BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026149
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPN 197
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 60
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 61 HVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 101
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 197
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFAFVLGGG 156
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 197
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 29 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 80
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 81 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 121
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 13 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 64
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 65 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 105
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +FDS+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFDSSKDRND------PFEFVLGGG 156
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 197
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L G +F S+ D D PF F+LG G
Sbjct: 105 GLKYEDLTEGSGAEARAGQTVSVHYTGWLT--DGQKFGSSKDRND------PFAFVLGGG 156
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP GY + IPPN
Sbjct: 157 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPN 197
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+K DL G G G V++HY G L Q +FDS+ D D PF F+LG G
Sbjct: 9 GLKYEDLTEGSGAEARAGQTVSVHYTGWLTDGQ--KFDSSKDRND------PFAFVLGGG 60
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPS-QGYQNTSQEPIPPN 203
VI G + V+ MKVGG+ R+ IPP + IPPN
Sbjct: 61 MVIKGWDEGVQGMKVGGVRRLTIPPQLGYGAGGAGGVIPPN 101
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+LA G +FDS++D + PF+F +G
Sbjct: 32 GVLKIVKRVGHGEETPMIGDRVYVHYNGKLA--NGKKFDSSHDRNE------PFVFSIGK 83
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y T P IP N FF+ + L
Sbjct: 84 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELL 135
>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, Minimized Average Structure
pdb|1ROU|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda
Fk506-Binding Protein, Nmr, 22 Structures
Length = 149
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 31 GVLKVIKREGTGTETPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 82
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
G+VI + AV +MKVG +CR+ P Y + P IPPN
Sbjct: 83 GEVIKAWDIAVATMKVGELCRITCKPEYAYGSAGSPPKIPPN 124
>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi
pdb|3O5F|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vii
Length = 144
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y + P IP N FF+ + L
Sbjct: 88 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 13/108 (12%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 32 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 83
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFD 206
G+VI + V +MK G IC ++ P Y + P IP N FF+
Sbjct: 84 GQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPKIPSNATLFFE 131
>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRH|D Chain D, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor At Low Ph
pdb|4DRI|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y + P IP N FF+ + L
Sbjct: 88 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I
pdb|3O5M|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5M|B Chain B, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Ii
pdb|3O5O|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iii
pdb|3O5P|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv
pdb|3O5Q|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form Iv, In
Presence Of Dmso
pdb|3O5R|A Chain A, Complex Of Fk506 With The Fk1 Domain Mutant A19t Of Fkbp51
pdb|4DRQ|A Chain A, Exploration Of Pipecolate Sulfonamides As Binders Of The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-1-((S)-1-(3,5-
Dichlorophenylsulfonyl)piperidine-2-Carbonyloxy)-3-(3,
4-Dimethoxy - Phenyl)propyl)phenoxy)acetic Acid
pdb|4DRK|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRK|B Chain B, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-(3,
3-Dimethyl-2-Oxopentanoyl)piperidin-2-Yl]carbonyl}oxy)
Propyl]phenoxy}acetic Acid
pdb|4DRM|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRN|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
