Query 026150
Match_columns 242
No_of_seqs 148 out of 242
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:21:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00724 TLC TRAM, LAG1 and 100.0 5.5E-32 1.2E-36 230.4 14.1 197 31-233 1-204 (205)
2 PF03798 TRAM_LAG1_CLN8: TLC d 100.0 6.1E-30 1.3E-34 214.6 13.3 189 35-227 1-198 (198)
3 KOG4561 Uncharacterized conser 100.0 9.7E-33 2.1E-37 245.3 -4.7 196 25-232 60-266 (281)
4 KOG4474 Uncharacterized conser 99.9 2.2E-26 4.7E-31 201.0 19.9 192 26-229 36-233 (253)
5 KOG1607 Protein transporter of 97.4 0.0032 6.9E-08 57.8 13.2 194 30-236 83-292 (318)
6 COG5058 LAG1 Protein transport 97.0 0.0039 8.5E-08 57.2 8.4 197 24-231 144-365 (395)
7 PF11044 TMEMspv1-c74-12: Plec 66.4 12 0.00025 24.7 3.7 21 220-240 19-40 (49)
8 KOG3966 p53-mediated apoptosis 57.0 18 0.00039 33.0 4.4 106 133-238 55-181 (360)
9 KOG1608 Protein transporter of 52.8 1.3E+02 0.0027 28.0 9.1 156 28-197 111-281 (374)
10 TIGR02106 cyd_oper_ybgT cyd op 39.8 45 0.00098 20.1 2.9 20 204-223 3-25 (30)
11 PHA02690 hypothetical protein; 38.7 48 0.001 24.6 3.5 35 132-178 30-64 (90)
12 PRK14749 hypothetical protein; 33.9 67 0.0015 19.3 2.9 19 205-223 4-25 (30)
13 PF08173 YbgT_YccB: Membrane b 29.2 84 0.0018 18.6 2.8 19 205-223 4-25 (28)
14 PF02674 Colicin_V: Colicin V 24.3 2.4E+02 0.0052 21.9 5.7 52 7-58 64-117 (146)
15 PF05251 UPF0197: Uncharacteri 24.3 2.9E+02 0.0064 20.3 6.8 52 8-59 20-72 (77)
16 PF06814 Lung_7-TM_R: Lung sev 24.0 5.2E+02 0.011 23.0 13.6 52 60-111 35-87 (295)
17 KOG3071 Fatty acyl-CoA elongas 23.3 5.7E+02 0.012 23.2 11.5 85 26-111 48-153 (274)
18 PF15062 ARL6IP6: Haemopoietic 21.6 75 0.0016 23.7 2.0 25 37-61 24-48 (85)
19 COG1114 BrnQ Branched-chain am 20.7 3.7E+02 0.0079 26.1 6.9 81 10-94 120-203 (431)
No 1
>smart00724 TLC TRAM, LAG1 and CLN8 homology domains. Protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis, TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. The family may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains.
Probab=99.98 E-value=5.5e-32 Score=230.38 Aligned_cols=197 Identities=21% Similarity=0.260 Sum_probs=158.6
Q ss_pred CCcccchhHHHHHhhHHHHHHHHHHHHHh--cCC-CCCCCCCChhhhHHHhhhHHHHHHHHHHHHHhc--C--CCchhHH
Q 026150 31 KIRPEASSCLISIFHGTPAVVLATYALLS--NKS-RGFSSPNTPLENLVLDFSIAYFATDLLHYLVFF--P--GDVLFIA 103 (242)
Q Consensus 31 ~~~~ew~nr~vS~~Ha~v~~~~aly~~~~--~p~-~~~~~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~--~d~~~~~ 103 (242)
+|+.||+||.+|.+||++++..+++.... ||. .+...++|+.++...++++|||++|+..++.+. . +++++++
T Consensus 1 ~k~~e~~~~~vs~~hs~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~gYfi~d~~~~~~~~~~~~~d~~~~~~ 80 (205)
T smart00724 1 SKFNESSNRLVSYLHSVIAGLYALYSEPWLSDPKSLYPIQGMSPLAKFYYLFSLGYFIHDLVALLLFQDLKRKDFKEMLV 80 (205)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhccCCcccCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHH
Confidence 47899999999999999999999988863 432 234568999999999999999999999999652 2 3899999
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHHHhhcccceee
Q 026150 104 HHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSVVRGVLGPMFV 183 (242)
Q Consensus 104 HH~~~i~~~~~~~~~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v~Ri~~~p~~~ 183 (242)
||++++.++..+......+...+ . +++.|+||||+|+|++++.. +.+.++++..|+.+|.++|+++|++.+|+..
T Consensus 81 HHv~~~~~~~~~~~~~~~~~~~~-~-~~l~E~s~~fl~~~~~l~~~---~~~~~~~~~~~~~~f~~~f~~~R~~~~p~~~ 155 (205)
T smart00724 81 HHIATLLLISLSYVLNFTRLGLL-L-LLLHELSDPFLHLRKLLNYA---GRKKSLLYDVNFVLFAVVFFVFRLILFPFLI 155 (205)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHH-H-HHHHhhhHHHHHHHHHHHHh---ccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887766444443333 3 37999999999999999554 3456789999999999999999999999988
Q ss_pred EEEeeeeecCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026150 184 YEMCVFYMSGAADPVIPKWVWISWLIVVASAISVSILWVSNLWIQLFRER 233 (242)
Q Consensus 184 ~~~~~~~~~~~~~~~ip~~~~~~w~~~~~~~~~~ni~Wf~ki~~g~~k~~ 233 (242)
++....... ...+..|.+.+..+.+......++|++|+++|.|+..|..
