Query 026151
Match_columns 242
No_of_seqs 137 out of 830
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 06:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 95.3 0.018 6.3E-07 40.9 4.0 54 40-99 10-63 (88)
2 2xtc_A F-box-like/WD repeat-co 94.6 0.033 1.1E-06 39.7 3.9 34 37-70 2-35 (90)
3 2nxp_A Transcription initiatio 87.9 0.7 2.4E-05 36.0 5.0 78 96-176 34-111 (156)
4 1vyh_C Platelet-activating fac 87.3 0.11 3.8E-06 45.8 0.0 54 40-99 8-61 (410)
5 2d68_A FOP, FGFR1OP; alpha hel 83.3 1.3 4.5E-05 30.8 3.9 30 41-70 19-48 (82)
6 2j4b_A TAF5, transcription ini 72.2 10 0.00036 28.6 6.5 63 96-162 15-77 (138)
7 2j49_A Transcription initiatio 67.2 4.4 0.00015 31.2 3.4 50 97-147 18-67 (148)
8 2y4t_A DNAJ homolog subfamily 60.2 78 0.0027 26.8 11.4 59 84-143 264-322 (450)
9 2xz2_A CSTF-50, isoform B; RNA 49.5 20 0.00067 23.7 3.6 33 39-71 15-47 (66)
10 2xpi_A Anaphase-promoting comp 42.5 1.8E+02 0.0061 25.6 11.1 62 82-143 155-227 (597)
11 3q15_A PSP28, response regulat 36.9 94 0.0032 26.0 7.2 29 38-66 7-37 (378)
12 4b4t_R RPN7, 26S proteasome re 34.8 1.7E+02 0.0058 25.8 8.8 105 40-146 130-238 (429)
13 3mkr_A Coatomer subunit epsilo 34.2 1.9E+02 0.0064 23.5 10.7 94 37-143 61-157 (291)
14 3u4t_A TPR repeat-containing p 33.6 1.6E+02 0.0055 22.6 10.1 53 87-144 84-136 (272)
15 3ieg_A DNAJ homolog subfamily 32.0 1.9E+02 0.0065 22.9 13.6 15 88-102 199-213 (359)
16 2y4t_A DNAJ homolog subfamily 28.9 2.5E+02 0.0087 23.4 10.9 112 25-144 11-122 (450)
17 2cp9_A EF-TS, EF-TSMT, elongat 27.7 32 0.0011 22.5 1.9 20 84-103 27-48 (64)
18 2xpi_A Anaphase-promoting comp 27.6 3.1E+02 0.011 24.0 13.1 97 39-143 406-502 (597)
19 3u3w_A Transcriptional activat 27.2 2.4E+02 0.0081 22.5 9.3 86 58-144 47-143 (293)
20 3sjr_A Uncharacterized protein 25.7 1.5E+02 0.0052 22.9 5.7 61 100-161 101-161 (175)
21 2v5f_A Prolyl 4-hydroxylase su 25.6 1.5E+02 0.0053 19.8 7.0 58 86-143 14-73 (104)
22 4a18_Q RPL36, 60S ribosomal pr 25.5 80 0.0027 22.6 3.9 33 116-148 51-86 (104)
23 2ho1_A Type 4 fimbrial biogene 25.1 2.2E+02 0.0076 21.4 13.9 55 86-143 114-168 (252)
24 2eap_A Lymphocyte cytosolic pr 23.8 55 0.0019 22.9 2.7 24 46-70 26-49 (90)
25 2dna_A Unnamed protein product 22.8 90 0.0031 20.5 3.5 25 81-105 34-60 (67)
26 1whc_A RSGI RUH-027, UBA/UBX 3 22.4 95 0.0033 19.9 3.6 17 90-106 35-51 (64)
27 1oyi_A Double-stranded RNA-bin 22.2 37 0.0013 23.3 1.5 46 40-93 15-60 (82)
28 3sxm_A Transcriptional regulat 21.4 1.1E+02 0.0037 21.7 4.2 29 76-104 98-126 (140)
29 2knz_A Ubiquilin-4; cytoplasm, 21.2 1.1E+02 0.0036 18.8 3.5 16 89-104 36-51 (53)
30 1k8k_G P16, ARP2/3 complex 16 21.1 93 0.0032 23.9 3.8 26 81-106 39-64 (151)
31 2bwb_A Ubiquitin-like protein 20.1 1.1E+02 0.0037 18.3 3.2 13 89-101 32-44 (46)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=95.27 E-value=0.018 Score=40.85 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026151 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~ 99 (242)
+.+|++-|++||..+||.+++.+|.+|++++.. +.. .....-+++.+|...+..