{3-[(1r)-3-(3,4-Dimethoxyphenyl)-1-
({[(2s)-1-{[(1s,2r)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidin-2-Yl]carbonyl}oxy)propyl]phenoxy}acetic
Acid
pdb|4DRO|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For
Fkbp51 And Fkbp52: Complex Of Fkbp51 With
(1r)-3-(3,4-Dimethoxyphenyl)-1- Phenylpropyl
(2s)-1-{[(1r,2s)-2-Ethyl-1-Hydroxycyclohexyl](Oxo)
Acetyl}piperidine-2-Carboxylate
pdb|4DRP|A Chain A, Evaluation Of Synthetic Fk506 Analogs As Ligands For The
Fk506-Binding Proteins 51 And 52: Complex Of Fkbp51 With
2-(3-((R)-3-(3,4-
Dimethoxyphenyl)-1-((S)-1-(2-((1r,
2s)-2-Ethyl-1-Hydroxy-Cyclohexyl)-
2-Oxoacetyl)piperidine-2-
Carbonyloxy)propyl)phenoxy)acetic Acid From
Cocrystallization
Length = 128
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 71
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y + P IP N FF+ + L
Sbjct: 72 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I
pdb|3O5I|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5I|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Ii
pdb|3O5J|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Iii
pdb|3O5K|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|B Chain B, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|C Chain C, Fk1 Domain Of Fkbp51, Crystal Form Viii
pdb|3O5K|D Chain D, Fk1 Domain Of Fkbp51, Crystal Form Viii
Length = 128
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 20 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 71
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y + P IP N FF+ + L
Sbjct: 72 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 123
>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
pdb|3O5D|B Chain B, Crystal Structure Of A Fragment Of Fkbp51 Comprising The
Fk1 And Fk2 Domains
Length = 264
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 13/112 (11%)
Query: 104 GVKALDLRLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R+G G P+ GD+V +HY G+L+ G +FDS++D + PF+F LG
Sbjct: 36 GVLKIVKRVGNGEETPMIGDKVYVHYKGKLS--NGKKFDSSHDRNE------PFVFSLGK 87
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN---FFDRQRL 210
G+VI + V +MK G IC ++ P Y + P IP N FF+ + L
Sbjct: 88 GQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIELL 139
>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
pdb|1N1A|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52
Length = 140
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 32 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 83
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
G+VI + A+ +MKVG +C + P Y + P IPPN
Sbjct: 84 GEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPN 125
>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52,
Rapamycin And The Frb Fragment Of Mtor
Length = 144
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 36 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 87
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
G+VI + A+ +MKVG +C + P Y + P IPPN
Sbjct: 88 GEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPN 129
>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52
Length = 280
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 10/102 (9%)
Query: 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV + R G G +P+ GD+V +HY G L G +FDS+ D KD+ F F LG
Sbjct: 52 GVLKVIKREGTGTEMPMIGDRVFVHYTGWLL--DGTKFDSSLDRKDK------FSFDLGK 103
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
G+VI + A+ +MKVG +C + P Y + P IPPN
Sbjct: 104 GEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPN 145
>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506
Binding Domain From Plasmodium Vivax
pdb|3IHZ|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3IHZ|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35 In Complex With Fk506
pdb|3NI6|A Chain A, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3NI6|B Chain B, Crystal Structure Of The Fk506 Binding Domain Of
Plasmodium Vivax Fkbp35
pdb|3PA7|A Chain A, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
pdb|3PA7|B Chain B, Crystal Structure Of Fkbp From Plasmodium Vivax In Complex
With Tetrapeptide Alpf
Length = 126
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 63/152 (41%), Gaps = 36/152 (23%)
Query: 95 ELLELPNSGGVKALDLRLGRG---PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E + L GGV LR G G P G++V +HY G+L + G FDS+ +
Sbjct: 7 EQVHLTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLES-SGKVFDSSRERN---- 61
