Query 026149
Match_columns 242
No_of_seqs 261 out of 1436
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 99.9 1.3E-27 2.8E-32 198.7 12.2 109 98-241 96-205 (205)
2 KOG0544 FKBP-type peptidyl-pro 99.9 5.4E-26 1.2E-30 166.1 11.5 105 104-241 2-108 (108)
3 KOG0552 FKBP-type peptidyl-pro 99.9 8.1E-25 1.7E-29 185.9 12.2 109 100-241 117-226 (226)
4 KOG0549 FKBP-type peptidyl-pro 99.9 2.9E-24 6.3E-29 175.4 13.7 109 101-242 66-177 (188)
5 PRK11570 peptidyl-prolyl cis-t 99.9 1.8E-23 3.9E-28 177.5 13.9 107 100-241 99-206 (206)
6 TIGR03516 ppisom_GldI peptidyl 99.9 1.9E-23 4.2E-28 173.4 13.7 110 99-242 65-177 (177)
7 PRK10902 FKBP-type peptidyl-pr 99.9 9.1E-22 2E-26 173.0 14.4 107 101-242 144-250 (269)
8 COG1047 SlpA FKBP-type peptidy 99.9 2E-21 4.3E-26 159.0 10.5 117 117-242 2-142 (174)
9 PRK15095 FKBP-type peptidyl-pr 99.9 2.3E-21 5.1E-26 157.9 10.4 117 117-242 4-145 (156)
10 PF00254 FKBP_C: FKBP-type pep 99.8 4.4E-20 9.5E-25 137.5 10.9 90 116-238 3-94 (94)
11 PRK10737 FKBP-type peptidyl-pr 99.8 2.1E-20 4.7E-25 156.8 10.2 116 117-242 2-141 (196)
12 KOG0543 FKBP-type peptidyl-pro 99.6 4.7E-14 1E-18 128.3 13.8 103 102-241 83-190 (397)
13 TIGR00115 tig trigger factor. 99.1 3.5E-10 7.6E-15 105.3 10.7 87 116-242 145-231 (408)
14 PRK01490 tig trigger factor; P 99.1 1.2E-09 2.5E-14 102.6 11.3 87 116-242 156-242 (435)
15 COG0544 Tig FKBP-type peptidyl 98.9 4.1E-09 9E-14 98.9 9.3 85 118-242 158-242 (441)
16 KOG0543 FKBP-type peptidyl-pro 98.8 8.2E-09 1.8E-13 94.3 6.1 80 111-238 1-82 (397)
17 KOG0545 Aryl-hydrocarbon recep 97.7 1.8E-05 3.9E-10 68.7 2.0 83 101-189 8-92 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.2 0.00012 2.7E-09 60.5 1.3 39 158-196 1-39 (188)
19 PHA02122 hypothetical protein 58.5 17 0.00037 24.4 3.4 20 119-141 39-58 (65)
20 PRK05753 nucleoside diphosphat 49.8 43 0.00093 26.5 5.2 24 165-188 91-114 (137)
21 cd01090 Creatinase Creatine am 49.4 58 0.0013 27.7 6.4 51 116-181 75-134 (228)
22 TIGR01462 greA transcription e 48.1 55 0.0012 26.2 5.6 26 164-189 116-141 (151)
23 TIGR01461 greB transcription e 46.6 47 0.001 26.9 5.0 25 165-189 119-143 (156)
24 PRK01885 greB transcription el 44.2 50 0.0011 26.7 4.9 25 165-189 121-145 (157)
25 cd01089 PA2G4-like Related to 43.7 90 0.002 26.4 6.7 51 116-181 81-145 (228)
26 PF01272 GreA_GreB: Transcript 43.2 25 0.00054 24.7 2.6 24 165-188 42-65 (77)
27 cd01088 MetAP2 Methionine Amin 40.9 72 0.0016 28.3 5.8 53 114-181 67-125 (291)
28 COG0024 Map Methionine aminope 38.6 1.1E+02 0.0023 27.0 6.3 51 116-181 85-145 (255)
29 PRK08671 methionine aminopepti 37.5 89 0.0019 27.7 5.8 51 115-180 69-125 (291)
30 TIGR00501 met_pdase_II methion 37.2 89 0.0019 27.8 5.8 51 115-180 72-128 (295)
31 PRK12897 methionine aminopepti 37.0 1.2E+02 0.0027 25.9 6.6 53 115-182 82-143 (248)
32 PRK12896 methionine aminopepti 30.1 1.9E+02 0.004 24.6 6.5 50 115-179 88-146 (255)
33 PTZ00053 methionine aminopepti 29.9 89 0.0019 30.1 4.7 50 116-180 232-287 (470)
34 PF10518 TAT_signal: TAT (twin 29.6 71 0.0015 17.7 2.5 14 60-73 2-15 (26)
35 TIGR00495 crvDNA_42K 42K curve 29.4 1.4E+02 0.003 27.9 5.9 51 116-181 99-163 (389)
36 TIGR00500 met_pdase_I methioni 28.4 1.9E+02 0.0041 24.5 6.3 51 115-180 81-140 (247)
37 PF05984 Cytomega_UL20A: Cytom 28.0 67 0.0014 23.5 2.7 17 60-77 1-17 (100)
38 PRK12318 methionine aminopepti 27.9 2E+02 0.0043 25.5 6.5 51 115-180 123-182 (291)
39 PRK13838 conjugal transfer pil 27.8 2E+02 0.0043 23.7 6.0 12 116-127 49-60 (176)
40 PRK05892 nucleoside diphosphat 26.8 1.7E+02 0.0037 23.6 5.3 24 165-188 121-144 (158)
41 PLN03158 methionine aminopepti 26.5 2.2E+02 0.0048 26.7 6.7 51 115-180 215-274 (396)
42 PRK05716 methionine aminopepti 25.5 2.5E+02 0.0055 23.7 6.5 50 115-179 83-141 (252)
43 cd01086 MetAP1 Methionine Amin 25.4 2.3E+02 0.0051 23.7 6.2 50 115-179 73-131 (238)
44 PRK06342 transcription elongat 23.6 2.1E+02 0.0045 23.3 5.3 20 165-184 130-149 (160)
45 PRK00226 greA transcription el 21.7 86 0.0019 25.1 2.7 25 164-188 121-145 (157)
46 TIGR02993 ectoine_eutD ectoine 20.8 2E+02 0.0044 26.5 5.3 52 116-182 236-296 (391)
47 PLN00042 photosystem II oxygen 20.6 2E+02 0.0044 25.4 4.9 45 61-108 51-95 (260)
48 PRK15173 peptidase; Provisiona 20.1 2.3E+02 0.005 25.5 5.4 52 115-181 167-227 (323)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-27 Score=198.74 Aligned_cols=109 Identities=40% Similarity=0.731 Sum_probs=101.7
Q ss_pred ccCCCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCC
Q 026149 98 ELPNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMK 177 (242)
Q Consensus 98 ~~~~~sGl~~~~l~eG~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmk 177 (242)
....++|++|++++.|+|..+..+|.|.+||++++. ||++||||+++ ++|+.|.+| .+|+||.++|.+|+
T Consensus 96 v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~--~G~vFDsS~~r------g~p~~f~l~--~vI~Gw~egl~~M~ 165 (205)
T COG0545 96 VKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLI--DGTVFDSSYDR------GQPAEFPLG--GVIPGWDEGLQGMK 165 (205)
T ss_pred ceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecC--CCCcccccccc------CCCceeecC--CeeehHHHHHhhCC
Confidence 334689999999999999999999999999999996 99999999986 569999998 99999999999999
Q ss_pred CCcEEEEEEcCCCCCCCCCCCC-CCCCccccccccccccccccccCCCCCcceEEEEEEEEEEee
Q 026149 178 VGGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 241 (242)
Q Consensus 178 vGe~~~v~Ipp~~aYG~~~~~~-iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr 241 (242)
+|++++++|||++|||.++... |||| ++|+|+|||++|.