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~-~~~-----~~ky~gLLEKKWTSViRL 63 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN-EEL-----DKKYAGLLEKKWTSVIRL 63 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC-HHH-----HHHHTTHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC-chh-----hhhhhhhhhhhHHHHHHH
Confidence 468999999999999999999999999988643 111 012334566666655544
No 2
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=94.64 E-value=0.033 Score=39.72 Aligned_cols=34 Identities=29% Similarity=0.491 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 37 KIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
+++.+++|.||.-||...||..||-+|.+|+++.
T Consensus 2 sitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 2 SITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 5678999999999999999999999999999875
No 3
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=87.90 E-value=0.7 Score=36.05 Aligned_cols=78 Identities=17% Similarity=0.042 Sum_probs=50.1
Q ss_pred HHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhhhhhccCCCCCccc
Q 026151 96 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVALLAFEDVSNCPVG 175 (242)
Q Consensus 96 Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~LL~~~~~~~sp~~ 175 (242)
-..|++.........-..+.|=+.++-|++||.+|...+|-+|.+++-.-+...+ .+.++.+.++..-.+..+.++.
T Consensus 34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~---~~~i~~L~~i~~~~~l~~n~~~ 110 (156)
T 2nxp_A 34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYY---QDDLRVLSSLTKKEHMKGNETM 110 (156)
T ss_dssp HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGG---HHHHHHHHTCCSHHHHTTCGGG
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHH---HHHHHHHhcCCCHHHHhhcHHH
Confidence 3567666432222222678999999999999999999999999997766554333 4566665554433333333433
Q ss_pred c
Q 026151 176 D 176 (242)
Q Consensus 176 ~ 176 (242)
.
T Consensus 111 ~ 111 (156)
T 2nxp_A 111 L 111 (156)
T ss_dssp G
T ss_pred H
Confidence 3
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=87.32 E-value=0.11 Score=45.81 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHH
Q 026151 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEK 99 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~ 99 (242)
+++++++|++||..+||.+++.+|.+|.+++.... .......+.+++|+..++.
T Consensus 8 ~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~~~~~------~~~~~~~~~~~~w~~~~~l 61 (410)
T 1vyh_C 8 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEE------LDKKYAGLLEKKWTSVIRL 61 (410)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHhCCCCCcc------hhhhhhchhhhhhhheeeH
Confidence 67899999999999999999999999998754221 1223455677888777664
No 5
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=83.26 E-value=1.3 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 41 EDMNKLVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 41 ~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
..++.||.+||...||.=|...|..|+|.+
T Consensus 19 rLi~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 19 RLVASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 568899999999999999999999999986
No 6
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=72.19 E-value=10 Score=28.64 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHhh
Q 026151 96 AIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTVA 162 (242)
Q Consensus 96 Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~~ 162 (242)
-.+|++..-......-..+.|=+.++-|++||.+|...+|-+|..++-..+... .++++.+.+
T Consensus 15 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~----~~~i~~L~~ 77 (138)
T 2j4b_A 15 LKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK----SEEIKQFES 77 (138)
T ss_dssp HHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C----HHHHHHHTT
T ss_pred HHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH----HHHHHHHhc
Confidence 356666642211112257899999999999999999999999998765555322 345555444
No 7
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=67.23 E-value=4.4 Score=31.24 Aligned_cols=50 Identities=8% Similarity=-0.058 Sum_probs=35.5
Q ss_pred HHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccc
Q 026151 97 IEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRG 147 (242)
Q Consensus 97 i~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~ 147 (242)
.+|++..-......-..+.|=+.++-|++||.+| ..+|-+|..++-..+.
