+=+-+-..++
T Consensus 88 ~~D~IiaiGGGS~iD 102 (383)
T PRK09860 88 NCDSVISLGGGSPHD 102 (383)
T ss_pred CCCEEEEeCCchHHH
Confidence 356666666654444
No 292
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=30.59 E-value=3.1e+02 Score=22.61 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=7.1
Q ss_pred hHHHHHHHHhcCCcEEE
Q 026146 110 LPSFIKKQLETGASIVT 126 (242)
Q Consensus 110 l~~l~~~~~~~~~~~v~ 126 (242)
++++.+.+.+.++|+++
T Consensus 66 v~~~~~~~~~~~~D~II 82 (367)
T cd08182 66 LAAGIRLLREFGPDAVL 82 (367)
T ss_pred HHHHHHHHHhcCcCEEE
Confidence 44444444444444433
No 293
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=30.43 E-value=2.8e+02 Score=22.00 Aligned_cols=67 Identities=7% Similarity=0.105 Sum_probs=41.0
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcC--CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRD--VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR 74 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~--~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~ 74 (242)
..-.+++++.++|. +..++..+.|+..... ..++++.||=..-.......+++..+++..+..++..
T Consensus 29 e~~~ltl~ltcR~~-~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~di~~rf~~ld~iylNA 97 (341)
T KOG1478|consen 29 ENVRLTLCLTCRNM-SKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKDIKQRFQRLDYIYLNA 97 (341)
T ss_pred CceeEEEEEEeCCh-hHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHHHHHHhhhccEEEEcc
Confidence 34568999999885 4466677777666332 3567777765433333444556677776445555553
No 294
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=30.10 E-value=1.4e+02 Score=26.45 Aligned_cols=72 Identities=18% Similarity=0.194 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 41 EIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 41 eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
=+++|||||+++....++++.. | +..+.++..... +-+. ...-+..--.+|.+= +|..+..+.|..-+..+-
T Consensus 420 L~VlvDnGsTeEDipA~~~~k~-Y-gi~ivVVDHH~P-de~v-vD~yvd~HVNPy~vG--gd~~itaG~L~vEiArmI 491 (715)
T COG1107 420 LLVLVDNGSTEEDIPAIKQLKA-Y-GIDIVVVDHHYP-DEAV-VDEYVDVHVNPYLVG--GDSNITAGMLCVEIARMI 491 (715)
T ss_pred eEEEEcCCCcccccHHHHHHHh-c-CCCEEEEcCCCC-cchh-hhhhhhhccChhhcC--CCcCcchhHHHHHHHHHc
Confidence 4888999999887666666533 3 356777665432 3222 111111111233332 566677777776665553
No 295
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=29.90 E-value=2.1e+02 Score=23.10 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=22.7
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
|.....+...|....++- ..++|+|.+..+..+-...++++.+. +.++.++.
T Consensus 127 ~~~S~tv~~~l~~A~~~~--k~~~V~v~EsrP~~~G~~~a~~L~~~--GI~vtlI~ 178 (310)
T PRK08535 127 HCNSSAALSVIKTAHEQG--KDIEVIATETRPRNQGHITAKELAEY--GIPVTLIV 178 (310)
T ss_pred eCCcHHHHHHHHHHHHCC--CeEEEEEecCCchhhHHHHHHHHHHC--CCCEEEEe
Confidence 333344444444443331 34566555444433334444444433 23455554
No 296
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=29.86 E-value=2.9e+02 Score=22.41 Aligned_cols=102 Identities=16% Similarity=0.070 Sum_probs=65.6
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHH---HhhcCCCEEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHG---LKHASGSFVVI 98 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g---~~~a~~d~i~~ 98 (242)
+.+..-++++.+.. .-.||++|-=-.++.-.+.+.+.+++++ ..++|++.....|-++++-.- +-....+.+++
T Consensus 36 pmI~Hhi~ac~qi~--~l~eI~LvGFy~e~~f~~fis~~~~e~~-~pvrYL~E~~plGtaGgLyhFrdqIl~g~ps~vFv 112 (407)
T KOG1460|consen 36 PMIHHHISACKQIS--GLAEILLVGFYEERVFTDFISAIQQEFK-VPVRYLREDNPLGTAGGLYHFRDQILAGSPSAVFV 112 (407)
T ss_pred chhhhhHHHHhccc--chhheeEEecccchHHHHHHHHHHhhcc-cchhhhccCCCCCcccceeehhhHHhcCCCceEEE
Confidence 45666677775542 3447777755445566777888888876 469999988788877765432 23345688999
Q ss_pred EeCCCCCCCCChHHHHHHHHhc-CCcEEEE
Q 026146 99 MDADLSHHPKYLPSFIKKQLET-GASIVTG 127 (242)
Q Consensus 99 lD~D~~~~~~~l~~l~~~~~~~-~~~~v~~ 127 (242)
+++|..-+ -=|+.++++.... ......+
T Consensus 113 lnaDVCcs-fPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 113 LNADVCCS-FPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred EecceecC-CcHHHHHHHHhhcCCceEEEE
Confidence 99996532 2266777666543 3333333
No 297
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=29.81 E-value=2.4e+02 Score=23.23 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=6.4
Q ss_pred CCEEEEEeCCCCC
Q 026146 93 GSFVVIMDADLSH 105 (242)
Q Consensus 93 ~d~i~~lD~D~~~ 105 (242)
.|.|+=+-+-..+
T Consensus 84 ~D~IIavGGGSvi 96 (357)
T cd08181 84 ADFVIGIGGGSPL 96 (357)
T ss_pred CCEEEEeCCchHH
Confidence 4555555554433
No 298
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=1.3e+02 Score=20.30 Aligned_cols=79 Identities=16% Similarity=0.162 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCC
Q 026146 24 IALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADL 103 (242)
Q Consensus 24 l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~ 103 (242)
+.++...+.+. ..--|++..|.+..+....+..+++.++ ..+.++.+....|.+.+.+. ...+...|...
T Consensus 32 ~~e~~Kai~~g---~a~LVviA~Dv~P~~~~~~l~~lc~~~~-vpyv~V~sk~~LG~a~g~~~------~~vv~i~~~~~ 101 (116)
T COG1358 32 TNEVTKAIERG---KAKLVVIAEDVSPEELVKHLPALCEEKN-VPYVYVGSKKELGKAVGKEV------RKVVAIVDKGF 101 (116)
T ss_pred HHHHHHHHHcC---CCcEEEEecCCCHHHHHHHHHHHHHhcC-CCEEEeCCHHHHHHHhCCCc------ceeEEEeehhh
Confidence 34455555443 1223555556555777777888887664 56777766666665544433 45555555543
Q ss_pred CCCCCChHHHHH
Q 026146 104 SHHPKYLPSFIK 115 (242)
Q Consensus 104 ~~~~~~l~~l~~ 115 (242)
. ++++.++.
T Consensus 102 ~---~~~~~l~~ 110 (116)
T COG1358 102 A---KKLEDLVE 110 (116)
T ss_pred h---hHHHHHHH
Confidence 2 44444443
No 299
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=29.20 E-value=1.2e+02 Score=22.53 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=26.5
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
+.+. .++..||.. +.|.|...|+ |.-++++|.|...
T Consensus 3 iav~-gKGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~ 40 (212)
T cd02117 3 IAIY-GKGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKA 40 (212)
T ss_pred EEEE-CCCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 3444 466777766 8898888886 6679999999653
No 300
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=29.18 E-value=1.2e+02 Score=25.48 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCCC-CCCChHHHHHHHHh
Q 026146 50 PDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSH-HPKYLPSFIKKQLE 119 (242)
Q Consensus 50 ~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~ 119 (242)
.+++.+.+++....+. ..+++-.-.....+.|++.++++.+ + ++.|+|..+ .|+-+..++....+
T Consensus 137 ~~~~~~~~~~~~~e~~--p~~~v~~~~~~~~~ea~~~evE~~r--~-~~~dad~~i~~P~~~~~li~~~k~ 202 (415)
T KOG1971|consen 137 SANIKEFFRRHGSEYS--PGKFVFPMFQPDFSEARLMEVEHFR--K-FSVDADFVITRPNTLRNLIVLNKE 202 (415)
T ss_pred hhccHHHHHHhccccC--CeeEEeeccCccHHHHHHHHHHHhh--h-cccccceeccCChhHHHHHHHhhh
Confidence 3456777777655543 2355554556789999999999998 4 889999884 58889888887765
No 301
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=29.18 E-value=1e+02 Score=24.13 Aligned_cols=37 Identities=16% Similarity=0.146 Sum_probs=28.0
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSHH 106 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~~ 106 (242)
+.+. .++..||.. +.|.|...|+ |.=|+++|.|-...
