Query 026154
Match_columns 242
No_of_seqs 316 out of 1495
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026154.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026154hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12361 hypothetical protein; 100.0 3.7E-51 8E-56 390.2 27.0 230 3-237 5-240 (547)
2 smart00195 DSPc Dual specifici 100.0 4.6E-31 1E-35 208.7 15.4 134 98-233 1-138 (138)
3 KOG1719 Dual specificity phosp 100.0 9.6E-30 2.1E-34 200.5 12.4 162 71-238 3-174 (183)
4 cd00127 DSPc Dual specificity 100.0 9.3E-29 2E-33 195.0 14.8 133 98-231 2-139 (139)
5 KOG1718 Dual specificity phosp 100.0 1.1E-28 2.3E-33 197.1 13.4 142 95-238 14-159 (198)
6 PF00782 DSPc: Dual specificit 99.9 5.7E-28 1.2E-32 189.6 8.5 128 105-233 1-133 (133)
7 KOG1717 Dual specificity phosp 99.9 3E-26 6.5E-31 194.9 11.8 142 97-239 171-317 (343)
8 KOG1716 Dual specificity phosp 99.9 1.1E-25 2.3E-30 199.0 15.6 141 96-237 73-219 (285)
9 PTZ00242 protein tyrosine phos 99.9 2.9E-24 6.3E-29 175.7 14.5 141 94-236 7-160 (166)
10 PTZ00393 protein tyrosine phos 99.9 7.8E-23 1.7E-27 173.9 14.8 114 119-235 115-230 (241)
11 KOG1720 Protein tyrosine phosp 99.8 4.9E-20 1.1E-24 152.5 13.8 112 119-232 93-206 (225)
12 COG2453 CDC14 Predicted protei 99.8 8.7E-19 1.9E-23 145.2 13.0 100 135-234 68-167 (180)
13 PF03162 Y_phosphatase2: Tyros 99.6 2.5E-15 5.4E-20 122.7 7.6 139 95-238 4-154 (164)
14 PF05706 CDKN3: Cyclin-depende 99.6 3.2E-15 6.9E-20 120.8 6.6 105 103-207 41-168 (168)
15 smart00404 PTPc_motif Protein 99.5 1.3E-13 2.8E-18 102.6 10.2 90 141-230 4-102 (105)
16 smart00012 PTPc_DSPc Protein t 99.5 1.3E-13 2.8E-18 102.6 10.2 90 141-230 4-102 (105)
17 TIGR01244 conserved hypothetic 99.5 3.6E-13 7.9E-18 106.5 12.0 111 98-215 2-126 (135)
18 KOG2836 Protein tyrosine phosp 99.4 5.6E-12 1.2E-16 97.9 11.5 135 95-232 6-154 (173)
19 PF04273 DUF442: Putative phos 99.3 3.1E-12 6.8E-17 97.6 5.8 90 98-192 2-105 (110)
20 smart00194 PTPc Protein tyrosi 99.3 1.5E-11 3.3E-16 106.9 10.6 88 142-229 161-254 (258)
21 PRK15375 pathogenicity island 99.3 2.2E-11 4.7E-16 113.4 11.6 96 141-236 425-531 (535)
22 cd00047 PTPc Protein tyrosine 99.3 1.9E-11 4.1E-16 104.5 9.9 83 147-229 138-227 (231)
23 KOG2283 Clathrin coat dissocia 99.3 2.3E-11 5E-16 112.7 10.0 139 97-235 14-175 (434)
24 PHA02740 protein tyrosine phos 99.2 4.6E-11 1E-15 106.4 10.9 108 123-232 164-285 (298)
25 PLN02727 NAD kinase 99.2 4.8E-11 1E-15 117.4 9.9 94 104-199 262-368 (986)
26 PHA02746 protein tyrosine phos 99.2 2.3E-10 4.9E-15 103.1 11.2 95 146-240 209-319 (323)
27 PHA02738 hypothetical protein; 99.2 2.1E-10 4.5E-15 103.2 10.1 112 121-234 163-293 (320)
28 PHA02742 protein tyrosine phos 99.1 4.6E-10 1E-14 100.3 11.8 92 145-236 189-297 (303)
29 PHA02747 protein tyrosine phos 99.1 9.3E-10 2E-14 98.7 11.4 89 146-234 191-298 (312)
30 KOG0792 Protein tyrosine phosp 99.0 8.4E-10 1.8E-14 109.1 9.4 86 146-231 1035-1126(1144)
31 PF00102 Y_phosphatase: Protei 99.0 2.7E-09 5.8E-14 90.5 9.6 89 142-230 138-232 (235)
32 COG5599 PTP2 Protein tyrosine 99.0 1.2E-09 2.6E-14 93.9 6.6 138 96-235 139-294 (302)
33 COG3453 Uncharacterized protei 98.9 2.7E-08 5.9E-13 75.9 9.9 109 98-213 3-125 (130)
34 PF14566 PTPlike_phytase: Inos 98.8 5.9E-09 1.3E-13 83.8 5.9 60 136-196 89-148 (149)
35 COG5350 Predicted protein tyro 98.8 6.1E-08 1.3E-12 77.0 9.8 110 118-228 30-149 (172)
36 PF13350 Y_phosphatase3: Tyros 98.7 3.5E-08 7.5E-13 80.3 6.6 105 101-207 16-157 (164)
37 KOG0790 Protein tyrosine phosp 98.7 1.2E-08 2.5E-13 93.2 2.9 93 140-232 415-518 (600)
38 KOG1572 Predicted protein tyro 98.5 4.6E-07 1E-11 77.0 8.9 113 95-211 57-185 (249)
39 KOG0791 Protein tyrosine phosp 98.5 8.3E-07 1.8E-11 79.7 9.8 97 138-236 253-355 (374)
40 PF04179 Init_tRNA_PT: Initiat 98.5 4.6E-06 1E-10 78.1 14.4 130 101-230 292-449 (451)
41 KOG0789 Protein tyrosine phosp 98.3 3.6E-06 7.9E-11 77.7 9.8 91 141-231 266-363 (415)
42 KOG2386 mRNA capping enzyme, g 98.2 3.4E-06 7.3E-11 77.1 7.1 114 120-234 63-185 (393)
43 COG2365 Protein tyrosine/serin 98.2 8.4E-06 1.8E-10 70.9 8.8 116 103-221 53-184 (249)
44 KOG4228 Protein tyrosine phosp 98.0 1.2E-05 2.6E-10 80.8 7.2 97 139-235 983-1085(1087)
45 KOG4228 Protein tyrosine phosp 97.9 9.1E-06 2E-10 81.7 4.4 90 141-230 697-792 (1087)
46 KOG0793 Protein tyrosine phosp 97.9 2.3E-05 5E-10 75.4 6.7 88 141-228 894-988 (1004)
47 PF14671 DSPn: Dual specificit 96.7 0.0048 1E-07 49.1 6.2 102 101-215 4-112 (141)
48 KOG4471 Phosphatidylinositol 3 93.6 0.12 2.6E-06 49.7 5.2 33 160-192 362-394 (717)
49 COG0607 PspE Rhodanese-related 93.5 0.16 3.4E-06 37.4 4.8 67 119-198 18-85 (110)
50 cd01518 RHOD_YceA Member of th 92.6 0.34 7.4E-06 35.5 5.5 27 170-198 59-85 (101)
51 PLN02160 thiosulfate sulfurtra 91.1 0.36 7.7E-06 37.9 4.3 22 169-191 78-99 (136)
52 cd01448 TST_Repeat_1 Thiosulfa 89.7 0.79 1.7E-05 34.6 5.1 29 169-198 76-104 (122)
53 PF06602 Myotub-related: Myotu 88.8 0.87 1.9E-05 41.7 5.5 23 170-192 229-251 (353)
54 cd01522 RHOD_1 Member of the R 88.8 1.2 2.6E-05 33.8 5.4 71 122-198 16-88 (117)
55 cd01523 RHOD_Lact_B Member of 88.4 0.64 1.4E-05 33.8 3.6 26 170-197 59-84 (100)
56 KOG1089 Myotubularin-related p 87.9 0.82 1.8E-05 44.2 4.8 28 165-192 336-364 (573)
57 cd01520 RHOD_YbbB Member of th 84.9 2.3 4.9E-05 32.7 5.2 27 169-197 83-109 (128)
58 PRK01415 hypothetical protein; 84.4 2.6 5.7E-05 36.6 5.9 28 170-199 169-196 (247)
59 PRK00142 putative rhodanese-re 83.7 2.5 5.4E-05 38.1 5.6 27 171-199 170-196 (314)