T Consensus 156 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ln~~Wf~~i~~~~~~~~ 204 (205)
T smart00724 156 LTVTVHYAQ-AESGLFPPLLYLLFLLLLLCLQLLNIYWFFLILRMARKLL 204 (205)
T ss_pred HHHHhhhhh-hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 887743332 1222356666677776777778899999999999999853
No 2
>PF03798 TRAM_LAG1_CLN8: TLC domain; InterPro: IPR006634 TLC is a protein domain with at least 5 transmembrane alpha-helices. Lag1p and Lac1p are essential for acyl-CoA-dependent ceramide synthesis [], TRAM is a subunit of the translocon and the CLN8 gene is mutated in Northern epilepsy syndrome. Proteins containing this domain may possess multiple functions such as lipid trafficking, metabolism, or sensing. Trh homologues possess additional homeobox domains [].; GO: 0016021 integral to membrane
Probab=99.97 E-value=6.1e-30 Score=214.57 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=141.8
Q ss_pred cchhHHHHHhhHHHHHHHHHHHHHhcCCC------CCCCCCChhhhHHHhhhHHHHHHHHHHHHHhc--CCC-chhHHHH
Q 026150 35 EASSCLISIFHGTPAVVLATYALLSNKSR------GFSSPNTPLENLVLDFSIAYFATDLLHYLVFF--PGD-VLFIAHH 105 (242)
Q Consensus 35 ew~nr~vS~~Ha~v~~~~aly~~~~~p~~------~~~~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~d-~~~~~HH 105 (242)
||+||++|++|+++++++|++++..+|+. +.-.++++.++...++++|||++|+.+++... .+| +++++||
T Consensus 1 ~~~~~~~s~~h~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gYf~~Dl~~~~~~~~~~~d~~~~~~HH 80 (198)
T PF03798_consen 1 KWNNRVVSFVHAIVSSIWGLYILLNDPELWSDWPDDPWYYSSWLVKFYYAFSLGYFLYDLIVMLLYYRKRGDFWEMLLHH 80 (198)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhcCcHHhhhcccCccCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHH
Confidence 79999999999999999999999987721 11234566788899999999999999999973 234 9999999
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHHHhhcccceeeEE
Q 026150 106 LATLFVFLTCRCLVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSVVRGVLGPMFVYE 185 (242)
Q Consensus 106 ~~~i~~~~~~~~~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v~Ri~~~p~~~~~ 185 (242)
++++.++..+.. .+.+...... .++.|+||||+|+||+++..|.. .+.++.+..|+.+|.++|+++|++.+|+..++
T Consensus 81 ~~~l~~~~~~~~-~~~~~~~~~~-~ll~E~st~fl~~r~~l~~~~~~-~~~~~~~~~~~~~f~~~f~~~Ri~~~~~~~~~ 157 (198)
T PF03798_consen 81 VVTLVLFYFSYF-YNFGRFGIVV-FLLHEISTPFLNLRWFLKYLGGY-SKKSSLYRFNGVLFAVTFFVFRIVLFPYLIYW 157 (198)
T ss_pred HHHHHHHHHhhH-HHHhhHHHHH-HHHHhcccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876654 5555544333 37999999999999999665321 14577899999999999999999999987776
Q ss_pred EeeeeecCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 026150 186 MCVFYMSGAADPVIPKWVWISWLIVVASAISVSILWVSNLWI 227 (242)
Q Consensus 186 ~~~~~~~~~~~~~ip~~~~~~w~~~~~~~~~~ni~Wf~ki~~ 227 (242)
....... ...+..+.+.............++|++|++||+|
T Consensus 158 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~Ln~~W~~~i~r 198 (198)
T PF03798_consen 158 VYWDVWP-LPLWKVPWPVPWIFLVLLLVLFVLNIYWFYLILR 198 (198)
T ss_pred HHHHhcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6631111 1111122333334444444456899999999987
No 3
>KOG4561 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=9.7e-33 Score=245.29 Aligned_cols=196 Identities=19% Similarity=0.289 Sum_probs=151.7
Q ss_pred hhcCCCCCcccch-hHHHHHhhHHHHHHHHHHHHHhcCCCCCCC--------CCChhhhHHHhhhHHHHHHHHHHHHHh-
Q 026150 25 FRSWSPKIRPEAS-SCLISIFHGTPAVVLATYALLSNKSRGFSS--------PNTPLENLVLDFSIAYFATDLLHYLVF- 94 (242)
Q Consensus 25 ~~~l~~~~~~ew~-nr~vS~~Ha~v~~~~aly~~~~~p~~~~~~--------~~t~~~~~~l~~S~GYFi~Dl~~~l~~- 94 (242)
|++++++.|+||| +|+||++|++++. ++|..+.+|.+..|. ..+..+... .|||+.|+.++.+.