T Consensus 4 iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~ 42 (274)
T PRK13235 4 VAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKAD 42 (274)
T ss_pred EEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCccc
Confidence 4455 566777765 8999998886 66799999997744
No 302
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.03 E-value=3.2e+02 Score=22.35 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=47.1
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCC---CChHHHHHHHHHHh-CCCcEEEeeCCCCcchHHHHHHHHhhcCCCE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSP---DGTQEVVKQLQQLY-GEDRILLRPRPKKLGLGTAYIHGLKHASGSF 95 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~---d~t~~~l~~~~~~~-~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~ 95 (242)
..+.+.+..+.+.+. ....|.++|-... ++..+.++.+.+.. |...+- ++.+.|.|.+.|.-.+.-.+-.+
T Consensus 142 ~~e~l~~~a~~~~~~---Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig-~H~HnnlGla~ANslaAi~aGa~- 216 (337)
T PRK08195 142 PPEKLAEQAKLMESY---GAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVG-FHGHNNLGLGVANSLAAVEAGAT- 216 (337)
T ss_pred CHHHHHHHHHHHHhC---CCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEE-EEeCCCcchHHHHHHHHHHhCCC-
Confidence 444444444444332 3346777766442 23455555555554 233343 34555788777777655555444
Q ss_pred EEEEeCCCC-----CCCCChHHHHHHHHh
Q 026146 96 VVIMDADLS-----HHPKYLPSFIKKQLE 119 (242)
Q Consensus 96 i~~lD~D~~-----~~~~~l~~l~~~~~~ 119 (242)
.+|+-.. .-.--++.++..++.
T Consensus 217 --~iD~Sl~GlG~~aGN~~tE~lv~~L~~ 243 (337)
T PRK08195 217 --RIDGSLAGLGAGAGNTPLEVLVAVLDR 243 (337)
T ss_pred --EEEecChhhcccccCccHHHHHHHHHh
Confidence 3444332 112345666655543
No 303
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=28.98 E-value=1.1e+02 Score=21.67 Aligned_cols=36 Identities=28% Similarity=0.228 Sum_probs=26.2
Q ss_pred EEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 70 LLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 70 ~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
.+...++..|+.. +.|.|...|+ |.-++++|.|..-
T Consensus 3 ~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 3 AVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 3445555667655 8888888875 7779999999663
No 304
>COG4224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.42 E-value=1.5e+02 Score=18.17 Aligned_cols=40 Identities=20% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHh
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLY 64 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~ 64 (242)
++.|+++..+....--.|-|||--..|-|.+-+.+....+
T Consensus 34 ~eYl~~fr~~vk~~l~~ikiiDp~GnDVTP~Klk~~q~~~ 73 (77)
T COG4224 34 REYLESFRGQVKNQLENIKIIDPKGNDVTPEKLKQIQRKK 73 (77)
T ss_pred HHHHHHHHHHHHHhhcceeeeCCCCCCCChHHHHHHHHHh
Confidence 3456666666544223577888888899999999887654
No 305
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=27.76 E-value=1.5e+02 Score=21.97 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=25.7
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhc--CCCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHA--SGSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a--~~d~i~~lD~D~~ 104 (242)
+.+...++..|+.. +.|.|...| .|.-++++|.|..
T Consensus 38 i~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 38 IMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 44444555667665 888888877 3788999999965
No 306
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=27.08 E-value=3.6e+02 Score=22.21 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCC-ChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhh---cCCCEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPD-GTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKH---ASGSFVV 97 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d-~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~---a~~d~i~ 97 (242)
..+.--++++... .--+|++.-+=.+. --.+.++.+...+. ..+..-...+..|.++-...+=+. -.+.-++
T Consensus 41 pmI~hqieal~ns---Gi~~I~la~~y~s~sl~~~~~k~y~~~lg-Vei~~s~eteplgtaGpl~laR~~L~~~~~~~ff 116 (371)
T KOG1322|consen 41 PMILHQIEALINS---GITKIVLATQYNSESLNRHLSKAYGKELG-VEILASTETEPLGTAGPLALARDFLWVFEDAPFF 116 (371)
T ss_pred hhhHHHHHHHHhC---CCcEEEEEEecCcHHHHHHHHHHhhhccc-eEEEEEeccCCCcccchHHHHHHHhhhcCCCcEE
Confidence 3344455555543 23367777664433 34455555544433 333333344455543333322222 2233688
Q ss_pred EEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 98 IMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 98 ~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
+|++|....=+ +.++++...+++.++-+
T Consensus 117 VLnsDvi~~~p-~~~~vqfH~~~gae~TI 144 (371)
T KOG1322|consen 117 VLNSDVICRMP-YKEMVQFHRAHGAEITI 144 (371)
T ss_pred EecCCeeecCC-HHHHHHHHHhcCCceEE
Confidence 89999765543 56677777777766643
No 307
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.65 E-value=2.4e+02 Score=20.04 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=14.3
Q ss_pred EEEeCCCCCChHHHHHHHHHHhCCCcEEEeeC
Q 026146 43 IVVDDGSPDGTQEVVKQLQQLYGEDRILLRPR 74 (242)
Q Consensus 43 ivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~ 74 (242)
|.||..+.. ..+.+.+.+.+++ ..+.++.+
T Consensus 4 I~VDADACP-Vk~~i~r~A~r~~-~~v~~Van 33 (150)
T COG1671 4 IWVDADACP-VKDEIYRVAERMG-LKVTFVAN 33 (150)
T ss_pred EEEeCCCCc-hHHHHHHHHHHhC-CeEEEEeC
Confidence 344443333 5555555555553 34555443
No 308
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=26.59 E-value=1.8e+02 Score=22.15 Aligned_cols=30 Identities=33% Similarity=0.493 Sum_probs=25.1
Q ss_pred hcCCCE-EEEEeCCCCCCCCChHHHHHHHHh
Q 026146 90 HASGSF-VVIMDADLSHHPKYLPSFIKKQLE 119 (242)
Q Consensus 90 ~a~~d~-i~~lD~D~~~~~~~l~~l~~~~~~ 119 (242)
...+.| ++|+|+|-...|.+++..+..+..
T Consensus 128 ~~~~~fDliFIDadK~~yp~~le~~~~lLr~ 158 (219)
T COG4122 128 LLDGSFDLVFIDADKADYPEYLERALPLLRP 158 (219)
T ss_pred ccCCCccEEEEeCChhhCHHHHHHHHHHhCC
Confidence 455677 899999999999999999998743
No 309
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=26.44 E-value=2.5e+02 Score=20.21 Aligned_cols=72 Identities=10% Similarity=0.167 Sum_probs=35.9
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHH-HHHHHHHhCCCcEEEee-CCCCcchHH--HHHHHHhhcCCCE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEV-VKQLQQLYGEDRILLRP-RPKKLGLGT--AYIHGLKHASGSF 95 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~-l~~~~~~~~~~~~~~~~-~~~~~g~~~--a~n~g~~~a~~d~ 95 (242)
..+.+...++.+.+ ....|.++ |+++++.+. .+.+.+.+|+ +.+.. .+...+... +.-..++.+..|+
T Consensus 31 g~dl~~~ll~~~~~----~~~~v~ll--G~~~~~~~~~~~~l~~~yp~--l~i~g~~~g~~~~~~~~~i~~~I~~~~pdi 102 (171)
T cd06533 31 GSDLMPALLELAAQ----KGLRVFLL--GAKPEVLEKAAERLRARYPG--LKIVGYHHGYFGPEEEEEIIERINASGADI 102 (171)
T ss_pred cHHHHHHHHHHHHH----cCCeEEEE--CCCHHHHHHHHHHHHHHCCC--cEEEEecCCCCChhhHHHHHHHHHHcCCCE
Confidence 33444555554433 35578888 555554444 4466777774 44443 233333222 2234445555566
Q ss_pred EEEE
Q 026146 96 VVIM 99 (242)
Q Consensus 96 i~~l 99 (242)
|++-
T Consensus 103 v~vg 106 (171)
T cd06533 103 LFVG 106 (171)
T ss_pred EEEE
Confidence 5543
No 310
>PRK01220 malonate decarboxylase subunit delta; Provisional
Probab=26.44 E-value=1.9e+02 Score=18.87 Aligned_cols=47 Identities=13% Similarity=0.109 Sum_probs=30.0
Q ss_pred CCCcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCCh
Q 026146 7 NKNKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGT 53 (242)
Q Consensus 7 ~~~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t 53 (242)
....|.|..++-+-...=+..++.+......+...|.|=|.|.+...