60 PRK05320 rhodanese superfamily 80.9 3.7 8.1E-05 35.8 5.5 26 171-198 174-199 (257)
61 cd01533 4RHOD_Repeat_2 Member 80.5 4.4 9.4E-05 29.9 5.1 26 171-198 65-90 (109)
62 PF00581 Rhodanese: Rhodanese- 79.3 3.5 7.7E-05 29.9 4.2 70 120-192 12-86 (113)
63 TIGR03865 PQQ_CXXCW PQQ-depend 78.0 7.4 0.00016 31.4 6.0 19 170-188 114-132 (162)
64 cd01443 Cdc25_Acr2p Cdc25 enzy 75.7 6 0.00013 29.4 4.6 19 172-190 66-84 (113)
65 cd01519 RHOD_HSP67B2 Member of 74.9 4.8 0.0001 29.3 3.8 71 122-198 16-90 (106)
66 cd01528 RHOD_2 Member of the R 74.4 8 0.00017 28.0 4.9 26 171-198 57-82 (101)
67 cd01531 Acr2p Eukaryotic arsen 72.6 12 0.00027 27.6 5.7 22 170-191 60-81 (113)
68 COG1054 Predicted sulfurtransf 70.8 14 0.0003 33.1 6.3 87 101-198 105-196 (308)
69 TIGR03167 tRNA_sel_U_synt tRNA 70.1 9.9 0.00022 34.2 5.4 21 170-190 72-92 (311)
70 KOG1530 Rhodanese-related sulf 68.7 7 0.00015 30.7 3.5 68 117-190 34-106 (136)
71 PRK11784 tRNA 2-selenouridine 66.7 11 0.00025 34.3 5.1 20 171-190 87-106 (345)
72 cd01532 4RHOD_Repeat_1 Member 64.3 11 0.00025 26.8 3.8 28 171-198 49-76 (92)
73 PRK05600 thiamine biosynthesis 63.0 10 0.00022 34.9 4.1 24 173-198 333-356 (370)
74 PRK05569 flavodoxin; Provision 58.1 46 0.001 25.5 6.6 106 123-235 34-140 (141)
75 cd01529 4RHOD_Repeats Member o 58.0 14 0.0003 26.4 3.3 27 170-198 54-80 (96)
76 COG0279 GmhA Phosphoheptose is 57.8 17 0.00036 29.9 4.0 30 156-188 25-54 (176)
77 cd01534 4RHOD_Repeat_3 Member 57.0 14 0.0003 26.4 3.2 25 171-197 55-79 (95)
78 PRK10886 DnaA initiator-associ 56.6 28 0.00061 29.1 5.4 37 156-195 25-61 (196)
79 PF10302 DUF2407: DUF2407 ubiq 56.3 6.2 0.00013 29.3 1.2 11 172-182 85-95 (97)
80 TIGR02981 phageshock_pspE phag 56.0 20 0.00044 26.4 4.0 26 171-198 57-82 (101)
81 PF03668 ATP_bind_2: P-loop AT 54.4 23 0.00049 31.5 4.6 19 174-192 244-262 (284)
82 PF10348 DUF2427: Domain of un 53.8 52 0.0011 24.6 5.9 68 3-75 25-92 (105)
83 PRK10287 thiosulfate:cyanide s 52.8 27 0.00059 25.9 4.2 26 171-198 59-84 (104)
84 PRK07411 hypothetical protein; 52.1 17 0.00036 33.8 3.6 26 171-198 341-366 (390)
85 cd01447 Polysulfide_ST Polysul 51.2 23 0.0005 25.3 3.6 19 169-188 58-76 (103)
86 COG1660 Predicted P-loop-conta 50.0 28 0.00061 30.8 4.4 22 170-191 238-262 (286)
87 cd01527 RHOD_YgaP Member of th 49.9 21 0.00045 25.5 3.2 27 170-198 52-78 (99)
88 PF13580 SIS_2: SIS domain; PD 49.8 33 0.00071 26.6 4.5 34 155-191 18-51 (138)
89 cd01449 TST_Repeat_2 Thiosulfa 49.4 23 0.0005 26.1 3.5 19 170-189 76-94 (118)
90 PF04364 DNA_pol3_chi: DNA pol 48.9 28 0.0006 27.3 3.9 24 158-181 15-38 (137)
91 PRK05416 glmZ(sRNA)-inactivati 48.8 33 0.00071 30.5 4.8 17 175-191 248-264 (288)
92 PF03904 DUF334: Domain of unk 48.2 76 0.0016 27.3 6.6 55 10-80 156-212 (230)
93 TIGR00853 pts-lac PTS system, 47.2 17 0.00037 26.6 2.3 17 173-190 4-20 (95)
94 cd01521 RHOD_PspE2 Member of t 47.0 30 0.00065 25.4 3.7 30 169-198 61-90 (110)
95 cd01525 RHOD_Kc Member of the 46.6 27 0.00059 25.1 3.4 25 172-198 65-89 (105)
96 cd01526 RHOD_ThiF Member of th 46.5 25 0.00054 26.5 3.3 27 170-198 70-96 (122)
97 cd01530 Cdc25 Cdc25 phosphatas 46.4 23 0.0005 26.8 3.1 25 170-196 66-91 (121)
98 PRK05728 DNA polymerase III su 45.2 30 0.00064 27.3 3.6 27 156-182 13-39 (142)
99 PRK06646 DNA polymerase III su 44.4 50 0.0011 26.6 4.8 27 156-182 13-39 (154)
100 smart00450 RHOD Rhodanese Homo 43.9 68 0.0015 21.9 5.1 28 169-198 53-80 (100)
101 COG0794 GutQ Predicted sugar p 42.8 54 0.0012 27.7 4.9 35 156-196 26-60 (202)
102 COG2927 HolC DNA polymerase II 42.3 25 0.00055 28.0 2.7 22 160-181 17-38 (144)
103 PRK13938 phosphoheptose isomer 41.8 70 0.0015 26.7 5.5 38 156-196 29-66 (196)
104 PRK00414 gmhA phosphoheptose i 41.5 49 0.0011 27.4 4.5 33 155-190 27-59 (192)
105 cd01444 GlpE_ST GlpE sulfurtra 40.8 80 0.0017 22.0 5.1 28 169-198 53-80 (96)
106 PF03102 NeuB: NeuB family; I 39.4 27 0.00058 30.3 2.7 34 149-183 119-152 (241)
107 PRK11493 sseA 3-mercaptopyruva 39.1 34 0.00073 30.0 3.3 27 170-198 229-255 (281)
108 PLN02723 3-mercaptopyruvate su 38.0 43 0.00093 30.0 3.9 32 154-188 253-284 (320)
109 TIGR03642 cas_csx13 CRISPR-ass 37.6 84 0.0018 24.4 4.9 58 140-198 54-115 (124)
110 PF06838 Met_gamma_lyase: Meth 37.6 49 0.0011 30.7 4.2 80 124-218 113-192 (403)
111 cd05006 SIS_GmhA Phosphoheptos 36.2 68 0.0015 25.7 4.5 34 154-190 15-48 (177)
112 cd05567 PTS_IIB_mannitol PTS_I 35.7 39 0.00084 24.0 2.7 16 173-188 1-16 (87)
113 PF01964 ThiC: ThiC family; I 35.4 91 0.002 29.2 5.5 112 118-230 87-241 (420)
114 COG2230 Cfa Cyclopropane fatty 35.3 1.4E+02 0.0031 26.5 6.6 80 158-237 155-242 (283)
115 KOG3249 Uncharacterized conser 35.2 1.6E+02 0.0034 24.1 6.2 50 12-71 105-154 (181)
116 PRK13352 thiamine biosynthesis 34.8 1.7E+02 0.0037 27.6 7.2 114 118-231 88-246 (431)
117 PF07136 DUF1385: Protein of u 33.0 2.1E+02 0.0046 24.8 7.1 47 40-101 176-222 (236)
118 TIGR00190 thiC thiamine biosyn 32.7 2E+02 0.0044 27.0 7.3 113 118-230 88-242 (423)
119 PRK15043 transcriptional regul 32.4 1E+02 0.0022 26.8 5.1 69 165-234 154-235 (243)
120 COG2456 Uncharacterized conser 32.2 1.6E+02 0.0034 22.4 5.4 55 30-87 40-94 (121)
121 PF12921 ATP13: Mitochondrial 31.7 1.3E+02 0.0027 23.2 5.1 31 205-236 73-103 (126)
122 PF02673 BacA: Bacitracin resi 31.4 53 0.0012 28.7 3.3 26 180-208 159-184 (259)
123 PRK15087 hemolysin; Provisiona 30.5 1.1E+02 0.0024 25.9 5.0 51 30-80 52-104 (219)
124 COG3564 Uncharacterized protei 30.4 69 0.0015 23.8 3.2 26 158-183 10-35 (116)