T Consensus 166 vG~k~~l~IP~~laYG~~g~~g~Ippn-------------------------s~LvFeVeLl~v~ 205 (205)
T COG0545 166 VGGKRKLTIPPELAYGERGVPGVIPPN-------------------------STLVFEVELLDVK 205 (205)
T ss_pred CCceEEEEeCchhccCcCCCCCCCCCC-------------------------CeEEEEEEEEecC
Confidence 9999999999999999999544 9999 9999999999984
No 2
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=5.4e-26 Score=166.14 Aligned_cols=105 Identities=39% Similarity=0.729 Sum_probs=98.6
Q ss_pred CeEEEEEecCCC-CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEE
Q 026149 104 GVKALDLRLGRG-PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGIC 182 (242)
Q Consensus 104 Gl~~~~l~eG~G-~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~ 182 (242)
|+..+++..|+| ..+++||+|++||++.+. ||+.||||.++ ..||.|.+|.+++|.||+|++..|.+||+.
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~--dG~kfDSs~dr------~kPfkf~IGkgeVIkGwdegv~qmsvGeka 73 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQ--DGKKFDSSRDR------GKPFKFKIGKGEVIKGWDEGVAQMSVGEKA 73 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEec--CCcEeeccccc------CCCeeEEecCcceeechhhcchhccccccc
Confidence 688999999999 469999999999999996 99999999986 579999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCC-CCCCccccccccccccccccccCCCCCcceEEEEEEEEEEee
Q 026149 183 RVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 241 (242)
Q Consensus 183 ~v~Ipp~~aYG~~~~~~-iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr 241 (242)
++.|+|+.+||..+... |||| ++|.|+|||++|.
T Consensus 74 kLti~pd~aYG~~G~p~~IppN-------------------------atL~FdVEll~v~ 108 (108)
T KOG0544|consen 74 KLTISPDYAYGPRGHPGGIPPN-------------------------ATLVFDVELLKVN 108 (108)
T ss_pred eeeeccccccCCCCCCCccCCC-------------------------cEEEEEEEEEecC
Confidence 99999999999999644 9999 9999999999873
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.1e-25 Score=185.86 Aligned_cols=109 Identities=47% Similarity=0.858 Sum_probs=103.2
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEE-EEcCCCCchHHHHHHHhcCCC
Q 026149 100 PNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFL-FILGSGKVIPGIEAAVRSMKV 178 (242)
Q Consensus 100 ~~~sGl~~~~l~eG~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~-f~lG~~~~ipgleeaL~gmkv 178 (242)
..++|++|++++.|+|..+..|+.|.+||.+++.+ +|++||+++. ..|+. |.+|.+++|+||+.+|.||++
T Consensus 117 tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~-~GkvFd~~~~-------~kp~~~f~lg~g~VIkG~d~gv~GMkv 188 (226)
T KOG0552|consen 117 TLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKG-NGKVFDSNFG-------GKPFKLFRLGSGEVIKGWDVGVEGMKV 188 (226)
T ss_pred ecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecC-CCeEeecccC-------CCCccccccCCCCCCchHHHhhhhhcc
Confidence 45799999999999999999999999999999974 9999999987 34888 999999999999999999999
Q ss_pred CcEEEEEEcCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEee
Q 026149 179 GGICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 241 (242)
Q Consensus 179 Ge~~~v~Ipp~~aYG~~~~~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr 241 (242)
|++|+|+|||++|||.++.+.||+| ++|+|+|||+.|+
T Consensus 189 GGkRrviIPp~lgYg~~g~~~Ippn-------------------------stL~fdVEL~~v~ 226 (226)
T KOG0552|consen 189 GGKRRVIIPPELGYGKKGVPEIPPN-------------------------STLVFDVELLSVK 226 (226)
T ss_pred CCeeEEEeCccccccccCcCcCCCC-------------------------CcEEEEEEEEecC
Confidence 9999999999999999999999999 9999999999874
No 4
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.9e-24 Score=175.37 Aligned_cols=109 Identities=37% Similarity=0.655 Sum_probs=96.6
Q ss_pred CCCCeEEEEEecC--CCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCC
Q 026149 101 NSGGVKALDLRLG--RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKV 178 (242)
Q Consensus 101 ~~sGl~~~~l~eG--~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkv 178 (242)
+.+++++.++++- ..++.+.||+|.+||++.+. ||+.|||||.+ ++|++|++|.+++|+||+++|+||++
T Consensus 66 ~~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~le--DGt~fdSS~~r------g~P~~f~LG~gqVIkG~Dqgl~gMCv 137 (188)
T KOG0549|consen 66 PDEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLE--DGTKFDSSYSR------GAPFTFTLGTGQVIKGWDQGLLGMCV 137 (188)
T ss_pred CCCceeEEEEECCccccccccCCCEEEEEEEEEec--CCCEEeeeccC------CCCEEEEeCCCceeccHhHHhhhhCc
Confidence 3456777776653 44679999999999999885 99999999986 56999999999999999999999999
Q ss_pred CcEEEEEEcCCCCCCCCCCCC-CCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 179 GGICRVVIPPSQGYQNTSQEP-IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 179 Ge~~~v~Ipp~~aYG~~~~~~-iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
||+|+++|||+++||+++..+ ||++ ++|+|+|||+++.+
T Consensus 138 GEkRkl~IPp~LgYG~~G~~~~IP~~-------------------------A~LiFdiELv~i~~ 177 (188)
T KOG0549|consen 138 GEKRKLIIPPHLGYGERGAPPKIPGD-------------------------AVLIFDIELVKIER 177 (188)
T ss_pred ccceEEecCccccCccCCCCCCCCCC-------------------------eeEEEEEEEEEeec
Confidence 999999999999999999544 9999 99999999999863
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.91 E-value=1.8e-23 Score=177.47 Aligned_cols=107 Identities=34% Similarity=0.575 Sum_probs=99.3
Q ss_pred CCCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCC
Q 026149 100 PNSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVG 179 (242)
Q Consensus 100 ~~~sGl~~~~l~eG~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvG 179 (242)
.+++|++|+++++|+|..+..+|.|.|||++++. ||++||+|+.+ +.|+.|.++ .++|||+++|.+|++|
T Consensus 99 ~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~--dG~vfdss~~~------g~P~~f~l~--~vipG~~eaL~~M~~G 168 (206)
T PRK11570 99 STESGLQFRVLTQGEGAIPARTDRVRVHYTGKLI--DGTVFDSSVAR------GEPAEFPVN--GVIPGWIEALTLMPVG 168 (206)
T ss_pred ECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEEC--CCCEEEeccCC------CCCeEEEee--chhhHHHHHHcCCCCC
Confidence 3689999999999999999999999999999996 99999999965 459999996 6999999999999999
Q ss_pred cEEEEEEcCCCCCCCCCCC-CCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEee
Q 026149 180 GICRVVIPPSQGYQNTSQE-PIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 241 (242)
Q Consensus 180 e~~~v~Ipp~~aYG~~~~~-~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr 241 (242)
++++|.|||+++||+.+.. .|||+ ++|+|+|||++|.