Query: 152 EPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGY-QNTSQEPIPPNFFDRQRL 210
+PF F LG G+VI G + V SM C V + GY + E IP N
Sbjct: 62 --VPFKFHLGQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGESIPGN------- 112
Query: 211 FTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242
LIF+IEL+S R
Sbjct: 113 ------------------SVLIFEIELISFRE 126
>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
pdb|2VN1|B Chain B, Crystal Structure Of The Fk506-Binding Domain Of
Plasmodium Falciparum Fkbp35 In Complex With Fk506
Length = 129
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 36/152 (23%)
Query: 95 ELLELPNSGGVKALDLRLG---RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E +EL GGV L+ G +P G++V +HY G+L + G FDS++D
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES-TGKVFDSSFDRN---- 62
Query: 152 EPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNT-SQEPIPPNFFDRQRL 210
+PF F L G+VI G + V SM+ C V I GY + E IP N
Sbjct: 63 --VPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGN------- 113
Query: 211 FTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242
L+F+IEL+S R
Sbjct: 114 ------------------SVLLFEIELLSFRE 127
>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35
From Plasmodium Falciparum
Length = 135
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 65/152 (42%), Gaps = 36/152 (23%)
Query: 95 ELLELPNSGGVKALDLRLG---RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG 151
E +EL GGV L+ G +P G++V +HY G+L + G FDS++D
Sbjct: 8 EKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLES-TGKVFDSSFDRN---- 62
Query: 152 EPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNT-SQEPIPPNFFDRQRL 210
+PF F L G+VI G + V SM+ C V I GY + E IP N
Sbjct: 63 --VPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGN------- 113
Query: 211 FTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242
L+F+IEL+S R
Sbjct: 114 ------------------SVLLFEIELLSFRE 127
>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 356
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P GD+V +HY G L G +FDS+ D D F F LG G+VI G + +++MK
Sbjct: 27 PEVGDEVEVHYTGTLL--DGKKFDSSRDRDDT------FKFKLGQGQVIKGWDQGIKTMK 78
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
G IPP Y + P IP N TL FD+E
Sbjct: 79 KGENALFTIPPELAYGESGSPPTIPAN-------------------------ATLQFDVE 113
Query: 237 LVS 239
L+S
Sbjct: 114 LLS 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P +G V + G+L D T K E PF F VI G++ AV +MK
Sbjct: 260 PNEGAVVTVKITGKLQ-------DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMK 312
Query: 178 VGGICRVVIPPSQGYQNTSQEP---IPPN 203
G + V IPP Y +T + +PPN
Sbjct: 313 KGEVALVTIPPEYAYGSTESKQDAIVPPN 341
>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
pdb|3JYM|B Chain B, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73
Length = 377
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 34/123 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P GD+V +HY G L G +FDS+ D D F F LG G+VI G + +++MK
Sbjct: 43 PEVGDEVEVHYTGTLL--DGKKFDSSRDRDDT------FKFKLGQGQVIKGWDQGIKTMK 94
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
G IPP Y + P IP N TL FD+E
Sbjct: 95 KGENALFTIPPELAYGESGSPPTIPAN-------------------------ATLQFDVE 129
Query: 237 LVS 239
L+S
Sbjct: 130 LLS 132
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P +G V + G+L D T K E PF F VI G++ AV +MK
Sbjct: 276 PNEGAVVTVKITGKLQ-------DGTVFLKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMK 328
Query: 178 VGGICRVVIPPSQGYQNTSQEP---IPPN 203
G + V IPP Y +T + +PPN
Sbjct: 329 KGEVALVTIPPEYAYGSTESKQDAIVPPN 357
>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl
Isomerase
Length = 135
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 101 NSGGVKALDLRLGRGPV-PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFI 159
GGV L + G+G V P G V +HY G L + G +FDS+ D DQ F F
Sbjct: 12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTL--ENGTKFDSSRDRGDQ------FSFN 63
Query: 160 LGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEPIPP 202
LG G VI G + V +M G + I GY + P P
Sbjct: 64 LGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIP 106
>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding
Protein
pdb|1FKL|A Chain A, Atomic Structure Of Fkbp12-Rapaymycin, An Immunophilin-
Immunosuppressant Complex
Length = 107
Score = 50.8 bits (120), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFVLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPPN TLIFD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPN-------------------------ATLIFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 30/122 (24%)