T Consensus 18 r~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~ 67 (148)
T 2j49_A 18 KNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFK 67 (148)
T ss_dssp HHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGH
T ss_pred HHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhH
Confidence 5666654211111125689999999999999999 9999999987655443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=60.24 E-value=78 Score=26.75 Aligned_cols=59 Identities=15% Similarity=0.147 Sum_probs=31.8
Q ss_pred HHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 84 VKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 84 I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
.......|++++|++++++... +...++.....++...-.-+.+.|+..+|+.+.++-+
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMK-TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445677888888888766421 1111111112222222233455677888888777644
No 9
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=49.48 E-value=20 Score=23.69 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCC
Q 026151 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEP 71 (242)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~ 71 (242)
+|+.|-+||..-|..-||...|..|....+..+
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 378899999999999999999999999988654
No 10
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=42.48 E-value=1.8e+02 Score=25.62 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=35.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhhChhhh-----------hcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 82 MAVKKAVQCGNVEDAIEKVNDLNPEIL-----------DTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 82 ~~I~~~I~~G~~~~Ai~~i~~~~p~l~-----------~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
..+.-....|++++|++.+++..|.-. ..........+...-.-+.+.|+..+|+++.++-+
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 227 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334555678888888888876444320 00001112222222233556789999999888754
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=36.89 E-value=94 Score=26.00 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHHH--HHhCHHHHHHHHHHH
Q 026151 38 IRKEDMNKLVMNFL--VTEGYVDAAEKFRME 66 (242)
Q Consensus 38 ~~~~~l~~LI~~yL--~~~Gy~~ta~~f~~E 66 (242)
++...|..+|-+|- +..+-.+.|..+.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~ 37 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAE 37 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 44566666666665 555555555555554
No 12
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.76 E-value=1.7e+02 Score=25.76 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhCHHHHH-HHHHHHhC--CCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhc-Ccchh
Q 026151 40 KEDMNKLVMNFLVTEGYVDAA-EKFRMESG--TEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDT-NPQLF 115 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta-~~f~~E~~--i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~-~~~L~ 115 (242)
......-.++|+...|-.+.| +.+.+-.. ..+....+ -....|+-++..|||..|...+++-....... +....
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid--~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKID--VMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHH--HHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 344556678888888854333 44433211 11111122 23566788899999999999998865433332 23344
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhccc
Q 026151 116 FHLQQQRLIELIRNGKVEEALEFAQEELAPR 146 (242)
Q Consensus 116 F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~ 146 (242)
-.++++.=+-.+..++...|-.+...-+..+
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 4555555555556677877777665544443
No 13
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.18 E-value=1.9e+02 Score=23.48 Aligned_cols=94 Identities=10% Similarity=0.055 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHHhCHH-HHHHHHHHHh--CCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcc
Q 026151 37 KIRKEDMNKLVMNFLVTEGYV-DAAEKFRMES--GTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQ 113 (242)
Q Consensus 37 ~~~~~~l~~LI~~yL~~~Gy~-~ta~~f~~E~--~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~ 113 (242)
+.+.-....++++|+...|-. ++...|.+-. +..|.. .... ...-.-....|++++|++++++ | ..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~-~~~~--~~la~~~~~~g~~~~Al~~l~~--~------~~ 129 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-TTFL--LMAASIYFYDQNPDAALRTLHQ--G------DS 129 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-HHHH--HHHHHHHHHTTCHHHHHHHHTT--C------CS
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-HHHH--HHHHHHHHHCCCHHHHHHHHhC--C------CC
Confidence 344445567788888888844 4445555433 222321 1111 1111234578999999999887 2 11
Q ss_pred hhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 114 LFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 114 L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
....+ ..-.-+.+.|+..+|+...++-+
T Consensus 130 ~~~~~--~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 130 LECMA--MTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHH--HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHCCCHHHHHHHHHHHH
Confidence 11111 11112456678888888777644
No 14
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=33.63 E-value=1.6e+02 Score=22.56 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 026151 87 AVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (242)
Q Consensus 87 ~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 144 (242)
....|+++.|++.+++.. +.++.. ...+...-.-+...|+..+|+++.++-+.