T Consensus 38 ~~~~v~I~Tsv~Gf~~~Wqavl~rf~~~~~~~~~~i~InD~GATP~V 84 (99)
T PRK01220 38 GKLSIQVVTSVNGSAARWKALFERFFTAQTPPAANIDIHDFGATPGV 84 (99)
T ss_pred CcEEEEEEecccCcHHHHHHHHHHHHhhCCCCccEEEEeCCCCCcHh
Confidence 34556666666666666667777766654335677777777777653
No 311
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=26.33 E-value=1.3e+02 Score=23.27 Aligned_cols=31 Identities=19% Similarity=0.170 Sum_probs=24.8
Q ss_pred CCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 74 RPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 74 ~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
.++..||.. +.|.|...|. |.=++++|.|-.
T Consensus 7 gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 7 GKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred cCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 466778776 8998888886 777999999965
No 312
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=26.12 E-value=3.9e+02 Score=22.39 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=36.9
Q ss_pred EEEEEeC---cc-ccccHHHHHHHHHhhhcCCCeEEEEEeCCCC-CChHHHHHHHHHHhCCCcEEEee
Q 026146 11 YSIIIPT---YN-ERLNIALIVYLIFKHLRDVDFEIIVVDDGSP-DGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 11 isiiip~---~n-~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~-d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
++|++.. || ..+.+.+.+.++.++. ++.+++|+-||+. ++..+.++++.-. .++..+.
T Consensus 196 ~~ivv~sRLvyrKGiDll~~iIp~vc~~~--p~vrfii~GDGPk~i~lee~lEk~~l~---~rV~~lG 258 (426)
T KOG1111|consen 196 ITIVVASRLVYRKGIDLLLEIIPSVCDKH--PEVRFIIIGDGPKRIDLEEMLEKLFLQ---DRVVMLG 258 (426)
T ss_pred eEEEEEeeeeeccchHHHHHHHHHHHhcC--CCeeEEEecCCcccchHHHHHHHhhcc---CceEEec
Confidence 4444433 56 4466677888877654 6889999999994 4566666665322 2455554
No 313
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=25.93 E-value=2.2e+02 Score=19.36 Aligned_cols=17 Identities=24% Similarity=0.104 Sum_probs=9.2
Q ss_pred HHHHhhcCCCEEEEEeC
Q 026146 85 IHGLKHASGSFVVIMDA 101 (242)
Q Consensus 85 n~g~~~a~~d~i~~lD~ 101 (242)
+..-.....|.++|+|+
T Consensus 28 ~l~~~l~~~d~viiVDA 44 (134)
T TIGR00140 28 YLLPLIESADRLIILDA 44 (134)
T ss_pred HHHHHHhcCCeEEEEec
Confidence 33333345567777775
No 314
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=25.90 E-value=3.8e+02 Score=22.09 Aligned_cols=9 Identities=11% Similarity=0.124 Sum_probs=3.8
Q ss_pred CEEEEEeCC
Q 026146 94 SFVVIMDAD 102 (242)
Q Consensus 94 d~i~~lD~D 102 (242)
|.|+=+-+-
T Consensus 82 d~IiaiGGG 90 (370)
T cd08551 82 DGVIAVGGG 90 (370)
T ss_pred CEEEEeCCc
Confidence 444444443
No 315
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=25.67 E-value=2.2e+02 Score=24.38 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=57.7
Q ss_pred CccccccHHHHHHHHHhhhcCCCeEEEEEeCCC-----CCChHHHHHHHHHHhC---CCcEEEeeCCCCcc-----hHHH
Q 026146 17 TYNERLNIALIVYLIFKHLRDVDFEIIVVDDGS-----PDGTQEVVKQLQQLYG---EDRILLRPRPKKLG-----LGTA 83 (242)
Q Consensus 17 ~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-----~d~t~~~l~~~~~~~~---~~~~~~~~~~~~~g-----~~~a 83 (242)
+|...+.|.+.|..+.+... + ++|+|-..+ -|+...+++++..+.| +..+..+..+.-.| ...+
T Consensus 73 VfGg~~~L~~aI~~~~~~~~-P--~~I~V~ttC~~eiIGDDi~~v~~~~~~~~p~~~~~pvi~v~tpgF~g~~~~G~~~a 149 (455)
T PRK14476 73 ILGGDENVEEAILNICKKAK-P--KIIGLCTTGLTETRGDDVAGALKEIRARHPELADTPIVYVSTPDFKGALEDGWAAA 149 (455)
T ss_pred EeCCHHHHHHHHHHHHHhhC-C--CEEEEeCcchHhhhhccHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHH
Confidence 35666888888888876533 3 345444444 2567777777776654 34566666554332 2222
Q ss_pred HHHHHhh-c--------CCCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 84 YIHGLKH-A--------SGSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 84 ~n~g~~~-a--------~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
...-++. . +..-|-++- ...+.+..++++.+.++.-+..++.
T Consensus 150 ~~al~~~~~~~~~~~~~~~~~VNiIg-g~~~~~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 150 VEAIVEALVPPASSTGRRPRQVNVLP-GSHLTPGDIEELREIIEAFGLEPII 200 (455)
T ss_pred HHHHHHHhcccccCCCCCCCcEEEEC-CCCCCcccHHHHHHHHHHcCCceEE
Confidence 2222221 1 112244441 2224466778888887776776643
No 316
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=25.37 E-value=2.3e+02 Score=22.99 Aligned_cols=6 Identities=0% Similarity=0.230 Sum_probs=2.5
Q ss_pred EEEeeC
Q 026146 69 ILLRPR 74 (242)
Q Consensus 69 ~~~~~~ 74 (242)
|.++..
T Consensus 116 V~iI~~ 121 (319)
T PRK08769 116 VVIVDP 121 (319)
T ss_pred EEEecc
Confidence 444443
No 317
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=25.04 E-value=1.6e+02 Score=23.10 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=25.0
Q ss_pred CCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 74 RPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 74 ~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
.++..||.. +.|.|...|+ |.-++++|.|...
T Consensus 8 gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq~ 41 (279)
T PRK13230 8 GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPKA 41 (279)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCcc
Confidence 566677766 8898888886 5669999999773
No 318
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=24.80 E-value=3.3e+02 Score=21.78 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=19.6
Q ss_pred CCCcEEEEEeCccc----cccHHHHHHHHHhhhcCCCeEEEEEeCCC
Q 026146 7 NKNKYSIIIPTYNE----RLNIALIVYLIFKHLRDVDFEIIVVDDGS 49 (242)
Q Consensus 7 ~~~~isiiip~~n~----~~~l~~~l~sl~~~~~~~~~eiivvd~~s 49 (242)
..|++.++.|.-+. .+.+++..+.+........+.|+|+++..
T Consensus 59 ~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad 105 (290)
T PRK05917 59 IHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEAD 105 (290)
T ss_pred CCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCceEEEEechh
Confidence 45666666665432 12223333333222111455677776654
No 319
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=24.63 E-value=1.1e+02 Score=24.69 Aligned_cols=113 Identities=13% Similarity=0.106 Sum_probs=69.0
Q ss_pred CCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCC---CCCCChHHHHHHHHhcCCcEEEEEE------------
Q 026146 65 GEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLS---HHPKYLPSFIKKQLETGASIVTGTR------------ 129 (242)
Q Consensus 65 ~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~---~~~~~l~~l~~~~~~~~~~~v~~~~------------ 129 (242)
+++....+.-. |-++-.++-+++..-+-++++|-|.. ++..++..+..-++.+++.+.+|..