T Consensus 60 ~~~l~~k~~i~wn~~~~Vs~~hslv~~--s~y~lf~~~~f~yD~~~~~~~~~~~~~~~~~g----~gy~i~dl~~i~~~~ 133 (281)
T KOG4561|consen 60 YRSLDKKLKIEWNCVRVVSTVHSLVSS--SLYFLFGTPYFHYDKATGYSVVWSKHRDTSVG----IGYFIPDLTWIIVRY 133 (281)
T ss_pred HhhhcCcEEEEEecCceeeeehHhhhc--ccceeecCcccchhhhhccceeecceeecccc----ceEecccceeEEEEe
Confidence 7899999999999 9999999999998 788887666543221 111111111 66999999755544
Q ss_pred -cCCCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHH
Q 026150 95 -FPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSV 173 (242)
Q Consensus 95 -~~~d~~~~~HH~~~i~~~~~~~~~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v 173 (242)
..+|.+|++||+++.+ +..|....++|.+.... ++.+|+||||+|+||++.-+ +.+.+++|.+||++++++|++
T Consensus 134 ~~~~~~~fviHh~~s~~-~v~~~~~~~~g~y~~~~-~L~~ElSTPFvnlrw~L~~~---~~k~Sl~~~vNG~lm~~~F~v 208 (281)
T KOG4561|consen 134 FVLGGIEFVIHHIASLV-FVGCLLRRGVGQYYAGT-FLMAELSTPFVNLRWFLDKA---GQKKSLFYKVNGLLLLVVFFV 208 (281)
T ss_pred eeecCeeEEeeHHHHhh-hheeeEecCccceeeee-eheeecCCceeeHHHHHHHc---CcccchHHHhhhHHHHHHHHH
Confidence 7799999999999933 23355446666654444 48999999999999999544 456689999999999999999
Q ss_pred HhhcccceeeEEEeeeeecCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 026150 174 VRGVLGPMFVYEMCVFYMSGAADPVIPKWVWISWLIVVASAISVSILWVSNLWIQLFRE 232 (242)
Q Consensus 174 ~Ri~~~p~~~~~~~~~~~~~~~~~~ip~~~~~~w~~~~~~~~~~ni~Wf~ki~~g~~k~ 232 (242)
+|+.+.|++.++++..+.. ....+.|......+....+..+++|++||+||.||+.|.
T Consensus 209 ~RIll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~L~v~Nl~Wf~km~~ga~K~ 266 (281)
T KOG4561|consen 209 ARILLWPYMGWHYYWRYQG-LVLNQVPPFLPLFLLGLNALLLVLNLYWFSKMVRGALKV 266 (281)
T ss_pred HHHHHHHHHHHHHHHHHhh-hhhhhhchhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 9999888888888744443 556677877788887777777899999999999999964
No 4
>KOG4474 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=2.2e-26 Score=200.99 Aligned_cols=192 Identities=17% Similarity=0.173 Sum_probs=153.2
Q ss_pred hcCCCCCcccchhHHHHHhhHHHHHHHHHHHHHhcCCCCCC---CCCChhhhHHHhhhHHHHHHHHHHHHHhc--CCCch
Q 026150 26 RSWSPKIRPEASSCLISIFHGTPAVVLATYALLSNKSRGFS---SPNTPLENLVLDFSIAYFATDLLHYLVFF--PGDVL 100 (242)
Q Consensus 26 ~~l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~~p~~~~~---~~~t~~~~~~l~~S~GYFi~Dl~~~l~~~--~~d~~ 100 (242)
|.+++.||.+|.|+.||++||++++.+|.++++.||+. .. .-.+..+..++++|+|||+||+.|++.+. ...+|
T Consensus 36 ~~~s~~~~~r~~n~~VSl~HS~Isg~~a~~~l~~~~~~-~~~~~~~~s~~~~~l~~fS~gYfiyD~vDm~~~~~s~~s~e 114 (253)
T KOG4474|consen 36 RWFSVYQKKRFSNLTVSLLHSTISGLWALLSLLYDPEM-VDDPITYHSLSAYQLLLFSAGYFIYDLVDMLMNEQSELSWE 114 (253)
T ss_pred EeeccccchhhhhhHHHHHHHHHHHHHHHHHHHhCccc-ccCHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcchhhhhHH
Confidence 34677779999999999999999999999999999954 33 34677889999999999999999999995 68999
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHHHhhcccc
Q 026150 101 FIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSVVRGVLGP 180 (242)
Q Consensus 101 ~~~HH~~~i~~~~~~~~~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v~Ri~~~p 180 (242)
++.||++++.+|.++.+.++.++.++.++ ++|++|||+|+|.++++++-. .+.+ .++++-.++.++|+++|.+..-
T Consensus 115 ~LvHH~v~i~aF~~~lf~~~~~~~~~~~l--lmEv~SiFLH~R~il~l~g~s-~~~~-~~rv~v~lN~i~f~~fR~~~~~ 190 (253)
T KOG4474|consen 115 YLVHHVVCIIAFVLGLFYSKFLGYVVAAL--LMEVSSIFLHLRSILKLAGLS-TTLP-SFRVVVYLNLITFFFFRLIPQI 190 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHhCCC-CCCc-hhHHHHHHHHHHHHHHHhccce
Confidence 99999999999999999999998777776 999999999999999887542 2222 6899999999999999998766