Query: 121 GDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGG 180
GD + +HY G L K G F ST HK +G+PI F LG + + G + ++ M VG
Sbjct: 32 GDLMLVHYEGYLE-KDGSLFHST--HKHNNGQPI--WFTLGILEALKGWDQGLKGMCVGE 86
Query: 181 ICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSL 240
+++IPP+ GY + IPP TLIF+I+L+ +
Sbjct: 87 KRKLIIPPALGYGKEGKGKIPPE-------------------------STLIFNIDLLEI 121
Query: 241 RH 242
R+
Sbjct: 122 RN 123
>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin
Length = 107
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G+E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGLEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin
Length = 107
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGFEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 107
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKAGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp-
12 Complex
pdb|1FKG|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKH|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
pdb|1FKI|A Chain A, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
pdb|1FKI|B Chain B, Design, Synthesis, And Kinetic Evaluation Of High-Affinity
Fkbp Ligands, And The X-Ray Crystal Structures Of Their
Complexes With Fkbp12
Length = 107
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin
Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin
pdb|3MDY|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 109
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 18 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 69
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 70 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 104
Query: 237 LVSLR 241
L+ L
Sbjct: 105 LLKLE 109
>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With
Huma
pdb|1B6C|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|E Chain E, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|G Chain G, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1QPF|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPF|D Chain D, Fk506 Binding Protein (12 Kda, Human) Complex With
L-709,858
pdb|1QPL|A Chain A, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1QPL|C Chain C, Fk506 Binding Protein (12 Kda, Human) Complex With
L-707,587
pdb|1D6O|A Chain A, Native Fkbp
pdb|1D6O|B Chain B, Native Fkbp
pdb|1D7H|A Chain A, Fkbp Complexed With Dmso
pdb|1D7H|B Chain B, Fkbp Complexed With Dmso
pdb|1D7I|A Chain A, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7I|B Chain B, Fkbp Complexed With Methyl Methylsulfinylmethyl Sulfide
(Dss)
pdb|1D7J|A Chain A, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|1D7J|B Chain B, Fkbp Complexed With 4-Hydroxy-2-Butanone
pdb|3FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|4FAP|A Chain A, Atomic Structures Of The Rapamycin Analogs In Complex With
Both Human Fkbp12 And Frb Domain Of Frap
pdb|1J4R|A Chain A, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|B Chain B, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4R|D Chain D, Fk506 Binding Protein Complexed With Fkb-001
pdb|1J4H|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000107 Small Molecule
pdb|1J4I|A Chain A, Crystal Structure Analysis Of The Fkbp12 Complexed With
000308 Small Molecule
pdb|2DG3|A Chain A, Wildtype Fk506-Binding Protein Complexed With Rapamycin
pdb|1FKD|A Chain A, Fk-506 Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1FKF|A Chain A, Atomic Structure Of Fkbp-Fk506, An
Immunophilin-Immunosuppressant Complex
pdb|1FKJ|A Chain A, Atomic Structure Of Fkbp12-Fk506, An Immunophilin
Immunosuppressant Complex
pdb|2FKE|A Chain A, Fk-506-Binding Protein: Three-Dimensional Structure Of The
Complex With The Antagonist L-685,818
pdb|1F40|A Chain A, Solution Structure Of Fkbp12 Complexed With Gpi-1046, A
Neurotrophic Ligand
pdb|1FKR|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKS|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|1FKT|A Chain A, Solution Structure Of Fkbp, A Rotamase Enzyme And Receptor
For Fk506 And Rapamycin
pdb|2PPN|A Chain A, Crystal Structure Of Fkbp12
pdb|1A7X|A Chain A, Fkbp12-Fk1012 Complex
pdb|1A7X|B Chain B, Fkbp12-Fk1012 Complex
pdb|4DH0|A Chain A, X-Ray Crystal Structure Of 28-O-Methylrapamycin Complexed
With Fkbp12: Is The Cyclohexyl Moiety Part Of The
Effector Domain Of Rapamycin?