T Consensus 120 ~npkkvlVVgg---gDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGG---GDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCeEEEEec---CCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 34444444433 34445666677766677777777644 4556666666555544555555511
Q ss_pred --EeecCCccCchhhHHHHHhHHHHHHHHHhCCCccccccchhhcchHHHHHh
Q 026146 130 --YVRSGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSVLEDV 180 (242)
Q Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ 180 (242)
.......+-.+-...+.......+...+.+.++-...+-|+-+..+.+++.
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~ 249 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEG 249 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHH
Confidence 001111222344455666777778888888888888889988999888886
No 320
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=24.50 E-value=1.5e+02 Score=23.00 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 74 RPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 74 ~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
.++..||.. +.|.|...|+ |.-++++|.|...
T Consensus 7 gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q~ 40 (268)
T TIGR01281 7 GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPKH 40 (268)
T ss_pred cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCccc
Confidence 466677766 8998888876 5669999999764
No 321
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=24.43 E-value=3.2e+02 Score=21.44 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=44.3
Q ss_pred CeEEEEEeCCCCCChHH-HHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCCCCCCCChHHHHHHH
Q 026146 39 DFEIIVVDDGSPDGTQE-VVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADLSHHPKYLPSFIKKQ 117 (242)
Q Consensus 39 ~~eiivvd~~s~d~t~~-~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~ 117 (242)
...++|+.+..++.+.. .+..++..+. ..+.++.....+|.+ +-....-.+.+.|.+. -+...|..+++.+
T Consensus 148 KAkLVIIA~DVsPie~vk~LpaLCrk~~-VPY~iVktKaeLG~A------IGkKtravVAItD~g~-ed~~~l~~lv~~~ 219 (263)
T PTZ00222 148 QARMVVIANNVDPVELVLWMPNLCRANK-IPYAIVKDMARLGDA------IGRKTATCVAITDVNA-EDEAALKNLIRSV 219 (263)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHhcC-CCEEEECCHHHHHHH------HCCCCCeEEEEeeCCc-ccHHHHHHHHHHH
Confidence 45777777767776664 4888888764 445555444444432 3343455777777553 4455677777776
Q ss_pred Hh
Q 026146 118 LE 119 (242)
Q Consensus 118 ~~ 119 (242)
..
T Consensus 220 ~~ 221 (263)
T PTZ00222 220 NA 221 (263)
T ss_pred HH
Confidence 54
No 322
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=24.40 E-value=1.9e+02 Score=18.26 Aligned_cols=34 Identities=24% Similarity=0.223 Sum_probs=20.0
Q ss_pred EeeCCCCcchHH-HHHHHHhhc-CCCEEEEEeCCCC
Q 026146 71 LRPRPKKLGLGT-AYIHGLKHA-SGSFVVIMDADLS 104 (242)
Q Consensus 71 ~~~~~~~~g~~~-a~n~g~~~a-~~d~i~~lD~D~~ 104 (242)
+...++..|+.. +.|.+...+ ++.=++++|.|..
T Consensus 4 ~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~ 39 (104)
T cd02042 4 VANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ 39 (104)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 444455556544 666666666 4556777777643
No 323
>PRK07714 hypothetical protein; Provisional
Probab=24.37 E-value=1.8e+02 Score=18.78 Aligned_cols=37 Identities=8% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhC
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYG 65 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~ 65 (242)
..+++++.+. ...++|+....++++.+-+..++..+.
T Consensus 24 ~~v~~al~~g----~~~lViiA~D~s~~~~~ki~~~~~~~~ 60 (100)
T PRK07714 24 ELVLKEVRSG----KAKLVLLSEDASVNTTKKITDKCTYYN 60 (100)
T ss_pred HHHHHHHHhC----CceEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 4456666544 335666655556668888887766653
No 324
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=24.24 E-value=1.5e+02 Score=22.71 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHH
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQ 59 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~ 59 (242)
+.+.+++.++.++ ..+|++||.|..+=.-.++++.
T Consensus 87 Pgmv~lik~~ak~---g~~eliIVSDaNsfFIe~~Lea 121 (256)
T KOG3120|consen 87 PGMVRLIKSAAKL---GCFELIIVSDANSFFIEEILEA 121 (256)
T ss_pred ccHHHHHHHHHhC---CCceEEEEecCchhHHHHHHHH
Confidence 3455666666655 5689999999877666666664
No 325
>PF05704 Caps_synth: Capsular polysaccharide synthesis protein; InterPro: IPR008441 This entry consists of several capsular polysaccharide proteins. Capsular polysaccharide (CPS) is a major virulence factor in Streptococcus pneumoniae. This family is often transcribed with putative glycosyl transferases to give rise to bifunctional proteins [].
Probab=24.24 E-value=70 Score=25.28 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHhhhcCCCeEEEEEeCC
Q 026146 21 RLNIALIVYLIFKHLRDVDFEIIVVDDG 48 (242)
Q Consensus 21 ~~~l~~~l~sl~~~~~~~~~eiivvd~~ 48 (242)
++.++.|++|+.+.. ++++|+++|..
T Consensus 60 P~~Vk~ci~s~~k~~--~~~~Vi~lt~~ 85 (276)
T PF05704_consen 60 PEIVKKCINSWRKNA--PDYEVILLTED 85 (276)
T ss_pred CHHHHHHHHHHHHHC--CCCeEEEEChH
Confidence 456789999998886 68999999864
No 326
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=24.05 E-value=76 Score=24.45 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=17.6
Q ss_pred hHHHHHHHHhh-cCCCEEEEEeCCCC-CCCC
Q 026146 80 LGTAYIHGLKH-ASGSFVVIMDADLS-HHPK 108 (242)
Q Consensus 80 ~~~a~n~g~~~-a~~d~i~~lD~D~~-~~~~ 108 (242)
+..++..++.. ..++||+++|+|.+ .+++
T Consensus 63 K~~~lr~~m~~~P~~~wv~~lD~Dali~n~~ 93 (239)
T PF05637_consen 63 KIPALRAAMKKYPEAEWVWWLDSDALIMNPD 93 (239)
T ss_dssp HHHHHHHHHHH-TT-SEEEEE-TTEEE----
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCeEEEecc
Confidence 55566666655 57899999999988 4444
No 327
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=23.86 E-value=3.4e+02 Score=21.91 Aligned_cols=14 Identities=29% Similarity=0.430 Sum_probs=11.3
Q ss_pred CCCCcEEEEEeCcc
Q 026146 6 KNKNKYSIIIPTYN 19 (242)
Q Consensus 6 ~~~~~isiiip~~n 19 (242)
.+.|++..+-|+|.
T Consensus 67 ~~hPDl~~i~p~~~ 80 (314)
T PRK07399 67 GNHPDLLWVEPTYQ 80 (314)
T ss_pred CCCCCEEEEecccc
Confidence 46799999999864
No 328
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=23.83 E-value=1.7e+02 Score=17.35 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=21.9
Q ss_pred HHHHHhhhcCCCeEEEEEeCCCC-CChHHHHHHHHH
Q 026146 28 VYLIFKHLRDVDFEIIVVDDGSP-DGTQEVVKQLQQ 62 (242)
Q Consensus 28 l~sl~~~~~~~~~eiivvd~~s~-d~t~~~l~~~~~ 62 (242)
|+.+.+... ...++-|+|+.+. |-|..++-+..-
T Consensus 22 L~di~~lV~-~g~~~~V~D~ktgeDiT~~iL~QIi~ 56 (64)
T PF07879_consen 22 LEDIAQLVR-EGEDFKVVDAKTGEDITRSILLQIIL 56 (64)
T ss_pred HHHHHHHHH-CCCeEEEEECCCCcccHHHHHHHHHH
Confidence 444433333 3458999999874 558888887643
No 329
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=23.78 E-value=4.2e+02 Score=21.94 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=4.6
Q ss_pred CCEEEEEeCC
Q 026146 93 GSFVVIMDAD 102 (242)
Q Consensus 93 ~d~i~~lD~D 102 (242)
.|.|+=+-+-
T Consensus 84 ~D~IiavGGG 93 (380)
T cd08185 84 CDFVVGLGGG 93 (380)
T ss_pred CCEEEEeCCc
Confidence 3444444443
No 330
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=23.69 E-value=4.4e+02 Score=22.58 Aligned_cols=103 Identities=17% Similarity=0.257 Sum_probs=62.7
Q ss_pred cEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCC---cc--hHHHH
Q 026146 10 KYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKK---LG--LGTAY 84 (242)
Q Consensus 10 ~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~---~g--~~~a~ 84 (242)
.+..+..+|...+.+++.+.++= .+.+.=.|.||..|++.-...++++..-++ +|.+...... .| .-.|.
