Query 026151
Match_columns 242
No_of_seqs 137 out of 830
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:22:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026151.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026151hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2659 LisH motif-containing 100.0 9.5E-42 2.1E-46 285.6 21.6 219 22-240 8-228 (228)
2 PF10607 CLTH: CTLH/CRA C-term 100.0 4.9E-30 1.1E-34 204.6 14.3 140 78-220 2-144 (145)
3 KOG0396 Uncharacterized conser 100.0 1E-28 2.2E-33 217.4 17.6 178 39-219 114-292 (389)
4 KOG2817 Predicted E3 ubiquitin 99.9 1.4E-22 2.9E-27 180.7 18.6 201 33-236 108-329 (394)
5 smart00757 CRA CT11-RanBPM. pr 99.7 1.4E-16 3.1E-21 118.7 11.1 93 131-223 2-96 (99)
6 smart00668 CTLH C-terminal to 99.3 1.9E-12 4.1E-17 87.1 5.6 55 78-132 2-56 (58)
7 KOG0293 WD40 repeat-containing 99.2 3.3E-10 7.1E-15 102.1 12.0 170 40-219 17-188 (519)
8 PF08513 LisH: LisH; InterPro 98.4 4.9E-07 1.1E-11 51.4 3.9 27 41-67 1-27 (27)
9 smart00667 LisH Lissencephaly 98.2 4.4E-06 9.5E-11 49.3 4.7 32 39-70 2-33 (34)
10 KOG1477 SPRY domain-containing 98.1 4E-07 8.6E-12 85.5 -0.5 181 40-220 249-450 (469)
11 KOG0275 Conserved WD40 repeat- 97.9 0.00014 3E-09 64.6 10.8 164 37-218 4-172 (508)
12 COG5109 Uncharacterized conser 97.3 0.0077 1.7E-07 53.4 13.7 191 20-217 81-298 (396)
13 KOG1333 Uncharacterized conser 95.3 0.22 4.8E-06 41.7 9.8 142 41-190 6-159 (241)
14 PF09398 FOP_dimer: FOP N term 89.6 0.79 1.7E-05 32.9 4.6 31 41-71 19-49 (81)
15 PF14559 TPR_19: Tetratricopep 75.5 19 0.0004 23.5 6.7 55 87-146 1-55 (68)
16 PF04494 TFIID_90kDa: WD40 ass 75.3 9.4 0.0002 30.1 5.8 48 112-162 38-85 (142)
17 cd08044 TAF5_NTD2 TAF5_NTD2 is 74.2 1.5 3.2E-05 34.3 0.9 49 112-163 27-75 (133)
18 PF01726 LexA_DNA_bind: LexA D 71.7 5.4 0.00012 27.2 3.2 36 36-71 4-39 (65)
19 PF07035 Mic1: Colon cancer-as 62.6 64 0.0014 26.3 8.2 84 41-142 29-115 (167)
20 PF04053 Coatomer_WDAD: Coatom 62.3 45 0.00098 31.5 8.4 76 43-141 297-372 (443)
21 KOG2051 Nonsense-mediated mRNA 62.0 74 0.0016 33.3 10.1 179 37-215 437-639 (1128)
22 PF10607 CLTH: CTLH/CRA C-term 59.6 30 0.00065 26.7 5.8 58 46-104 7-67 (145)
23 PF06588 Muskelin_N: Muskelin 58.9 16 0.00035 30.6 4.2 31 41-71 166-196 (199)
24 KOG1585 Protein required for f 58.5 58 0.0012 28.7 7.6 75 28-102 178-252 (308)
25 KOG4594 Sequence-specific sing 55.9 14 0.0003 32.8 3.4 29 39-67 16-44 (354)
26 TIGR03362 VI_chp_7 type VI sec 54.6 1.6E+02 0.0035 26.3 10.8 102 37-140 129-274 (301)
27 KOG0273 Beta-transducin family 54.3 3.9 8.4E-05 38.5 -0.2 34 37-70 2-35 (524)
28 PF07079 DUF1347: Protein of u 51.4 2.1E+02 0.0045 27.5 10.4 54 78-131 129-190 (549)
29 smart00668 CTLH C-terminal to 50.5 26 0.00056 22.4 3.4 27 120-146 5-31 (58)
30 PF04840 Vps16_C: Vps16, C-ter 48.9 2E+02 0.0044 25.8 10.8 82 43-141 180-262 (319)
31 PF12895 Apc3: Anaphase-promot 46.8 76 0.0017 21.7 5.7 51 84-140 32-82 (84)
32 PF13934 ELYS: Nuclear pore co 45.4 1.9E+02 0.0041 24.5 9.5 46 26-71 29-77 (226)
33 KOG2437 Muskelin [Signal trans 45.4 90 0.002 30.3 7.2 37 112-149 621-657 (723)
34 PF13838 Clathrin_H_link: Clat 44.5 34 0.00073 23.5 3.3 40 117-158 7-47 (66)
35 COG5443 FlbT Flagellar biosynt 44.3 40 0.00086 26.4 4.0 58 50-107 65-124 (148)
36 KOG2659 LisH motif-containing 43.0 1.7E+02 0.0036 25.2 7.9 69 39-107 61-133 (228)
37 PF14276 DUF4363: Domain of un 41.0 45 0.00098 25.2 4.0 47 79-125 30-76 (121)
38 PF04840 Vps16_C: Vps16, C-ter 40.0 1.4E+02 0.0031 26.8 7.5 59 37-102 204-262 (319)
39 PF13371 TPR_9: Tetratricopept 38.6 1.1E+02 0.0024 19.9 5.8 53 87-144 5-57 (73)
40 KOG0263 Transcription initiati 37.9 62 0.0013 32.3 5.1 34 37-70 18-51 (707)
41 KOG1538 Uncharacterized conser 36.2 1.2E+02 0.0025 30.6 6.6 60 81-141 776-842 (1081)
42 PF03997 VPS28: VPS28 protein; 36.0 98 0.0021 25.8 5.4 56 4-70 4-64 (188)
43 PRK10564 maltose regulon perip 34.1 46 0.00099 29.9 3.3 24 80-103 260-283 (303)
44 PF07721 TPR_4: Tetratricopept 34.0 54 0.0012 17.5 2.5 17 85-101 9-25 (26)
45 KOG1156 N-terminal acetyltrans 33.5 5.1E+02 0.011 26.0 15.1 126 80-212 188-332 (700)
46 PF14689 SPOB_a: Sensor_kinase 33.1 93 0.002 20.7 4.1 33 75-107 21-53 (62)
47 PF01158 Ribosomal_L36e: Ribos 32.5 99 0.0022 23.0 4.4 33 116-148 48-80 (98)
48 PRK02289 4-oxalocrotonate taut 32.0 64 0.0014 21.1 3.1 27 178-204 12-38 (60)
49 PF10602 RPN7: 26S proteasome 31.2 2.9E+02 0.0062 22.4 14.1 104 42-146 37-143 (177)
50 PTZ00196 60S ribosomal protein 30.5 92 0.002 23.1 3.9 33 116-148 48-80 (98)
51 PF07729 FCD: FCD domain; Int 30.0 94 0.002 22.2 4.1 27 77-103 96-122 (125)
52 PF10827 DUF2552: Protein of u 29.8 37 0.0008 23.7 1.6 17 92-108 60-76 (79)
53 PF12550 GCR1_C: Transcription 29.2 1.3E+02 0.0029 21.0 4.5 62 41-102 9-79 (81)
54 PF09295 ChAPs: ChAPs (Chs5p-A 29.0 4.8E+02 0.01 24.3 11.6 101 36-146 164-266 (395)
55 PF00627 UBA: UBA/TS-N domain; 28.5 98 0.0021 18.1 3.2 17 84-100 19-37 (37)
56 KOG2437 Muskelin [Signal trans 27.7 3.1E+02 0.0067 26.8 7.7 82 23-109 147-229 (723)
57 PF07575 Nucleopor_Nup85: Nup8 27.5 1.6E+02 0.0035 28.5 6.2 68 19-102 383-450 (566)
58 PF09862 DUF2089: Protein of u 27.3 2.1E+02 0.0045 21.8 5.5 24 44-70 39-62 (113)
59 KOG0412 Golgi transport comple 27.0 6E+02 0.013 25.8 9.8 108 32-146 413-530 (773)
60 COG5096 Vesicle coat complex, 25.9 4.1E+02 0.0089 27.1 8.7 92 67-164 25-119 (757)
61 PF13424 TPR_12: Tetratricopep 25.4 2.1E+02 0.0045 18.9 5.3 56 88-143 16-73 (78)
62 TIGR01470 cysG_Nterm siroheme 23.9 2.2E+02 0.0047 23.7 5.6 64 79-143 135-204 (205)
63 COG5262 HTA1 Histone H2A [Chro 23.5 1E+02 0.0022 23.7 3.1 44 8-55 64-107 (132)
64 PRK07111 anaerobic ribonucleos 23.5 2.7E+02 0.0059 28.2 7.1 28 37-64 58-85 (735)
65 PRK11788 tetratricopeptide rep 22.6 5.4E+02 0.012 22.7 11.0 16 87-102 151-166 (389)
66 TIGR00756 PPR pentatricopeptid 22.5 1.2E+02 0.0027 16.1 2.8 20 84-103 7-26 (35)
67 PF12569 NARP1: NMDA receptor- 21.4 7.5E+02 0.016 23.9 12.3 91 43-141 196-287 (517)
68 PF07208 DUF1414: Protein of u 21.1 1.4E+02 0.003 18.8 2.8 19 179-197 25-43 (44)
69 smart00299 CLH Clathrin heavy 20.7 1.9E+02 0.004 21.9 4.3 10 132-141 112-121 (140)
70 PF13812 PPR_3: Pentatricopept 20.5 1.4E+02 0.0031 16.0 2.8 20 84-103 8-27 (34)
No 1
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-42 Score=285.64 Aligned_cols=219 Identities=58% Similarity=0.895 Sum_probs=211.8
Q ss_pred cCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHHHH
Q 026151 22 KVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIEKV 100 (242)
Q Consensus 22 ~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~-~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i 100 (242)
+.++.+.|.+.+.++.+.+.++|+||++||+++||.++|..|.+|+|+.+ ..|.+.+..|.+|+.+|..|+++.|++.+
T Consensus 8 ~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~i 87 (228)
T KOG2659|consen 8 SFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKV 87 (228)
T ss_pred ccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999987 88999999999999999999999999999
Q ss_pred HhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccccccCh
Q 026151 101 NDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVGDLLDI 180 (242)
Q Consensus 101 ~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~~l~~~ 180 (242)
+.+.|.++..+..|.|.|++|+||||||.|...+||+|+|++++|++..+++...+++++|++|+|+++..+|++.++..