pdb|2RSE|A Chain A, Nmr Structure Of Fkbp12-Mtor Frb Domain-Rapamycin Complex
Structure Determined Based On Pcs
pdb|1NSG|A Chain A, The Structure Of The Immunophilin-Immunosuppressant
Fkbp12- Rapamycin Complex Interacting With Human Frap
Length = 107
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH
Immunosuppressant Fk506
Length = 107
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDKNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGVPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 35/132 (26%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGI 169
+ G+G P D D V ++Y G L G FD++Y GEP+ F VIPG
Sbjct: 128 VEAGKGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTR----GEPLSFRL----DGVIPGW 177
Query: 170 EAAVRSMKVGGICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLG 229
++++K GG ++VIPP Y IPPN
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPN-------------------------S 212
Query: 230 TLIFDIELVSLR 241
TL+FD+EL+ ++
Sbjct: 213 TLVFDVELLDVK 224
>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12
Length = 107
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G + V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWQEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 35/132 (26%)
Query: 110 LRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGI 169
+ G+G P D D V ++Y G L G FD++Y GEP+ F VIPG
Sbjct: 128 VEAGKGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTR----GEPLSFRL----DGVIPGW 177
Query: 170 EAAVRSMKVGGICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLG 229
++++K GG ++VIPP Y IPPN
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPN-------------------------S 212
Query: 230 TLIFDIELVSLR 241
TL+FD+EL+ ++
Sbjct: 213 TLVFDVELLDVK 224
>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin
Length = 107
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F +G +VI G E M
Sbjct: 16 PKKGQTCVVHYTGML--QNGKKFDSSRDRNK------PFKFRIGKQEVIKGFEEGAAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
+G ++ P Y T IPPN TLIFD+E
Sbjct: 68 LGQRAKLTCTPDVAYGATGHPGVIPPN-------------------------ATLIFDVE 102
Query: 237 LVSLR 241
L++L
Sbjct: 103 LLNLE 107
>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex
pdb|1EYM|B Chain B, Fk506 Binding Protein Mutant, Homodimeric Complex
Length = 107
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G + DS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKMDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12
Length = 107
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G +FDS+ D PF F+LG +VI G V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKFDSSRDRNK------PFKFMLGKQEVIRGWAEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
pdb|1BL4|B Chain B, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand
Length = 107
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 49/125 (39%), Gaps = 34/125 (27%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +HY G L + G + DS+ D PF F+LG +VI G E V M
Sbjct: 16 PKRGQTCVVHYTGML--EDGKKVDSSRDRNK------PFKFMLGKQEVIRGWEEGVAQMS 67
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIE 236
VG ++ I P Y T IPP+ TL+FD+E
Sbjct: 68 VGQRAKLTISPDYAYGATGHPGIIPPH-------------------------ATLVFDVE 102
Query: 237 LVSLR 241
L+ L
Sbjct: 103 LLKLE 107
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 121 GDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGG 180
GD + +HY G+L + G FDS+ PF+F LG+G+VI G + + M G
Sbjct: 9 GDVLHMHYTGKL--EDGTEFDSSLPQNQ------PFVFSLGTGQVIKGWDQGLLGMCEGE 60
Query: 181 ICRVVIPPSQGYQNTSQEPIPPN 203
++VIP GY P P
Sbjct: 61 KRKLVIPSELGYGERGAPPKIPG 83
>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug
Complexes. Crystallographic And Functional Analysis
Length = 113
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 56/140 (40%), Gaps = 33/140 (23%)
Query: 103 GGVKALDLRLGRGPV-PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILG 161
G VK + G G P GD V IHY G L + G +FDS+ D PF +G
Sbjct: 6 GNVKIDRISPGDGATFPKTGDLVTIHYTGTL--ENGQKFDSSVDRGS------PFQCNIG 57