T Consensus 104 ~~a~~~~v~kd~~~verll~aiY---hPqN~ycihvD~~s~~~fk~~~~~L~~cf~--NV~v~~k~~~v~~~G~s~l~a~ 178 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIY---HPQNVYCIHVDAKSPPEFRVAMQQLASCFP--NVIVLPKRESVTYGGHSILAAH 178 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHh---CCcCcceEEECCCCCHHHHHHHHHHHhcCC--ceEEeccccceecCCchhhHHH
Confidence 57788888888888877777652 223445788899999888888888888766 6777752221 12 22222
Q ss_pred HHHHhh---cC--CCEEEEE-eCCCC-CCCCChHHHHHHH
Q 026146 85 IHGLKH---AS--GSFVVIM-DADLS-HHPKYLPSFIKKQ 117 (242)
Q Consensus 85 n~g~~~---a~--~d~i~~l-D~D~~-~~~~~l~~l~~~~ 117 (242)
-.+++. .. -+|++-+ ..|.. .+.+-+..+.+.+
T Consensus 179 l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 179 LNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred HHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 222222 12 5776666 44544 3444566666655
No 331
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=23.55 E-value=1.6e+02 Score=22.50 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=23.3
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
+.+...++..||.. +.|.|...++ |.=++++|.|..
T Consensus 4 I~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ 41 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADEN 41 (231)
T ss_pred EEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 44555555556543 7777777664 667888888865
No 332
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=23.43 E-value=4.1e+02 Score=21.70 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=46.1
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCC---CChHHHHHHHHHHhC-CCcEEEeeCCCCcchHHHHHHHHhhcCCCE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSP---DGTQEVVKQLQQLYG-EDRILLRPRPKKLGLGTAYIHGLKHASGSF 95 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~---d~t~~~l~~~~~~~~-~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~ 95 (242)
..+.+.+..+.+.+. ....|.++|-... ++..+.+..+.+..+ ...+ -++.+.|.|.+.|.-.+.-.+-.++
T Consensus 141 ~~e~l~~~a~~~~~~---Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~i-g~H~HnnlGla~ANslaAi~aGa~~ 216 (333)
T TIGR03217 141 PPEKLAEQAKLMESY---GADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQV-GFHAHHNLSLAVANSIAAIEAGATR 216 (333)
T ss_pred CHHHHHHHHHHHHhc---CCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceE-EEEeCCCCchHHHHHHHHHHhCCCE
Confidence 344444444444332 3336777766442 234455555555443 2233 3345557887777776655555554
Q ss_pred EEEEeCCCC-C----CCCChHHHHHHHHh
Q 026146 96 VVIMDADLS-H----HPKYLPSFIKKQLE 119 (242)
Q Consensus 96 i~~lD~D~~-~----~~~~l~~l~~~~~~ 119 (242)
+|+-.. + -.--++.++..++.
T Consensus 217 ---iD~Sl~G~G~~aGN~~~E~lv~~l~~ 242 (333)
T TIGR03217 217 ---IDASLRGLGAGAGNAPLEVFVAVLDR 242 (333)
T ss_pred ---EEeecccccccccCccHHHHHHHHHh
Confidence 444322 1 12235556555543
No 333
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.42 E-value=1.8e+02 Score=21.98 Aligned_cols=36 Identities=17% Similarity=0.043 Sum_probs=24.5
Q ss_pred EEEeeCCCCcchH-HHHHHHHhhcC-CCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLG-TAYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~-~a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
+.+...++..|+. .+.|.|...++ |.=++++|.|..
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4455556566654 47888887774 666899999864
No 334
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=23.39 E-value=4e+02 Score=23.01 Aligned_cols=92 Identities=14% Similarity=0.191 Sum_probs=49.5
Q ss_pred CcEEEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeCCCCC--ChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHH
Q 026146 9 NKYSIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDDGSPD--GTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIH 86 (242)
Q Consensus 9 ~~isiiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d--~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~ 86 (242)
|++-+++.. ..+.+..+++.|.....+.+ ||||-++.. +|....+.+.+ ..+.++..+-..|..+|++
T Consensus 55 ~~~Ii~mv~--~g~~v~~Vi~~l~~~l~~Gd---iiID~gn~~~~~t~~~~~~l~~----~Gi~fvdapVSGG~~gA~~- 124 (459)
T PRK09287 55 PRKILLMVK--AGAPVDAVIEQLLPLLEKGD---IIIDGGNSNYKDTIRREKELAE----KGIHFIGMGVSGGEEGALH- 124 (459)
T ss_pred CCEEEEECC--CchHHHHHHHHHHhcCCCCC---EEEECCCCCHHHHHHHHHHHHh----cCCeEEecCCCCCHHHHhc-
Confidence 444444333 23456666777665543322 667665433 45555555433 2588998887767665553
Q ss_pred HHhhcCCCEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 87 GLKHASGSFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 87 g~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
|. .+++-+|.. .-+.++.+++.+-
T Consensus 125 ------G~-siM~GG~~~-a~~~~~piL~~ia 148 (459)
T PRK09287 125 ------GP-SIMPGGQKE-AYELVAPILEKIA 148 (459)
T ss_pred ------CC-EEEEeCCHH-HHHHHHHHHHHHh
Confidence 44 666666632 1133455555543
No 335
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=22.80 E-value=2.7e+02 Score=19.23 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCC--CCcchHHHHHHHHhhc--CCCEEE
Q 026146 22 LNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRP--KKLGLGTAYIHGLKHA--SGSFVV 97 (242)
Q Consensus 22 ~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~--~~~g~~~a~n~g~~~a--~~d~i~ 97 (242)
+.+.+.|+.|.+. .+.++++.|++.+.....++.+.-..- ....+...+ ........+..+++.. +.+-++
T Consensus 80 ~~~~~~L~~l~~~----~~~~~i~Sn~~~~~~~~~l~~~~~~~~-f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~ 154 (176)
T PF13419_consen 80 PGVRELLERLKAK----GIPLVIVSNGSRERIERVLERLGLDDY-FDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEIL 154 (176)
T ss_dssp TTHHHHHHHHHHT----TSEEEEEESSEHHHHHHHHHHTTHGGG-CSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEE
T ss_pred hhhhhhhhhcccc----cceeEEeecCCcccccccccccccccc-cccccccchhhhhhhHHHHHHHHHHHcCCCcceEE
Confidence 3455666666433 457888877765444444444322210 122222211 1122345566666554 334455
Q ss_pred EEeCC
Q 026146 98 IMDAD 102 (242)
Q Consensus 98 ~lD~D 102 (242)
++|+.
T Consensus 155 ~vgD~ 159 (176)
T PF13419_consen 155 FVGDS 159 (176)
T ss_dssp EEESS
T ss_pred EEeCC
Confidence 66554
No 336
>PLN02690 Agmatine deiminase
Probab=22.71 E-value=1.5e+02 Score=24.72 Aligned_cols=34 Identities=9% Similarity=0.237 Sum_probs=23.9
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEeC
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVDD 47 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~ 47 (242)
.||+|+|+..+.=+.+++.|.+.. ++-+||=|.+
T Consensus 319 ~VivP~fgd~~~D~~A~~~l~~~f--P~r~Vv~i~~ 352 (374)
T PLN02690 319 GIVAPQFGDAKWDKEAIEVLSEAF--PNHKVVGVES 352 (374)
T ss_pred EEEEecCCCCcccHHHHHHHHHHC--CCCeEEEecC
Confidence 689999997544556777776654 5668888844
No 337
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.62 E-value=1.7e+02 Score=22.71 Aligned_cols=35 Identities=17% Similarity=0.154 Sum_probs=25.6
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
+.+. .++..||.. +.|.|...|+ |.=++++|.|-.