Q ss_pred eeeEEEeeeeecCCCCCccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 026150 181 MFVYEMCVFYMSGAADPVIPKWVWISWLIVVAS-AISVSILWVSNLWIQL 229 (242)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~ip~~~~~~w~~~~~~-~~~~ni~Wf~ki~~g~ 229 (242)
|++++... ++ ...| |........... ..++|+.-+.|+.+.+
T Consensus 191 ~l~~~~i~-----~~-~~~~-~~~~~~~~gg~~~l~~~n~~l~~rll~sd 233 (253)
T KOG4474|consen 191 YLTYFLIA-----NA-PFLH-WYLKLFALGGLLCLAVINTVLTLRLLASD 233 (253)
T ss_pred eEEEEEee-----eC-CCcc-eehhHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 66655552 11 1222 111122222222 2359999999999998
No 5
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0032 Score=57.76 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=105.3
Q ss_pred CCCcccchhHHHHHhhHHHHHHHHHHHHHhcCCCCC--------C-CCCChhhhHHHhhhHHHHHHHHHHHHHh--cCCC
Q 026150 30 PKIRPEASSCLISIFHGTPAVVLATYALLSNKSRGF--------S-SPNTPLENLVLDFSIAYFATDLLHYLVF--FPGD 98 (242)
Q Consensus 30 ~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~~p~~~~--------~-~~~t~~~~~~l~~S~GYFi~Dl~~~l~~--~~~d 98 (242)
++++.......=.++==..+.+.++|....+|+... + .++.+..+..=.+=.|+-++-+..+... ..+-
T Consensus 83 ~~~~~k~~Es~Wk~~yy~~s~~~glyV~~~~~wf~~~k~~w~~yP~~~~~~~~k~~Y~~e~gfY~~~l~al~~d~~rkDf 162 (318)
T KOG1607|consen 83 DRRKKKFCESAWKFLYYLVSWIFGLYVMYHEPWFYDTKSFWEGYPDQTLPPSFKAYYLLEAGFYIQLLFALFLDEKRKDF 162 (318)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhhhheecchhhcCHHHHHhcCCCCCCCHHHHHHHHHhhHHHHHHHHHHHhhccccHH
Confidence 333333444444455556677777777766565411 1 1233333333334456655555555443 3355
Q ss_pred chhHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHHHhh
Q 026150 99 VLFIAHHLATLFVFLTCRC--LVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSVVRG 176 (242)
Q Consensus 99 ~~~~~HH~~~i~~~~~~~~--~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v~Ri 176 (242)
+++++||++|+.=+..+.. ..+-|. +.+ .+-.+|-+++-+=..+ +..+. ..+-...=.+|+..|+..|+
T Consensus 163 ~~m~vHHvvTl~Li~lSy~~~f~R~G~---lil-~lhD~SD~~Le~~K~~---nY~~~--~~~~~~~F~~F~~~wi~~RL 233 (318)
T KOG1607|consen 163 WEMVVHHVVTLILISLSYVFNFTRVGT---LIL-ALHDASDVFLELGKML---NYLQF--EAIADFVFVLFAFSWIYTRL 233 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccc---eee-eeecchHHHHHHHHHH---chhhH--HHHHHHHHHHHHHHHHHHHH
Confidence 6899999999865443322 122232 111 4566777777666555 33222 13344444678899999998
Q ss_pred cccceeeEEEeee-eecCCCCCccchhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhccc
Q 026150 177 VLGPMFVYEMCVF-YMSGAADPVIPKWVWISWLIVV--ASAISVSILWVSNLWIQLFRERRGL 236 (242)
Q Consensus 177 ~~~p~~~~~~~~~-~~~~~~~~~ip~~~~~~w~~~~--~~~~~~ni~Wf~ki~~g~~k~~~~~ 236 (242)
...|....+.... +.+.+.++--|. .+++.+ ....+||++|.+-|.|...|.-+++
T Consensus 234 ~~~p~wil~st~~~~~~~~~~~~~~~----~~~~~~lL~~Lqll~i~W~~lI~rm~~r~~~~g 292 (318)
T KOG1607|consen 234 IYYPFWILRSTSREDFSLRQYQPKPS----YYFFNCLLLALQLLHIYWFYLILRMAYRVIKRG 292 (318)
T ss_pred HHHHHHHHHHhHHHHHHhhccCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 8888655444421 111112222222 222233 2234799999999999999765533
No 6
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.0039 Score=57.16 Aligned_cols=197 Identities=13% Similarity=0.118 Sum_probs=106.0
Q ss_pred HhhcCCCCCc-ccchhHHHHHhhHHHHHHHHHHHHHhcCCCCCCC----------CCChhhhHHHhhhHHHHHHHHHHHH
Q 026150 24 VFRSWSPKIR-PEASSCLISIFHGTPAVVLATYALLSNKSRGFSS----------PNTPLENLVLDFSIAYFATDLLHYL 92 (242)
Q Consensus 24 ~~~~l~~~~~-~ew~nr~vS~~Ha~v~~~~aly~~~~~p~~~~~~----------~~t~~~~~~l~~S~GYFi~Dl~~~l 92 (242)
...+...++| ...+-..=+.+--.+.+.+++|+....|.+-++. .|+++-+.---+=.||-+..-....