T Consensus 169 ~k~~~~IP~~lAYG~~g~~~~Ipp~-------------------------s~Lif~veLl~i~ 206 (206)
T PRK11570 169 SKWELTIPHELAYGERGAGASIPPF-------------------------STLVFEVELLEIL 206 (206)
T ss_pred CEEEEEECHHHcCCCCCCCCCcCCC-------------------------CeEEEEEEEEEEC
Confidence 9999999999999998864 59999 9999999999984
No 6
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.90 E-value=1.9e-23 Score=173.38 Aligned_cols=110 Identities=21% Similarity=0.306 Sum_probs=100.0
Q ss_pred cCCCCCeEEEEEec--CCCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcC
Q 026149 99 LPNSGGVKALDLRL--GRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSM 176 (242)
Q Consensus 99 ~~~~sGl~~~~l~e--G~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gm 176 (242)
..+++|++|.++++ |+|..++.||.|++||++++. ||++|+++++ ..|+.|.+|.+++++||+++|.+|
T Consensus 65 ~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~--dG~v~~ss~~-------~~P~~f~vg~~~vi~Gl~e~L~~M 135 (177)
T TIGR03516 65 ETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRAL--DGDVIYSEEE-------LGPQTYKVDQQDLFSGLRDGLKLM 135 (177)
T ss_pred eECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeC--CCCEEEeCCC-------CCCEEEEeCCcchhHHHHHHHcCC
Confidence 44679999999876 667789999999999999997 9999999985 239999999999999999999999
Q ss_pred CCCcEEEEEEcCCCCCCCCCC-CCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 177 KVGGICRVVIPPSQGYQNTSQ-EPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 177 kvGe~~~v~Ipp~~aYG~~~~-~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
++||+++|.|||++|||.++. ..||+| ++|+|+|+|++|.+
T Consensus 136 k~Ge~~~~~iP~~~AYG~~g~~~~Ippn-------------------------s~L~f~IeL~~i~~ 177 (177)
T TIGR03516 136 KEGETATFLFPSHKAYGYYGDQNKIGPN-------------------------LPIISTVTLLNIKP 177 (177)
T ss_pred CCCCEEEEEECHHHcCCCCCCCCCcCcC-------------------------CcEEEEEEEEEecC
Confidence 999999999999999999986 459999 99999999999964
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.88 E-value=9.1e-22 Score=172.97 Aligned_cols=107 Identities=36% Similarity=0.659 Sum_probs=99.6
Q ss_pred CCCCeEEEEEecCCCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCc
Q 026149 101 NSGGVKALDLRLGRGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGG 180 (242)
Q Consensus 101 ~~sGl~~~~l~eG~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe 180 (242)
+++|++|+++++|+|..++.||.|.|||++++. ||++|++++.+ +.|+.|.++ .++|||+++|.+|++|+
T Consensus 144 t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~--dG~vfdss~~~------g~p~~f~l~--~vipG~~EaL~~Mk~Ge 213 (269)
T PRK10902 144 TSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLI--DGKEFDNSYTR------GEPLSFRLD--GVIPGWTEGLKNIKKGG 213 (269)
T ss_pred CCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeC--CCCEeeccccC------CCceEEecC--CcchHHHHHHhcCCCCc
Confidence 589999999999999999999999999999986 99999999865 458999885 69999999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 181 ICRVVIPPSQGYQNTSQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 181 ~~~v~Ipp~~aYG~~~~~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
+++|+||++++||..+...||++ ++|+|+|+|++|++
T Consensus 214 k~~l~IP~~laYG~~g~~gIppn-------------------------s~LvfeVeLl~V~~ 250 (269)
T PRK10902 214 KIKLVIPPELAYGKAGVPGIPAN-------------------------STLVFDVELLDVKP 250 (269)
T ss_pred EEEEEECchhhCCCCCCCCCCCC-------------------------CcEEEEEEEEEecc
Confidence 99999999999999987789999 99999999999863
No 8
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-21 Score=158.97 Aligned_cols=117 Identities=29% Similarity=0.492 Sum_probs=104.2
Q ss_pred CCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCCC
Q 026149 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTS 196 (242)
Q Consensus 117 ~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~~ 196 (242)
++++||.|.+||++++. ||++||+|.+. +.|+.|.+|.++++||||++|.||.+|++++|.|||++|||+++
T Consensus 2 ~i~k~~~V~i~Y~~~~~--dg~v~Dtt~e~------~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 2 KIEKGDVVSLHYTLKVE--DGEVVDTTDEN------YGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred cccCCCEEEEEEEEEec--CCcEEEccccc------CCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC
Confidence 47899999999999996 89999999763 45999999999999999999999999999999999999999999
Q ss_pred CC---CCCCCccccccccccccccccccCCCCCcc---------------------eEEEEEEEEEEeeC
Q 026149 197 QE---PIPPNFFDRQRLFTTIFNPTRLANGEGSTL---------------------GTLIFDIELVSLRH 242 (242)
Q Consensus 197 ~~---~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~---------------------~~L~f~vell~vr~ 242 (242)
+. .+|.+.|.+.. ...+||.+.++++++.+. ++|.|+|+|+++++
T Consensus 74 ~~lvq~vp~~~F~~~~-~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v~~ 142 (174)
T COG1047 74 PDLVQRVPRDEFQGVG-ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEVRE 142 (174)
T ss_pred hHHeEEecHHHhCcCC-CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEEec
Confidence 74 49999998876 778999999888754332 79999999999985
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.86 E-value=2.3e-21 Score=157.94 Aligned_cols=117 Identities=24% Similarity=0.331 Sum_probs=101.0
Q ss_pred CCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCCC
Q 026149 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTS 196 (242)
Q Consensus 117 ~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~~ 196 (242)
+++.||.|.+||++++. ||++||+|+.. +.|+.|.+|.+++++||+++|.||++|++++|.|||++|||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~--dG~v~dst~~~------~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLD--DGSTAESTRNN------GKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred ccCCCCEEEEEEEEEeC--CCCEEEECCCC------CCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 57899999999999995 99999999853 45999999999999999999999999999999999999999998
Q ss_pred CCC---CCCCccccccccccccccccccCCCCCcc----------------------eEEEEEEEEEEeeC
Q 026149 197 QEP---IPPNFFDRQRLFTTIFNPTRLANGEGSTL----------------------GTLIFDIELVSLRH 242 (242)
Q Consensus 197 ~~~---iP~~~f~~~~~~~~~~~~~~~~~~~g~~~----------------------~~L~f~vell~vr~ 242 (242)
+.. +|...|+... .+.+++.+.+.+.+|... ++|.|+|+|++||+
T Consensus 76 ~~~v~~vp~~~f~~~~-~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~i~~v~~ 145 (156)
T PRK15095 76 PDLIQYFSRRDFMDAG-EPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDP 145 (156)
T ss_pred hHHEEEecHHHCCccc-CCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEecc
Confidence 754 7888886532 356777777777777532 79999999999974
No 10
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.83 E-value=4.4e-20 Score=137.47 Aligned_cols=90 Identities=52% Similarity=0.914 Sum_probs=82.9
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCC
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNT 195 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~ 195 (242)
..++.||.|.+||++++. +|++|++++.. ..|+.|.+|.+.+++||+++|.+|++||+++|.|||+++||+.