T Consensus 88 n~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~ 167 (228)
T KOG2659|consen 88 NQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELLSQ 167 (228)
T ss_pred HHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHhhh-hcCCCCccCCCCcccCCC
Q 026151 181 SQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQLDE-KAAYPRINDLATATLEDP 240 (242)
Q Consensus 181 ~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L~~-~~~~p~~~~~~~~~~~~~ 240 (242)
++|.++|..||++|+++++....+.|..+++...|++..+.. +..+|++.++.+|.++.|
T Consensus 168 s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 228 (228)
T KOG2659|consen 168 SLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDREKFSEPHFKDLTKIKSEEP 228 (228)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHhhccccccCCccccccCCC
Confidence 999999999999999999998899999999999999999866 678999999999999876
No 2
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=99.97 E-value=4.9e-30 Score=204.60 Aligned_cols=140 Identities=38% Similarity=0.586 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHH
Q 026151 78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEEL 157 (242)
Q Consensus 78 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l 157 (242)
+.+|+.|+++|++||+++|++||++++|.+++.++.+.|.|++|+|||||+++++.+||+|+|++++|+.. ...+++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~---~~~~~l 78 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFND---EFLEEL 78 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHH---HHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999976654 457899
Q ss_pred HHHhhhhhccCCCC---CccccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026151 158 ERTVALLAFEDVSN---CPVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL 220 (242)
Q Consensus 158 ~~~~~LL~~~~~~~---sp~~~l~~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L 220 (242)
+++|++|+|+++.+ +||++++++.+|+.|++.||++++..+|.+..|+|+.+++++.++.+.|
T Consensus 79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l 144 (145)
T PF10607_consen 79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL 144 (145)
T ss_pred HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999999987 7999999999999999999999999999999999999999999998764
No 3
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.96 E-value=1e-28 Score=217.42 Aligned_cols=178 Identities=22% Similarity=0.322 Sum_probs=169.5
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhh
Q 026151 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118 (242)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L 118 (242)
++..++++|++||.|+||++||..|.++++++..+|.+.+...+.|+++|++|++.+|+.||++|...|.+.++.++|.+
T Consensus 114 ~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~l 193 (389)
T KOG0396|consen 114 PRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhcc-CCCCCccccccChhhHHHHHHHHHHHHHhh
Q 026151 119 QQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE-DVSNCPVGDLLDISQRLKTASEVNAAILTS 197 (242)
Q Consensus 119 ~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~-~~~~sp~~~l~~~~~r~~la~~vn~~il~~ 197 (242)
+.|+|||||+.+++.+||.|+|++++|++..+ +.+++.+||+++|+ .++.++|..+++..||..+++.|-+..++.
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~---~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l 270 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSH---KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKL 270 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhh---HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999999998644 78999999999999 456678999999999999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH
Q 026151 198 QSHEKDPKLPSLLKMLLWAQNQ 219 (242)
Q Consensus 198 ~g~~~~s~Le~l~k~~~~~q~~ 219 (242)
+|.+..|+|-..+.....+++.
T Consensus 271 ~~i~~~~~L~~~l~~GLsalKT 292 (389)
T KOG0396|consen 271 FGIPINPALTIYLQAGLSALKT 292 (389)
T ss_pred hCCCCCcHHHHHHHhhhhhccc
Confidence 9999999999999988888776
No 4
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.4e-22 Score=180.67 Aligned_cols=201 Identities=19% Similarity=0.287 Sum_probs=172.3
Q ss_pred hccCCCCHHHH-HHHHHHHHHHhCHHHHHHHHHHHhCCCCC--CCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhh
Q 026151 33 LNDVKIRKEDM-NKLVMNFLVTEGYVDAAEKFRMESGTEPD--IDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILD 109 (242)
Q Consensus 33 l~~~~~~~~~l-~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~--~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~ 109 (242)
..++..++..+ |.+|..|++++|..|+|..|++|+|.... .....|.+.++|..+|.+||+.+|++|+..++..|.+
T Consensus 108 ~~~v~~~~~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~ 187 (394)
T KOG2817|consen 108 RNSVDFDTSQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE 187 (394)
T ss_pred hcCcChhHHHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc
Confidence 34566666555 99999999999999999999999999754 4567889999999999999999999999999999999
Q ss_pred cCcchhhhhHHHHHHHHHhcCChH--HHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccC--CCCCccccccChhhHHH
Q 026151 110 TNPQLFFHLQQQRLIELIRNGKVE--EALEFAQEELAPRGEENQSFLEELERTVALLAFED--VSNCPVGDLLDISQRLK 185 (242)
Q Consensus 110 ~~~~L~F~L~~q~fIEli~~~~~~--~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~--~~~sp~~~l~~~~~r~~ 185 (242)
.++.|+|.|+.++|+++++.|... +||.|+|++++||+.++ .++++++|++|.|-. -+++||.+++++..|..
T Consensus 188 ~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~---~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~ 264 (394)
T KOG2817|consen 188 KSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADH---LREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKE 264 (394)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch---HHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHH
Confidence 999999999999999999988655 99999999999998766 689999999999874 36899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCCcHHHHHHHHHHH-----------HH---HhhhhcCCCCccCCCCcc
Q 026151 186 TASEVNAAILTSQSHEKDPKLPSLLKMLLWA-----------QN---QLDEKAAYPRINDLATAT 236 (242)
Q Consensus 186 la~~vn~~il~~~g~~~~s~Le~l~k~~~~~-----------q~---~L~~~~~~p~~~~~~~~~ 236 (242)
+...|-+..+...|.+.+|+|..++.....+ .. .+..++..|--++|+.+.
T Consensus 265 ~~~~f~r~ycallg~s~eSPL~v~v~aG~~Alp~Llk~~~v~~~~~~~W~~~deLPveIeL~~~~ 329 (394)
T KOG2817|consen 265 LTEEFTREYCALLGISVESPLSVLVNAGCIALPQLLKYKSVMELKHGEWNTKDELPVEIELGKEY 329 (394)
T ss_pred HHHHHHHHHHHHcCCCccCcHHHHHHhhHHHHHHHHHHHHHHHHhccCccccccCccceeccccc
Confidence 9999999999999999999887766553322 21 133345778777777765
No 5
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.70 E-value=1.4e-16 Score=118.72 Aligned_cols=93 Identities=46% Similarity=0.568 Sum_probs=87.5
Q ss_pred ChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCC-CCCccccccChhhHHHHHHHHHHHHHhhC-CCCCCCcHHH
Q 026151 131 KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV-SNCPVGDLLDISQRLKTASEVNAAILTSQ-SHEKDPKLPS 208 (242)
Q Consensus 131 ~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~-~~sp~~~l~~~~~r~~la~~vn~~il~~~-g~~~~s~Le~ 208 (242)
++.+||+|||++++|+...++...++++++|++|+|+++ +.+||++++++++|..|++.||++++..+ |.+.+|+|+.
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~ 81 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI 81 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence 578999999999999998887778899999999999998 89999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHhhhh
Q 026151 209 LLKMLLWAQNQLDEK 223 (242)
Q Consensus 209 l~k~~~~~q~~L~~~ 223 (242)
++++..|+++.+...
T Consensus 82 ~~~~~~~~~~~l~~~ 96 (99)
T smart00757 82 LLSAGLAALKTLLEK 96 (99)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988653
No 6
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.34 E-value=1.9e-12 Score=87.06 Aligned_cols=55 Identities=31% Similarity=0.669 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCCh
Q 026151 78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKV 132 (242)
Q Consensus 78 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~ 132 (242)
+..+..|+++|+.|+|++|++|++.++|.+.+.++.+.|.|++|+|+|+++.++.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999999999999999999999999999999998764
No 7
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.17 E-value=3.3e-10 Score=102.12 Aligned_cols=170 Identities=15% Similarity=0.160 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhH
Q 026151 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ 119 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~ 119 (242)
+.++.+++.+.|+..||.+++..++.|+|+..... .-+.+.+.+++|+|+.++.-+....-+..+......|.+.
