BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026154
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WRM|A Chain A, Crystal Structure Of Jsp-1
Length = 165
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 3/139 (2%)
Query: 104 GLYVGGWPNSMTTLPPGNPAIIDCTCEFPKLR-EFEGHSYLCVPTWDTRSPQ-PGEIESA 161
GLY+G + ++ + R EG YLC+P D+ S + +
Sbjct: 13 GLYIGNFKDARDAEQLSKNKVTHILSVHDSARPMLEGVKYLCIPAADSPSQNLTRHFKES 72
Query: 162 VKWGSRKRAQNRPVFVHCAYGHGRSXXXXXXXXXXXSIVEDWREAEKLIKKRRPNIQMNA 221
+K+ R + VHC G RS + W +A ++ R N
Sbjct: 73 IKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTVTDF-GWEDALHTVRAGRSCANPNV 131
Query: 222 LQRKALEEWSKHRLSTARR 240
++ L+E+ KH + R+
Sbjct: 132 GFQRQLQEFEKHEVHQYRQ 150
>pdb|3RGO|A Chain A, Crystal Structure Of Ptpmt1
Length = 157
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 8/117 (6%)
Query: 129 CEFPKLREFEGHSYLCVPTWD-TRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSX 187
C K + G L + T D T P + V++ + +A + V+VHC G RS
Sbjct: 45 CNTSKEWKKAGVEQLRLSTVDMTGVPTLANLHKGVQFALKYQALGQCVYVHCKAGRSRSA 104
Query: 188 XXXXXXXXXXSIVEDW--REAEKLIKKRRPNIQMNALQRKALEEWSKHRLSTARREK 242
V +W EA + I K R +I + Q + L+E+ H+ TAR K
Sbjct: 105 TMVAAYLIQ---VHNWSPEEAIEAIAKIRSHISIRPSQLEVLKEF--HKEITARAAK 156
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 153 PQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRS 186
P P +I+ V+ A+ V VHCA G GR+
Sbjct: 69 PAPDQIDRFVQIVDEANARGEAVGVHCALGFGRT 102
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 153 PQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRS 186
P P +I+ V+ A+ V VHCA G GR+
Sbjct: 70 PAPDQIDRFVQIVDEANARGEAVGVHCALGFGRT 103
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 166 SRKRAQNRPVFVHCAYGHGRS 186
R A+ RP+ VHC+ G GRS
Sbjct: 229 DRIGAEQRPIVVHCSAGVGRS 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,551,371
Number of Sequences: 62578
Number of extensions: 239223
Number of successful extensions: 555
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 5
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)