T Consensus 3 ~~~~~gd~V~i~y~~~~~--~g~~~~~~~~~------~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~ 74 (94)
T PF00254_consen 3 RTPKEGDTVTIHYTGRLE--DGKVFDSSYQE------GEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEK 74 (94)
T ss_dssp SSBSTTSEEEEEEEEEET--TSEEEEETTTT------TSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTT
T ss_pred ccCCCCCEEEEEEEEEEC--CCcEEEEeeec------CcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCcc
Confidence 358999999999999995 99999999753 5599999999999999999999999999999999999999998
Q ss_pred CCCC--CCCCccccccccccccccccccCCCCCcceEEEEEEEEE
Q 026149 196 SQEP--IPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELV 238 (242)
Q Consensus 196 ~~~~--iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell 238 (242)
+... ||++ ++|+|+|+|+
T Consensus 75 ~~~~~~ip~~-------------------------~~l~f~Iell 94 (94)
T PF00254_consen 75 GLEPPKIPPN-------------------------STLVFEIELL 94 (94)
T ss_dssp TBCTTTBTTT-------------------------SEEEEEEEEE
T ss_pred ccCCCCcCCC-------------------------CeEEEEEEEC
Confidence 8643 9999 9999999996
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.83 E-value=2.1e-20 Score=156.81 Aligned_cols=116 Identities=21% Similarity=0.332 Sum_probs=101.1
Q ss_pred CCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCCC
Q 026149 117 VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTS 196 (242)
Q Consensus 117 ~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~~ 196 (242)
++++++.|+|+|++++. ||++|++|+. ..|+.|.+|.++++|+||++|.||++|++++|.|||++|||+++
T Consensus 2 kI~~~~vV~l~Y~l~~~--dG~v~dst~~-------~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d 72 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTE--DGVLVDESPV-------SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD 72 (196)
T ss_pred ccCCCCEEEEEEEEEeC--CCCEEEecCC-------CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence 47899999999999995 9999999975 45999999999999999999999999999999999999999999
Q ss_pred CC---CCCCCccccccccccccccccccCCCCCcc---------------------eEEEEEEEEEEeeC
Q 026149 197 QE---PIPPNFFDRQRLFTTIFNPTRLANGEGSTL---------------------GTLIFDIELVSLRH 242 (242)
Q Consensus 197 ~~---~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~---------------------~~L~f~vell~vr~ 242 (242)
+. .+|...|++.. ...++|.+.+++++|... ++|.|+|+|++||+
T Consensus 73 ~~lV~~vpr~~F~~~~-~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~vD~NHPLAG~~L~F~veV~~vr~ 141 (196)
T PRK10737 73 ENLVQRVPKDVFMGVD-ELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIRE 141 (196)
T ss_pred hHHEEEecHHHCCCcc-CCCCCCEEEEeCCCCcEEEEEEEEcCCEEEEECCCcCCCCEEEEEEEEEEecc
Confidence 74 48888886432 257888888888888522 79999999999984
No 12
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=4.7e-14 Score=128.29 Aligned_cols=103 Identities=38% Similarity=0.617 Sum_probs=91.0
Q ss_pred CCCeEEEEEecCCC--CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCC-CCchHHHHHHHhcCCC
Q 026149 102 SGGVKALDLRLGRG--PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGS-GKVIPGIEAAVRSMKV 178 (242)
Q Consensus 102 ~sGl~~~~l~eG~G--~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~-~~~ipgleeaL~gmkv 178 (242)
+.+|..+++++|.| ..|.+|..|.+||.+++. ++ +|+++.- .|.|..|. ..++.||+-+|..|++
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~--~~-~f~~~~~---------~fe~~~Ge~~~vi~Gle~al~~M~~ 150 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELE--DG-VFDQREL---------RFEFGEGEDIDVIEGLEIALRMMKV 150 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEEC--Cc-ceecccc---------ceEEecCCccchhHHHHHHHHhcCc
Confidence 78999999999999 679999999999999994 55 7876542 57888887 5899999999999999
Q ss_pred CcEEEEEEcCCCCCCCCCC--CCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEee
Q 026149 179 GGICRVVIPPSQGYQNTSQ--EPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLR 241 (242)
Q Consensus 179 Ge~~~v~Ipp~~aYG~~~~--~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr 241 (242)
||...|+|+|+++||+.+. ..|||+ ++|.|+|+|+++.
T Consensus 151 GE~a~v~i~~~YayG~~~~~~p~IPPn-------------------------A~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 151 GEVALVTIDPKYAYGEEGGEPPLIPPN-------------------------ATLLYEVELLDFE 190 (397)
T ss_pred cceEEEEeCcccccCCCCCCCCCCCCC-------------------------ceEEEEEEEEeee
Confidence 9999999999999996553 349999 9999999999975
No 13
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=99.12 E-value=3.5e-10 Score=105.31 Aligned_cols=87 Identities=24% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCC
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNT 195 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~ 195 (242)
.+++.||.|.++|+++. +|+.|+++.. .++.|.+|.+.++|||+++|.||++|++++|.+++...|+..
T Consensus 145 ~~~~~gD~V~v~~~~~~---dg~~~~~~~~--------~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~ 213 (408)
T TIGR00115 145 RAAEKGDRVTIDFEGFI---DGEAFEGGKA--------ENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAE 213 (408)
T ss_pred cccCCCCEEEEEEEEEE---CCEECcCCCC--------CCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcc
Confidence 46889999999999987 8999887653 489999999999999999999999999999999988888765
Q ss_pred CCCCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 196 SQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 196 ~~~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
+.. + +++.|+|+|.+|++
T Consensus 214 ~~~----g-------------------------k~~~f~v~i~~I~~ 231 (408)
T TIGR00115 214 ELA----G-------------------------KEATFKVTVKEVKE 231 (408)
T ss_pred cCC----C-------------------------CeEEEEEEEEEecc
Confidence 432 2 88999999999863
No 14
>PRK01490 tig trigger factor; Provisional
Probab=99.06 E-value=1.2e-09 Score=102.63 Aligned_cols=87 Identities=24% Similarity=0.457 Sum_probs=74.8
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCC
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNT 195 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~ 195 (242)
.+++.||.|.++|+++. +|+.|+++. ..++.|.+|.+.++|||+++|.||++|+++.|.+++...|+..