T Consensus 5 Iav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq 41 (270)
T PRK13185 5 LAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK 41 (270)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 3444 566777776 8888888875 666999999954
No 338
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=22.53 E-value=3.1e+02 Score=19.98 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=18.6
Q ss_pred CCeEEEEEeCCCCCChHH-HHHHHHHHhCCCcEE
Q 026146 38 VDFEIIVVDDGSPDGTQE-VVKQLQQLYGEDRIL 70 (242)
Q Consensus 38 ~~~eiivvd~~s~d~t~~-~l~~~~~~~~~~~~~ 70 (242)
....+.++ |+++++.+ ..+.+.+.+|+.++.
T Consensus 47 ~~~~vfll--G~~~~v~~~~~~~l~~~yP~l~i~ 78 (177)
T TIGR00696 47 EKLPIFLY--GGKPDVLQQLKVKLIKEYPKLKIV 78 (177)
T ss_pred cCCeEEEE--CCCHHHHHHHHHHHHHHCCCCEEE
Confidence 34678888 66655544 444667778754444
No 339
>PRK13236 nitrogenase reductase; Reviewed
Probab=22.46 E-value=1.8e+02 Score=23.12 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.6
Q ss_pred eCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 73 PRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 73 ~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
.-++..||.. +.|.|...++ |.=|+++|.|...
T Consensus 12 ~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~ 46 (296)
T PRK13236 12 YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKA 46 (296)
T ss_pred ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCC
Confidence 4455566655 8888888875 7779999999774
No 340
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=22.44 E-value=2.2e+02 Score=18.09 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=31.7
Q ss_pred CcEEEEEeCc--c-ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHH
Q 026146 9 NKYSIIIPTY--N-ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQE 55 (242)
Q Consensus 9 ~~isiiip~~--n-~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~ 55 (242)
..+.|-|-+- + -.+.+++.+....+...-.+..|.+-|.|-.|.+..
T Consensus 26 ~gi~i~l~S~v~~~fg~~i~~vi~~~l~~~~i~~~~v~i~D~GAld~vi~ 75 (87)
T PF06857_consen 26 GGIEIELESSVVKQFGDQIRAVIRETLEELGIEDAKVEINDKGALDCVIR 75 (87)
T ss_pred CcEEEEEEchHHhhhHHHHHHHHHHHHHhcCCCceEEEEEeCCCCHHHHH
Confidence 3455544443 2 346677888887777555678899999999887653
No 341
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=21.95 E-value=2e+02 Score=17.54 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=37.5
Q ss_pred eEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCCC
Q 026146 40 FEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDADL 103 (242)
Q Consensus 40 ~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D~ 103 (242)
.++.++-..|.|. +++....+.+. +..++-..+.|...|+-..++..+..+-+.+-.|.
T Consensus 10 ~~~~~lvS~s~DG--e~ia~~~~~~G---~~~iRGSs~rgg~~Alr~~~~~lk~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRDG--ELIARVLERFG---FRTIRGSSSRGGARALREMLRALKEGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcCH--HHHHHHHHHcC---CCeEEeCCCCcHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 3566666667664 34444444443 66666666778888888888888755555555554
No 342
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=21.88 E-value=3.5e+02 Score=25.24 Aligned_cols=84 Identities=12% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEeCCCCC--ChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCEEEEEeCC
Q 026146 25 ALIVYLIFKHLRDVDFEIIVVDDGSPD--GTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSFVVIMDAD 102 (242)
Q Consensus 25 ~~~l~sl~~~~~~~~~eiivvd~~s~d--~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~lD~D 102 (242)
..+|.-|........|+..=+ |||+. +-.+.++.+.+.. .....++-...-.| .|+..+.+|.|++.|+|
T Consensus 497 t~mLDILeDyc~~R~y~ycRi-DGSt~~eeR~~aI~~fn~~~-s~~FiFlLSTRAGG------LGINL~aADtVIlyDSD 568 (971)
T KOG0385|consen 497 TRMLDILEDYCMLRGYEYCRL-DGSTSHEEREDAIEAFNAPP-SEKFIFLLSTRAGG------LGINLTAADTVILYDSD 568 (971)
T ss_pred HHHHHHHHHHHHhcCceeEee-cCCCCcHHHHHHHHhcCCCC-cceEEEEEeccccc------cccccccccEEEEecCC
Confidence 344444443333356665555 55543 3344455554432 12344444443334 35788899999999999
Q ss_pred CCCCCCChHHHHHHH
Q 026146 103 LSHHPKYLPSFIKKQ 117 (242)
Q Consensus 103 ~~~~~~~l~~l~~~~ 117 (242)
=-+.. .|+.+-++.
T Consensus 569 WNPQ~-DLQAmDRaH 582 (971)
T KOG0385|consen 569 WNPQV-DLQAMDRAH 582 (971)
T ss_pred CCchh-hhHHHHHHH
Confidence 43332 244444433
No 343
>COG0804 UreC Urea amidohydrolase (urease) alpha subunit [Amino acid transport and metabolism]
Probab=21.85 E-value=5.1e+02 Score=22.11 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcC-CCEEEE
Q 026146 20 ERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHAS-GSFVVI 98 (242)
Q Consensus 20 ~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~-~d~i~~ 98 (242)
...++.+.|++.... +..+=+.--|.......+.++..+.. ..+++. +.+..-.+|.+.++.-|. .|.=+-
T Consensus 174 G~w~i~rMl~a~d~~----p~N~g~lgKGn~s~~~~L~Eqi~aGa--~GlKlH--EDWG~TpaaI~~~L~VAD~~DvqVa 245 (568)
T COG0804 174 GPWHIARMLQAADGL----PMNIGFLGKGNASNPAPLAEQIEAGA--IGLKLH--EDWGATPAAIDTCLSVADEYDVQVA 245 (568)
T ss_pred CHHHHHHHHHhhhcC----ceeeEEeecCCCCCchhHHHHHhhcc--ceeEee--cccCCCHHHHHHHHhhhhhhceEEE
Confidence 345677777776433 34555554444444444455554321 123333 223347889999999996 799999
Q ss_pred EeCCCCCCCCChHHHHHHHH
Q 026146 99 MDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 99 lD~D~~~~~~~l~~l~~~~~ 118 (242)
++.|..=..+|++.-+.++.
T Consensus 246 iHtDTLNEsGfvEdTi~A~~ 265 (568)
T COG0804 246 IHTDTLNESGFVEDTIAAIK 265 (568)
T ss_pred EeecccccccchHhHHHHhc
Confidence 99999999999999999985
No 344
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=21.68 E-value=3.1e+02 Score=19.54 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=21.5
Q ss_pred CCEEEEEeCCCC-CCCCChHHHHHHHHhcC
Q 026146 93 GSFVVIMDADLS-HHPKYLPSFIKKQLETG 121 (242)
Q Consensus 93 ~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~ 121 (242)
.++++.||.... ++..-+.+.++.....+
T Consensus 65 ~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g 94 (153)
T TIGR00246 65 KAHVVTLDIPGKPWTTPQLADTLEKWKTDG 94 (153)
T ss_pred CCeEEEEcCCCCcCCHHHHHHHHHHHhccC
Confidence 489999999877 77777777777655443
No 345
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.53 E-value=3e+02 Score=23.24 Aligned_cols=106 Identities=9% Similarity=0.051 Sum_probs=57.1
Q ss_pred CccccccHHHHHHHHHhhhcCCCeEEEEEeCCC-C----CChHHHHHHHHHHhC---CCcEEEeeCCCCcc-----hHHH
Q 026146 17 TYNERLNIALIVYLIFKHLRDVDFEIIVVDDGS-P----DGTQEVVKQLQQLYG---EDRILLRPRPKKLG-----LGTA 83 (242)
Q Consensus 17 ~~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-~----d~t~~~l~~~~~~~~---~~~~~~~~~~~~~g-----~~~a 83 (242)
+|..++.|.+.|..+.+... + ++|+|-.++ + |+...+++++.+++| +.++..++.+.-.| ...|
T Consensus 62 VfGg~~~L~~~i~~~~~~~~-p--~~I~V~ttc~~eiIGdDi~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~~~~G~~~a 138 (417)
T cd01966 62 ILGGGENLEEALDTLAERAK-P--KVIGLLSTGLTETRGEDIAGALKQFRAEHPELADVPVVYVSTPDFEGSLEDGWAAA 138 (417)
T ss_pred EECCHHHHHHHHHHHHHhcC-C--CEEEEECCCcccccccCHHHHHHHHHhhccccCCCeEEEecCCCCCCcHHHHHHHH
Confidence 35667888888888876643 3 445554444 3 466777777766643 34566666554332 2222
Q ss_pred HHHHHhhc--------C-CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEE
Q 026146 84 YIHGLKHA--------S-GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVT 126 (242)
Q Consensus 84 ~n~g~~~a--------~-~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 126 (242)
...-+++- . ..-|-++ +.....+..+.++.+.+++-+..++.