T Consensus 144 l~~~v~s~kkikRf~eq~y~~fyy~v~g~~Glyvmrss~~w~fntk~l~etyp~~~~p~lfk~fYliqaafw~qQa~ilv 223 (395)
T COG5058 144 LELNVRSEKKIKRFCEQMYAIFYYGVSGPFGLYVMRSSPLWFFNTKALYETYPVFYNPFLFKAFYLIQAAFWAQQACILV 223 (395)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHhhccccceEEEEecCcchhhhhHHHHHhCccccCcHHHHHHHHHHHHHHHHHHhhhe
Confidence 3334444443 5666666677777777777777776666553221 2555555444455677776643333
Q ss_pred Hh--c--CCCchhHHHHHHHHHHHHHHHHhccchhHHHHHH--HHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhh
Q 026150 93 VF--F--PGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSL--LILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPP 166 (242)
Q Consensus 93 ~~--~--~~d~~~~~HH~~~i~~~~~~~~~~~~g~~~~~~l--~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~ 166 (242)
+. . .+-++++.||++++.-+..+... .+.-+++ ...+.+|-|++.+-..+... +. .+-...=-.
T Consensus 224 LqlEkprkD~~elv~HHIVTllLI~lSY~f----hftr~GlAI~itmDvSD~~Ls~sK~lnYl---~~---~l~~~iF~i 293 (395)
T COG5058 224 LQLEKPRKDFKELVFHHIVTLLLIWLSYVF----HFTRMGLAIYITMDVSDFFLSLSKTLNYL---NS---VLATFIFGI 293 (395)
T ss_pred eeecchhhhHHHHHHHHHHHHHHHHHHHHH----HHHhccceEEEEEeccHHHHHHHHHHHHh---hc---hhHHHHHHH
Confidence 33 2 25678999999998765433221 1222222 36789999999988877332 21 222222235
Q ss_pred HHHHHHHHhhcc--cceeeEEEeeeeecCCCCCccchhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 026150 167 FYAFYSVVRGVL--GPMFVYEMCVFYMSGAADPVIPKWVWISWLIV------VASAISVSILWVSNLWIQLFR 231 (242)
Q Consensus 167 f~~~f~v~Ri~~--~p~~~~~~~~~~~~~~~~~~ip~~~~~~w~~~------~~~~~~~ni~Wf~ki~~g~~k 231 (242)
|.+.|+-.|=.+ ..+..... .+-.-|.-.-..|.|..-+|+.- ...+..||++|..-|.|-..|
T Consensus 294 Fv~~wIysRHyln~kIlw~vlt-~~r~~g~~~L~va~~qykcwisl~i~~iLl~aLQlvniyWl~lIvRvayR 365 (395)
T COG5058 294 FVFIWIYSRHYLNLKILWSVLT-AFRTIGNFVLDVATQQYKCWISLPIVFILLQALQLVNIYWLFLIVRVAYR 365 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-chhhcCceeeEeechhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777110 11000000 00000111113455555555211 122346999999999998875
No 7
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=66.44 E-value=12 Score=24.70 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHhh-hccccccc
Q 026150 220 LWVSNLWIQLFRE-RRGLFYKK 240 (242)
Q Consensus 220 ~Wf~ki~~g~~k~-~~~~~~~k 240 (242)
.|+.-..-+-+|. |.+|++||
T Consensus 19 ~~iGl~IyQkikqIrgKkk~KK 40 (49)
T PF11044_consen 19 AWIGLSIYQKIKQIRGKKKEKK 40 (49)
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 4554444444443 33444444
No 8
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=56.98 E-value=18 Score=33.01 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=60.1
Q ss_pred hhhchhhHHHHHHHHhcCC---------CCcccchhh---hhhhhhHHHHHHHHhhcccceeeEEEeeeeecCCCCCccc
Q 026150 133 AEVTSACQNAWTLACARSH---------DSEFAGKVY---HILSPPFYAFYSVVRGVLGPMFVYEMCVFYMSGAADPVIP 200 (242)
Q Consensus 133 ~Evsspfln~R~~l~~~~~---------~~~~~t~~y---~~n~~~f~~~f~v~Ri~~~p~~~~~~~~~~~~~~~~~~ip 200 (242)
+|..-|=--.|++|.++|. +.+..++.+ ..||-.|-+.++++-=+..|.+=.....++......+.+.