T Consensus 156 ~~~~~gD~V~vd~~~~~---~g~~~~~~~--------~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~ 224 (435)
T PRK01490 156 RPAENGDRVTIDFVGSI---DGEEFEGGK--------AEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAE 224 (435)
T ss_pred ccCCCCCEEEEEEEEEE---CCEECcCCC--------CCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccc
Confidence 45899999999999998 888888654 3489999999999999999999999999999999988888764
Q ss_pred CCCCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 196 SQEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 196 ~~~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
+.. + +++.|+|+|.+|++
T Consensus 225 ~la----g-------------------------k~~~f~v~v~~V~~ 242 (435)
T PRK01490 225 DLA----G-------------------------KEATFKVTVKEVKE 242 (435)
T ss_pred cCC----C-------------------------CeEEEEEEEEEecc
Confidence 332 2 78899999999863
No 15
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.1e-09 Score=98.93 Aligned_cols=85 Identities=25% Similarity=0.467 Sum_probs=73.1
Q ss_pred CCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCCCC
Q 026149 118 PVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTSQ 197 (242)
Q Consensus 118 ~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~~~ 197 (242)
++.||.|+|+|.++. ||..|.... ...+.|.||++++||||+++|.||+.|+.+.|.|.....|...+.
T Consensus 158 a~~gD~v~IDf~g~i---Dg~~fegg~--------ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L 226 (441)
T COG0544 158 AENGDRVTIDFEGSV---DGEEFEGGK--------AENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL 226 (441)
T ss_pred cccCCEEEEEEEEEE---cCeeccCcc--------ccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh
Confidence 899999999999987 899887543 458999999999999999999999999999998888888876544
Q ss_pred CCCCCCccccccccccccccccccCCCCCcceEEEEEEEEEEeeC
Q 026149 198 EPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVSLRH 242 (242)
Q Consensus 198 ~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell~vr~ 242 (242)
.+ ++..|.|+|.+|.+
T Consensus 227 aG-----------------------------K~a~F~V~vkeVk~ 242 (441)
T COG0544 227 AG-----------------------------KEATFKVKVKEVKK 242 (441)
T ss_pred CC-----------------------------CceEEEEEEEEEee
Confidence 43 67789999998863
No 16
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.2e-09 Score=94.35 Aligned_cols=80 Identities=44% Similarity=0.777 Sum_probs=68.6
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCCCcEEEEEEcCC
Q 026149 111 RLGRGP-VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKVGGICRVVIPPS 189 (242)
Q Consensus 111 ~eG~G~-~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~ 189 (242)
++|+|. .|..||.|.+||++++. ||+.||||.+ ..|+.|.+|.+.+|.+|..++..|+.
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~--dgt~fdss~d-------~~~~~~~lg~g~vi~~~~~gv~tm~~----------- 60 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLL--DGTKFDSSRD-------GDPFKFDLGKGSVIKGWDLGVATMKK----------- 60 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEec--CCeecccccC-------CCceeeecCCCccccccccccccccc-----------
Confidence 478884 69999999999999997 9999999986 45999999999999999999999998
Q ss_pred CCCCCCC-CCCCCCCccccccccccccccccccCCCCCcceEEEEEEEEE
Q 026149 190 QGYQNTS-QEPIPPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELV 238 (242)
Q Consensus 190 ~aYG~~~-~~~iP~~~f~~~~~~~~~~~~~~~~~~~g~~~~~L~f~vell 238 (242)
|..+ ++.||++ .+|+|+|+++
T Consensus 61 ---g~~~~pp~ip~~-------------------------a~l~fe~el~ 82 (397)
T KOG0543|consen 61 ---GEAGSPPKIPSN-------------------------ATLLFEVELL 82 (397)
T ss_pred ---cccCCCCCCCCC-------------------------cceeeeeccc
Confidence 3444 3458888 8888888874
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=1.8e-05 Score=68.74 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=72.8
Q ss_pred CCCCeEEEEEecCCCC--CCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCCchHHHHHHHhcCCC
Q 026149 101 NSGGVKALDLRLGRGP--VPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGKVIPGIEAAVRSMKV 178 (242)
Q Consensus 101 ~~sGl~~~~l~eG~G~--~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~~ipgleeaL~gmkv 178 (242)
...|+++.++..|+|+ ...+|..|.+||.....++.++++|+|+.. ++|+.+++|.---+|-||..|..|++
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~------gkPmeiiiGkkFkL~VwE~il~tM~v 81 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKV------GKPMEIIIGKKFKLEVWEIILTTMRV 81 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhc------CCCeEEeeccccccHHHHHHHHHHhh
Confidence 4579999999999996 467899999999998876677899999875 56999999988789999999999999
Q ss_pred CcEEEEEEcCC
Q 026149 179 GGICRVVIPPS 189 (242)
Q Consensus 179 Ge~~~v~Ipp~ 189 (242)
+|...|.+...
T Consensus 82 ~EvaqF~~d~~ 92 (329)
T KOG0545|consen 82 HEVAQFWCDTI 92 (329)
T ss_pred hhHHHhhhhhh
Confidence 99999888654
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00012 Score=60.50 Aligned_cols=39 Identities=44% Similarity=0.775 Sum_probs=35.3
Q ss_pred EEcCCCCchHHHHHHHhcCCCCcEEEEEEcCCCCCCCCC
Q 026149 158 FILGSGKVIPGIEAAVRSMKVGGICRVVIPPSQGYQNTS 196 (242)
Q Consensus 158 f~lG~~~~ipgleeaL~gmkvGe~~~v~Ipp~~aYG~~~ 196 (242)
|++|.+.++|++++++.||+.|+++++++||+++||..+
T Consensus 1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~ 39 (188)
T KOG0549|consen 1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGG 39 (188)
T ss_pred CcccceEEecCHHHHhhhhhccccceeccCCcccccccc
Confidence 457788999999999999999999999999999999544
No 19
>PHA02122 hypothetical protein
Probab=58.54 E-value=17 Score=24.39 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=17.2
Q ss_pred CCCCEEEEEEEEEEecCCCcEEe
Q 026149 119 VDGDQVAIHYYGRLAAKQGWRFD 141 (242)
Q Consensus 119 ~~gd~V~v~Y~~~~~~~dG~~~d 141 (242)
..||.|.++|+.+. +|+.|-
T Consensus 39 ~~gd~v~vn~e~~~---ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVV---NGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEE---CCEEEE
Confidence 37899999999998 888874
No 20
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=49.81 E-value=43 Score=26.46 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=20.4
Q ss_pred chHHHHHHHhcCCCCcEEEEEEcC
Q 026149 165 VIPGIEAAVRSMKVGGICRVVIPP 188 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v~Ipp 188 (242)
+..-+-.+|+|.++||.+.+..|.
T Consensus 91 i~SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 91 VLAPVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred ccCHHHHHHcCCCCCCEEEEECCC
Confidence 456788999999999999997664
No 21
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=49.40 E-value=58 Score=27.68 Aligned_cols=51 Identities=14% Similarity=0.179 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCcE
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGGI 181 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe~ 181 (242)
..+++||.|.+++-..+ +|...|.++ +|.+|... +..+++.++..+|+|-+
T Consensus 75 r~l~~GD~v~~d~g~~~---~GY~ad~~R------------T~~vG~~~~~~~~~~~~~~ea~~~~~~~~rpG~~ 134 (228)
T cd01090 75 RKVQRGDILSLNCFPMI---AGYYTALER------------TLFLDEVSDAHLKIWEANVAVHERGLELIKPGAR 134 (228)
T ss_pred cccCCCCEEEEEEeEEE---CCEeeeeEE------------EEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 56899999999988876 776555433 46666322 34556667777777744
No 22
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=48.13 E-value=55 Score=26.16 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.7
Q ss_pred CchHHHHHHHhcCCCCcEEEEEEcCC
Q 026149 164 KVIPGIEAAVRSMKVGGICRVVIPPS 189 (242)
Q Consensus 164 ~~ipgleeaL~gmkvGe~~~v~Ipp~ 189 (242)
.+...+-.+|+|+++||.+.+.+|..