T Consensus 139 ~~al~~~l~~~~~~~~~~~~~VNii-g~~~~~~~D~~eik~lL~~~Gl~v~~ 189 (417)
T cd01966 139 VEAIIEALVEPGSRTVTDPRQVNLL-PGAHLTPGDVEELKDIIEAFGLEPII 189 (417)
T ss_pred HHHHHHHhcccccccCCCCCcEEEE-CCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 22222210 1 1123333 22233466677777777776766654
No 346
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=21.36 E-value=2.3e+02 Score=19.99 Aligned_cols=31 Identities=35% Similarity=0.355 Sum_probs=15.0
Q ss_pred eCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCC
Q 026146 73 PRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADL 103 (242)
Q Consensus 73 ~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~ 103 (242)
..++..|+.. +.|.|...++ |.=++++|.|.
T Consensus 6 ~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~ 38 (179)
T cd02036 6 SGKGGVGKTTTTANLGTALAQLGYKVVLIDADL 38 (179)
T ss_pred eCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3334444332 5555555543 44466666664
No 347
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.07 E-value=2.4e+02 Score=18.07 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=28.2
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEeCCC--CCChHHHHHHHHHHhCCCcEEEee
Q 026146 24 IALIVYLIFKHLRDVDFEIIVVDDGS--PDGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 24 l~~~l~sl~~~~~~~~~eiivvd~~s--~d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
+.+.|+.+.+... .++++.+.-|++ ++++.+.++++++-.+ .+.+..
T Consensus 6 ~~~qL~~~f~~l~-~pV~l~~f~~~~~~~~e~~~ll~e~a~lSd--kI~~~~ 54 (94)
T cd02974 6 LKQQLKAYLERLE-NPVELVASLDDSEKSAELLELLEEIASLSD--KITLEE 54 (94)
T ss_pred HHHHHHHHHHhCC-CCEEEEEEeCCCcchHHHHHHHHHHHHhCC--ceEEEE
Confidence 5566666665543 577876665543 3356777777766544 555543
No 348
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=21.05 E-value=3.7e+02 Score=20.25 Aligned_cols=80 Identities=16% Similarity=0.079 Sum_probs=44.6
Q ss_pred cccccHHHHHHHHHhhhcCCCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEeeCCCCc--chHHHHHHHHhhcCCCEE
Q 026146 19 NERLNIALIVYLIFKHLRDVDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRPRPKKL--GLGTAYIHGLKHASGSFV 96 (242)
Q Consensus 19 n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~~~~~~--g~~~a~n~g~~~a~~d~i 96 (242)
|..+.+++.++.|.+. .-.+|+||-.= ..+..+-+.+++ .++++-++.-. .--.++-.+-..-...|
T Consensus 29 ~g~plIErqI~~L~e~---gI~dI~IVvGY----lkE~FeYLkdKy---~vtLvyN~kY~~yNn~ySlyla~d~l~ntY- 97 (231)
T COG4750 29 NGEPLIERQIEQLREA---GIDDITIVVGY----LKEQFEYLKDKY---DVTLVYNPKYREYNNIYSLYLARDFLNNTY- 97 (231)
T ss_pred cCcccHHHHHHHHHHC---CCceEEEEeee----hHHHHHHHHHhc---CeEEEeCchHHhhhhHHHHHHHHHHhcccE-
Confidence 6678899999998654 33466666542 233344444444 47777766321 12223333334444555
Q ss_pred EEEeCCCCCCCCCh
Q 026146 97 VIMDADLSHHPKYL 110 (242)
Q Consensus 97 ~~lD~D~~~~~~~l 110 (242)
++|+|..+..+.+
T Consensus 98 -iidsDnyl~kNif 110 (231)
T COG4750 98 -IIDSDNYLTKNIF 110 (231)
T ss_pred -EeccchHhhhhhh
Confidence 4688876665543
No 349
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=21.04 E-value=2e+02 Score=22.93 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=24.1
Q ss_pred CCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 74 RPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 74 ~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
.++..|+.. +.|.|...++ |.=|+++|.|-.
T Consensus 11 ~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 566667766 8898888875 677999999875
No 350
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=21.00 E-value=3.8e+02 Score=20.30 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHhCCCcEEEeeCCCCcchHHHHHHHHhhcCCCE
Q 026146 53 TQEVVKQLQQLYGEDRILLRPRPKKLGLGTAYIHGLKHASGSF 95 (242)
Q Consensus 53 t~~~l~~~~~~~~~~~~~~~~~~~~~g~~~a~n~g~~~a~~d~ 95 (242)
..++++.+.+..|...+.+.. +.+.|.+.|.-.+.-.+-.++
T Consensus 168 v~~lv~~~~~~~~~~~l~~H~-Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 168 VAELVRALREALPDIPLGFHA-HNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp HHHHHHHHHHHSTTSEEEEEE-BBTTS-HHHHHHHHHHTT-SE
T ss_pred HHHHHHHHHHhccCCeEEEEe-cCCccchhHHHHHHHHcCCCE
Confidence 334444444444433333322 224455444444333333333
No 351
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=20.92 E-value=5e+02 Score=21.74 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=15.9
Q ss_pred CEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEE
Q 026146 94 SFVVIMDADLSHHPKYLPSFIKKQLETGASIVTG 127 (242)
Q Consensus 94 d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~ 127 (242)
+|.+|-+.--.++.+.++...+.+++.+.|.+++
T Consensus 59 ~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 59 EYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred eEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4444433333344444555555555555555443
No 352
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=20.79 E-value=4.5e+02 Score=21.25 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=6.9
Q ss_pred HHHHHhhcCCCEEEEEe
Q 026146 84 YIHGLKHASGSFVVIMD 100 (242)
Q Consensus 84 ~n~g~~~a~~d~i~~lD 100 (242)
+-..+..+--+..++.|
T Consensus 162 ~ak~L~~~gI~~~~I~D 178 (301)
T COG1184 162 MAKELRQSGIPVTVIVD 178 (301)
T ss_pred HHHHHHHcCCceEEEec
Confidence 33333333334444444
No 353
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=20.78 E-value=1.9e+02 Score=22.26 Aligned_cols=36 Identities=22% Similarity=0.189 Sum_probs=26.0
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
+.+. .++..||.. +.|.|...++ |.=|+++|.|...