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~ta-----t~klf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv~ 91 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTA-----TTKLFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLVN 91 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccc-----hHHHHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHHH
Confidence 67789999999999999999999999999874332 2456889999999999998887763233445578999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCC-ccc-cccChhhHHHHHHHHHHHHHhh
Q 026151 120 QQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVG-DLLDISQRLKTASEVNAAILTS 197 (242)
Q Consensus 120 ~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~s-p~~-~l~~~~~r~~la~~vn~~il~~ 197 (242)
+|.|+|+++.|++..|+...|+.+.+.... .+.+.++.+.|++++...+ ... .-.....|.+|.+++.+.|...
T Consensus 92 kQ~fLEf~k~~~is~al~~l~~~~~~lr~~----~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~ 167 (519)
T KOG0293|consen 92 KQIFLEFLKTGSISHALPVLRNPVLYLRKN----KKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPN 167 (519)
T ss_pred HHHHHHHHhhccHhhhhHhhhcchhhhhhh----HHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHh
Confidence 999999999999999999999877776543 4677777778887743221 111 1112345889999998888655
Q ss_pred CCCCCCCcHHHHHHHHHHHHHH
Q 026151 198 QSHEKDPKLPSLLKMLLWAQNQ 219 (242)
Q Consensus 198 ~g~~~~s~Le~l~k~~~~~q~~ 219 (242)
.- .|+.+||.|+++++..|..
T Consensus 168 il-lP~rRLehLl~qAv~~Q~d 188 (519)
T KOG0293|consen 168 IL-LPKRRLEHLLEQAVKYQRD 188 (519)
T ss_pred hc-CChHHHHHHHHHHHHHHHh
Confidence 43 4688999999999988754
No 8
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=98.40 E-value=4.9e-07 Score=51.43 Aligned_cols=27 Identities=37% Similarity=0.811 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMES 67 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~ 67 (242)
++||.+|.+||.++||.+||.+|.+|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 469999999999999999999999985
No 9
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=98.16 E-value=4.4e-06 Score=49.31 Aligned_cols=32 Identities=31% Similarity=0.754 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
.+.+++++|++||.++||.+||.+|.+|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999874
No 10
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.14 E-value=4e-07 Score=85.50 Aligned_cols=181 Identities=24% Similarity=0.191 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCC----CHHhH--------HHHHHHHHHHhcCCHHHHHHHHHhhChhh
Q 026151 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDI----DLATI--------TDRMAVKKAVQCGNVEDAIEKVNDLNPEI 107 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~----~~~~~--------~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l 107 (242)
.......+..|+++.|+.+++..|+..+...... ....+ ..+...+..+-.|.+..+.+.+.+..+..
T Consensus 249 ~~l~t~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ 328 (469)
T KOG1477|consen 249 FNLSTVPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTY 328 (469)
T ss_pred ccccCCCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccc
Confidence 3344468899999999999999999876542100 00000 01222333333334444444444443333
Q ss_pred hh-------cCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhccccc--CCHHHHHHHHHHhhhhhccCCCCCcccccc
Q 026151 108 LD-------TNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGE--ENQSFLEELERTVALLAFEDVSNCPVGDLL 178 (242)
Q Consensus 108 ~~-------~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~--~~~~~~~~l~~~~~LL~~~~~~~sp~~~l~ 178 (242)
.. ..+...+.+.|+.++.+.+.+.+...+++.+.++++... .+......++.+++|++|.+|..+|....+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~s~~g~~~ 408 (469)
T KOG1477|consen 329 RKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEESPVGYLL 408 (469)
T ss_pred cccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCcccCcccccc
Confidence 33 347789999999999999999999999999999888765 333446789999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHh
Q 026151 179 DISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQNQL 220 (242)
Q Consensus 179 ~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q~~L 220 (242)
++..|+-+++.+|.+++...+.++++.|+.++.+...+-..+
T Consensus 409 ~~~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~ 450 (469)
T KOG1477|consen 409 DPIQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLY 450 (469)
T ss_pred CcccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhh
Confidence 999999999999999999999999999999999988776554
No 11
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.00014 Score=64.65 Aligned_cols=164 Identities=19% Similarity=0.236 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhh
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFF 116 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F 116 (242)
.+...++.++|.+||-.+.+-.|..+|.+|+++... .......+.+.|-+|+||..+.-++...- ...-.-
T Consensus 4 eiessdVIrli~QflKE~~L~rtl~tLQeEt~VSLN----TVDSvd~Fv~dI~sG~WD~VL~~vqsLKL-----P~kkL~ 74 (508)
T KOG0275|consen 4 EIESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLN----TVDSVDGFVNDINSGHWDTVLKTVQSLKL-----PDKKLI 74 (508)
T ss_pred eeecchHHHHHHHHHhhhhHHHHHHHHHHhhcccee----echhHHHHHHhcccCchHHHHHHHHhccC-----chhHHH
Confidence 344567999999999999999999999999987642 11123457889999999999999887542 223356
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhccccc---CCHHHHHHHHHHhhhhh--ccCCCCCccccccChhhHHHHHHHHH
Q 026151 117 HLQQQRLIELIRNGKVEEALEFAQEELAPRGE---ENQSFLEELERTVALLA--FEDVSNCPVGDLLDISQRLKTASEVN 191 (242)
Q Consensus 117 ~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~---~~~~~~~~l~~~~~LL~--~~~~~~sp~~~l~~~~~r~~la~~vn 191 (242)
.|+.|-.+|||.-.....|-..+|+. .|+.. ..|+..-.++ .||. |-||... |.+--...+|..+|+.+.
T Consensus 75 dLYEqivlEliELREL~tAR~~lRQT-dpM~~lKQ~~peRy~~lE---~ll~R~YFDp~Ea-Y~dssKEkrRa~IAQ~ls 149 (508)
T KOG0275|consen 75 DLYEQIVLELIELRELGTARSLLRQT-DPMIMLKQIQPERYIRLE---NLLNRSYFDPREA-YGDSSKEKRRAVIAQALS 149 (508)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcc-CceehhhccChHHHHHHH---HHhcccccChhhh-cCcchHHHHHHHHHHHhc
Confidence 78999999999988888888888753 33322 2333333444 4554 5566433 555333466677776665
Q ss_pred HHHHhhCCCCCCCcHHHHHHHHHHHHH
Q 026151 192 AAILTSQSHEKDPKLPSLLKMLLWAQN 218 (242)
Q Consensus 192 ~~il~~~g~~~~s~Le~l~k~~~~~q~ 218 (242)
..+ ...+.|+|..|+-|+...|.
T Consensus 150 ~EV----~VVppSRLlaLlGQaLKWQq 172 (508)
T KOG0275|consen 150 GEV----HVVPPSRLLALLGQALKWQQ 172 (508)
T ss_pred Cce----EEcChHHHHHHHHHHhhhHh
Confidence 433 44567889998888776654
No 12
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.35 E-value=0.0077 Score=53.35 Aligned_cols=191 Identities=11% Similarity=0.039 Sum_probs=130.3
Q ss_pred cccCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC-CCCHHhHHHHHHHHHHHhcCCHHHHHH
Q 026151 20 SKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP-DIDLATITDRMAVKKAVQCGNVEDAIE 98 (242)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~-~~~~~~~~~r~~I~~~I~~G~~~~Ai~ 98 (242)
++.+++.... +.+-..+.....++.+...++.+.|-..-+..|+.+.|+.+ ....+.|...+.|.+.|.+.+...-++
T Consensus 81 ~~~nFd~~~~-n~~~~f~~~~v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE 159 (396)
T COG5109 81 RPANFDVQVG-NQIYPFSTQTVTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIE 159 (396)
T ss_pred ccccCCHHHH-hhcCCCccceeeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHH
Confidence 4444555444 22333344555566666677777777888888999999875 345688899999999999999999999
Q ss_pred HHHhhChhhhhcCcchhhhhHHH--HHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCC------C
Q 026151 99 KVNDLNPEILDTNPQLFFHLQQQ--RLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDV------S 170 (242)
Q Consensus 99 ~i~~~~p~l~~~~~~L~F~L~~q--~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~------~ 170 (242)
|.+ ....+.+.++...+.+... .++-++.+ ++++|+.++++.++.+...| ...++..+-.+.+... +
T Consensus 160 ~~Q-i~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh---~~dv~~~~~~l~nap~dcfrhre 234 (396)
T COG5109 160 FLQ-IEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFVPKH---IQDVKPLLRFLVNAPTDCFRHRE 234 (396)
T ss_pred HHH-hcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh---ccchHHHHHHHHcCchHHhhhcc
Confidence 993 3444555555555555544 44445544 79999999999988886443 4455555555544211 0
Q ss_pred ----------------CCccccccC--hhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHH
Q 026151 171 ----------------NCPVGDLLD--ISQRLKTASEVNAAILTSQSHEKDPKLPSLLKMLLWAQ 217 (242)
Q Consensus 171 ----------------~sp~~~l~~--~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~~~~~q 217 (242)
+-|. +.+| ...|..+...|.+.+++..|++-+|+|..++.....+-
T Consensus 235 kelmqnI~~~l~ksligqPi-EdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf 298 (396)
T COG5109 235 KELMQNIQEALKKSLIGQPI-EDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAF 298 (396)
T ss_pred hhHHHHHHHHHHHhhcCCcH-HHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHH
Confidence 0010 0111 25689999999999999999999999999887755443
No 13
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.22 Score=41.68 Aligned_cols=142 Identities=13% Similarity=0.153 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc----C----c
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT----N----P 112 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~----~----~ 112 (242)
...+.+|-+||.-.|+.-|.++|-.|.........-.=....++.+++-..|++.--+.=.....+++.. . .