T Consensus 116 S~~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 116 SIDSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred cCCCHHHHHHcCCCCCCEEEEEeCCC
Confidence 45567899999999999999987753
No 23
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=46.61 E-value=47 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.0
Q ss_pred chHHHHHHHhcCCCCcEEEEEEcCC
Q 026149 165 VIPGIEAAVRSMKVGGICRVVIPPS 189 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v~Ipp~ 189 (242)
+..-+-.+|+|.++||.+.+.+|..
T Consensus 119 ~~SPlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 119 IDSPLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 4567889999999999999987653
No 24
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=44.23 E-value=50 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.9
Q ss_pred chHHHHHHHhcCCCCcEEEEEEcCC
Q 026149 165 VIPGIEAAVRSMKVGGICRVVIPPS 189 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v~Ipp~ 189 (242)
+..-|-.+|+|.++||.+.+.+|..
T Consensus 121 ~~SPlG~ALlGk~vGd~v~v~~p~g 145 (157)
T PRK01885 121 IDSPMARALLKKEVGDEVTVNTPAG 145 (157)
T ss_pred ccCHHHHHHhCCCCCCEEEEEcCCC
Confidence 3456889999999999999987753
No 25
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=43.70 E-value=90 Score=26.37 Aligned_cols=51 Identities=24% Similarity=0.280 Sum_probs=35.4
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC-------c-------hHHHHHHHhcCCCCcE
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK-------V-------IPGIEAAVRSMKVGGI 181 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~-------~-------ipgleeaL~gmkvGe~ 181 (242)
..+++||.|.+++-+.+ +|..-|.++ +|.+|... . ....+.++.-+++|-+
T Consensus 81 ~~l~~Gd~v~iD~g~~~---~GY~sD~tR------------T~~vG~~~~~~~~~~~~~~~~~~~ea~~~~~~~~kpG~~ 145 (228)
T cd01089 81 YTLKDGDVVKIDLGCHI---DGYIAVVAH------------TIVVGAEAETPVTGKKADVIAAAHYALEAALRLLRPGNQ 145 (228)
T ss_pred cccCCCCEEEEEEEEEE---CCEEEEEEE------------EEEeCCcCccccchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 46899999999998877 787666544 45666321 1 2456677788888854
No 26
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=43.18 E-value=25 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.8
Q ss_pred chHHHHHHHhcCCCCcEEEEEEcC
Q 026149 165 VIPGIEAAVRSMKVGGICRVVIPP 188 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v~Ipp 188 (242)
...-|-.+|+|.++||.+.+.+|.
T Consensus 42 ~~SPLG~ALlG~~~Gd~v~~~~~~ 65 (77)
T PF01272_consen 42 IDSPLGKALLGKKVGDEVEVELPG 65 (77)
T ss_dssp TTSHHHHHHTT-BTT-EEEEEETT
T ss_pred ecCHHHHHhcCCCCCCEEEEEeCC
Confidence 445788999999999999998875
No 27
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=40.91 E-value=72 Score=28.31 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=36.0
Q ss_pred CCCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC------chHHHHHHHhcCCCCcE
Q 026149 114 RGPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK------VIPGIEAAVRSMKVGGI 181 (242)
Q Consensus 114 ~G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~------~ipgleeaL~gmkvGe~ 181 (242)
+...+++||.|.++.-+.. ||..-|.++ +|.+|... ...+++.++..+++|-+
T Consensus 67 d~~~l~~GDvV~iD~G~~~---dGY~sD~ar------------T~~vg~~~~~l~ea~~~A~~~ai~~ikPG~~ 125 (291)
T cd01088 67 DDTVLKEGDVVKLDFGAHV---DGYIADSAF------------TVDFDPKYDDLLEAAKEALNAAIKEAGPDVR 125 (291)
T ss_pred CCcccCCCCEEEEEEEEEE---CCEEEEEEE------------EEecChhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3456899999999988776 887666544 35555321 23567777777888743
No 28
>COG0024 Map Methionine aminopeptidase [Translation, ribosomal structure and biogenesis]
Probab=38.63 E-value=1.1e+02 Score=27.04 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=37.0
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC------ch----HHHHHHHhcCCCCcE
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK------VI----PGIEAAVRSMKVGGI 181 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~------~i----pgleeaL~gmkvGe~ 181 (242)
..+++||.|.|+..... ||..-|+++ +|.+|... ++ ..|+.++..+++|-+
T Consensus 85 ~vlk~GDiv~IDvg~~~---dG~~~Dsa~------------T~~vg~~~~~~~~~L~~~t~eal~~~I~~vkpG~~ 145 (255)
T COG0024 85 KVLKEGDIVKIDVGAHI---DGYIGDTAI------------TFVVGEVSDEDAKRLLEATKEALYAGIEAVKPGAR 145 (255)
T ss_pred cccCCCCEEEEEEEEEE---CCeeeeEEE------------EEECCCCChHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 46899999999999988 898887654 57777322 22 457777777777743
No 29
>PRK08671 methionine aminopeptidase; Provisional
Probab=37.52 E-value=89 Score=27.71 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=34.7
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCC--C----chHHHHHHHhcCCCCc
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG--K----VIPGIEAAVRSMKVGG 180 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~--~----~ipgleeaL~gmkvGe 180 (242)
...+++||.|.+++-+.. ||...|.++ +|.+|.. . ...+++.++..+++|-
T Consensus 69 ~~~l~~GDvV~iD~G~~~---dGY~aD~ar------------T~~vG~~~~~l~~a~~~a~~aai~~ikpG~ 125 (291)
T PRK08671 69 ERVFPEGDVVKLDLGAHV---DGYIADTAV------------TVDLGGKYEDLVEASEEALEAAIEVVRPGV 125 (291)
T ss_pred CcccCCCCEEEEEEeEEE---CCEEEEEEE------------EEEeChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346899999999998776 887777544 4556632 1 2355666777777773
No 30
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=37.23 E-value=89 Score=27.83 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=34.8
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCC--Cc----hHHHHHHHhcCCCCc
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG--KV----IPGIEAAVRSMKVGG 180 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~--~~----ipgleeaL~gmkvGe 180 (242)
...+++||.|.+++-+.. ||...|.++ +|.+|.. .+ ..+++.++.-+++|-
T Consensus 72 ~~~l~~GDvV~iD~G~~~---dGY~aD~ar------------T~~vG~~~~~l~~a~~~A~~aai~~~kPGv 128 (295)
T TIGR00501 72 KTVFKDGDVVKLDLGAHV---DGYIADTAI------------TVDLGDQYDNLVKAAKDALYTAIKEIRAGV 128 (295)
T ss_pred CccCCCCCEEEEEEeEEE---CCEEEEEEE------------EEEeCcHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356899999999988777 887766544 4566642 22 345666777777773
No 31
>PRK12897 methionine aminopeptidase; Reviewed
Probab=37.00 E-value=1.2e+02 Score=25.86 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCcEE
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGGIC 182 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe~~ 182 (242)
+..+++||.|.+++-+.+ +|..-|.++ +|.+|... +...++.++..+++|-+.