T Consensus 55 ~~ee~~~r~~~~vL~~rrp~~~~~k~~~Ep~i~k~~F~cc~wngg~~w~s~llf~~v~ipiL~~~~s~f~g~~s~h~~vw 134 (360)
T KOG3966|consen 55 VKEEPPKRVERTVLMMRRPKQGIFKRPPEPPIKKDSFLCCLWNGGAMWISFLLFWQVCIPILGLFFSFFDGTDSGHNVVW 134 (360)
T ss_pred hhhcCCchHHHHHHhhcCcccccccCCCCCchHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHheeccCCccccchH
Confidence 3444444456677765543 122233333 4677778777777766666765444444554422333343
Q ss_pred hhh--------HHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccc
Q 026150 201 KWV--------WISWLIVVASA-ISVSILWVSNLWIQLFRERRGLFY 238 (242)
Q Consensus 201 ~~~--------~~~w~~~~~~~-~~~ni~Wf~ki~~g~~k~~~~~~~ 238 (242)
.|. ..-|+..+-++ -++|..||..|...++|.+|+|.+
T Consensus 135 ~wl~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~rv~k~~P~ 181 (360)
T KOG3966|consen 135 GWLHPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAMRVLKLPPP 181 (360)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 332 12233333223 269999999999999988777643
No 9
>KOG1608 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.83 E-value=1.3e+02 Score=28.01 Aligned_cols=156 Identities=14% Similarity=0.069 Sum_probs=69.3
Q ss_pred CCCCCcccchhHHHHHhhHHHHHHHHHHHHHh-----cCCC-CCCCCCC---hhhhHHHhhhHHHHHHHHHHHHHh----
Q 026150 28 WSPKIRPEASSCLISIFHGTPAVVLATYALLS-----NKSR-GFSSPNT---PLENLVLDFSIAYFATDLLHYLVF---- 94 (242)
Q Consensus 28 l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~-----~p~~-~~~~~~t---~~~~~~l~~S~GYFi~Dl~~~l~~---- 94 (242)
+++-+...+|-..==.+--+.+.++|.|.+.. ||.. =.+-|+. -..++--..-++|.+.-+=-....
T Consensus 111 lSK~k~~kFnESgql~~Fy~~S~vwg~~ili~E~yl~~p~~lW~~yPh~~msfq~Kffyi~QlaYwlHafPElYfQK~Kk 190 (374)
T KOG1608|consen 111 LSKVKHSKFNESGQLVAFYLFSCVWGFYILISEGYLSDPTSLWEGYPHRVMSFQMKFFYISQLAYWLHAFPELYFQKTKK 190 (374)
T ss_pred hhHhhhhhhccCCeeeehhhHHhhhhheeeeecccccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHChHHHHHHHhh
Confidence 34444444544332222234556666666653 4421 0112322 222333333456665554433322
Q ss_pred --cCCCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHH
Q 026150 95 --FPGDVLFIAHHLATLFVFLTCRCLVSHGAYALLSLLILAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYS 172 (242)
Q Consensus 95 --~~~d~~~~~HH~~~i~~~~~~~~~~~~g~~~~~~l~~l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~ 172 (242)
.|....+++=|+.-|.+ .+.+...+-++.++.+--.+|. .-|+-.+....++ +..|++.++ .+.|.
T Consensus 191 eeiprqlvyi~l~l~hI~g--AYllnl~rlgLvLl~LhYftel---lfHi~rlfyf~de---k~~k~fslw----a~vF~ 258 (374)
T KOG1608|consen 191 EEIPRQLVYIILHLFHIAG--AYLLNLNRLGLVLLTLHYFTEL---LFHIARLFYFSDE---KYQKLFSLW----AAVFV 258 (374)
T ss_pred hhccHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHH---HHHHHHHheeccc---chhHHHHHH----HHHHH
Confidence 22334466666655544 2223333344444444344443 3455555544333 344555554 45667
Q ss_pred HHhhcccceeeEEEeeeeecCCCCC
Q 026150 173 VVRGVLGPMFVYEMCVFYMSGAADP 197 (242)
Q Consensus 173 v~Ri~~~p~~~~~~~~~~~~~~~~~ 197 (242)
+.|.+... ...+...|+.+++++
T Consensus 259 l~Rl~tli--iaVlt~gfgla~~en 281 (374)
T KOG1608|consen 259 LGRLGTLI--IAVLTVGFGLAGAEN 281 (374)
T ss_pred HHHHHHHH--HHHHHHHhhhccccc
Confidence 77874433 333443454444444
No 10
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=39.76 E-value=45 Score=20.10 Aligned_cols=20 Identities=15% Similarity=0.677 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHH
Q 026150 204 WISWLIVVASAI---SVSILWVS 223 (242)
Q Consensus 204 ~~~w~~~~~~~~---~~ni~Wf~ 223 (242)
+..|++.++.+. ++|.+|+-
T Consensus 3 YfaWilG~~lA~~~~v~~a~w~E 25 (30)
T TIGR02106 3 YFAWILGTLLACAFGVLNAMWLE 25 (30)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888887765 48999985
No 11
>PHA02690 hypothetical protein; Provisional
Probab=38.69 E-value=48 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=25.7