T Consensus 84 ~~~~~~~~~A~~~~~~a~----~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAV----DRDTTR-LDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHTTCHHHHHHHHHHHH----HHSTTC-THHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHcccHHHHHHHHHHHH----hcCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 456677777777776532 211111 11222222223456777777777776544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=31.99 E-value=1.9e+02 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=7.7
Q ss_pred HhcCCHHHHHHHHHh
Q 026151 88 VQCGNVEDAIEKVND 102 (242)
Q Consensus 88 I~~G~~~~Ai~~i~~ 102 (242)
...|++++|++++++
T Consensus 199 ~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 199 YQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 344555555555543
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=28.92 E-value=2.5e+02 Score=23.38 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=57.2
Q ss_pred ChHHHHHHhccCCCCHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026151 25 TREEWEKKLNDVKIRKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (242)
Q Consensus 25 ~~~~~~~~l~~~~~~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~ 104 (242)
....|.+.+..-+.+......+...|+...-|.++...|.+-....+.. .. .......-....|++++|++.+++..
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~--~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN-YI--AYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HH--HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc-HH--HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555544444555566666666556667777776655544422 21 22333445677899999999987632
Q ss_pred hhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhc
Q 026151 105 PEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELA 144 (242)
Q Consensus 105 p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~ 144 (242)
+.++.. ...+...-.-+...|+..+|+.+.++-+.
T Consensus 88 ----~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 88 ----QLKMDF-TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp ----HHCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ----hcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 222211 11111222224567899999998887654
No 17
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=27.67 E-value=32 Score=22.53 Aligned_cols=20 Identities=25% Similarity=0.220 Sum_probs=15.5
Q ss_pred HHHHH--hcCCHHHHHHHHHhh
Q 026151 84 VKKAV--QCGNVEDAIEKVNDL 103 (242)
Q Consensus 84 I~~~I--~~G~~~~Ai~~i~~~ 103 (242)
.+++| .+||++.|+.|+.+.
T Consensus 27 cKkAL~e~~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 27 CKKALETCGGDLKQAEIWLHKE 48 (64)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHH
Confidence 45555 379999999999864
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=27.58 E-value=3.1e+02 Score=23.96 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhh
Q 026151 39 RKEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHL 118 (242)
Q Consensus 39 ~~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L 118 (242)
+......++.-|....-+.++...|.+-..+.+... .. ......-....|++++|++.+++.. .+...+...
T Consensus 406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~---- 477 (597)
T 2xpi_A 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-LP--YLFLGMQHMQLGNILLANEYLQSSY-ALFQYDPLL---- 477 (597)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-HH--HHHHHHHHHHHTCHHHHHHHHHHHH-HHCCCCHHH----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-HH--HHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHH----
Confidence 344455555555554445555566665544443211 11 1223344456778888877776532 111111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 119 QQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 119 ~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
+...-.-+.+.|+..+|+++.++-+
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1122222345677777777776543
No 19
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=27.19 E-value=2.4e+02 Score=22.46 Aligned_cols=86 Identities=13% Similarity=0.040 Sum_probs=45.3
Q ss_pred HHHHHHHHHhCCCC--------CCCHHhHH-HHHHHHHHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHH--H
Q 026151 58 DAAEKFRMESGTEP--------DIDLATIT-DRMAVKKAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIE--L 126 (242)
Q Consensus 58 ~ta~~f~~E~~i~~--------~~~~~~~~-~r~~I~~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIE--l 126 (242)
++...+++-.|+++ ..+.+... ....+...+..|++++|++.+++.... ....+.....+.....+- .
T Consensus 47 ~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~ 125 (293)
T 3u3w_A 47 DILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK-EEYHPEFQQFLQWQYYVAAYV 125 (293)
T ss_dssp HHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHHHH
Confidence 45555566666542 11222222 234577888999999999998764211 011111111111111111 2
Q ss_pred HhcCChHHHHHHHHHhhc
Q 026151 127 IRNGKVEEALEFAQEELA 144 (242)
Q Consensus 127 i~~~~~~~Al~~~r~~l~ 144 (242)
...++..+|+.+.++-+.