125 PRK00162 glpE thiosulfate sulf 29.6 1.5E+02 0.0033 21.3 5.2 26 170-197 56-81 (108)
126 PRK02947 hypothetical protein; 29.1 98 0.0021 26.6 4.6 35 154-191 22-56 (246)
127 PF14532 Sigma54_activ_2: Sigm 28.5 1.4E+02 0.003 22.7 5.0 76 156-233 5-95 (138)
128 PRK09590 celB cellobiose phosp 28.3 50 0.0011 24.7 2.3 14 173-186 2-15 (104)
129 PRK06036 translation initiatio 27.9 57 0.0012 29.8 3.0 19 169-187 145-163 (339)
130 TIGR00753 undec_PP_bacA undeca 27.3 62 0.0013 28.3 3.0 25 181-208 160-184 (255)
131 cd01535 4RHOD_Repeat_4 Member 27.2 1.6E+02 0.0034 23.1 5.1 27 170-198 47-73 (145)
132 TIGR01753 flav_short flavodoxi 26.7 2.7E+02 0.0059 20.7 8.1 89 139-234 47-139 (140)
133 PRK05568 flavodoxin; Provision 26.7 2.8E+02 0.0061 20.9 7.3 108 120-235 30-140 (142)
134 COG3402 Uncharacterized conser 26.5 1.3E+02 0.0029 24.3 4.5 42 7-49 19-64 (161)
135 PRK00281 undecaprenyl pyrophos 26.4 67 0.0014 28.3 3.0 25 181-208 164-188 (268)
136 PRK12554 undecaprenyl pyrophos 26.4 65 0.0014 28.5 3.0 25 181-208 166-190 (276)
137 cd01524 RHOD_Pyr_redox Member 26.2 2E+02 0.0044 19.9 5.1 27 169-197 48-74 (90)
138 PRK09629 bifunctional thiosulf 26.2 1.1E+02 0.0023 30.3 4.7 32 154-189 207-239 (610)
139 COG1272 Predicted membrane pro 26.2 1.3E+02 0.0029 25.8 4.8 60 5-64 30-93 (226)
140 PF02302 PTS_IIB: PTS system, 26.2 43 0.00094 23.4 1.6 16 174-189 1-16 (90)
141 PRK13825 conjugal transfer pro 25.5 1.2E+02 0.0027 28.0 4.8 20 31-50 34-57 (388)
142 cd01317 DHOase_IIa Dihydroorot 25.4 3.3E+02 0.0071 24.6 7.6 18 163-180 124-141 (374)
143 PRK01269 tRNA s(4)U8 sulfurtra 25.2 1E+02 0.0022 29.4 4.2 27 170-198 447-473 (482)
144 TIGR01245 trpD anthranilate ph 24.6 1.8E+02 0.004 26.2 5.6 58 170-230 97-158 (330)
145 PF10003 DUF2244: Integral mem 24.4 3.1E+02 0.0068 21.3 6.3 35 7-42 14-48 (140)
146 PRK11493 sseA 3-mercaptopyruva 23.5 1.4E+02 0.003 26.0 4.6 20 169-189 84-103 (281)
147 COG0084 TatD Mg-dependent DNas 23.4 1.1E+02 0.0025 26.6 3.9 57 156-212 109-170 (256)
148 PRK13936 phosphoheptose isomer 23.0 2.1E+02 0.0047 23.5 5.4 34 156-192 27-60 (197)
149 cd00158 RHOD Rhodanese Homolog 22.6 1.3E+02 0.0029 20.1 3.5 26 170-197 48-73 (89)
150 COG3673 Uncharacterized conser 22.5 4.3E+02 0.0092 24.4 7.3 78 156-236 105-191 (423)
151 PF02571 CbiJ: Precorrin-6x re 22.2 1.4E+02 0.0031 25.8 4.3 72 104-177 46-135 (249)
152 PRK05772 translation initiatio 22.2 1.6E+02 0.0034 27.2 4.7 15 169-183 164-178 (363)
153 cd05565 PTS_IIB_lactose PTS_II 21.8 66 0.0014 23.8 1.8 19 174-194 2-20 (99)
154 KOG4388 Hormone-sensitive lipa 21.7 1.7E+02 0.0038 29.1 5.0 63 119-183 335-406 (880)
155 TIGR02691 arsC_pI258_fam arsen 21.2 3.2E+02 0.007 20.8 5.7 50 120-169 69-126 (129)
156 COG2089 SpsE Sialic acid synth 20.5 1E+02 0.0022 28.2 3.0 34 149-183 153-186 (347)
157 PRK11449 putative deoxyribonuc 20.5 2E+02 0.0042 24.9 4.8 56 157-212 112-172 (258)
158 PF12091 DUF3567: Protein of u 20.4 1.3E+02 0.0028 21.8 3.0 26 151-178 60-85 (85)
159 TIGR03569 NeuB_NnaB N-acetylne 20.3 1.2E+02 0.0026 27.6 3.5 31 152-182 142-173 (329)
160 PF09707 Cas_Cas2CT1978: CRISP 20.2 49 0.0011 24.0 0.8 17 97-113 20-36 (86)
161 PRK15358 pathogenicity island 20.1 31 0.00067 28.9 -0.3 30 23-52 64-93 (239)
No 1
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-51 Score=390.23 Aligned_cols=230 Identities=28% Similarity=0.401 Sum_probs=204.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCCCCCCchHHHHHHHhhhhHHH
Q 026154 3 VGISFLISLKATVHFIVFVFLRSLGFTLLSLPFLYASLVSLLIALASHPSINLPMLLGKKSDGSFPIWSIILFSPYIYFV 82 (242)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~~~l~~P~~~~~ 82 (242)
|.++..++++|++++++++.+.+ ++++++++|+|+++++||+||. ++.|++|||++||++|++++|+|+||++++
T Consensus 5 ~~~~~~y~~ga~~~~~~~~~~~~---~~~~~~~~w~~~~~~~v~~~y~--~~~~~~f~k~~~g~~~~~~~~l~~P~l~~~ 79 (547)
T PRK12361 5 IHIKYYYLAGALLLLYLAVTGPS---ILLTFLFAWISLSLFLVGSAYW--FNLASIFRKRQDGTIPWYIRWVFIPFLLGT 79 (547)
T ss_pred hHHHHHHHHHHHHHHHHHHHccH---HHHHHHHHHHHHHHHHHHHHHH--hcccHhhCCCCCCcchHHHHHHHHHHHHHH
Confidence 67899999998666663333333 3678899999999999999995 899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCc---ccCCCceEEEEEcCCCCCCChh
Q 026154 83 RIFSVLRRLNSGEEPYSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKL---REFEGHSYLCVPTWDTRSPQPG 156 (242)
Q Consensus 83 ~~~~~~~~~~~~~p~~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~---~~~~g~~y~~iPi~D~~~p~~~ 156 (242)
|+||.|.|..+++|++++|.|+||+|+.+...+ .| +.||++||||++|.+.. ....+++|+++|+.|+..|+.+
T Consensus 80 ~~~~~~~r~~~~~~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~~~~~~~~i~yl~iPi~D~~~p~~~ 159 (547)
T PRK12361 80 RLYNAWARKRDSVPAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLDWSLTEEDIDYLNIPILDHSVPTLA 159 (547)
T ss_pred HHHHHHHhcccCCCcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEcccccccccccccccCceEEEeecCCCCCCcHH
Confidence 999988777778899999999999999998776 34 47999999999987652 2346789999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 026154 157 EIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 157 ~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~ 236 (242)
++++++++|++.+++|++|||||++|+|||+++++||||.++..++++||++.||++||.+.||++|+++|++|+++..-
T Consensus 160 ~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~~~~~ 239 (547)
T PRK12361 160 QLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLEQGKL 239 (547)
T ss_pred HHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999987655899999999999999999999999999999887554
Q ss_pred c
Q 026154 237 T 237 (242)
Q Consensus 237 ~ 237 (242)
.
