Query 026150
Match_columns 242
No_of_seqs 148 out of 242
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 58.3 29 0.001 22.8 5.6 42 194-238 5-47 (54)
2 2jwa_A Receptor tyrosine-prote 9.0 3.9E+02 0.013 16.5 4.5 12 229-240 33-44 (44)
3 2l8s_A Integrin alpha-1; trans 6.7 5.7E+02 0.019 16.5 5.5 9 197-205 5-13 (54)
4 2knc_B Integrin beta-3; transm 5.7 4.3E+02 0.015 18.2 2.8 11 219-229 28-38 (79)
5 1nwd_B GAD, glutamate decarbox 4.7 4.8E+02 0.017 14.1 2.0 13 223-235 15-27 (28)
6 2k1a_A Integrin alpha-IIB; sin 4.7 6.8E+02 0.023 15.2 3.7 12 194-205 3-14 (42)
7 3arc_J Photosystem II reaction 4.4 7.1E+02 0.024 15.0 3.6 9 195-203 4-12 (40)
8 3jqo_C TRAN protein; helical o 3.9 2E+02 0.0068 16.9 -0.1 12 29-40 6-17 (34)
9 3twe_A Alpha4H; unknown functi 3.5 1.7E+02 0.0057 15.9 -0.6 11 230-240 13-23 (27)
10 3kda_A CFTR inhibitory factor 3.4 4.5E+02 0.016 20.3 1.8 22 219-240 280-301 (301)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=58.27 E-value=29 Score=22.77 Aligned_cols=42 Identities=19% Similarity=0.411 Sum_probs=18.3
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccc
Q 026150 194 AADPVIPKWVWISWLIVVASAISVSILWVSNLWI-QLFRERRGLFY 238 (242)
Q Consensus 194 ~~~~~ip~~~~~~w~~~~~~~~~~ni~Wf~ki~~-g~~k~~~~~~~ 238 (242)
+.+..+|.|+.+.- +..++.+=..-.+-+|| |.+|+++++.+
T Consensus 5 ~~~~~vp~wiIi~s---vl~GLllL~li~~~LwK~GFFkR~~~~~~ 47 (54)
T 2knc_A 5 SEERAIPIWWVLVG---VLGGLLLLTILVLAMWKVGFFKRNRPPLE 47 (54)
T ss_dssp CTTTTCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHTTTTCCSCC
T ss_pred ccCCCcchHHHHHH---HHHHHHHHHHHHHHHHHcCcccCCCCCcc
Confidence 34456787654433 12222222222233333 77765554433
No 2
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=8.97 E-value=3.9e+02 Score=16.54 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.4
Q ss_pred HHhhhccccccc
Q 026150 229 LFRERRGLFYKK 240 (242)
Q Consensus 229 ~~k~~~~~~~~k 240 (242)
.+-+||+..+||
T Consensus 33 ~~~RRR~~~~kK 44 (44)
T 2jwa_A 33 ILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHCSCCCC
T ss_pred hheehhhhhccC
Confidence 333444444555
No 3
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=6.66 E-value=5.7e+02 Score=16.50 Aligned_cols=9 Identities=33% Similarity=0.874 Sum_probs=5.3
Q ss_pred CccchhhHH
Q 026150 197 PVIPKWVWI 205 (242)
Q Consensus 197 ~~ip~~~~~ 205 (242)
..+|.|+.+
T Consensus 5 ~~vp~WiIi 13 (54)
T 2l8s_A 5 GRVPLWVIL 13 (54)
T ss_dssp CCCCTHHHH
T ss_pred ccCchHHHH
Confidence 357776544
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=5.69 E-value=4.3e+02 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 026150 219 ILWVSNLWIQL 229 (242)
Q Consensus 219 i~Wf~ki~~g~ 229 (242)
++-.+|++...