T Consensus 126 ~~~~~~~~Ai~~~~~al~ 143 (293)
T 3u3w_A 126 LKKVDYEYCILELKKLLN 143 (293)
T ss_dssp TTSSCHHHHHHHHHHHHH
T ss_pred HcccCHHHHHHHHHHHHH
Confidence 345688999998888765
No 20
>3sjr_A Uncharacterized protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; 2.94A {Chromobacterium violaceum}
Probab=25.65 E-value=1.5e+02 Score=22.92 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=38.8
Q ss_pred HHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhhcccccCCHHHHHHHHHHh
Q 026151 100 VNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEELAPRGEENQSFLEELERTV 161 (242)
Q Consensus 100 i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l~~~~~~~~~~~~~l~~~~ 161 (242)
....++.-...|+.+.+.=..+.|+++|+.| +++-..=|+.-|.-+.--.......+.++.
T Consensus 101 aT~FF~~yq~qhPd~~~ee~L~~Fm~lIgGG-iEqGF~EArdIL~GL~VleG~IA~~IdkTY 161 (175)
T 3sjr_A 101 MEILMELYRQQHPDWTAPAIRQAFAPLARAG-LERGYQEACQVLRQLNVYTPAVAGQLQGLL 161 (175)
T ss_dssp HHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHhHHHHHHHHhhccccCcHHHHhHHHHH
Confidence 3344444556789999999999999999976 666666666655544332333344444433
No 21
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.59 E-value=1.5e+02 Score=19.81 Aligned_cols=58 Identities=9% Similarity=0.004 Sum_probs=34.1
Q ss_pred HHHhcCCHHHHHHHHHhhChhhhhcC--cchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 86 KAVQCGNVEDAIEKVNDLNPEILDTN--PQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 86 ~~I~~G~~~~Ai~~i~~~~p~l~~~~--~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
.+...|++..|+.|.+.-........ ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 35678999999999987532221111 01111222222233457789999999888754
No 22
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=25.52 E-value=80 Score=22.64 Aligned_cols=33 Identities=30% Similarity=0.530 Sum_probs=26.8
Q ss_pred hhhHHHHHHHHHhcCC---hHHHHHHHHHhhccccc
Q 026151 116 FHLQQQRLIELIRNGK---VEEALEFAQEELAPRGE 148 (242)
Q Consensus 116 F~L~~q~fIEli~~~~---~~~Al~~~r~~l~~~~~ 148 (242)
|-=+..+.+||++.+. -..|+.|+++.+..+..
T Consensus 51 faPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~R 86 (104)
T 4a18_Q 51 FAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRR 86 (104)
T ss_dssp CCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHH
T ss_pred CchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHH
Confidence 3445668899999988 78999999999987754
No 23
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=25.07 E-value=2.2e+02 Score=21.44 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=27.1
Q ss_pred HHHhcCCHHHHHHHHHhhChhhhhcCcchhhhhHHHHHHHHHhcCChHHHHHHHHHhh
Q 026151 86 KAVQCGNVEDAIEKVNDLNPEILDTNPQLFFHLQQQRLIELIRNGKVEEALEFAQEEL 143 (242)
Q Consensus 86 ~~I~~G~~~~Ai~~i~~~~p~l~~~~~~L~F~L~~q~fIEli~~~~~~~Al~~~r~~l 143 (242)
-....|++++|++++++... ....+. ....+...-.-+...|+..+|+.+.++-+
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ--DTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT--CTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHh--CccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567777777777765432 001111 11111111122345667777777776644
No 24
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=55 Score=22.85 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=20.0
Q ss_pred HHHHHHHHhCHHHHHHHHHHHhCCC
Q 026151 46 LVMNFLVTEGYVDAAEKFRMESGTE 70 (242)
Q Consensus 46 LI~~yL~~~Gy~~ta~~f~~E~~i~ 70 (242)
=|++||-..||.+ +..|++...|.