T Consensus 240 ~ 240 (547)
T PRK12361 240 N 240 (547)
T ss_pred c
Confidence 3
No 2
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.97 E-value=4.6e-31 Score=208.73 Aligned_cols=134 Identities=28% Similarity=0.411 Sum_probs=119.5
Q ss_pred CceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCC-hhHHHHHHHHHHHHhhCCC
Q 026154 98 YSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQ-PGEIESAVKWGSRKRAQNR 173 (242)
Q Consensus 98 ~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~-~~~l~~av~~i~~~~~~~~ 173 (242)
+++|.|+||+|+.|...+ .+ +.||++||||+.+.+. ....+++|+++|+.|...++ .+.+++++++|++..++|+
T Consensus 1 ~~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~-~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (138)
T smart00195 1 PSEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPN-LNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGG 79 (138)
T ss_pred CcEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCC-CCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCC
Confidence 579999999999998775 34 4799999999987664 34678999999999954444 4789999999999999999
Q ss_pred cEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 026154 174 PVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKH 233 (242)
Q Consensus 174 ~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~ 233 (242)
+|+|||.+|.|||+++++||||+..+ +++++|++++|++||.+.||++|+++|++|++.
T Consensus 80 ~VlVHC~~G~~RS~~v~~~yl~~~~~-~~~~~A~~~v~~~R~~~~p~~~~~~qL~~~e~~ 138 (138)
T smart00195 80 KVLVHCQAGVSRSATLIIAYLMKYRN-LSLNDAYDFVKDRRPIISPNFGFLRQLIEYERK 138 (138)
T ss_pred eEEEECCCCCchHHHHHHHHHHHHhC-CCHHHHHHHHHHHCCccCCCHhHHHHHHHHhhC
Confidence 99999999999999999999999886 799999999999999999999999999999863
No 3
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=9.6e-30 Score=200.46 Aligned_cols=162 Identities=24% Similarity=0.376 Sum_probs=143.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHhhcCCCCCceecCCeEEcCCcCcccc---C-CCCCcEEEEcCCCCCCcc-----cCCCce
Q 026154 71 SIILFSPYIYFVRIFSVLRRLNSGEEPYSEVCEGLYVGGWPNSMTT---L-PPGNPAIIDCTCEFPKLR-----EFEGHS 141 (242)
Q Consensus 71 ~~~l~~P~~~~~~~~~~~~~~~~~~p~~~~I~~~L~lG~~p~~~~~---L-~~gi~~Vi~l~~e~~~~~-----~~~g~~ 141 (242)
+|++|+|.++ ||.++...+...|+ ++.+.+.+|..|..+.. + ++|+..|+.++++++... ...|++
T Consensus 3 ar~~fyptll----ynvv~~k~s~~~wy-~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE 77 (183)
T KOG1719|consen 3 ARVLFYPTLL----YNVVREKASAFRWY-RIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIE 77 (183)
T ss_pred ceeeecHHHH----HHHHHHHHhhhcee-eecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccce
Confidence 5789999997 89988776666666 89999999998866542 3 479999999998776542 356899
Q ss_pred EEEEEcCC-CCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCC
Q 026154 142 YLCVPTWD-TRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMN 220 (242)
Q Consensus 142 y~~iPi~D-~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n 220 (242)
++.+|+.| ...|+.+.+.++++||++....|+.|||||++|++||+|+++||||.... +++++|++++|++||.+.+.
T Consensus 78 ~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~-wtpe~A~~~vr~iRp~VlL~ 156 (183)
T KOG1719|consen 78 FLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKN-WTPEAAVEHVRKIRPRVLLR 156 (183)
T ss_pred eEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhhhhcC-CCHHHHHHHHHhcCcceeec
Confidence 99999999 57788999999999999999999999999999999999999999999986 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 026154 221 ALQRKALEEWSKHRLSTA 238 (242)
Q Consensus 221 ~~~~~~L~~~~~~~~~~~ 238 (242)
++|++.+.+|++....+.
T Consensus 157 ~~Qw~~l~ef~~~~~~~~ 174 (183)
T KOG1719|consen 157 PAQWDVLKEFYKQIVANA 174 (183)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999998877653
No 4
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.96 E-value=9.3e-29 Score=195.02 Aligned_cols=133 Identities=31% Similarity=0.439 Sum_probs=119.0
Q ss_pred CceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCC-cccCCCceEEEEEcCCCCCCCh-hHHHHHHHHHHHHhhCC
Q 026154 98 YSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPK-LREFEGHSYLCVPTWDTRSPQP-GEIESAVKWGSRKRAQN 172 (242)
Q Consensus 98 ~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~-~~~~~g~~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~~~ 172 (242)
+++|.|+||+|+.|+..+ .+ +.||++||||+.+.+. .....+++|.++|+.|...++. ..++.++++|++..+++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~~~ 81 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDAREKG 81 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHHHhcC
Confidence 579999999999998875 45 4799999999987664 2345789999999999875555 67999999999999999
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHH
Q 026154 173 RPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWS 231 (242)
Q Consensus 173 ~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~ 231 (242)
++|+|||.+|.|||++++++|+|..++ +++++|++++|++||.+.||++|++||.+|+
T Consensus 82 ~~vlVHC~~G~~Rs~~~~~~~l~~~~~-~~~~~a~~~vr~~r~~~~~~~~~~~~l~~~~ 139 (139)
T cd00127 82 GKVLVHCLAGVSRSATLVIAYLMKTLG-LSLREAYEFVKSRRPIISPNAGFMRQLKEYE 139 (139)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHHcC-CCHHHHHHHHHHHCCccCCCHHHHHHHHHhC
Confidence 999999999999999999999999886 8999999999999999999999999999985
No 5
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.96 E-value=1.1e-28 Score=197.08 Aligned_cols=142 Identities=23% Similarity=0.284 Sum_probs=127.3
Q ss_pred CCCCceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh
Q 026154 95 EEPYSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQP-GEIESAVKWGSRKRA 170 (242)
Q Consensus 95 ~p~~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~ 170 (242)
.+.+++|+++||+++-..+.+ .+ +++|++|||.+.|.|.. .-.+++|..+|+.|.....+ ++|+.+.+.|+....
T Consensus 14 ~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~-~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~ 92 (198)
T KOG1718|consen 14 IGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNT-SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIM 92 (198)
T ss_pred ccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCc-cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHh
Confidence 456789999999995444444 34 47999999999999974 55789999999999987777 789999999999999
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhccc
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLSTA 238 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~~~ 238 (242)
+||++||||.+|+|||+++|.||||++.. +++.||+.++|++||.++||-+|++||..||+++.+..