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~ 85 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH 85 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4578999999999999999999988876543211111123445667777788877655444433343332 1 3
Q ss_pred chhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhcc---CC-CCCccccccChhhHHHHHH
Q 026151 113 QLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFE---DV-SNCPVGDLLDISQRLKTAS 188 (242)
Q Consensus 113 ~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~---~~-~~sp~~~l~~~~~r~~la~ 188 (242)
.++--+.+...+-.|.++..++|-+|.++.-+.... + .+-++ ..+|+ .. ...|++.+++...-+-..-
T Consensus 86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lqn-q----~eWkD---WF~fPf~~~a~~tppf~~~F~ktw~e~~~~ 157 (241)
T KOG1333|consen 86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQN-Q----AEWKD---WFVLPFLPSAKDTPPFRKYFDKTWIEIYYV 157 (241)
T ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHhc-c----hhhhh---heecccCCCCCCCccHHHHHHhhhhHhhhh
Confidence 456667777788888899999999999976544432 2 23343 33333 22 2356888877754444333
Q ss_pred HH
Q 026151 189 EV 190 (242)
Q Consensus 189 ~v 190 (242)
.+
T Consensus 158 sl 159 (241)
T KOG1333|consen 158 SL 159 (241)
T ss_pred hH
Confidence 33
No 14
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=89.61 E-value=0.79 Score=32.89 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
..++.||.+||..+||.=|+..|..|+|...
T Consensus 19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~ 49 (81)
T PF09398_consen 19 RLINELIREYLEFNNLDYTLSVFQPESGQPE 49 (81)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhhccCCCC
Confidence 4579999999999999999999999999864
No 15
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=75.49 E-value=19 Score=23.52 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 026151 87 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPR 146 (242)
Q Consensus 87 ~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~ 146 (242)
++..|++++|++.+++... ....+..+.+. --.=+++.|+..+|..+..+-+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~-~~p~~~~~~~~----la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQ-RNPDNPEARLL----LAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHH-HTTTSHHHHHH----HHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHH-HCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4678999999999986531 11122223332 2223567899999999988654443
No 16
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=75.31 E-value=9.4 Score=30.07 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=36.9
Q ss_pred cchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhh
Q 026151 112 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (242)
Q Consensus 112 ~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~ 162 (242)
..+.|=+.++-|++||.+|...+|..|..++-..+...+ ..+++++.+
T Consensus 38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~---~~~i~~L~~ 85 (142)
T PF04494_consen 38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSH---QEDIEKLSS 85 (142)
T ss_dssp GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHG---HHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHH---HHHHHHHHh
Confidence 458999999999999999999999999998776665443 345665443
No 17
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=74.24 E-value=1.5 Score=34.28 Aligned_cols=49 Identities=20% Similarity=0.384 Sum_probs=36.8
Q ss_pred cchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhh
Q 026151 112 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVAL 163 (242)
Q Consensus 112 ~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~L 163 (242)
..+.|=+...-|++||.+|...+|.+|.+++-.-+.. ...+.++.+.++
T Consensus 27 ~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~---~~~~~i~~L~~i 75 (133)
T cd08044 27 SQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFED---SHSEDIKKLSSI 75 (133)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHH---HHHHHHHHHHcc
Confidence 4588999999999999999999999999976555432 234566654443
No 18
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=71.74 E-value=5.4 Score=27.20 Aligned_cols=36 Identities=11% Similarity=0.350 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026151 36 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 36 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
+...+.++-..|.+|...+||.-|...+++..|+..
T Consensus 4 LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S 39 (65)
T PF01726_consen 4 LTERQKEVLEFIREYIEENGYPPTVREIAEALGLKS 39 (65)
T ss_dssp --HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSSS
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCC
Confidence 344567888999999999999999999999999863
No 19
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=62.59 E-value=64 Score=26.31 Aligned_cols=84 Identities=20% Similarity=0.332 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhH-
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQ- 119 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~- 119 (242)
..+..++.+=|++.|-+.....|..-.=+.+.... -...+.-|. .+|...+..-++...|.
T Consensus 29 ~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~l--------A~~LLs~~~----------~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPL--------ACQLLSLGN----------QYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHH--------HHHHHHhHc----------cChHHHHHHHHHHHHhhh
Confidence 34777777778888777777777654433332111 011121221 23333333334444444
Q ss_pred HH-HHHH-HHhcCChHHHHHHHHHh
Q 026151 120 QQ-RLIE-LIRNGKVEEALEFAQEE 142 (242)
Q Consensus 120 ~q-~fIE-li~~~~~~~Al~~~r~~ 142 (242)
.. ..+| |+..|++.+|+.|+|+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 33 4456 77899999999999974
No 20
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.27 E-value=45 Score=31.49 Aligned_cols=76 Identities=28% Similarity=0.333 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHH
Q 026151 43 MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR 122 (242)
Q Consensus 43 l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~ 122 (242)
.-.-|+.||...||.+.|-.|+++. ++++.-+|.-|+++.|.+.+.+... -..++|=
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~~----------~~~W~~L 353 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELDD----------PEKWKQL 353 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCST----------HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcCc----------HHHHHHH
Confidence 4677889999999999999986432 5678889999999999999876431 1255666
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 026151 123 LIELIRNGKVEEALEFAQE 141 (242)
Q Consensus 123 fIEli~~~~~~~Al~~~r~ 141 (242)
--+.++.|++.-|-++.++
T Consensus 354 g~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 354 GDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHHHTTBHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 6667888998888877764
No 21
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=62.04 E-value=74 Score=33.29 Aligned_cols=179 Identities=13% Similarity=0.113 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhh----hc-C
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEIL----DT-N 111 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~----~~-~ 111 (242)
.++|+.++++-.+|.....-.-.=+.+.+..=..|..+.+..--..+...-+.....+-|-+.++..+-... +. .
T Consensus 437 ~vsrdliD~~a~ef~~nlNtKa~RkrLvKal~~vprt~ldllPyYsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q 516 (1128)
T KOG2051|consen 437 CVSRDLIDQAAIEFCSNLNTKANRKRLVKALFVVPRTRLDLLPYYSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQ 516 (1128)
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHhhhcccchhhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 457777888877777754333334455554433344444444334445555555556666666555443322 11 1
Q ss_pred cchhhhhHHHHHHH-HHhcC--ChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCC-ccccccChhhHHHHH
Q 026151 112 PQLFFHLQQQRLIE-LIRNG--KVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNC-PVGDLLDISQRLKTA 187 (242)
Q Consensus 112 ~~L~F~L~~q~fIE-li~~~--~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~s-p~~~l~~~~~r~~la 187 (242)
..+.-.+.+-.||- |++=+ ...+++.+.+.-+..|..-+-+...-+-+.+|...|..|+.. ....+++.-.|.+.+
T Consensus 517 ~~ietk~~~VrfIsEL~KF~lv~~~~if~cLk~ll~dF~~hnIEm~c~lLE~~GrfLlr~pEt~lrM~~~Le~i~rkK~a 596 (1128)
T KOG2051|consen 517 INIETKLKIVRFISELCKFQLVPKFEIFSCLKMLLNDFTHHNIEMACVLLESCGRFLLRSPETKLRMRVFLEQIKRKKRA 596 (1128)
T ss_pred hhhhhhhhhhhhHHhhhhhCccChHHHHHHHHHHHHhcccccHHHHHHHHHhcchhhhcChhHHHHHHHHHHHHHHHHHH
Confidence 34566666677774 65544 456778888887777765455555667777888888877654 245566777776666
Q ss_pred HHHHH---HHH-hhC--CCCC---------CCcHHHHHHHHHH
Q 026151 188 SEVNA---AIL-TSQ--SHEK---------DPKLPSLLKMLLW 215 (242)
Q Consensus 188 ~~vn~---~il-~~~--g~~~---------~s~Le~l~k~~~~ 215 (242)
..++. ++. ..+ .+|| .|++...+|.+..
T Consensus 597 ~~lDsr~~~~iENay~~~~PPe~~~~~~k~r~p~~efiR~Li~ 639 (1128)
T KOG2051|consen 597 SALDSRQATLIENAYYLCNPPERSKRLSKKRPPMQEFIRYLIR 639 (1128)
T ss_pred hhhchHHHHHHHHhHHhccChhhcccccccCCcHHHHHHHHHH
Confidence 66655 221 111 2233 2678888888663
No 22
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=59.56 E-value=30 Score=26.72 Aligned_cols=58 Identities=16% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHHHHhCHHHHHHHHHHHhC--C-CCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026151 46 LVMNFLVTEGYVDAAEKFRMESG--T-EPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (242)
Q Consensus 46 LI~~yL~~~Gy~~ta~~f~~E~~--i-~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~ 104 (242)
-|.+.+ .+|-.+.|-..+.+.. + ....+....-.++++.+.|.+|++.+|+++++++.
