BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026150
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3TYE7|TM136_MOUSE Transmembrane protein 136 OS=Mus musculus GN=Tmem136 PE=2 SV=1
Length = 245
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 10/157 (6%)
Query: 35 EASSCLISIFHGTPAVVLATYALLSNKSRGFS---SPNTPLENLVLDFSIAYFATDLLHY 91
E S L++ HG ++ L+ Y + F+ SPNTPL+ VL ++ YF DL
Sbjct: 33 EWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIFDLGWC 92
Query: 92 LVFFPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSA-CQNAWTLACARS 150
+ F L +AHH ++ + L G + ++L +E+T+ Q W L
Sbjct: 93 IYFQSEGPLMLAHHTLSILGIIMALALGESGT-EVNAVLFGSEITNPLLQMRWFLR-ETG 150
Query: 151 HDSEFAGKVYHILSPPFYAFYSVVR-GVLGPMFVYEM 186
H F G V L F A ++ VR GV + EM
Sbjct: 151 HYHSFTGDVVDFL---FVALFTGVRIGVGAHLLFCEM 184
>sp|Q6ZRR5|TM136_HUMAN Transmembrane protein 136 OS=Homo sapiens GN=TMEM136 PE=2 SV=2
Length = 245
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 31 KIRPEASSC-LISIFHGTPAVVLATYALLSNKSRGFS---SPNTPLENLVLDFSIAYFAT 86
K R SC L++ HG ++ L+ Y + F+ SPNTPL+ VL ++ YF
Sbjct: 28 KHRSYEWSCRLVTFTHGVLSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIF 87
Query: 87 DLLHYLVFFPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSA-CQNAWTL 145
DL + F L +AHH ++ + L G + ++L +E+T+ Q W L
Sbjct: 88 DLGWCVYFQSEGALMLAHHTLSILGIIMALVLGESGT-EVNAVLFGSELTNPLLQMRWFL 146
Query: 146 ACARSHDSEFAGKVYHILSPPFYAFYSVVR-GVLGPMFVYEM 186
H F G V L F A ++ VR GV + EM
Sbjct: 147 R-ETGHYHSFTGDVVDFL---FVALFTGVRIGVGACLLFCEM 184
>sp|Q0VD42|TM136_BOVIN Transmembrane protein 136 OS=Bos taurus GN=TMEM136 PE=2 SV=1
Length = 245
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 31 KIRPEASSC-LISIFHGTPAVVLATYALLSNKSRGFS---SPNTPLENLVLDFSIAYFAT 86
K R +C L++ HG ++ L+ Y + F+ SPNTPL+ VL ++ YF
Sbjct: 28 KHRSYEWNCRLVTFTHGILSIGLSAYIGFIDGPWPFTHPGSPNTPLQVHVLCLTLGYFIF 87
Query: 87 DLLHYLVFFPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSA-CQNAWTL 145
DL + F L +AHH ++ + L G + ++L +E+T+ Q W L
Sbjct: 88 DLGWCIYFRSEGPLMLAHHTLSILGIIVALVLGESGT-EVNAVLFGSEITNPLLQIRWFL 146
Query: 146 ACARSHDSEFAGKVYHILSPPFYAFYSVVR-GVLGPMFVYEM 186
H F G V L F A ++ VR GV + EM
Sbjct: 147 R-ETGHYHSFTGDVVDFL---FVALFTGVRIGVGACLLFCEM 184
>sp|Q1LXV8|TM136_DANRE Transmembrane protein 136 OS=Danio rerio GN=tmem136 PE=2 SV=1
Length = 242
Score = 35.8 bits (81), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 10/157 (6%)
Query: 33 RPEASSC-LISIFHGTPAVVLATYALLSNKSRGFSSP---NTPLENLVLDFSIAYFATDL 88
R +C L+++FHG + L Y F+ P NT + L L S+ YF D+
Sbjct: 29 RDSEWNCRLVTLFHGILIICLTAYIGFIAGPWPFTHPGTENTYFQILTLVLSLGYFLFDM 88
Query: 89 LHYLVFFPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSA-CQNAWTLAC 147
+ F + +AHH ++F L L G ++L +E+T+ Q W L
Sbjct: 89 AWCVYFRTEGPVMLAHHTMSIFGILLALGLGESGIET-CAVLFGSEITNPLLQARWFLKR 147
Query: 148 ARSHDSEFAGKVYHILSPPFYAFYSVVRGVLGPMFVY 184
+DS AG V +L F ++ VR +G +Y
Sbjct: 148 MGCYDS-LAGDVVDLL---FILLFASVRIGVGSRMLY 180
>sp|A7MJZ3|SELU_CROS8 tRNA 2-selenouridine synthase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=selU PE=3 SV=1
Length = 377
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 117 CLVSHGAYALLSL---LILAEVTSACQNAWTLACAR 149
C HG A L+L L+ EV A NAW LAC R
Sbjct: 58 CYKQHGQQAALALGHRLVYGEVREARLNAWRLACER 93
>sp|Q96MV1|TMM56_HUMAN Transmembrane protein 56 OS=Homo sapiens GN=TMEM56 PE=1 SV=1
Length = 263
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 13 FFTIYLVAYFVV----------FRSWSPKIRPEASSCLISIFHGTPAVVLATYALLSNKS 62
FFT L+ YFV F S S K + E +S ++S H + Y L +++
Sbjct: 16 FFTFQLLFYFVSYWFSAKVSPGFNSLSFKKKIEWNSRVVSTCHSLVVGIFGLYIFLFDEA 75
Query: 63 RGFSSP---NTPLENLVLDFSIAYFATDLLHYLVFFP--GDVLFIAHHLATLFVFLTCRC 117
+ P L N+ + + Y +DL ++++ GD FI HH A+L+ +
Sbjct: 76 TK-ADPLWGGPSLANVNIAIASGYLISDLSIIILYWKVIGDKFFIMHHCASLYAYY---L 131
Query: 118 LVSHGAYALL-SLLILAEVTSACQN 141
++ +G A + + +LAE++S N
Sbjct: 132 VLKNGVLAYIGNFRLLAELSSPFVN 156
>sp|Q9PJT2|Y746_CHLMU Uncharacterized metallophosphoesterase TC_0746 OS=Chlamydia
muridarum (strain MoPn / Nigg) GN=TC_0746 PE=3 SV=1
Length = 329
Score = 30.8 bits (68), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 22/87 (25%)
Query: 35 EASSCLISIFHGTP-------AVVLAT----------YALLSNKSRGFSSPNTPLENLVL 77
+ + L+SI H TP +V L+ +A + + F++ N L ++L
Sbjct: 176 DPNPHLLSILHNTPFQLLHNQSVTLSDVVNIVGLGDFFAKQFDPKKAFTNYNPTLPGIIL 235
Query: 78 DFSIAYFATDLLHYLVFFPGDVLFIAH 104
+ D +HYL +PGDV+F H
Sbjct: 236 SHN-----PDTIHYLKDYPGDVVFSGH 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.142 0.464
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,816,678
Number of Sequences: 539616
Number of extensions: 3395105
Number of successful extensions: 9100
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 9086
Number of HSP's gapped (non-prelim): 31
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 59 (27.3 bits)