T Consensus 93 ~gG~TLvHC~AGVSRSAsLClAYLmK~~~-msLreAy~~vKa~RpiIRPN~GFw~QLi~YE~qL~g~~ 159 (198)
T KOG1718|consen 93 RGGKTLVHCVAGVSRSASLCLAYLMKYHC-MSLREAYHWVKARRPIIRPNVGFWRQLIDYEQQLFGNA 159 (198)
T ss_pred cCCcEEEEEccccchhHHHHHHHHHHHcc-chHHHHHHHHHhhCceeCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999985 99999999999999999999999999999999998754
No 6
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.95 E-value=5.7e-28 Score=189.62 Aligned_cols=128 Identities=31% Similarity=0.439 Sum_probs=112.5
Q ss_pred eEEcCCcCccc-cC-CCCCcEEEEcCCCCCCc--ccCCCceEEEEEcCCC-CCCChhHHHHHHHHHHHHhhCCCcEEEEc
Q 026154 105 LYVGGWPNSMT-TL-PPGNPAIIDCTCEFPKL--REFEGHSYLCVPTWDT-RSPQPGEIESAVKWGSRKRAQNRPVFVHC 179 (242)
Q Consensus 105 L~lG~~p~~~~-~L-~~gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~-~~p~~~~l~~av~~i~~~~~~~~~VlVHC 179 (242)
||+|+.+.+.. .+ +.||++|||++.+.+.+ ....++.|+++|+.|. ..+..+.+++++++|++..++|++|||||
T Consensus 1 lylG~~~~a~~~~l~~~~I~~Vin~~~~~~~~~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC 80 (133)
T PF00782_consen 1 LYLGSYPAASIAFLKNLGITHVINLQEECPNPYFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAISEGGKVLVHC 80 (133)
T ss_dssp EEEEEHHHHCHHHHHHTTEEEEEECSSSSSTSHHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CEEeCHHHHhHHHHHHCCCCEEEEccCCCcCchhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhcccceeEEEe
Confidence 79999887762 33 47999999999887652 2457889999999994 44445889999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q 026154 180 AYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKH 233 (242)
Q Consensus 180 ~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~ 233 (242)
.+|+|||+++++||||..++ +++++|++++|++||.+.||+.|+++|.+|+++
T Consensus 81 ~~G~~RS~~v~~ayLm~~~~-~~~~~A~~~v~~~rp~~~~~~~~~~~L~~~e~~ 133 (133)
T PF00782_consen 81 KAGLSRSGAVAAAYLMKKNG-MSLEEAIEYVRSRRPQINPNPSFIRQLYEYEKK 133 (133)
T ss_dssp SSSSSHHHHHHHHHHHHHHT-SSHHHHHHHHHHHSTTSTHHHHHHHHHHHHHHH
T ss_pred CCCcccchHHHHHHHHHHcC-CCHHHHHHHHHHHCCCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999886 799999999999999999999999999999874
No 7
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=3e-26 Score=194.91 Aligned_cols=142 Identities=25% Similarity=0.286 Sum_probs=127.2
Q ss_pred CCceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCcccC-CCceEEEEEcCCCCCCChhH-HHHHHHHHHHHhhC
Q 026154 97 PYSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKLREF-EGHSYLCVPTWDTRSPQPGE-IESAVKWGSRKRAQ 171 (242)
Q Consensus 97 ~~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~~~~-~g~~y~~iPi~D~~~p~~~~-l~~av~~i~~~~~~ 171 (242)
-+.+|.|+||+|+..++.+ .| +.||++|||+|...|...+. ..+.|.++|+.|+...+..+ |++|+.||++++.+
T Consensus 171 FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~fe~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeArsk 250 (343)
T KOG1717|consen 171 FPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNNFENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEARSK 250 (343)
T ss_pred cchhhccchhcccccccccHHHHHhcCceEEEecCCCCcchhhcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHhhcc
Confidence 3559999999999988776 35 46999999999998887544 45899999999999888855 89999999999999
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcccc
Q 026154 172 NRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLSTAR 239 (242)
Q Consensus 172 ~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~~~~ 239 (242)
+..|||||-+|+|||+|+++||||++.. .++++|+++|+.++..|.||.+|+.||..|++.+--+++
T Consensus 251 ~cgvLVHClaGISRSvTvtvaYLMqkl~-lslndAyd~Vk~kksnisPNFnFMgQLldfertlgl~s~ 317 (343)
T KOG1717|consen 251 NCGVLVHCLAGISRSVTVTVAYLMQKLN-LSLNDAYDFVKHKKSNISPNFNFMGQLLDFERTLGLESR 317 (343)
T ss_pred CCcEEEeeeccccchhHHHHHHHHHHhc-cchhhHHHHHHHhccCCCCCcchhHHHHHHHHHhhccCc
Confidence 9999999999999999999999999986 799999999999999999999999999999998765544
No 8
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.94 E-value=1.1e-25 Score=199.02 Aligned_cols=141 Identities=26% Similarity=0.371 Sum_probs=127.2
Q ss_pred CCCceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCcc--cCCCceEEEEEcCCCCCCCh-hHHHHHHHHHHHHh
Q 026154 96 EPYSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKLR--EFEGHSYLCVPTWDTRSPQP-GEIESAVKWGSRKR 169 (242)
Q Consensus 96 p~~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~~--~~~g~~y~~iPi~D~~~p~~-~~l~~av~~i~~~~ 169 (242)
..+++|.|++|+|+...+.+ .+ +.||++|+|++.+.+... ...+++|+++|+.|...+++ .+++++++||++++
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~a~ 152 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPRFLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEKAR 152 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccccccccCceEEeccccCCccccHHHHHHHHHHHHHHHH
Confidence 46789999999999986665 34 469999999999887742 33489999999999988888 67999999999999
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhcc
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLST 237 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~~ 237 (242)
+++++|||||.+|+|||+++++||||++.+ +++++|+++|+.+||.+.||.+|+.||.+|++.+..+
T Consensus 153 ~~~~~vlVHC~~GvSRSat~viAYlM~~~~-~~l~~A~~~vk~~R~~i~PN~gf~~QL~~~e~~l~~~ 219 (285)
T KOG1716|consen 153 EKGGKVLVHCQAGVSRSATLVIAYLMKYEG-LSLEDAYELVKSRRPIISPNFGFLRQLLEFEKRLSKK 219 (285)
T ss_pred hCCCeEEEEcCCccchhHHHHHHHHHHHcC-CCHHHHHHHHHHhCCccCCCHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999997 8999999999999999999999999999999988764
No 9
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.92 E-value=2.9e-24 Score=175.71 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=119.3
Q ss_pred CCCCCceecCCeEEcCCcCccc------cC-CCCCcEEEEcCCCCCCc--ccCCCceEEEEEcCCCCCCChhHHHHHHHH
Q 026154 94 GEEPYSEVCEGLYVGGWPNSMT------TL-PPGNPAIIDCTCEFPKL--REFEGHSYLCVPTWDTRSPQPGEIESAVKW 164 (242)
Q Consensus 94 ~~p~~~~I~~~L~lG~~p~~~~------~L-~~gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~~~p~~~~l~~av~~ 164 (242)
+...++.+...+..-..|.... .+ +.||++|+|++++..+. ....|++|+++|+.|..+|+.+.+.+++++
T Consensus 7 ~~~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~ 86 (166)
T PTZ00242 7 KDRQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYDAELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRL 86 (166)
T ss_pred CCcceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHH
Confidence 3456778888998888887643 23 46999999998765432 234689999999999999999999999999
Q ss_pred HHHHhhC----CCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 026154 165 GSRKRAQ----NRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 165 i~~~~~~----~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~ 236 (242)
+++.++. |++|+|||.+|+||||+++++|||+.++ ++++||++.+|++||... ++.|+++|.+|.+..-.
T Consensus 87 i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~-~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~~~~~~ 160 (166)
T PTZ00242 87 LDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGG-MEPLDAVGFVREKRKGAI-NQTQLQFLKKYKPRKKA 160 (166)
T ss_pred HHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCC-CCHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHhcc
Confidence 9987754 8999999999999999999999999986 799999999999999875 89999999999876543
No 10
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.90 E-value=7.8e-23 Score=173.94 Aligned_cols=114 Identities=20% Similarity=0.196 Sum_probs=102.8
Q ss_pred CCCcEEEEcCCCCCCc--ccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 026154 119 PGNPAIIDCTCEFPKL--REFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA 196 (242)
Q Consensus 119 ~gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~ 196 (242)
.||++||+++++..+. ....|++++++|+.|...|+.+.++++++++++..++|++|+|||.+|+|||++++++|||.
T Consensus 115 ~gV~~lVrlcE~~Yd~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~ 194 (241)
T PTZ00393 115 YNVTDLVRTCERTYNDGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE 194 (241)
T ss_pred cCCCEEEECCCCCCCHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6999999998765433 24579999999999999999999999999999998899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 026154 197 LSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRL 235 (242)
Q Consensus 197 ~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~ 235 (242)
.+ ++++||+++||++||.+ +|..|+++|++|+++..
T Consensus 195 ~G--mspeeAI~~VR~~RPgA-In~~Q~~fL~~y~~~~~ 230 (241)
T PTZ00393 195 FG--MDPIDAIVFIRDRRKGA-INKRQLQFLKAYKKKKK 230 (241)
T ss_pred cC--CCHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcc
Confidence 65 69999999999999988 48999999999998753
No 11
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.84 E-value=4.9e-20 Score=152.45 Aligned_cols=112 Identities=18% Similarity=0.126 Sum_probs=103.4
Q ss_pred CCCcEEEEcCCCCCCc--ccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 026154 119 PGNPAIIDCTCEFPKL--REFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA 196 (242)
Q Consensus 119 ~gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~ 196 (242)
+++++++.+++..++. ....|+..+++|+.|...|+++.+.++++.++...+ +++|.|||++|.|||+++++||||+
T Consensus 93 ~~v~s~vrln~~~yd~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy 171 (225)
T KOG1720|consen 93 NNVTSIVRLNKRLYDAKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMY 171 (225)
T ss_pred cccceEEEcCCCCCChHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHH
Confidence 5889999999876543 456789999999999999999999999999999988 9999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 026154 197 LSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSK 232 (242)
Q Consensus 197 ~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~ 232 (242)
..+ +++.||++.+|..||+.+.+++|...+.++..