T Consensus 4 iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq~ 41 (270)
T cd02040 4 IAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPKA 41 (270)
T ss_pred EEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCCC
Confidence 4455 566677765 8888887775 6679999999763
No 354
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.75 E-value=3.3e+02 Score=23.20 Aligned_cols=104 Identities=12% Similarity=0.117 Sum_probs=56.1
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCC-C----CChHHHHHHHHHHhC---CCcEEEeeCCCCcc-hHHHHHHH-
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGS-P----DGTQEVVKQLQQLYG---EDRILLRPRPKKLG-LGTAYIHG- 87 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-~----d~t~~~l~~~~~~~~---~~~~~~~~~~~~~g-~~~a~n~g- 87 (242)
|...+.|.+.|..+.+... + ++|+|-..+ + |+...+++++.+++| +..+..+..+.-.| ...++..+
T Consensus 73 fGg~~~L~~~I~~~~~~~~-P--~~I~V~ttC~~eiIGDDi~~v~~~~~~e~p~~~~~pvi~v~tpgf~g~~~~G~~~a~ 149 (432)
T TIGR01285 73 LGGDEHIEEAIDTLCQRNK-P--KAIGLLSTGLTETRGEDIARVVRQFREKHPQHKGTAVVTVNTPDFKGSLEDGYAAAV 149 (432)
T ss_pred ECcHHHHHHHHHHHHHhcC-C--CEEEEeCCCcccccccCHHHHHHHHHhhcccccCCeEEEecCCCcCCchHHHHHHHH
Confidence 5556788888888876632 2 455555544 3 567777887766543 23555565543332 22222222
Q ss_pred ---Hhh-cC--------CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEE
Q 026146 88 ---LKH-AS--------GSFVVIMDADLSHHPKYLPSFIKKQLETGASIV 125 (242)
Q Consensus 88 ---~~~-a~--------~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v 125 (242)
++. .. ..-|-++-. ..+.++.+.++.+.+++-+..++
T Consensus 150 ~al~~~~~~~~~~~~~~~~~VNiig~-~~~~~~d~~elk~lL~~~Gl~~~ 198 (432)
T TIGR01285 150 ESIIEAWVPPAPARAQRNRRVNLLVG-SLLTPGDIEELRRMVEAFGLKPI 198 (432)
T ss_pred HHHHHHHcccccccCCCCCeEEEEcC-CCCCccCHHHHHHHHHHcCCceE
Confidence 211 11 122444422 23445667777777776666654
No 355
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=20.50 E-value=4.3e+02 Score=22.64 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=35.6
Q ss_pred ccccccHHHHHHHHHhhhcCCCeEEEEEeCCC-C----CChHHHHHHHHHHhCCCcEEEeeCCCC
Q 026146 18 YNERLNIALIVYLIFKHLRDVDFEIIVVDDGS-P----DGTQEVVKQLQQLYGEDRILLRPRPKK 77 (242)
Q Consensus 18 ~n~~~~l~~~l~sl~~~~~~~~~eiivvd~~s-~----d~t~~~l~~~~~~~~~~~~~~~~~~~~ 77 (242)
|..++.|.+.|..+.+... + ++|+|-..+ + |+...+++++..+.+ ..+..+..+.-
T Consensus 103 fGg~~kL~~~I~e~~~~~~-P--~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~-~~vi~v~t~gf 163 (456)
T TIGR01283 103 FGGEKKLFHAIREIVERYH-P--PAVFVYSTCVPGLIGDDLEAVCKAAAEKTG-IPVIPVDSEGF 163 (456)
T ss_pred eCCHHHHHHHHHHHHHhCC-C--CEEEEECCChHHHhcCCHHHHHHHHHHHhC-CCEEEEECCCC
Confidence 5667788888888877643 3 445554544 2 567777777765543 56777776543
No 356
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=20.47 E-value=1.8e+02 Score=22.76 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=30.8
Q ss_pred CCcchHHHHHHHHhhc---CCCEEEEEeCCCCCCCCChHHHHHHHH
Q 026146 76 KKLGLGTAYIHGLKHA---SGSFVVIMDADLSHHPKYLPSFIKKQL 118 (242)
Q Consensus 76 ~~~g~~~a~n~g~~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~~ 118 (242)
+..|-..+.-..++.+ ..+|++++.||..+..++.+.+-....
T Consensus 67 gEiGC~lSH~~lw~~~~~~~~~yi~I~EDDV~l~~~f~~~l~~~~~ 112 (255)
T COG3306 67 GEIGCYLSHLKLWKKALEENLPYILILEDDVVLGEDFEEFLEDDLK 112 (255)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCeEEEecccccccccHHHHHHHHHh
Confidence 3445555555566655 358999999999999998877766554
No 357
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=20.34 E-value=4.2e+02 Score=21.92 Aligned_cols=12 Identities=8% Similarity=0.124 Sum_probs=5.9
Q ss_pred CCEEEEEeCCCC
Q 026146 93 GSFVVIMDADLS 104 (242)
Q Consensus 93 ~d~i~~lD~D~~ 104 (242)
.|.|+=+-+-..
T Consensus 76 ~D~IIaiGGGS~ 87 (374)
T cd08183 76 CDVVIAIGGGSV 87 (374)
T ss_pred CCEEEEecCchH
Confidence 455555554433
No 358
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=20.28 E-value=2.4e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=26.5
Q ss_pred EEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCCC
Q 026146 69 ILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLSH 105 (242)
Q Consensus 69 ~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~~ 105 (242)
+.+....+.-|+.. +.|.|...|. |.-++++|.|..-
T Consensus 106 i~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~ 144 (274)
T TIGR03029 106 LAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRD 144 (274)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 33444445567655 8999998886 7789999999653
No 359
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=20.20 E-value=3.2e+02 Score=19.72 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCCCcEEEee
Q 026146 38 VDFEIIVVDDGSPDGTQEVVKQLQQLYGEDRILLRP 73 (242)
Q Consensus 38 ~~~eiivvd~~s~d~t~~~l~~~~~~~~~~~~~~~~ 73 (242)
...+++++-|+..--+.+.++++......+.+-++.
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt 65 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVT 65 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEE
Confidence 455788887766555677777776654333333333
No 360
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=20.15 E-value=4.3e+02 Score=21.24 Aligned_cols=37 Identities=24% Similarity=0.159 Sum_probs=26.3
Q ss_pred cEEEeeCCCCcchHH-HHHHHHhhcC-CCEEEEEeCCCC
Q 026146 68 RILLRPRPKKLGLGT-AYIHGLKHAS-GSFVVIMDADLS 104 (242)
Q Consensus 68 ~~~~~~~~~~~g~~~-a~n~g~~~a~-~d~i~~lD~D~~ 104 (242)
.+.+...++..|+.. +.|.|...++ +.=++++|.|..
T Consensus 95 vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~ 133 (322)
T TIGR03815 95 VVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPW 133 (322)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 345555566667655 8888888775 556999999865
No 361
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.13 E-value=1.7e+02 Score=25.52 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=33.7
Q ss_pred CCEEEEEeCCCCCCCCChHHHHHHHHhcCCcEEEEEEEee
Q 026146 93 GSFVVIMDADLSHHPKYLPSFIKKQLETGASIVTGTRYVR 132 (242)
Q Consensus 93 ~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~ 132 (242)
+--+..+|.|..-..+.+++.++.+.+++.++++|+....
T Consensus 284 ~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~ 323 (505)
T TIGR00595 284 GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIA 323 (505)
T ss_pred CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccc
Confidence 4468899999988889999999999988899999866543
No 362
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=45 Score=26.84 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=15.0
Q ss_pred ccCCCCcEEEEEeCcccc
Q 026146 4 TNKNKNKYSIIIPTYNER 21 (242)
Q Consensus 4 ~~~~~~~isiiip~~n~~ 21 (242)
+..++|.++.|||+|.++
T Consensus 410 ~~anKp~~deIvPvYRRd 427 (469)
T KOG3878|consen 410 TAANKPPIDEIVPVYRRD 427 (469)
T ss_pred CCCCCCCcccccchhhhh
Confidence 346789999999999875
No 363
>PF04371 PAD_porph: Porphyromonas-type peptidyl-arginine deiminase; InterPro: IPR007466 Peptidyl-arginine deiminase (PAD) enzymes catalyse the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (Bacteroides gingivalis) (PPAD) appears to be evolutionarily unrelated to mammalian PAD (IPR004303 from INTERPRO), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs) []. The predicted catalytic residues in PPAD (Q9RQJ2 from SWISSPROT) are Asp130, Asp187, His236, Asp238 and Cys351 []. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyse the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor [].; PDB: 2Q3U_A 1VKP_A 3H7C_X 3H7K_A 2EWO_K 1ZBR_B 1XKN_A 2JER_B 3HVM_A 2CMU_A.
Probab=20.02 E-value=2.1e+02 Score=23.32 Aligned_cols=32 Identities=13% Similarity=0.378 Sum_probs=19.2
Q ss_pred EEEEeCccccccHHHHHHHHHhhhcCCCeEEEEEe
Q 026146 12 SIIIPTYNERLNIALIVYLIFKHLRDVDFEIIVVD 46 (242)
Q Consensus 12 siiip~~n~~~~l~~~l~sl~~~~~~~~~eiivvd 46 (242)
.|++|.|+.. .=..+++.+.+.. ++.+||-|+
T Consensus 279 ~VivP~fg~~-~D~~Al~~l~~~f--P~r~Vv~i~ 310 (329)
T PF04371_consen 279 AVIVPVFGDP-ADEAALEILQEAF--PDRKVVGID 310 (329)
T ss_dssp EEEEEE-SST-THHHHHHHHHHHS--TTSEEEEEE
T ss_pred EEEEccCCCh-HHHHHHHHHHHHC--CCCEEEEEe
Confidence 4778888765 4455666665554 455777664
Done!