Query: 162 SGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLA 221
G+VI G + + + VG R+ IP Y R F + P
Sbjct: 58 VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG--------------PRGFPGLIPPNS-- 101
Query: 222 NGEGSTLGTLIFDIELVSLR 241
TL+FD+EL+ +
Sbjct: 102 --------TLVFDVELLKVN 113
>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl
Cis-Trans Isomerase From Giardia Lamblia, Seattle
Structural Genomics Center For Infectious Disease Target
Gilaa.00840.A
Length = 130
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177
P G +V +HY GR G +FDS+ PF F LG+G+VI G + V +M
Sbjct: 40 PQAGKKVTVHYDGRFP--DGKQFDSSRSRGK------PFQFTLGAGEVIKGWDQGVATMT 91
Query: 178 VGGICRVVIPPSQGYQNTSQEP-IPPN 203
+G IP Y P IPP
Sbjct: 92 LGEKALFTIPYQLAYGERGYPPVIPPK 118
>pdb|1IX5|A Chain A, Solution Structure Of The Methanococcus
Thermolithotrophicus Fkbp
Length = 151
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 121 GDQVAIHYYGRLAAKQGWRFDSTYDHKDQSG-------EPIPFLFILGSGKVIPGIEAAV 173
G ++ + Y G+L + G FD++ + + E P F++G G++I G E AV
Sbjct: 5 GVKIKVDYIGKLES--GDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62
Query: 174 RSMKVGGICRVVIPPSQGYQNTSQ---EPIPPNFF 205
M+VG V IP + Y N ++ + IP + F
Sbjct: 63 LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAF 97
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 104 GVKALDLRLG-RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS 162
GV+ + L G P G +HY G LA G FDS+ PF F +G
Sbjct: 2 GVQVVTLAAGDEATYPKAGQVAVVHYTGTLA--DGKVFDSSRTRGK------PFRFTVGR 53
Query: 163 GKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
G+VI G + V M VG ++V P Y + IPPN
Sbjct: 54 GEVIRGWDEGVAQMSVGQRAKLVCSPDYAYGSRGHPGVIPPN 95
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G+ D +G GP V G + HY G+L + G FDS+Y+ P F +G G
Sbjct: 13 GLAFCDKVVGYGPEAVKGQLIKAHYVGKL--ENGKVFDSSYNRGK------PLTFRIGVG 64
Query: 164 KVIPGIEAAVRS------MKVGGICRVVIPPSQGYQN 194
+VI G + + M GG + IPP Y +
Sbjct: 65 EVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGD 101
>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity
Potentiator Protein (Mip) A Major Virulence Factor From
Legionella Pneumophila
Length = 213
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 51/131 (38%), Gaps = 36/131 (27%)
Query: 113 GRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAA 172
G G P D V + Y GRL G FDST +++G+P F +VIPG A
Sbjct: 116 GNGVKPGKSDTVTVEYTGRLI--DGTVFDST----EKTGKPATFQV----SQVIPGWTEA 165
Query: 173 VRSMKVGGICRVVIPPSQGYQNTS-QEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTL 231
++ M G + +P Y S PI PN TL
Sbjct: 166 LQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNE-------------------------TL 200
Query: 232 IFDIELVSLRH 242
IF I L+S++
Sbjct: 201 IFKIHLISVKK 211
>pdb|2KR7|A Chain A, Solution Structure Of Helicobacter Pylori Slyd
Length = 151
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 155 PFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQG---YQNTSQEPIPPNFFD 206
P FI+G+ ++I G+E AV ++G VVI P + Y+++ + +P + F+
Sbjct: 36 PLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYESSYLQEVPRDQFE 90
>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella
Pneumophila Mip
pdb|2VCD|A Chain A, Solution Structure Of The Fkbp-domain Of Legionella
Pneumophila Mip In Complex With Rapamycin
Length = 137
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 11/101 (10%)
Query: 104 GVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG 163
G++ + G G P D V + Y GRL G FDST +++G+P F
Sbjct: 31 GLQYKVINSGNGVKPGKSDTVTVEYTGRLI--DGTVFDST----EKTGKPATFQV----S 80
Query: 164 KVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTS-QEPIPPN 203
+VIPG A++ M G + +P Y S PI PN
Sbjct: 81 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPN 121
>pdb|3PRB|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRB|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRD|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 231
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 121 GDQVAIHYYGRLAAKQGWRFDSTYDH---KDQSGEPI----PFLFILGSGKVIPGIEAAV 173