T Consensus 172 ~~g-~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 172 EYG-MTAGEAIAWLRICRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred HhC-CCHHHHHHHHHhcCCccccCHHHHHHHHHHHH
Confidence 986 89999999999999999999999999998876
No 12
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.80 E-value=8.7e-19 Score=145.18 Aligned_cols=100 Identities=26% Similarity=0.333 Sum_probs=87.0
Q ss_pred ccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 026154 135 REFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRR 214 (242)
Q Consensus 135 ~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~R 214 (242)
....+..+.++|+.|+..|+.+++++++++|++..++|++|+|||.+|+|||||+++||||++++..+.++++..++.+|
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 45678899999999999999999999999999999999999999999999999999999999977789999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 026154 215 PNIQMNALQRKALEEWSKHR 234 (242)
Q Consensus 215 p~i~~n~~~~~~L~~~~~~~ 234 (242)
|.......|.....+.+..+
T Consensus 148 ~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 148 PGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred CcccccHHHHHHHHHHHHHH
Confidence 87555666655555544433
No 13
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.59 E-value=2.5e-15 Score=122.65 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=83.4
Q ss_pred CCCCceecCCeEEcCCcCccc--cCC-CCCcEEEEcCCCCCCc-----ccCCCceEEEEEcCCCCC----CChhHHHHHH
Q 026154 95 EEPYSEVCEGLYVGGWPNSMT--TLP-PGNPAIIDCTCEFPKL-----REFEGHSYLCVPTWDTRS----PQPGEIESAV 162 (242)
Q Consensus 95 ~p~~~~I~~~L~lG~~p~~~~--~L~-~gi~~Vi~l~~e~~~~-----~~~~g~~y~~iPi~D~~~----p~~~~l~~av 162 (242)
..++..|.++||-|+.|...+ .|+ .|+++||+|+.|.+.. ....+++++++++.+... .+.+.+.+++
T Consensus 4 P~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~~aL 83 (164)
T PF03162_consen 4 PLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVAEAL 83 (164)
T ss_dssp -TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHHHHH
T ss_pred CccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHHHHH
Confidence 457889999999999998765 354 5999999999875433 246899999999977554 3456788888
Q ss_pred HHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhccc
Q 026154 163 KWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRLSTA 238 (242)
Q Consensus 163 ~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~~~ 238 (242)
+.+.+.. +.||||||..|..|||+|++||- +.++ ++..++++..+.-- +...+..-.++++.|...+....
T Consensus 84 ~~ild~~--n~PvLiHC~~G~~rTG~vvg~lR-k~Q~-W~~~~i~~Ey~~f~-~~~~~~~~~~fIe~f~~~~~~~~ 154 (164)
T PF03162_consen 84 EIILDPR--NYPVLIHCNHGKDRTGLVVGCLR-KLQG-WSLSSIFDEYRRFA-GPKIRYLDEQFIELFDVELVVPP 154 (164)
T ss_dssp HHHH-GG--G-SEEEE-SSSSSHHHHHHHHHH-HHTT-B-HHHHHHHHHHHH-GGG--HHHHHHHHT---------
T ss_pred HHHhCCC--CCCEEEEeCCCCcchhhHHHHHH-HHcC-CCHHHHHHHHHHhc-CCCCcHHHHHHHHhcCcceeccc
Confidence 8776554 47999999999999999999999 4554 89999999888632 22556777888888876665543
No 14
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.58 E-value=3.2e-15 Score=120.81 Aligned_cols=105 Identities=21% Similarity=0.200 Sum_probs=69.5
Q ss_pred CCeEEcCCcCcc------c------cCC-CCCcEEEEcCCCCCCc----------ccCCCceEEEEEcCCCCCCChhHHH
Q 026154 103 EGLYVGGWPNSM------T------TLP-PGNPAIIDCTCEFPKL----------REFEGHSYLCVPTWDTRSPQPGEIE 159 (242)
Q Consensus 103 ~~L~lG~~p~~~------~------~L~-~gi~~Vi~l~~e~~~~----------~~~~g~~y~~iPi~D~~~p~~~~l~ 159 (242)
..|.+...|... + .++ .|++.|+.++++.+-. ....|+.++++||.|...|+.+...
T Consensus 41 ~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~ 120 (168)
T PF05706_consen 41 GFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAW 120 (168)
T ss_dssp SEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHH
T ss_pred ceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHH
Confidence 467788888742 1 233 6999999998643211 2468999999999999999988777
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHH
Q 026154 160 SAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAE 207 (242)
Q Consensus 160 ~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~ 207 (242)
+.++.+...+++|++|+|||..|.||||++++++|+..+..+++++|+
T Consensus 121 ~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 121 QILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp HHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 888889999999999999999999999999999999988778999986
No 15
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.51 E-value=1.3e-13 Score=102.57 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh---CCCcEEEEcCCCCChHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKWGSRKRA---QNRPVFVHCAYGHGRSVAVACALLVALS-----IVEDWREAEKLIK 211 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~---~~~~VlVHC~~G~~RS~~vv~ayLm~~~-----~~~~~~eA~~~vr 211 (242)
.|+..++.|...|+. +.+.++++.+++..+ .++||+|||.+|.||||+++++|++..+ ...++.++++.+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00404 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456667778877766 778888888887764 3689999999999999999999997542 2468899999999
Q ss_pred hhCCCCCCCHHHHHHHHHH
Q 026154 212 KRRPNIQMNALQRKALEEW 230 (242)
Q Consensus 212 ~~Rp~i~~n~~~~~~L~~~ 230 (242)
..||+...+..|+.++.+.
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00404 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999887653
No 16
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.51 E-value=1.3e-13 Score=102.57 Aligned_cols=90 Identities=21% Similarity=0.200 Sum_probs=74.5
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh---CCCcEEEEcCCCCChHHHHHHHHHHHcC-----CCCCHHHHHHHHH
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKWGSRKRA---QNRPVFVHCAYGHGRSVAVACALLVALS-----IVEDWREAEKLIK 211 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~---~~~~VlVHC~~G~~RS~~vv~ayLm~~~-----~~~~~~eA~~~vr 211 (242)
.|+..++.|...|+. +.+.++++.+++..+ .++||+|||.+|.||||+++++|++..+ ...++.++++.+|
T Consensus 4 ~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 83 (105)
T smart00012 4 HYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKELR 83 (105)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456667778877766 778888888887764 3689999999999999999999997542 2468899999999
Q ss_pred hhCCCCCCCHHHHHHHHHH
Q 026154 212 KRRPNIQMNALQRKALEEW 230 (242)
Q Consensus 212 ~~Rp~i~~n~~~~~~L~~~ 230 (242)
..||+...+..|+.++.+.
T Consensus 84 ~~r~~~~~~~~q~~~~~~~ 102 (105)
T smart00012 84 KQRPGMVQTFEQYLFLYRA 102 (105)
T ss_pred hhhhhhCCcHHHHHHHHHH
Confidence 9999999999999887653
No 17
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.50 E-value=3.6e-13 Score=106.55 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=85.5
Q ss_pred CceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCcc-----------cCCCceEEEEEcCCCCCCChhHHHHHHH
Q 026154 98 YSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKLR-----------EFEGHSYLCVPTWDTRSPQPGEIESAVK 163 (242)
Q Consensus 98 ~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~~-----------~~~g~~y~~iPi~D~~~p~~~~l~~av~ 163 (242)
+.+|+|++|+++.++..+ .| +.|+++|||+..+.+... ...|++|+++|+.... ++.+++..+.+
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-~~~~~v~~f~~ 80 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-ITPDDVETFRA 80 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-CCHHHHHHHHH
Confidence 358999999999998776 34 469999999986433211 1368999999987643 56666777666
Q ss_pred HHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 026154 164 WGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRP 215 (242)
Q Consensus 164 ~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 215 (242)
.++ ...+|||+||++|. ||+++.+.++...+ .+.+++++..+...-
T Consensus 81 ~~~---~~~~pvL~HC~sG~-Rt~~l~al~~~~~g--~~~~~i~~~~~~~G~ 126 (135)
T TIGR01244 81 AIG---AAEGPVLAYCRSGT-RSSLLWGFRQAAEG--VPVEEIVRRAQAAGY 126 (135)
T ss_pred HHH---hCCCCEEEEcCCCh-HHHHHHHHHHHHcC--CCHHHHHHHHHHcCC
Confidence 665 33589999999999 99999988887765 489999999987653
No 18
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-12 Score=97.88 Aligned_cols=135 Identities=20% Similarity=0.248 Sum_probs=101.5
Q ss_pred CCCCceecC---CeEEcCCcCcc------ccC-CCCCcEEEEcCCCCCCc--ccCCCceEEEEEcCCCCCCChhHHHHHH
Q 026154 95 EEPYSEVCE---GLYVGGWPNSM------TTL-PPGNPAIIDCTCEFPKL--REFEGHSYLCVPTWDTRSPQPGEIESAV 162 (242)
Q Consensus 95 ~p~~~~I~~---~L~lG~~p~~~------~~L-~~gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~~~p~~~~l~~av 162 (242)
.|.+.+|.= ...+-..|... ++| +.|+++|+.+|+...+. .+..|+..+.+|..|..+|..+-++.-.