T Consensus 7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345555 7787777777776543 1 12345556677889999999999999999999865
No 23
>PF06588 Muskelin_N: Muskelin N-terminus; InterPro: IPR010565 This entry represents the N-terminal region of muskelin and is found in conjunction with several IPR006652 from INTERPRO repeats. Muskelin is an intracellular, kelch repeat protein that is needed in cell-spreading responses to the matrix adhesion molecule, thrombospondin-1 [].
Probab=58.89 E-value=16 Score=30.58 Aligned_cols=31 Identities=23% Similarity=0.506 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
.+..|+++.||-.+||.++.+++.+.+++..
T Consensus 166 ~eaiRlcLKHlRq~~y~~aFesLqk~t~v~L 196 (199)
T PF06588_consen 166 KEAIRLCLKHLRQRGYLEAFESLQKQTGVQL 196 (199)
T ss_pred HHHHHHHHHHhhhcCchhHHHHHHHHcCCCC
Confidence 4567999999999999999999999999864
No 24
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.49 E-value=58 Score=28.71 Aligned_cols=75 Identities=13% Similarity=0.134 Sum_probs=62.0
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 026151 28 EWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (242)
Q Consensus 28 ~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~ 102 (242)
.|-++.++.+..-......|+=||..+.|..+-+.+..-+.++.....+......++...--+||++++-+.++.
T Consensus 178 ~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 178 VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLSS 252 (308)
T ss_pred hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHcC
Confidence 366666666666677888999999999999999999998998876667777777888888899999999888864
No 25
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=55.91 E-value=14 Score=32.82 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHh
Q 026151 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMES 67 (242)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~ 67 (242)
-|+.|...|-+||+|-|-.++|++|..|.
T Consensus 16 ArekLa~YvYEYLlhvgaqksaqtflsei 44 (354)
T KOG4594|consen 16 AREKLALYVYEYLLHVGAQKSAQTFLSEI 44 (354)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence 37889999999999999999999998775
No 26
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.64 E-value=1.6e+02 Score=26.33 Aligned_cols=102 Identities=22% Similarity=0.206 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhC--------CC--------CCCCH-------------------------
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESG--------TE--------PDIDL------------------------- 75 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~--------i~--------~~~~~------------------------- 75 (242)
..---++++++.+.|.+.||.+.+.++..+.. +. |..+.
T Consensus 129 ~pfWLDgq~~~~qal~~lG~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~ 208 (301)
T TIGR03362 129 APFWLDGQRLSAQALERLGYAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVG 208 (301)
T ss_pred CchhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCc
Confidence 33456688999999999999999999888853 11 11110
Q ss_pred ---HhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHH
Q 026151 76 ---ATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 140 (242)
Q Consensus 76 ---~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r 140 (242)
+........+.++.+|.+++|+.|++...+...+....+...|..-+..+ ..|...-|+...+
T Consensus 209 ~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~--~~g~~~lA~~ll~ 274 (301)
T TIGR03362 209 EESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLE--QAGKAELAQQLYA 274 (301)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHH--HcCCHHHHHHHHH
Confidence 11233456777888899999999998866655444445555555555444 3444455555444
No 27
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=54.29 E-value=3.9 Score=38.54 Aligned_cols=34 Identities=29% Similarity=0.555 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
+++++++|.||--||-..||.-||=+|..|+++.
T Consensus 2 sitsdEvN~LV~RYLqE~G~~hsaftf~~Et~is 35 (524)
T KOG0273|consen 2 SITSDEVNFLVWRYLQESGFSHSAFTFGIETGIS 35 (524)
T ss_pred cccHHHHHHHHHHHHHHcCcceeeEEeeeccccc
Confidence 4678999999999999999999999999999985
No 28
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=51.36 E-value=2.1e+02 Score=27.52 Aligned_cols=54 Identities=13% Similarity=0.267 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcC--------cchhhhhHHHHHHHHHhcCC
Q 026151 78 ITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTN--------PQLFFHLQQQRLIELIRNGK 131 (242)
Q Consensus 78 ~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~--------~~L~F~L~~q~fIEli~~~~ 131 (242)
+-.-..+-.+|..|.++++-..++...+.+++.. ..+...|-+-.|+|+.....
T Consensus 129 ~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s 190 (549)
T PF07079_consen 129 FLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMS 190 (549)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 3445567778999999999999999999998842 22445677788999877543
No 29
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=50.52 E-value=26 Score=22.35 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhhccc
Q 026151 120 QQRLIELIRNGKVEEALEFAQEELAPR 146 (242)
Q Consensus 120 ~q~fIEli~~~~~~~Al~~~r~~l~~~ 146 (242)
..++.+.|..|+..+|++++++.-.+.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l 31 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPL 31 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHH
Confidence 567888999999999999999765443
No 30
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=48.86 E-value=2e+02 Score=25.83 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHH
Q 026151 43 MNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQR 122 (242)
Q Consensus 43 l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~ 122 (242)
++.. ...|+..|....|..+.++..++. ..--.-+|+.++..|+|++-.++.... .|++-|. -
T Consensus 180 l~~T-i~~li~~~~~k~A~kl~k~Fkv~d-----krfw~lki~aLa~~~~w~eL~~fa~sk-------KsPIGye----p 242 (319)
T PF04840_consen 180 LNDT-IRKLIEMGQEKQAEKLKKEFKVPD-----KRFWWLKIKALAENKDWDELEKFAKSK-------KSPIGYE----P 242 (319)
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHHcCCcH-----HHHHHHHHHHHHhcCCHHHHHHHHhCC-------CCCCChH----H
Confidence 4444 445667788889999999998752 111356688888889999888876542 3444443 3
Q ss_pred HHH-HHhcCChHHHHHHHHH
Q 026151 123 LIE-LIRNGKVEEALEFAQE 141 (242)
Q Consensus 123 fIE-li~~~~~~~Al~~~r~ 141 (242)
|++ +++.|...+|..|..+
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh
Confidence 555 3456778888888876
No 31
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=46.80 E-value=76 Score=21.73 Aligned_cols=51 Identities=29% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHH
Q 026151 84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQ 140 (242)
Q Consensus 84 I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r 140 (242)
-.-....|+++.|+.+++. ......+....+.+ -+- +++-|+.++|++...
T Consensus 32 a~~~~~~~~y~~A~~~~~~--~~~~~~~~~~~~l~-a~~---~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 32 AQCYFQQGKYEEAIELLQK--LKLDPSNPDIHYLL-ARC---LLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHTTHHHHHHHHHHC--HTHHHCHHHHHHHH-HHH---HHHTT-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH--hCCCCCCHHHHHHH-HHH---HHHhCCHHHHHHHHh
Confidence 3445678888888888877 23322222233322 222 334577888887665
No 32
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.43 E-value=1.9e+02 Score=24.53 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=25.6
Q ss_pred hHHHHHHhccCCCCHHHHHHHHHHHHHHhCH---HHHHHHHHHHhCCCC
Q 026151 26 REEWEKKLNDVKIRKEDMNKLVMNFLVTEGY---VDAAEKFRMESGTEP 71 (242)
Q Consensus 26 ~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy---~~ta~~f~~E~~i~~ 71 (242)
.....+.+..-+++...=+.+|.=+|...+- .+.+..|....++++
T Consensus 29 L~~Ll~~i~~~~~~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~ 77 (226)
T PF13934_consen 29 LRALLDLILSSNVSLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPP 77 (226)
T ss_pred HHHHHHHHhcCCcCHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCH
Confidence 3444455555555544333444444444432 457888998888864
No 33
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=45.37 E-value=90 Score=30.25 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=30.8
Q ss_pred cchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccC
Q 026151 112 PQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEE 149 (242)
Q Consensus 112 ~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~ 149 (242)
+...+.++.++|.|+... ++..|++|.++.+.|..+.
T Consensus 621 ~~~~~~~~~HrF~E~~~~-~~l~a~~ylq~~~~~~~D~ 657 (723)
T KOG2437|consen 621 RHCKYLIRKHRFEEKAQV-DPLSALKYLQNDLYITVDH 657 (723)
T ss_pred hcchhhhHHHHHHHHhhh-hhHHHhHhhhhcceecccc
Confidence 456788999999999875 6899999999988876543
No 34
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=44.51 E-value=34 Score=23.54 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhcccc-cCCHHHHHHHH
Q 026151 117 HLQQQRLIELIRNGKVEEALEFAQEELAPRG-EENQSFLEELE 158 (242)
Q Consensus 117 ~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~-~~~~~~~~~l~ 158 (242)
.+..++|-+++..|++.+|-.++-+ +|-+ -.+++..++|+
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~--sP~giLRt~~Ti~rFk 47 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN--SPRGILRTPETINRFK 47 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH--SGGGTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh--CccchhcCHHHHHHHH
Confidence 5788999999999999999998875 3432 23555566665
No 35
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=44.31 E-value=40 Score=26.42 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=45.5
Q ss_pred HHHHhCHHHHHHHHHHHhCCC--CCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhh
Q 026151 50 FLVTEGYVDAAEKFRMESGTE--PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEI 107 (242)
Q Consensus 50 yL~~~Gy~~ta~~f~~E~~i~--~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l 107 (242)
|+.-.|=.++.+.|.+..+.- ...+.+.+...+.|-..+.+|..-+|+..+...+|.-
T Consensus 65 linp~gaeq~~~~F~~~l~~l~~~f~~~eil~~lk~Id~lV~~~~~feALkaiR~lyp~E 124 (148)
T COG5443 65 LINPAGAEQATEMFRKSLNMLLACFKDAEILAALKRIDGLVMAGRAFEALKAIRGLYPIE 124 (148)
T ss_pred hcCHhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccHHHHHHHHHhhhchhH
Confidence 444556677778888776532 2346678899999999999999999999999999864
No 36
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.96 E-value=1.7e+02 Score=25.24 Aligned_cols=69 Identities=16% Similarity=0.221 Sum_probs=51.4
Q ss_pred CHHHHH-HHHHHHHHHhCHHHHHHHHHHHhCCC---CCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhh
Q 026151 39 RKEDMN-KLVMNFLVTEGYVDAAEKFRMESGTE---PDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEI 107 (242)
Q Consensus 39 ~~~~l~-~LI~~yL~~~Gy~~ta~~f~~E~~i~---~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l 107 (242)
+...++ |+....++..|-.+.|-.+.....=+ ...+.......+++...|++|...+|++..+..-...