T Consensus 28 llliwk~~~~i 38 (79)
T 2knc_B 28 ALLIWKLLITI 38 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34445555444
No 5
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=4.71 E-value=4.8e+02 Score=14.15 Aligned_cols=13 Identities=15% Similarity=0.552 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhcc
Q 026150 223 SNLWIQLFRERRG 235 (242)
Q Consensus 223 ~ki~~g~~k~~~~ 235 (242)
..-||..+.|+++
T Consensus 15 itawkkfveekkk 27 (28)
T 1nwd_B 15 ITAWKKFVEEKKK 27 (28)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhc
Confidence 3446666655443
No 6
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=4.67 E-value=6.8e+02 Score=15.15 Aligned_cols=12 Identities=25% Similarity=0.612 Sum_probs=7.1
Q ss_pred CCCCccchhhHH
Q 026150 194 AADPVIPKWVWI 205 (242)
Q Consensus 194 ~~~~~ip~~~~~ 205 (242)
+.+..+|.|+..
T Consensus 3 ~~~~~vp~wiIi 14 (42)
T 2k1a_A 3 LEERAIPIWWVL 14 (42)
T ss_dssp SSCCCCCHHHHH
T ss_pred CCcCCcchHHHH
Confidence 344568876544
No 7
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=4.43 E-value=7.1e+02 Score=15.05 Aligned_cols=9 Identities=33% Similarity=0.863 Sum_probs=6.5
Q ss_pred CCCccchhh
Q 026150 195 ADPVIPKWV 203 (242)
Q Consensus 195 ~~~~ip~~~ 203 (242)
..+|||.|+
T Consensus 4 ~tGRiPLWl 12 (40)
T 3arc_J 4 EGGRIPLWI 12 (40)
T ss_dssp CTTSSCHHH
T ss_pred CcCcccEEe
Confidence 457999765
No 8
>3jqo_C TRAN protein; helical outer membrane TM, outer membrane protein complex, plasmid, transport protein; HET: LDA; 2.60A {Escherichia coli} PDB: 2ofq_B
Probab=3.88 E-value=2e+02 Score=16.89 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=7.8
Q ss_pred CCCCcccchhHH
Q 026150 29 SPKIRPEASSCL 40 (242)
Q Consensus 29 ~~~~~~ew~nr~ 40 (242)
.+++..||+||+
T Consensus 6 kp~pepd~~n~V 17 (34)
T 3jqo_C 6 KPPPEPDWSNTV 17 (34)
T ss_dssp CCCCCCCCSSEE
T ss_pred CCCCCCcccccc
Confidence 356677777764
No 9
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=3.47 E-value=1.7e+02 Score=15.92 Aligned_cols=11 Identities=36% Similarity=0.398 Sum_probs=6.1
Q ss_pred Hhhhccccccc
Q 026150 230 FRERRGLFYKK 240 (242)
Q Consensus 230 ~k~~~~~~~~k 240 (242)
..||-+|.+||
T Consensus 13 lqerlrklrkk 23 (27)
T 3twe_A 13 LQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35565555555
No 10
>3kda_A CFTR inhibitory factor (CIF); alpha/beta hydrolase, hydrolase; 1.50A {Pseudomonas aeruginosa ucbpp-pa14} PDB: 3kd2_A 3pi6_A
Probab=3.45 E-value=4.5e+02 Score=20.34 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhccccccc
Q 026150 219 ILWVSNLWIQLFRERRGLFYKK 240 (242)
Q Consensus 219 i~Wf~ki~~g~~k~~~~~~~~k 240 (242)
-=-+.++++..+|+.+++.+||
T Consensus 280 p~~~~~~i~~~l~~~~~~~~~~ 301 (301)
T 3kda_A 280 AAPMNRLVIDFLSRGRHHHHHH 301 (301)
T ss_dssp HHHHHHHHHHHHTTSCCCC---
T ss_pred HHHHHHHHHHHHhhCchhhccC
Confidence 3667888899998777666665
Done!