T Consensus 26 ~VadWLkk~g~~~-cd~lv~Kh~ID 49 (90)
T 2eap_A 26 SLADYFKKLNYKD-CEKAVKKYHID 49 (90)
T ss_dssp THHHHHHHTTCHH-HHHHHHHTTCC
T ss_pred HHHHHHHHcCCch-HHHHHHHhccC
Confidence 4889999999999 89998776554
No 25
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.82 E-value=90 Score=20.49 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=17.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHhhCh
Q 026151 81 RMAVKKAV--QCGNVEDAIEKVNDLNP 105 (242)
Q Consensus 81 r~~I~~~I--~~G~~~~Ai~~i~~~~p 105 (242)
++...+++ ..||++.|++|+-.+.+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 33434443 36999999999987654
No 26
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=22.40 E-value=95 Score=19.89 Aligned_cols=17 Identities=12% Similarity=0.226 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHhhChh
Q 026151 90 CGNVEDAIEKVNDLNPE 106 (242)
Q Consensus 90 ~G~~~~Ai~~i~~~~p~ 106 (242)
+|+++.|++|+-.+.+.
T Consensus 35 ~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 35 NQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp SCCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhCCCC
Confidence 57899999999877543
No 27
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=22.20 E-value=37 Score=23.32 Aligned_cols=46 Identities=13% Similarity=0.104 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCCCCCHHhHHHHHHHHHHHhcCCH
Q 026151 40 KEDMNKLVMNFLVTEGYVDAAEKFRMESGTEPDIDLATITDRMAVKKAVQCGNV 93 (242)
Q Consensus 40 ~~~l~~LI~~yL~~~Gy~~ta~~f~~E~~i~~~~~~~~~~~r~~I~~~I~~G~~ 93 (242)
-..+.+-|+++|..+| -++..++++.|+... ..|+++..+-.+|-+
T Consensus 15 ~~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~------aVr~~L~~Le~eG~I 60 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR------EVNKALYDLQRSAMV 60 (82)
T ss_dssp SHHHHHHHHHHHSSST--EEHHHHHHHSSSCHH------HHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH------HHHHHHHHHHHCCCE
Confidence 4556777789999999 899999999998531 236667666666654
No 28
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=21.39 E-value=1.1e+02 Score=21.73 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.7
Q ss_pred HhHHHHHHHHHHHhcCCHHHHHHHHHhhC
Q 026151 76 ATITDRMAVKKAVQCGNVEDAIEKVNDLN 104 (242)
Q Consensus 76 ~~~~~r~~I~~~I~~G~~~~Ai~~i~~~~ 104 (242)
..+.+=..|.++|.+||.+.|.+.+..+.
T Consensus 98 ~~~~eH~~I~~Ai~~~D~~~A~~~~~~Hl 126 (140)
T 3sxm_A 98 VSNREHKELIERIISGDKEGAIEKLKEHL 126 (140)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556667788888888888877776653
No 29
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=21.21 E-value=1.1e+02 Score=18.80 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=12.8
Q ss_pred hcCCHHHHHHHHHhhC
Q 026151 89 QCGNVEDAIEKVNDLN 104 (242)
Q Consensus 89 ~~G~~~~Ai~~i~~~~ 104 (242)
..||++.|++|+-.+.
T Consensus 36 t~gnve~Ave~L~~~~ 51 (53)
T 2knz_A 36 TGGDINAAIERLLGSQ 51 (53)
T ss_dssp HTSCHHHHHHHHHHCC
T ss_pred hCCCHHHHHHHHHHcC
Confidence 4689999999987653
No 30
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=21.14 E-value=93 Score=23.85 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhhChh
Q 026151 81 RMAVKKAVQCGNVEDAIEKVNDLNPE 106 (242)
Q Consensus 81 r~~I~~~I~~G~~~~Ai~~i~~~~p~ 106 (242)
-.+|+++|..|+..+|+..+-++-|-
T Consensus 39 ~~qv~~lL~~g~~~~ALk~~L~~pP~ 64 (151)
T 1k8k_G 39 EGEVDSCLRQGNMTAALQAALKNPPI 64 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTSSCCS
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 56799999999999999999887654
No 31
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=20.13 E-value=1.1e+02 Score=18.25 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHH
Q 026151 89 QCGNVEDAIEKVN 101 (242)
Q Consensus 89 ~~G~~~~Ai~~i~ 101 (242)
..||++.|++|+-
T Consensus 32 ~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 32 SGGSVQGALDSLL 44 (46)
T ss_dssp HTTCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 4789999999874
Done!