T Consensus 61 d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~ 133 (228)
T KOG2659|consen 61 DLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPF 133 (228)
T ss_pred chhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccc
Confidence 344454 77777889999999998888776522 2223455678889999999999999999998765433
No 37
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=41.03 E-value=45 Score=25.16 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHH
Q 026151 79 TDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE 125 (242)
Q Consensus 79 ~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIE 125 (242)
.....+.+.|.++||+.|.+.+.+....-.+....+.|.+..+++=+
T Consensus 30 ~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~ 76 (121)
T PF14276_consen 30 EQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN 76 (121)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH
Confidence 44667999999999999999998876555555666777777776643
No 38
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=39.99 E-value=1.4e+02 Score=26.84 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHh
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVND 102 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~ 102 (242)
+++....-++.+.-|...|.++-...|.++ ..++...+.| +..++..|+..+|..++..
T Consensus 204 kv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepF-----v~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 204 KVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPF-----VEACLKYGNKKEASKYIPK 262 (319)
T ss_pred CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHH-----HHHHHHCCCHHHHHHHHHh
Confidence 444444444555555555555555445443 1122333333 4444445555555555443
No 39
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=38.62 E-value=1.1e+02 Score=19.92 Aligned_cols=53 Identities=32% Similarity=0.333 Sum_probs=35.3
Q ss_pred HHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 026151 87 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (242)
Q Consensus 87 ~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 144 (242)
.+..++++.|++.++.. +..++. ...++...=.=+...|+..+|++...+-+.
T Consensus 5 ~~~~~~~~~A~~~~~~~----l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERA----LELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHH----HHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 46789999999998753 333333 333344444445567889999998887653
No 40
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=37.86 E-value=62 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
.+.+..+|+.+.+||...||..|-..+..|.++.
T Consensus 18 ~~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l~ 51 (707)
T KOG0263|consen 18 GSHTRDLNRIVLEYLRKKKYSRTEEMLRQEANLP 51 (707)
T ss_pred CcchHHHHHHHHHHHhhhcccccchhhhhhhccc
Confidence 4557889999999999999999999999998754
No 41
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=36.19 E-value=1.2e+02 Score=30.56 Aligned_cols=60 Identities=18% Similarity=0.303 Sum_probs=43.5
Q ss_pred HHHHHH-HHhcCCHHHHHHHHHhhChhhhhcC--cchhhhhHHHHHHH----HHhcCChHHHHHHHHH
Q 026151 81 RMAVKK-AVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIE----LIRNGKVEEALEFAQE 141 (242)
Q Consensus 81 r~~I~~-~I~~G~~~~Ai~~i~~~~p~l~~~~--~~L~F~L~~q~fIE----li~~~~~~~Al~~~r~ 141 (242)
.+.|.+ .|..|+|++|.+..+.+ |++...- +.-.|.--.-+|+| .++.|...+|+....+
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~h-Pe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKH-PEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhC-ccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 344555 48899999999998875 7766542 44567777778888 4667888888887764
No 42
>PF03997 VPS28: VPS28 protein; InterPro: IPR007143 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ].; PDB: 2J9W_B 2J9U_C 2G3K_A 2F66_E 2F6M_D 2J9V_A 2CAZ_E 2P22_B.
Probab=36.03 E-value=98 Score=25.77 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhhhcccCCChHHHHHHhccCCCCHHHHHHHHHHH---H--HHhCHHHHHHHHHHHhCCC
Q 026151 4 FWIVIRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNF---L--VTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~y---L--~~~Gy~~ta~~f~~E~~i~ 70 (242)
.+.+|.-|+-.|.. |-|..|+.+++ ....++|+.+| + .+.+.+...+.|.++.++.
T Consensus 4 LysII~tle~LEka-yikD~It~~eY----------t~~c~kLl~Qyk~~~~~~~~~~~~~le~F~~~y~l~ 64 (188)
T PF03997_consen 4 LYSIIKTLEHLEKA-YIKDSITEKEY----------TTACNKLLNQYKTILKQLKDDEFPDLEEFMKKYNLD 64 (188)
T ss_dssp HHHHHHHHHHHHHH-HHTTSS-HHHH----------HHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHH-HhhccCCHHHH----------HHHHHHHHHHHHHHHHHcccccCCCHHHHHHHhccc
Confidence 45678888888875 77888998887 67799999999 2 3333567789999998875
No 43
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.07 E-value=46 Score=29.86 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhh
Q 026151 80 DRMAVKKAVQCGNVEDAIEKVNDL 103 (242)
Q Consensus 80 ~r~~I~~~I~~G~~~~Ai~~i~~~ 103 (242)
-.+.|++++..||++.|+.++++-
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEA 283 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEA 283 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 367899999999999999999874
No 44
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=33.96 E-value=54 Score=17.52 Aligned_cols=17 Identities=12% Similarity=0.253 Sum_probs=12.5
Q ss_pred HHHHhcCCHHHHHHHHH
Q 026151 85 KKAVQCGNVEDAIEKVN 101 (242)
Q Consensus 85 ~~~I~~G~~~~Ai~~i~ 101 (242)
+-....|++++|..++.
T Consensus 9 ~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 9 RALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 34567888888888765
No 45
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=33.51 E-value=5.1e+02 Score=25.98 Aligned_cols=126 Identities=20% Similarity=0.273 Sum_probs=74.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHH
Q 026151 80 DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELER 159 (242)
Q Consensus 80 ~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~ 159 (242)
...+....+.+|..+.|++.+..+.+.+.. .+.|...+-.+..- -+.+++|+...+..+.+..++. .+...+..
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D---kla~~e~ka~l~~k--l~~lEeA~~~y~~Ll~rnPdn~-~Yy~~l~~ 261 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQIVD---KLAFEETKADLLMK--LGQLEEAVKVYRRLLERNPDNL-DYYEGLEK 261 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhHHHH---HHHHhhhHHHHHHH--HhhHHhHHHHHHHHHhhCchhH-HHHHHHHH
Confidence 345566667899999999999999888765 35566555555443 3478899999998777664432 22334444
Q ss_pred Hhh--------h-hhcc----CC--CCC----ccccccChhhHHHHHHHHHHHHHhhCCCCCCCcHHHHHHH
Q 026151 160 TVA--------L-LAFE----DV--SNC----PVGDLLDISQRLKTASEVNAAILTSQSHEKDPKLPSLLKM 212 (242)
Q Consensus 160 ~~~--------L-L~~~----~~--~~s----p~~~l~~~~~r~~la~~vn~~il~~~g~~~~s~Le~l~k~ 212 (242)
+++ + .+|. .+ ..+ |..-+-+.+-+..+..-++..+-.... +.-+.|+.+.+.
T Consensus 262 ~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p-~vf~dl~SLyk~ 332 (700)
T KOG1156|consen 262 ALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP-SVFKDLRSLYKD 332 (700)
T ss_pred HHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC-chhhhhHHHHhc
Confidence 443 1 1222 11 123 333344456677777777777654332 223555555554
No 46
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.14 E-value=93 Score=20.70 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhh
Q 026151 75 LATITDRMAVKKAVQCGNVEDAIEKVNDLNPEI 107 (242)
Q Consensus 75 ~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l 107 (242)
.|.....+-|...+..|++++|.+++++....+
T Consensus 21 HD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 21 HDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456677788899999999999999998765443
No 47
>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.
Probab=32.48 E-value=99 Score=22.97 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 026151 116 FHLQQQRLIELIRNGKVEEALEFAQEELAPRGE 148 (242)
Q Consensus 116 F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~ 148 (242)
|.=+..+.+||++.+.-..|+.|+++.+..+..