T Consensus 82 ~~~l~~Gd~V~iD~g~~~---~GY~sD~tR------------T~~vG~~s~~~~~~~~~~~~a~~~~i~~~kpG~~~ 143 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNL---NGGLSDSAW------------TYRVGKVSDEAEKLLLVAENALYKGIDQAVIGNRV 143 (248)
T ss_pred CcccCCCCEEEEEeeEEE---CCEEEEEEE------------EEEcCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 457899999999998876 777666543 46666421 234666677788888443
No 32
>PRK12896 methionine aminopeptidase; Reviewed
Probab=30.09 E-value=1.9e+02 Score=24.63 Aligned_cols=50 Identities=28% Similarity=0.377 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCC
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVG 179 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvG 179 (242)
+..++.||.|.+++-+.+ +|..-|.++ +|.+|... +..+++.++..|++|
T Consensus 88 ~~~l~~Gd~v~iD~g~~~---~gY~aD~~R------------T~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG 146 (255)
T PRK12896 88 PRVIKDGDLVNIDVSAYL---DGYHGDTGI------------TFAVGPVSEEAEKLCRVAEEALWAGIKQVKAG 146 (255)
T ss_pred CccCCCCCEEEEEEeEEE---CcEEEeeEE------------EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356899999999998876 676555433 46666421 235666677777777
No 33
>PTZ00053 methionine aminopeptidase 2; Provisional
Probab=29.88 E-value=89 Score=30.08 Aligned_cols=50 Identities=8% Similarity=0.162 Sum_probs=34.2
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCC--C----chHHHHHHHhcCCCCc
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG--K----VIPGIEAAVRSMKVGG 180 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~--~----~ipgleeaL~gmkvGe 180 (242)
..+++||.|.|++-+.+ ||...|.++ +|.+|.. . +..+++.+|.-+++|-
T Consensus 232 ~vLk~GDvVkID~G~~v---dGYiaD~Ar------------Tv~vg~~~~~L~eAv~eA~~aaI~~~kpGv 287 (470)
T PTZ00053 232 TVLTYDDVCKLDFGTHV---NGRIIDCAF------------TVAFNPKYDPLLQATKDATNTGIKEAGIDV 287 (470)
T ss_pred cEecCCCeEEEEEeEEE---CCEEEeEEE------------EEEeCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45899999999999888 899888765 3445521 1 2345566666666663
No 34
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=29.64 E-value=71 Score=17.74 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=9.2
Q ss_pred chhhHHHHHhhhHH
Q 026149 60 STRREALTVSIVTT 73 (242)
Q Consensus 60 ~~rr~~l~~~~~a~ 73 (242)
++||..|..++.+.
T Consensus 2 ~sRR~fLk~~~a~~ 15 (26)
T PF10518_consen 2 LSRRQFLKGGAAAA 15 (26)
T ss_pred CcHHHHHHHHHHHH
Confidence 47888887765443
No 35
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=29.44 E-value=1.4e+02 Score=27.92 Aligned_cols=51 Identities=27% Similarity=0.328 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCC---C-------c----hHHHHHHHhcCCCCcE
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSG---K-------V----IPGIEAAVRSMKVGGI 181 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~---~-------~----ipgleeaL~gmkvGe~ 181 (242)
..+++||.|.|++-+.+ ||..-|.++ +|.+|.. . + ..+++.++.-+++|-+
T Consensus 99 ~~Lk~GDvVkIDlG~~i---dGY~aD~ar------------Tv~vG~~~~~~~t~~~~~l~~aa~~A~~aai~~vkPG~~ 163 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHI---DGFIALVAH------------TFVVGVAQEEPVTGRKADVIAAAHLAAEAALRLVKPGNT 163 (389)
T ss_pred cCcCCCCEEEEEEEEEE---CCEEEEEEE------------EEEECCcccccCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 45899999999999888 898777654 4666631 1 1 2456778888888844
No 36
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=28.36 E-value=1.9e+02 Score=24.51 Aligned_cols=51 Identities=25% Similarity=0.286 Sum_probs=35.0
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCc
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGG 180 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe 180 (242)
...++.||.|.+++-+.. +|..-|.++ +|.+|... +..+++.++.-+++|-
T Consensus 81 ~~~l~~Gd~v~iD~g~~~---~gY~aD~~R------------T~~vG~~~~~~~~~~~~~~~a~~~~~~~~kpG~ 140 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIY---DGYHGDTAK------------TFLVGKISPEAEKLLECTEESLYKAIEEAKPGN 140 (247)
T ss_pred CcccCCCCEEEEEEEEEE---CCEEEEEEE------------EEEcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999877 776666544 46666311 2345666777778773
No 37
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=28.02 E-value=67 Score=23.45 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=8.1
Q ss_pred chhhHHHHHhhhHHhHHH
Q 026149 60 STRREALTVSIVTTTLEI 77 (242)
Q Consensus 60 ~~rr~~l~~~~~a~~l~~ 77 (242)
|.||.+++. +++..|.+
T Consensus 1 MaRRlwiLs-lLAVtLtV 17 (100)
T PF05984_consen 1 MARRLWILS-LLAVTLTV 17 (100)
T ss_pred CchhhHHHH-HHHHHHHH
Confidence 567754443 33433443
No 38
>PRK12318 methionine aminopeptidase; Provisional
Probab=27.95 E-value=2e+02 Score=25.54 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=34.0
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCc
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGG 180 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe 180 (242)
+..+++||.|.+++-+.. +|..-|.++ +|.+|.-. +...++.++..+++|-
T Consensus 123 ~~~l~~GD~V~vD~g~~~---~GY~aDitR------------T~~vG~~~~~~~~~~~~~~~a~~~~i~~~rpG~ 182 (291)
T PRK12318 123 DIPLKNGDIMNIDVSCIV---DGYYGDCSR------------MVMIGEVSEIKKKVCQASLECLNAAIAILKPGI 182 (291)
T ss_pred CCccCCCCEEEEEEeEEE---CcEEEEEEE------------EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356899999999999876 786666544 46666321 2345566666777773
No 39
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=27.82 E-value=2e+02 Score=23.69 Aligned_cols=12 Identities=33% Similarity=0.174 Sum_probs=10.4
Q ss_pred CCCCCCCEEEEE
Q 026149 116 PVPVDGDQVAIH 127 (242)
Q Consensus 116 ~~~~~gd~V~v~ 127 (242)
..++.||.|.++
T Consensus 49 ~~~~rGDiVvf~ 60 (176)
T PRK13838 49 RPVAVGDLVFIC 60 (176)
T ss_pred CCCCCCcEEEEE
Confidence 579999999986
No 40
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=26.80 E-value=1.7e+02 Score=23.64 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred chHHHHHHHhcCCCCcEEEEEEcC
Q 026149 165 VIPGIEAAVRSMKVGGICRVVIPP 188 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v~Ipp 188 (242)
...-|-.+|+|.++||.+.+..|.