T Consensus 6 rPAPveIsy~~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~dg~ppp~qvv~~w~ 85 (173)
T KOG2836|consen 6 RPAPVEISYKNMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFDDGAPPPNQVVDDWL 85 (173)
T ss_pred CCCCeeeeccceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccccCCchhhhcCceEeecccccCCCCchHHHHHHH
Confidence 566677742 23444455443 245 47999999999865544 4568999999999888777665455544
Q ss_pred HHHHHHh--hCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 026154 163 KWGSRKR--AQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSK 232 (242)
Q Consensus 163 ~~i~~~~--~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~ 232 (242)
+.+.... +.|..|-|||.+|.||.+.+++.-|+..|. ..++|+++||++|.+ .+|..|..+|+.|.-
T Consensus 86 ~l~~~~f~e~p~~cvavhcvaglgrapvlvalalie~gm--kyedave~ir~krrg-a~n~kql~~lekyrp 154 (173)
T KOG2836|consen 86 SLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALIEAGM--KYEDAVEMIRQKRRG-AINSKQLLYLEKYRP 154 (173)
T ss_pred HHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHHHccc--cHHHHHHHHHHHhhc-cccHHHHHHHHHhCc
Confidence 4433332 346789999999999999999999999885 799999999999965 679999999998853
No 19
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.31 E-value=3.1e-12 Score=97.65 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=57.2
Q ss_pred CceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCc-----------ccCCCceEEEEEcCCCCCCChhHHHHHHH
Q 026154 98 YSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKL-----------REFEGHSYLCVPTWDTRSPQPGEIESAVK 163 (242)
Q Consensus 98 ~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~-----------~~~~g~~y~~iPi~D~~~p~~~~l~~av~ 163 (242)
+.+|+|++++++.|+..+ .+ +.|+++|||+..+.+.+ ....|+.|+++|+.. ..++.++++++.+
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~-~~~~~~~v~~f~~ 80 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG-GAITEEDVEAFAD 80 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T-TT--HHHHHHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC-CCCCHHHHHHHHH
Confidence 468999999999997766 34 47999999998543321 236799999999954 5577788888777
Q ss_pred HHHHHhhCCCcEEEEcCCCCChHHHHHHH
Q 026154 164 WGSRKRAQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 164 ~i~~~~~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
.+++ .++|||+||+.|. ||+++.+.
T Consensus 81 ~l~~---~~~Pvl~hC~sG~-Ra~~l~~l 105 (110)
T PF04273_consen 81 ALES---LPKPVLAHCRSGT-RASALWAL 105 (110)
T ss_dssp HHHT---TTTSEEEE-SCSH-HHHHHHHH
T ss_pred HHHh---CCCCEEEECCCCh-hHHHHHHH
Confidence 7665 3689999999999 99876553
No 20
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.30 E-value=1.5e-11 Score=106.92 Aligned_cols=88 Identities=23% Similarity=0.271 Sum_probs=71.5
Q ss_pred EEEEEcCCCCCC-ChhHHHHHHHHHHHHhhC-CCcEEEEcCCCCChHHHHHHHHHHH----cCCCCCHHHHHHHHHhhCC
Q 026154 142 YLCVPTWDTRSP-QPGEIESAVKWGSRKRAQ-NRPVFVHCAYGHGRSVAVACALLVA----LSIVEDWREAEKLIKKRRP 215 (242)
Q Consensus 142 y~~iPi~D~~~p-~~~~l~~av~~i~~~~~~-~~~VlVHC~~G~~RS~~vv~ayLm~----~~~~~~~~eA~~~vr~~Rp 215 (242)
|+...+.|.+.| +.+.+.++++.+++.... ++||+|||.+|.||||++++++++. .+...++.++++.+|++||
T Consensus 161 ~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~ 240 (258)
T smart00194 161 YHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRP 240 (258)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccc
Confidence 333345588777 447788888877776553 6899999999999999999998753 3445799999999999999
Q ss_pred CCCCCHHHHHHHHH
Q 026154 216 NIQMNALQRKALEE 229 (242)
Q Consensus 216 ~i~~n~~~~~~L~~ 229 (242)
++..+..|+.++.+
T Consensus 241 ~~v~~~~Qy~f~~~ 254 (258)
T smart00194 241 GMVQTEEQYIFLYR 254 (258)
T ss_pred cccCCHHHHHHHHH
Confidence 99999999999874
No 21
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.29 E-value=2.2e-11 Score=113.38 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=76.9
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHHHHHHhhCC---------CcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHH
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKWGSRKRAQN---------RPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLI 210 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~~~---------~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~v 210 (242)
+|+...|+|++.|+. +.+.++++.+++..+.+ ++.+|||.+|+||||+++++++++.....++++.+..+
T Consensus 425 QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~nk~~PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dl 504 (535)
T PRK15375 425 VLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADF 504 (535)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccCCCCceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHH
Confidence 344445779887654 56777777776653221 22379999999999999999999876667999999999
Q ss_pred HhhCCC-CCCCHHHHHHHHHHHHHHhc
Q 026154 211 KKRRPN-IQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 211 r~~Rp~-i~~n~~~~~~L~~~~~~~~~ 236 (242)
|..|++ ++.+++|+..|.+...+++-
T Consensus 505 R~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 505 RNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred HhcCCccccccHHHHHHHHHHHHHHhh
Confidence 999998 99999999999999887764
No 22
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.28 E-value=1.9e-11 Score=104.53 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=69.6
Q ss_pred cCCCCCCCh-hHHHHHHHHHHHHhh--CCCcEEEEcCCCCChHHHHHHHHHHH----cCCCCCHHHHHHHHHhhCCCCCC
Q 026154 147 TWDTRSPQP-GEIESAVKWGSRKRA--QNRPVFVHCAYGHGRSVAVACALLVA----LSIVEDWREAEKLIKKRRPNIQM 219 (242)
Q Consensus 147 i~D~~~p~~-~~l~~av~~i~~~~~--~~~~VlVHC~~G~~RS~~vv~ayLm~----~~~~~~~~eA~~~vr~~Rp~i~~ 219 (242)
+.|...|+. +++.++++.+++..+ .++||+|||.+|.||||++++++++. .++..++.++++.+|++||++..
T Consensus 138 W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~ 217 (231)
T cd00047 138 WPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQ 217 (231)
T ss_pred CCCCCccCChHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccC
Confidence 557777765 678888888877753 46899999999999999999999853 33457999999999999999999
Q ss_pred CHHHHHHHHH
Q 026154 220 NALQRKALEE 229 (242)
Q Consensus 220 n~~~~~~L~~ 229 (242)
+..|+.++.+
T Consensus 218 ~~~Qy~f~~~ 227 (231)
T cd00047 218 TEEQYIFLYR 227 (231)
T ss_pred CHHHHHHHHH
Confidence 9999999875
No 23
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=99.26 E-value=2.3e-11 Score=112.72 Aligned_cols=139 Identities=17% Similarity=0.119 Sum_probs=112.4
Q ss_pred CCceecCCeEEcCCcCccc-------------cCC--C-CCcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHH
Q 026154 97 PYSEVCEGLYVGGWPNSMT-------------TLP--P-GNPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIES 160 (242)
Q Consensus 97 ~~~~I~~~L~lG~~p~~~~-------------~L~--~-gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~ 160 (242)
-++-|+++|...++|+... .|+ + |--.|.||+.|.......-.-+...+|+.|+.+|+++.+..
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~~~f~g~V~~~~~~Dh~~P~L~~l~~ 93 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDPSRFHGRVARFGFDDHNPPPLELLCP 93 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCccccccceeecCCCCCCCCcHHHHHH
Confidence 4567999999999997652 132 2 56689999964333222223356679999999999999999
Q ss_pred HHHHHHHHhhCC--CcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhC---C--CCCCCHHHHHHHHHHHHH
Q 026154 161 AVKWGSRKRAQN--RPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRR---P--NIQMNALQRKALEEWSKH 233 (242)
Q Consensus 161 av~~i~~~~~~~--~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~R---p--~i~~n~~~~~~L~~~~~~ 233 (242)
+++-++.++++. .-|.|||++|++|||+++||||++.+...+.+||+.+.-.+| . .....+.|++.+..+++-
T Consensus 94 ~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~RYv~Y~~~~ 173 (434)
T KOG2283|consen 94 FCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQRRYVGYFSRV 173 (434)
T ss_pred HHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhhHHHHHHHHH
Confidence 999999998764 468899999999999999999999998888999999999999 4 357789999999999885
Q ss_pred Hh
Q 026154 234 RL 235 (242)
Q Consensus 234 ~~ 235 (242)
++
T Consensus 174 l~ 175 (434)
T KOG2283|consen 174 LL 175 (434)
T ss_pred hh
Confidence 44
No 24
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.25 E-value=4.6e-11 Score=106.38 Aligned_cols=108 Identities=9% Similarity=0.019 Sum_probs=74.8
Q ss_pred EEEEcCCCCCCcccCCCceEEEEEcCCCCCCC-hhHHHHHHHHHHHHh---------hCCCcEEEEcCCCCChHHHHHHH
Q 026154 123 AIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQ-PGEIESAVKWGSRKR---------AQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 123 ~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~-~~~l~~av~~i~~~~---------~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
+.+.++.+........+++|.. ++|++.|+ ...+.+++..+++.. ...+|++|||.+|+||||++++.