T Consensus 48 faPYEkr~mELlkv~kdKrAlKf~KKRlGth~R 80 (98)
T PF01158_consen 48 FAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR 80 (98)
T ss_dssp HCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred CChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence 555677889999999889999999999987754
No 48
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=32.04 E-value=64 Score=21.10 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=23.5
Q ss_pred cChhhHHHHHHHHHHHHHhhCCCCCCC
Q 026151 178 LDISQRLKTASEVNAAILTSQSHEKDP 204 (242)
Q Consensus 178 ~~~~~r~~la~~vn~~il~~~g~~~~s 204 (242)
.+.+++.+|++.+..++.+.+|.|.++
T Consensus 12 rs~EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 12 RSQEQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcce
Confidence 378999999999999999999987653
No 49
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=31.19 E-value=2.9e+02 Score=22.41 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhCHHHHH-HHHHHHhCCCCCCCHHhH-HHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc-Ccchhhhh
Q 026151 42 DMNKLVMNFLVTEGYVDAA-EKFRMESGTEPDIDLATI-TDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT-NPQLFFHL 118 (242)
Q Consensus 42 ~l~~LI~~yL~~~Gy~~ta-~~f~~E~~i~~~~~~~~~-~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~-~~~L~F~L 118 (242)
....-+++|+.+.|-.+.| +++.+-..-.. .....+ -...-|+-+|.-|||..+...+++...-+... +......|
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3445678999999976555 55554322111 111112 23667888999999999999998876555442 24567789
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhhccc
Q 026151 119 QQQRLIELIRNGKVEEALEFAQEELAPR 146 (242)
Q Consensus 119 ~~q~fIEli~~~~~~~Al~~~r~~l~~~ 146 (242)
.+.+-+..+..++..+|-+..-.-...+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999999988866555444444
No 50
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=30.53 E-value=92 Score=23.13 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=27.3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhccccc
Q 026151 116 FHLQQQRLIELIRNGKVEEALEFAQEELAPRGE 148 (242)
Q Consensus 116 F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~ 148 (242)
|.=+....+|||+.+.-..|+.|+++.+..+..
T Consensus 48 faPYErr~mELLkv~kdKrAlKfaKkRlGth~R 80 (98)
T PTZ00196 48 FSPYERRMIELLKVGKDKRALKYAKKRLGTHKR 80 (98)
T ss_pred ccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHH
Confidence 444667889999998889999999999987754
No 51
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=29.96 E-value=94 Score=22.17 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhh
Q 026151 77 TITDRMAVKKAVQCGNVEDAIEKVNDL 103 (242)
Q Consensus 77 ~~~~r~~I~~~I~~G~~~~Ai~~i~~~ 103 (242)
....-..|.++|.+||.+.|.+.+..+
T Consensus 96 ~~~~h~~i~~ai~~~d~~~a~~~~~~h 122 (125)
T PF07729_consen 96 SLEEHREIIDAIRAGDPEAAREALRQH 122 (125)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345566677777777777777766654
No 52
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=29.78 E-value=37 Score=23.65 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.4
Q ss_pred CHHHHHHHHHhhChhhh
Q 026151 92 NVEDAIEKVNDLNPEIL 108 (242)
Q Consensus 92 ~~~~Ai~~i~~~~p~l~ 108 (242)
-+|.|++|+.+|.|.+-
T Consensus 60 tld~Ai~Wi~e~M~~iT 76 (79)
T PF10827_consen 60 TLDLAIAWIGEHMPHIT 76 (79)
T ss_pred cHHHHHHHHHhcccchh
Confidence 57999999999988753
No 53
>PF12550 GCR1_C: Transcriptional activator of glycolytic enzymes; InterPro: IPR022210 This domain family is found in eukaryotes, and is approximately 80 amino acids in length. This family is activates the transcription of glycolytic enzymes.
Probab=29.15 E-value=1.3e+02 Score=21.02 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC---CCCCHHhHHHHHHHHHHHhc-----C-CHHHHHHHHHh
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE---PDIDLATITDRMAVKKAVQC-----G-NVEDAIEKVND 102 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~---~~~~~~~~~~r~~I~~~I~~-----G-~~~~Ai~~i~~ 102 (242)
..+..+..+|..-.+-..+...|.+..|-. ...+...+..|+.|.+.|.. | ..++|++.|+.
T Consensus 9 ~TV~dlw~Ew~~g~~g~psI~~le~~yG~~WR~~~~~~~~y~rRK~Ii~~I~~l~~~~g~~~~~ai~~le~ 79 (81)
T PF12550_consen 9 KTVYDLWREWFTGLNGQPSIRSLEKKYGSKWRRDSKERRTYSRRKVIIDFIERLANERGISEEEAIEILEE 79 (81)
T ss_pred CcHHHHHHHHhcCCCCCCCHHHHHHHhChhhccCcccchhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 447778888877655667888888888854 23445688999999998876 3 67777777764
No 54
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=28.96 E-value=4.8e+02 Score=24.30 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchh
Q 026151 36 VKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLF 115 (242)
Q Consensus 36 ~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~ 115 (242)
.+.-.+-|..-++.|+...|-.+.|..+.++..-.... ... .-.+-.+..++-.+|++.+++.- ... +-.
T Consensus 164 ~t~~~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-v~~----~LA~v~l~~~~E~~AI~ll~~aL---~~~--p~d 233 (395)
T PF09295_consen 164 PTIVNNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE-VAV----LLARVYLLMNEEVEAIRLLNEAL---KEN--PQD 233 (395)
T ss_pred CCCcchHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-HHH----HHHHHHHhcCcHHHHHHHHHHHH---HhC--CCC
Confidence 45566788888899999988888887777776543321 111 12444566788889999988643 222 222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHh--hccc
Q 026151 116 FHLQQQRLIELIRNGKVEEALEFAQEE--LAPR 146 (242)
Q Consensus 116 F~L~~q~fIEli~~~~~~~Al~~~r~~--l~~~ 146 (242)
..|...+---++.+++.+.|++.+++- +.|.
T Consensus 234 ~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~ 266 (395)
T PF09295_consen 234 SELLNLQAEFLLSKKKYELALEIAKKAVELSPS 266 (395)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 666666666678888999999999874 4454
No 55
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=28.47 E-value=98 Score=18.08 Aligned_cols=17 Identities=35% Similarity=0.618 Sum_probs=11.8
Q ss_pred HHHHHh--cCCHHHHHHHH
Q 026151 84 VKKAVQ--CGNVEDAIEKV 100 (242)
Q Consensus 84 I~~~I~--~G~~~~Ai~~i 100 (242)
.+.++. .||++.|+.|+
T Consensus 19 ~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 19 AREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHhC
Confidence 444443 57999999885
No 56
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=27.72 E-value=3.1e+02 Score=26.79 Aligned_cols=82 Identities=10% Similarity=0.075 Sum_probs=51.1
Q ss_pred CCChHHHHHHhccCCCCH-HHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 026151 23 VITREEWEKKLNDVKIRK-EDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVN 101 (242)
Q Consensus 23 ~~~~~~~~~~l~~~~~~~-~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~ 101 (242)
.-|.+...-..++...-| .+--+..+.||...||.|....+.+.+.+..... ...+|++++....-+.......
T Consensus 147 idd~~~~~~~~~~~~~~re~~a~r~cL~~fr~~G~~DI~e~l~k~~~~~Ieh~-----~l~~i~d~l~~~gd~~~e~i~~ 221 (723)
T KOG2437|consen 147 IDDPDIVQPCLNWYSKYREQEAIRLCLKHFRQHGYTDIFESLQKKTKIAIEHP-----MLTDIHDKLVLKGDACEELIEK 221 (723)
T ss_pred CCCHHHHhHHHHHHHHhhHHHHHHHHHHHHHHcCchHHHHHHHHhhcccCCCh-----HHHHHHHHHHHcccHHHHHHHh
Confidence 344444433333333333 3355788999999999999999999998764322 2466788776544444444555
Q ss_pred hhChhhhh
Q 026151 102 DLNPEILD 109 (242)
Q Consensus 102 ~~~p~l~~ 109 (242)
...|.++.
T Consensus 222 ~~~~~lf~ 229 (723)
T KOG2437|consen 222 AVNDGLFN 229 (723)
T ss_pred hhccHHHh
Confidence 55566554
No 57
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=27.47 E-value=1.6e+02 Score=28.55 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=44.7
Q ss_pred hcccCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHH
Q 026151 19 MSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIE 98 (242)
Q Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~ 98 (242)
..|+.-.+.....-+..++++.++-..=++..+...|+.++++..++-.|. +++.+|++.+|+.
T Consensus 383 ~~c~~~g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~----------------~~~~~~~~g~AL~ 446 (566)
T PF07575_consen 383 SSCPDEGRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ----------------RLLKEGRYGEALS 446 (566)
T ss_dssp HS-SSS-HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH----------------HHHHHHHHHHHHH
T ss_pred HHCChhhHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------HHHHCCCHHHHHH
Confidence 456777788888889999998877777777888899999999988877653 2345566666666
Q ss_pred HHHh
Q 026151 99 KVND 102 (242)
Q Consensus 99 ~i~~ 102 (242)
|..+
T Consensus 447 ~~~r 450 (566)
T PF07575_consen 447 WFIR 450 (566)
T ss_dssp HHH-
T ss_pred HHHH
Confidence 6643
No 58
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=27.26 E-value=2.1e+02 Score=21.81 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 44 NKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 44 ~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
...|..|+...| ..+.++++.|+.