T Consensus 121 ~~SPlG~ALlGk~vGD~v~v~~p~ 144 (158)
T PRK05892 121 ADSPLGQALAGHQAGDTVTYSTPQ 144 (158)
T ss_pred cCCHHHHHHhCCCCCCEEEEEcCC
Confidence 445688999999999999997765
No 41
>PLN03158 methionine aminopeptidase; Provisional
Probab=26.49 E-value=2.2e+02 Score=26.68 Aligned_cols=51 Identities=24% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCc
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGG 180 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe 180 (242)
...+++||.|.++..+++ +|..-|.++ +|.+|.-. ....++.++.-+++|-
T Consensus 215 ~r~L~~GDiV~iDvg~~~---~GY~aD~tR------------T~~VG~~~~e~~~l~e~~~eal~~aI~~vkPGv 274 (396)
T PLN03158 215 ARKLEDGDIVNVDVTVYY---KGCHGDLNE------------TFFVGNVDEASRQLVKCTYECLEKAIAIVKPGV 274 (396)
T ss_pred CccCCCCCEEEEEEeEEE---CCEEEeEEe------------EEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 356899999999999887 786665443 46666321 3466777788888883
No 42
>PRK05716 methionine aminopeptidase; Validated
Probab=25.55 E-value=2.5e+02 Score=23.72 Aligned_cols=50 Identities=22% Similarity=0.245 Sum_probs=33.7
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCC
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVG 179 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvG 179 (242)
...+++||.|.+++-+.+ +|..-|.++ +|.+|... +...++.++..|++|
T Consensus 83 ~~~l~~Gd~v~id~g~~~---~gY~~d~~R------------T~~vG~~~~~~~~~~~~~~~~~~~~~~~~~pG 141 (252)
T PRK05716 83 DKVLKEGDIVNIDVTVIK---DGYHGDTSR------------TFGVGEISPEDKRLCEVTKEALYLGIAAVKPG 141 (252)
T ss_pred CcccCCCCEEEEEEEEEE---CCEEEEeEE------------EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 357899999999998876 776666543 46666432 224555666677777
No 43
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=25.38 E-value=2.3e+02 Score=23.71 Aligned_cols=50 Identities=30% Similarity=0.373 Sum_probs=33.1
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCC
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVG 179 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvG 179 (242)
...+++||.|.+++-+.. +|..-|.++ +|.+|... +..+.+.++.-+++|
T Consensus 73 ~~~l~~Gd~v~id~g~~~---~GY~ad~~R------------T~~~G~~~~~~~~~~~~~~~~~~~~~~~~~pG 131 (238)
T cd01086 73 DRVLKDGDIVNIDVGVEL---DGYHGDSAR------------TFIVGEVSEEAKKLVEVTEEALYKGIEAVKPG 131 (238)
T ss_pred CcccCCCCEEEEEEEEEE---CCEEEEEEE------------EEECCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 456899999999998876 776555443 46666421 234455566667776
No 44
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=23.62 E-value=2.1e+02 Score=23.28 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.3
Q ss_pred chHHHHHHHhcCCCCcEEEE
Q 026149 165 VIPGIEAAVRSMKVGGICRV 184 (242)
Q Consensus 165 ~ipgleeaL~gmkvGe~~~v 184 (242)
+..-+-.+|+|.++||...+
T Consensus 130 ~~SPlG~ALlGk~vGD~V~v 149 (160)
T PRK06342 130 YVSPVARALMGKAVGDVVSV 149 (160)
T ss_pred ccCHHHHHHcCCCCCCEEEE
Confidence 34568899999999999987
No 45
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=21.68 E-value=86 Score=25.13 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.1
Q ss_pred CchHHHHHHHhcCCCCcEEEEEEcC
Q 026149 164 KVIPGIEAAVRSMKVGGICRVVIPP 188 (242)
Q Consensus 164 ~~ipgleeaL~gmkvGe~~~v~Ipp 188 (242)
.+..-|-.+|+|.++||.+.|.+|.
T Consensus 121 S~~SPlG~aLlGk~~Gd~v~~~~p~ 145 (157)
T PRK00226 121 SIESPIARALIGKKVGDTVEVTTPG 145 (157)
T ss_pred ccCChHHHHHhCCCCCCEEEEEcCC
Confidence 3456788999999999999998765
No 46
>TIGR02993 ectoine_eutD ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.
Probab=20.81 E-value=2e+02 Score=26.53 Aligned_cols=52 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCcEE
Q 026149 116 PVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGGIC 182 (242)
Q Consensus 116 ~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe~~ 182 (242)
..++.||.|.+++-+.+ +|..-|.+ .+|.+|... +..+.+.++..+|+|-+.
T Consensus 236 ~~l~~gd~v~iD~g~~~---~GY~sD~t------------RT~~vG~p~~~~~~~~~~~~~a~~~~i~~ikpG~~~ 296 (391)
T TIGR02993 236 SPMKVGEGTFFEIAGCY---KRYHCPLS------------RTVFLGKPTQAFLDAEKAVLEGMEAGLEAAKPGNTC 296 (391)
T ss_pred CcccCCCEEEEEeeeec---ccCcccee------------EEEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCcH
Confidence 45789999999988776 66554443 346677422 345667777788887553
No 47
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=20.57 E-value=2e+02 Score=25.40 Aligned_cols=45 Identities=18% Similarity=0.143 Sum_probs=21.0
Q ss_pred hhhHHHHHhhhHHhHHHHhhcccccchHHHHhhhhhhccCCCCCeEEE
Q 026149 61 TRREALTVSIVTTTLEILISSFSASSSAAAAAAAELLELPNSGGVKAL 108 (242)
Q Consensus 61 ~rr~~l~~~~~a~~l~~~~~s~~~~~~~~~~~~~~~~~~~~~sGl~~~ 108 (242)
+||.+|++.+.++ + .++-..++.++-.+...-|..+++..|+.-+
T Consensus 51 srr~~l~~~~ga~--a-~~~~~~pa~aay~~~anvfg~~k~~~gF~~y 95 (260)
T PLN00042 51 SRRAALALLAGAA--A-AGAKVSPANAAYGESANVFGKPKTNTGFLPY 95 (260)
T ss_pred cHHHHHHHHHHHH--H-hhcccCchhhhhcchhhccCCCCCCCCCeEe
Confidence 6665655544331 1 1122333333333444556666666665544
No 48
>PRK15173 peptidase; Provisional
Probab=20.07 E-value=2.3e+02 Score=25.48 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=34.3
Q ss_pred CCCCCCCCEEEEEEEEEEecCCCcEEeeccccCCCCCCCccEEEEcCCCC---------chHHHHHHHhcCCCCcE
Q 026149 115 GPVPVDGDQVAIHYYGRLAAKQGWRFDSTYDHKDQSGEPIPFLFILGSGK---------VIPGIEAAVRSMKVGGI 181 (242)
Q Consensus 115 G~~~~~gd~V~v~Y~~~~~~~dG~~~dss~~~~~~~g~~~p~~f~lG~~~---------~ipgleeaL~gmkvGe~ 181 (242)
+..++.||.|.+++-+.+ +|..-|.++ +|.+|... +..+.+.++..+++|-+
T Consensus 167 ~~~l~~Gd~V~iD~g~~~---~GY~aDitR------------T~~vG~p~~~~~~~y~~v~ea~~~~~~~irPG~~ 227 (323)
T PRK15173 167 NTKACSGDLIKFDCGVDV---DGYGADIAR------------TFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVK 227 (323)
T ss_pred CCccCCCCEEEEEeCccC---CCEeeeeEE------------EEEcCCCCHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 356789999999987755 676555443 46666321 34566667778888844
Done!