Q ss_pred HhhhchhhHHHHHHHHhcCCCCcccchhhhhhhhhHHHHHHHHhhcc
Q 026150 132 LAEVTSACQNAWTLACARSHDSEFAGKVYHILSPPFYAFYSVVRGVL 178 (242)
Q Consensus 132 l~Evsspfln~R~~l~~~~~~~~~~t~~y~~n~~~f~~~f~v~Ri~~ 178 (242)
=.|-|+|.+..-|-+ +|.+.--.|.++|+++|+++
T Consensus 30 hlEgs~plLR~~~Rl------------LfDL~lTvfV~myiv~Rl~~ 64 (90)
T PHA02690 30 HLEGSTPLLRQMWRL------------LFDLLLTVFVVMYIVFRLIW 64 (90)
T ss_pred HHhcCCHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 568888886444433 47777788899999999864
No 12
>PRK14749 hypothetical protein; Provisional
Probab=33.92 E-value=67 Score=19.31 Aligned_cols=19 Identities=11% Similarity=0.669 Sum_probs=14.1
Q ss_pred HHHHHHHHHHH---HHHHHHHH
Q 026150 205 ISWLIVVASAI---SVSILWVS 223 (242)
Q Consensus 205 ~~w~~~~~~~~---~~ni~Wf~ 223 (242)
..|++.++.+- ++|.+|+-
T Consensus 4 faWiLG~~lAc~f~ilna~w~E 25 (30)
T PRK14749 4 LLWFVGILLMCSLSTLVLVWLD 25 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 46877777753 49999986
No 13
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=29.18 E-value=84 Score=18.61 Aligned_cols=19 Identities=21% Similarity=0.686 Sum_probs=13.9
Q ss_pred HHHHHHHHHHH---HHHHHHHH
Q 026150 205 ISWLIVVASAI---SVSILWVS 223 (242)
Q Consensus 205 ~~w~~~~~~~~---~~ni~Wf~ 223 (242)
..|++.++.+. ++|.+|.-
T Consensus 4 faWilG~~lA~~~~i~~a~wlE 25 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWLE 25 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 46887787764 48889874
No 14
>PF02674 Colicin_V: Colicin V production protein; InterPro: IPR003825 Colicin V is a small extracellular protein toxin which kills sensitive cells by disrupting their membrane potential []. Colicin V is produced from large low-copy plasmids and requires four plasmid genes for synthesis export and immunity [ 3034857). The cvaC gene is the structural gene for colicin V and cvaA and cvaB are required for processing and export of the toxin through the inner and outer membranes cvi confers immunity to the host cell. There are several stages at which host factors could play a role in colicin V production and mutations that alter any of these functions should result in lowered levels of extracellular colicin V ]. Colicin V production protein is required in Escherichia coli for colicin V production from plasmid pColV-K30 []. This entry represent the CvpA protein, which is involved in colicin V production. It is coded for by the cvpA gene, which is found upstream of the purF gene in the purF operon []. ; GO: 0009403 toxin biosynthetic process, 0016020 membrane
Probab=24.29 E-value=2.4e+02 Score=21.95 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHH--hhcCCCCCcccchhHHHHHhhHHHHHHHHHHHHH
Q 026150 7 ILFLLMFFTIYLVAYFVV--FRSWSPKIRPEASSCLISIFHGTPAVVLATYALL 58 (242)
Q Consensus 7 ~~f~~~f~~~~~~~~~~~--~~~l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~ 58 (242)
.+|++.|...+.+..... .++..++++.++-||....+=|.+.+.+-++.++
T Consensus 64 iaf~~~f~~~~~i~~~i~~~l~~~~~~~~~~~~dr~lG~~~G~~~~~li~~~~~ 117 (146)
T PF02674_consen 64 IAFIILFVLVYIIVRIIGKLLRRIVKKPFLGWLDRLLGALLGLAKGLLILSLLL 117 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544442 3555577889999999988877777776666444
No 15
>PF05251 UPF0197: Uncharacterised protein family (UPF0197); InterPro: IPR007915 This family of proteins is functionally uncharacterised, but is thought to be a transmembrane protein.
Probab=24.28 E-value=2.9e+02 Score=20.26 Aligned_cols=52 Identities=19% Similarity=0.297 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhc-CCCCCcccchhHHHHHhhHHHHHHHHHHHHHh
Q 026150 8 LFLLMFFTIYLVAYFVVFRS-WSPKIRPEASSCLISIFHGTPAVVLATYALLS 59 (242)
Q Consensus 8 ~f~~~f~~~~~~~~~~~~~~-l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~ 59 (242)
+++.....+++.++|++|.- -++++|.-..--.++.+-++..+.+.+..++.