T Consensus 39 ~~Fi~~Fi~~rG---nlKe~e~~lgiS 62 (113)
T PF09862_consen 39 LEFIKLFIKNRG---NLKEMEKELGIS 62 (113)
T ss_pred HHHHHHHHHhcC---CHHHHHHHHCCC
Confidence 456777888888 455566666654
No 59
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.05 E-value=6e+02 Score=25.77 Aligned_cols=108 Identities=20% Similarity=0.289 Sum_probs=66.3
Q ss_pred HhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC----------CCCHHhHHHHHHHHHHHhcCCHHHHHHHHH
Q 026151 32 KLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP----------DIDLATITDRMAVKKAVQCGNVEDAIEKVN 101 (242)
Q Consensus 32 ~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~----------~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~ 101 (242)
.+++-+.-...+.+++-.|+.-++|+-. +...+.-+++. -+|.-.+-.|+-|+.++-.|+++.-.+.+|
T Consensus 413 ~f~n~s~~~~~mQel~~~y~~LE~yfm~-esv~kAi~ld~ye~~~~~~SSmVDDV~yivrk~irRA~~T~si~~~~a~iN 491 (773)
T KOG0412|consen 413 KFLNNSRVLTKMQELIRNYLLLEEYFML-ESVQKAIKLDEYEDAGQLTSSMVDDVFYIVRKCIRRALSTSSIDSLCAFIN 491 (773)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccccCCcchhhhhhhHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3444444456788999999999999621 12222222221 234445688999999999999999999999
Q ss_pred hhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 026151 102 DLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPR 146 (242)
Q Consensus 102 ~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~ 146 (242)
+.-+.+ .++ ...+.+++.- -++ +....|.+.++..|...
T Consensus 492 ~~~~~l-~nd---f~~~L~~kLr-s~~-~~~~sa~N~i~s~lq~~ 530 (773)
T KOG0412|consen 492 EATALL-DND---FLVALQSKLR-SIQ-GGAASALNIIQSSLQAG 530 (773)
T ss_pred HHHHHh-cch---HHHHHHHHHH-Hhh-hhhhhHHHHHHHHHHHH
Confidence 965544 322 1112233322 222 34667777777766544
No 60
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=25.85 E-value=4.1e+02 Score=27.09 Aligned_cols=92 Identities=20% Similarity=0.157 Sum_probs=64.6
Q ss_pred hC-CCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc--CcchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 67 SG-TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT--NPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 67 ~~-i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~--~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
+| +....+...+...++|...+..|+- +...+|.+.+. -.+.+++=.+.-|++.+-+++..+++-..++.+
T Consensus 25 sg~l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~ 98 (757)
T COG5096 25 SGRLESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQ 98 (757)
T ss_pred cccccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 45 5555667778888889888888976 45555665542 245777777888888888999999999999888
Q ss_pred cccccCCHHHHHHHHHHhhhh
Q 026151 144 APRGEENQSFLEELERTVALL 164 (242)
Q Consensus 144 ~~~~~~~~~~~~~l~~~~~LL 164 (242)
..+.+.++....--=+.++++
T Consensus 99 kDl~d~N~~iR~~AlR~ls~l 119 (757)
T COG5096 99 KDLQDPNEEIRGFALRTLSLL 119 (757)
T ss_pred hhccCCCHHHHHHHHHHHHhc
Confidence 888877765433333333333
No 61
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=25.39 E-value=2.1e+02 Score=18.92 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHH--HHhcCChHHHHHHHHHhh
Q 026151 88 VQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE--LIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 88 I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIE--li~~~~~~~Al~~~r~~l 143 (242)
...|++++|+++.++--......+..-........=+- ....|+..+|+++.++-+
T Consensus 16 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 16 RELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788888888887654331111111111111111111 224577888888877643
No 62
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=23.87 E-value=2.2e+02 Score=23.70 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCc------chhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 79 TDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNP------QLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 79 ~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~------~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
..|.+|.+.+- -+++.-++++...+..+.+..+ .+...+..-.|.++++.|+..+|.+++.+.+
T Consensus 135 ~lr~~ie~~l~-~~~~~~~~~~~~~R~~~k~~~~~~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 204 (205)
T TIGR01470 135 LLRERIETLLP-PSLGDLATLAATWRDAVKKRLPNGAARRRFWEKFFDGAFAERVLAGREEQAERVLATRL 204 (205)
T ss_pred HHHHHHHHhcc-hhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHhccHHHHHHHcCCHHHHHHHHHHhh
Confidence 34555555543 3567777777777776654322 2333444456788899999998888877654
No 63
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=23.51 E-value=1e+02 Score=23.67 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcccCCChHHHHHHhccCCCCHHHHHHHHHHHHHHhC
Q 026151 8 IRQLAEIEAMAMSKKVITREEWEKKLNDVKIRKEDMNKLVMNFLVTEG 55 (242)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~G 55 (242)
|-.||-|-++.-+++.|-..+...++.| .++|+.++-++++-+|
T Consensus 64 ilelAgNaA~d~kkkri~PrHlqlAIrn----D~EL~~l~~~~tIa~G 107 (132)
T COG5262 64 ILELAGNAARDNKKKRIIPRHLQLAIRN----DEELNKLLGDVTIAQG 107 (132)
T ss_pred HHHHhhhhhhhcCcceechHHHHHHhcC----cHHHHHHhhhheeecC
Confidence 4466777889999999999999888877 6899999999998887
No 64
>PRK07111 anaerobic ribonucleoside triphosphate reductase; Provisional
Probab=23.46 E-value=2.7e+02 Score=28.19 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHH
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFR 64 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~ 64 (242)
.++-..+..+|..-|...||.++|+++.
T Consensus 58 ~isve~IqDiVe~~L~~~g~~~vAkaYI 85 (735)
T PRK07111 58 EVTVEDIQDLVEKVLIENGHAETAKAYI 85 (735)
T ss_pred CCCHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 5778889999999999999999999985
No 65
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=22.60 E-value=5.4e+02 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.102 Sum_probs=9.4
Q ss_pred HHhcCCHHHHHHHHHh
Q 026151 87 AVQCGNVEDAIEKVND 102 (242)
Q Consensus 87 ~I~~G~~~~Ai~~i~~ 102 (242)
....|++++|++.+..
T Consensus 151 ~~~~g~~~~A~~~~~~ 166 (389)
T PRK11788 151 YQQEKDWQKAIDVAER 166 (389)
T ss_pred HHHhchHHHHHHHHHH
Confidence 3456666666666554
No 66
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.54 E-value=1.2e+02 Score=16.09 Aligned_cols=20 Identities=25% Similarity=0.551 Sum_probs=15.6
Q ss_pred HHHHHhcCCHHHHHHHHHhh
Q 026151 84 VKKAVQCGNVEDAIEKVNDL 103 (242)
Q Consensus 84 I~~~I~~G~~~~Ai~~i~~~ 103 (242)
|......|++++|.+..++.
T Consensus 7 i~~~~~~~~~~~a~~~~~~M 26 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEM 26 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55677889999998887754
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=21.43 E-value=7.5e+02 Score=23.92 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhCHHHHHHHHHHHh-CCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHH
Q 026151 43 MNKLVMNFLVTEGYVDAAEKFRMES-GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQ 121 (242)
Q Consensus 43 l~~LI~~yL~~~Gy~~ta~~f~~E~-~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q 121 (242)
+.-++++|..+.|-.+.|-.+..++ ..+|. ..+.+-.+-+| .-..|++.+|.++++.-+.--... -- |-.-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari--lKh~G~~~~Aa~~~~~Ar~LD~~D-Ry----iNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI--LKHAGDLKEAAEAMDEARELDLAD-RY----INSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH--HHHCCCHHHHHHHHHHHHhCChhh-HH----HHHH
Confidence 5578899999999888887777654 33332 23333222222 335788888888887643211111 00 0000
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 026151 122 RLIELIRNGKVEEALEFAQE 141 (242)
Q Consensus 122 ~fIEli~~~~~~~Al~~~r~ 141 (242)
.---++|.|.+.+|.+.+..
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHh
Confidence 11125566777777666553
No 68
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=21.09 E-value=1.4e+02 Score=18.83 Aligned_cols=19 Identities=26% Similarity=0.226 Sum_probs=15.8
Q ss_pred ChhhHHHHHHHHHHHHHhh
Q 026151 179 DISQRLKTASEVNAAILTS 197 (242)
Q Consensus 179 ~~~~r~~la~~vn~~il~~ 197 (242)
.+.+|..+|+.|..++..+
T Consensus 25 ~~~qR~~iAe~Fa~AL~~S 43 (44)
T PF07208_consen 25 PPAQRQAIAEKFAQALKSS 43 (44)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 4789999999999998754
No 69
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=20.71 E-value=1.9e+02 Score=21.86 Aligned_cols=10 Identities=30% Similarity=0.501 Sum_probs=4.0
Q ss_pred hHHHHHHHHH
Q 026151 132 VEEALEFAQE 141 (242)
Q Consensus 132 ~~~Al~~~r~ 141 (242)
+..|++|+++
T Consensus 112 ~~~a~~~~~~ 121 (140)
T smart00299 112 YEKAIEYFVK 121 (140)
T ss_pred HHHHHHHHHh
Confidence 3344444433
No 70
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=20.49 E-value=1.4e+02 Score=16.02 Aligned_cols=20 Identities=10% Similarity=0.479 Sum_probs=15.7
Q ss_pred HHHHHhcCCHHHHHHHHHhh
Q 026151 84 VKKAVQCGNVEDAIEKVNDL 103 (242)
Q Consensus 84 I~~~I~~G~~~~Ai~~i~~~ 103 (242)
|..+...|+++.|.+.++..
T Consensus 8 l~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 8 LRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66677889999998887653
Done!