G V I Y G + G FD+T + K+ P P G G+V+PG++ A+
Sbjct: 5 GKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 174 RSMKVGGICRVVIPPSQGY 192
M VG VV+PP + +
Sbjct: 62 LEMDVGEEREVVLPPEKAF 80
>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans
Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato
Str. Dc3000 (Pspto Dc3000)
Length = 219
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 102 SGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILG 161
+ G+ +L G GP P +V + Y GRL G FD QS +P F
Sbjct: 116 ADGILMTELTPGTGPKPDANGRVEVRYVGRL--PDGKIFD-------QSTQPQWFRL--- 163
Query: 162 SGKVIPGIEAAVRSMKVGGICRVVIPPSQGY 192
VI G +A+++M G R+VIP Q Y
Sbjct: 164 -DSVISGWTSALQNMPTGAKWRLVIPSDQAY 193
>pdb|3PR9|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|A Chain A, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
pdb|3PRA|B Chain B, Structural Analysis Of Protein Folding By The
Methanococcus Jannaschii Chaperone Fkbp26
Length = 157
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 121 GDQVAIHYYGRLAAKQGWRFDSTYDH---KDQSGEPI----PFLFILGSGKVIPGIEAAV 173
G V I Y G + G FD+T + K+ P P G G+V+PG++ A+
Sbjct: 5 GKMVKISYDGYV---DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61
Query: 174 RSMKVGGICRVVIPPSQGY 192
M VG VV+PP + +
Sbjct: 62 LEMDVGEEREVVLPPEKAF 80
>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6
Length = 134
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Query: 96 LLELPNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIP 155
+L++ GV +R G G + V + Y G L FDS Y K P
Sbjct: 19 MLDISGDRGVLKDVIREGAGDLVAPDASVLVKYSGYLE-HMDRPFDSNYFRK------TP 71
Query: 156 FLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQEP-IPPN 203
L LG + G+E + SM+ G + R + P+ Y P IPPN
Sbjct: 72 RLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPN 120
>pdb|2QV8|A Chain A, Structure Of The Minor Pseudopilin Epsh From The Type 2
Secretion System Of Vibrio Cholerae
pdb|2QV8|B Chain B, Structure Of The Minor Pseudopilin Epsh From The Type 2
Secretion System Of Vibrio Cholerae
Length = 159
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 145 DHKDQSGEPIPFLFILGSGKVIP 167
+ K+Q EP P LF+L SG+V P
Sbjct: 100 EKKEQKQEPAPQLFVLSSGEVTP 122
>pdb|1L1P|A Chain A, Solution Structure Of The Ppiase Domain From E. Coli
Trigger Factor
Length = 106
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 149 QSGEPIPFLFILGSGKVIPGIEAAVRSMKVG 179
+ G+ F+ +G G++IPG E ++ K G
Sbjct: 35 EGGKASDFVLAMGQGRMIPGFEDGIKGHKAG 65
>pdb|1SK9|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SKA|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SKB|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
pdb|1SK8|A Chain A, Crystallographic Snapshots Of Aspergillus Fumigatus
Phytase Revealing Its Enzymatic Dynamics
Length = 439
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 154 IPFLFILGSGKVIPGIEAAVRSMKVGGIC------------RVVIPPSQGYQNTSQEPIP 201
+PF+ GS +VI E + + + V+IP S+ + NT +
Sbjct: 128 VPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVC 187
Query: 202 PNFFDRQ------RLFTTIFNPTRLANGEGSTLGTLIFDIELVSL 240
F Q FT +F P A E G + D ++VSL
Sbjct: 188 TKFEASQLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSL 232
>pdb|1QWO|A Chain A, Crystal Structure Of A Phosphorylated Phytase From
Aspergillus Fumigatus, Revealing The Structural Basis
For Its Heat Resilience And Catalytic Pathway
Length = 442
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 18/105 (17%)
Query: 154 IPFLFILGSGKVIPGIEAAVRSMKVGGIC------------RVVIPPSQGYQNTSQEPIP 201
+PF+ GS +VI E + + + V+IP S+ + NT +
Sbjct: 131 VPFIRASGSDRVIASGEKFIEGFQQAKLADPGATNRAAPAISVIIPESETFNNTLDHGVC 190
Query: 202 PNFFDRQ------RLFTTIFNPTRLANGEGSTLGTLIFDIELVSL 240
F Q FT +F P A E G + D ++VSL
Sbjct: 191 TKFEASQLGDEVAANFTALFAPDIRARAEKHLPGVTLTDEDVVSL 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,535,494
Number of Sequences: 62578
Number of extensions: 243962
Number of successful extensions: 660
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 61
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)