T Consensus 20 a~vll~iGl~fta~Ffiyevts~k~~r~i~kEl~~a~vAS~flGfG~lFLlL~ 72 (77)
T PF05251_consen 20 AVVLLAIGLFFTAWFFIYEVTSTKKTRSIAKELLIALVASLFLGFGSLFLLLW 72 (77)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccccHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455567888999999853 45667777888888899999888888776653
No 16
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=23.98 E-value=5.2e+02 Score=23.00 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=37.6
Q ss_pred cCCCCCCCCCChhhhHHHhhhHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHH
Q 026150 60 NKSRGFSSPNTPLENLVLDFSIAYFATDLLHYLVF-FPGDVLFIAHHLATLFV 111 (242)
Q Consensus 60 ~p~~~~~~~~t~~~~~~l~~S~GYFi~Dl~~~l~~-~~~d~~~~~HH~~~i~~ 111 (242)
+|...+++...|+-..-...++.|.+....+.... ...+-..-+||.++..-
T Consensus 35 N~~gyL~a~~~pl~~~y~~~~i~y~~~~~~W~~~~~~~~~~~~~ih~~i~~vl 87 (295)
T PF06814_consen 35 NPYGYLPAGEYPLPPFYGVMSIVYAVLLIIWLFLCFKNRKSVLPIHYLILAVL 87 (295)
T ss_pred CCCCCCChhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 55545666677777888889999999999988876 22334667899776544
No 17
>KOG3071 consensus Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme [Lipid transport and metabolism]
Probab=23.31 E-value=5.7e+02 Score=23.23 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=51.0
Q ss_pred hcCCCCCcccchhHHHHHhhHHHHHHHHHHHHHhcCCC-------C-----CCCCCChhhhHHHhhhHHHHHHHHHHHH-
Q 026150 26 RSWSPKIRPEASSCLISIFHGTPAVVLATYALLSNKSR-------G-----FSSPNTPLENLVLDFSIAYFATDLLHYL- 92 (242)
Q Consensus 26 ~~l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~~p~~-------~-----~~~~~t~~~~~~l~~S~GYFi~Dl~~~l- 92 (242)
+++-+++ .-.+=|.++.+|-+.-++.+.+.+...+.. + ....+++......-.+-.|++.-+++.+
T Consensus 48 ~~~m~nr-kp~~l~~~~~vyN~~~vl~s~~i~~~~~~~~~~~~~y~l~c~~~~~~~~~~~~r~~~~~~~yylsKflel~D 126 (274)
T KOG3071|consen 48 PKLMRNR-KPLKLRGLSQVYNLGQVLLSAAIFLEGELWRWLKTAYNLRCQPCFPSDHEPKLRERFWSYLYYLSKFLELLD 126 (274)
T ss_pred HhhhccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccceEEEecCCCCCCcceeehHHHHHHHHHHHHHHHh
Confidence 3443433 347889999999999888888844432111 0 1112455555566677788876555444
Q ss_pred --Hh------cCCCchhHHHHHHHHHH
Q 026150 93 --VF------FPGDVLFIAHHLATLFV 111 (242)
Q Consensus 93 --~~------~~~d~~~~~HH~~~i~~ 111 (242)
.+ ..-+..-+.||......
T Consensus 127 TvFfVLRKk~rqlsFLHvyHH~~m~~~ 153 (274)
T KOG3071|consen 127 TVFFVLRKKDRQLSFLHVYHHGVMAFL 153 (274)
T ss_pred heeeEEEccCCceEEEEEEecchHHHh
Confidence 33 12345678999887554
No 18
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=21.57 E-value=75 Score=23.74 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=20.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHhcC
Q 026150 37 SSCLISIFHGTPAVVLATYALLSNK 61 (242)
Q Consensus 37 ~nr~vS~~Ha~v~~~~aly~~~~~p 61 (242)
++++.|+.=|++++..+-..++.|.
T Consensus 24 ~~~~~~ll~Gllv~~Ft~~ivYlDS 48 (85)
T PF15062_consen 24 GSLLSSLLCGLLVCSFTWTIVYLDS 48 (85)
T ss_pred hHHHHHHHHHHHHHHhhheeEEecc
Confidence 4489999999998888888887754
No 19
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=20.68 E-value=3.7e+02 Score=26.10 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=49.6
Q ss_pred HHHHHHHH-HHHHHHHhhcCCCCCcccchhHHHHHhhHHHHHHHHHHHHHhcCCCCCCCCCChh--hhHHHhhhHHHHHH
Q 026150 10 LLMFFTIY-LVAYFVVFRSWSPKIRPEASSCLISIFHGTPAVVLATYALLSNKSRGFSSPNTPL--ENLVLDFSIAYFAT 86 (242)
Q Consensus 10 ~~~f~~~~-~~~~~~~~~~l~~~~~~ew~nr~vS~~Ha~v~~~~aly~~~~~p~~~~~~~~t~~--~~~~l~~S~GYFi~ 86 (242)
+..|..+| .+++++ +++|.|=.||--++.+-+=-+...++.+-.+ ..|..+..+++..+ |-+.-++.=||..+
T Consensus 120 l~ifs~ifF~ia~~~---sl~psklid~vGk~LTPilLv~l~il~i~~~-~~p~g~~~~a~~~y~~~pf~~GfleGY~TM 195 (431)
T COG1114 120 LFIFSVIFFAIAYLF---SLNPSKLIDRVGKFLTPILLVLLLILVIAAI-IPPAGPISAASGAYQSQPFSKGFLEGYLTM 195 (431)
T ss_pred HHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHhHHHHHHHHHHHHHHH-hCCCCCcccccHHHHhChHHHHHhcchHHH
Confidence 34444444 445544 3567787888877777666666666555533 35544344333333 44556788899999
Q ss_pred HHHHHHHh
Q 026150 87 DLLHYLVF 94 (242)
Q Consensus 87 Dl~~~l~~ 94 (242)
|.+.-+.+
T Consensus 196 DaLAal~F 203 (431)
T COG1114 196 DALAALAF 203 (431)
T ss_pred HHHHHHHH
Confidence 99865554
Done!