BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026147
         (242 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P37506|YYAR_BACSU Uncharacterized protein YyaR OS=Bacillus subtilis (strain 168)
           GN=yyaR PE=4 SV=1
          Length = 173

 Score = 32.7 bits (73), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 197 RRGPNRYGYIANLCVAKSARRQGIASNMLYFAVESAKSN 235
           R   N Y  I ++ VAK  R++G+ + +L+ A+E AK N
Sbjct: 83  RSNWNGYALIEDIAVAKDYRKKGVGTALLHKAIEWAKEN 121


>sp|P87137|YDM6_SCHPO Uncharacterized protein C57A7.06 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC57A7.06 PE=1 SV=1
          Length = 929

 Score = 32.0 bits (71), Expect = 3.6,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 16/108 (14%)

Query: 5   LVQRPAVLKFHRDGGFRNHRKFSRISATWTMRMDSKSSRTTKK--EDLSIVSIPQRSNDL 62
           + +R   L+F R+  FR  RK  R++     ++ SK+ R  +K  ++  +  IP+   DL
Sbjct: 426 VAERTRQLRFMRELMFREERKAKRVA-----KIKSKTYRKIRKNRKEKEMALIPKSEEDL 480

Query: 63  RFDRLQPSDRELLQHDRFEFGKFVAREALLDEEYWTAAWLRAESHWEG 110
             +R++  +   L+       +   R    +   WT   L   SH EG
Sbjct: 481 ENERIKSEEARALE-------RMTQRHK--NTSSWTRKMLERASHGEG 519


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,425,802
Number of Sequences: 539616
Number of extensions: 3426059
Number of successful extensions: 6258
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6257
Number of HSP's gapped (non-prelim): 3
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)