T Consensus 164 ~~l~l~~~~~~~r~V~Hfqyt~--WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFcai 241 (298)
T PHA02740 164 TLLSLTDKFGQAQKISHFQYTA--WPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFCVF 241 (298)
T ss_pred EEEEEEcCCCCcEEEEEEeecC--CCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHHHH
Confidence 4555554222112223344444 55877774 456666665554421 12479999999999999999997
Q ss_pred HHH----HcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q 026154 193 LLV----ALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSK 232 (242)
Q Consensus 193 yLm----~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~ 232 (242)
..+ ...+..|+.+.+..+|++|+++..+.+|+.++.+---
T Consensus 242 Di~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~ 285 (298)
T PHA02740 242 DICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIA 285 (298)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHH
Confidence 773 3445579999999999999999999999998875433
No 25
>PLN02727 NAD kinase
Probab=99.21 E-value=4.8e-11 Score=117.41 Aligned_cols=94 Identities=18% Similarity=0.216 Sum_probs=77.1
Q ss_pred CeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCc----------ccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhh
Q 026154 104 GLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKL----------REFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRA 170 (242)
Q Consensus 104 ~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~----------~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~ 170 (242)
.+|.++.|...+ .+ +.|+++|||++.+.+.. +...|++|+++|+.+...|+.++++++.+.+++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~apt~EqVe~fa~~l~~s-- 339 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDS-- 339 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHhh--
Confidence 578888887665 33 57999999998866532 1246899999999999999999999999998653
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcCC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALSI 199 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~~ 199 (242)
.++|||+||+.|..|+|+++++|+.+--+
T Consensus 340 lpkPVLvHCKSGarRAGamvA~yl~~~~~ 368 (986)
T PLN02727 340 SKKPIYLHSKEGVWRTSAMVSRWKQYMTR 368 (986)
T ss_pred cCCCEEEECCCCCchHHHHHHHHHHHHcc
Confidence 35899999999999999999999976443
No 26
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.17 E-value=2.3e-10 Score=103.07 Aligned_cols=95 Identities=18% Similarity=0.091 Sum_probs=73.7
Q ss_pred EcCCCCCCCh-hHHHHHHHHHHHHhh-----------CCCcEEEEcCCCCChHHHHHHHHH----HHcCCCCCHHHHHHH
Q 026154 146 PTWDTRSPQP-GEIESAVKWGSRKRA-----------QNRPVFVHCAYGHGRSVAVACALL----VALSIVEDWREAEKL 209 (242)
Q Consensus 146 Pi~D~~~p~~-~~l~~av~~i~~~~~-----------~~~~VlVHC~~G~~RS~~vv~ayL----m~~~~~~~~~eA~~~ 209 (242)
.|+|++.|+. ..+.+.++.+++..+ ..+||+|||.+|+||||++|+... +...+..|+.+++..
T Consensus 209 ~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~ 288 (323)
T PHA02746 209 DWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLK 288 (323)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4558777754 667777776665431 127999999999999999999766 344556899999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHhccccc
Q 026154 210 IKKRRPNIQMNALQRKALEEWSKHRLSTARR 240 (242)
Q Consensus 210 vr~~Rp~i~~n~~~~~~L~~~~~~~~~~~~~ 240 (242)
+|.+|+++..+.+|+.++.+.-...+...+.
T Consensus 289 lR~qR~~~Vqt~~QY~F~y~~l~~~l~~~~~ 319 (323)
T PHA02746 289 IRKQRHSSVFLPEQYAFCYKALKYAIIEEAK 319 (323)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999877666554433
No 27
>PHA02738 hypothetical protein; Provisional
Probab=99.15 E-value=2.1e-10 Score=103.21 Aligned_cols=112 Identities=15% Similarity=0.066 Sum_probs=76.7
Q ss_pred CcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh--------------CCCcEEEEcCCCCCh
Q 026154 121 NPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQP-GEIESAVKWGSRKRA--------------QNRPVFVHCAYGHGR 185 (242)
Q Consensus 121 i~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~--------------~~~~VlVHC~~G~~R 185 (242)
+.+.+.++..........+++|. .++|.+.|.. .++.+.+..+.+..+ ..+||+|||.+|+||
T Consensus 163 ~~~~l~l~~~~~~~r~V~h~~y~--~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGR 240 (320)
T PHA02738 163 VKSTLLLTDGTSATQTVTHFNFT--AWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGR 240 (320)
T ss_pred EEEEEEEEeCCCCcEEEEEEEEC--CCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCCh
Confidence 34556665432211112233333 4558777754 667776666655321 146999999999999
Q ss_pred HHHHHHHHH----HHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 026154 186 SVAVACALL----VALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHR 234 (242)
Q Consensus 186 S~~vv~ayL----m~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~ 234 (242)
||++++... +...+..|+.+++..+|++|++...+..|+.++.+--.++
T Consensus 241 tGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y 293 (320)
T PHA02738 241 TPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRY 293 (320)
T ss_pred hhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHH
Confidence 999998776 3344567899999999999999999999998877654443
No 28
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.14 E-value=4.6e-10 Score=100.25 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=70.3
Q ss_pred EEcCCCCCCCh-hHHHHHHHHHHHHhh------------CCCcEEEEcCCCCChHHHHHHHHHH----HcCCCCCHHHHH
Q 026154 145 VPTWDTRSPQP-GEIESAVKWGSRKRA------------QNRPVFVHCAYGHGRSVAVACALLV----ALSIVEDWREAE 207 (242)
Q Consensus 145 iPi~D~~~p~~-~~l~~av~~i~~~~~------------~~~~VlVHC~~G~~RS~~vv~ayLm----~~~~~~~~~eA~ 207 (242)
..++|++.|.. ..+.+.++.+++... ..+||+|||.+|+||||++++...+ ...+..++.+++
T Consensus 189 ~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V 268 (303)
T PHA02742 189 EDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIV 268 (303)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 34568877754 667777766665321 1479999999999999999998764 334457889999
Q ss_pred HHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 026154 208 KLIKKRRPNIQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 208 ~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~ 236 (242)
+.+|++|+++..+..|+.++.+.--+++.
T Consensus 269 ~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~ 297 (303)
T PHA02742 269 RDLRKQRHNCLSLPQQYIFCYFIVLIFAK 297 (303)
T ss_pred HHHHhhcccccCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988865544443
No 29
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.09 E-value=9.3e-10 Score=98.66 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=68.0
Q ss_pred EcCCCCCCCh-hHHHHHHHHHHHHhh-----------CCCcEEEEcCCCCChHHHHHHHHH----HHcCCCCCHHHHHHH
Q 026154 146 PTWDTRSPQP-GEIESAVKWGSRKRA-----------QNRPVFVHCAYGHGRSVAVACALL----VALSIVEDWREAEKL 209 (242)
Q Consensus 146 Pi~D~~~p~~-~~l~~av~~i~~~~~-----------~~~~VlVHC~~G~~RS~~vv~ayL----m~~~~~~~~~eA~~~ 209 (242)
-++|++.|+. ..+.+.++.+++.++ ..+||+|||.+|+||||++++... +...+..++.++++.
T Consensus 191 ~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~ 270 (312)
T PHA02747 191 EWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEK 270 (312)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 4568777754 566666666654432 137999999999999999999875 334456799999999
Q ss_pred HHhhCCCCCCCHHHHHHH---HHHHHHH
Q 026154 210 IKKRRPNIQMNALQRKAL---EEWSKHR 234 (242)
Q Consensus 210 vr~~Rp~i~~n~~~~~~L---~~~~~~~ 234 (242)
+|++|+++..+..|+.++ .+.-..+
T Consensus 271 lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~ 298 (312)
T PHA02747 271 IREQRHAGIMNFDDYLFIQPGYEVLHYF 298 (312)
T ss_pred HHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 5544433
No 30
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.03 E-value=8.4e-10 Score=109.11 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=73.0
Q ss_pred EcCCCCCCCh-hHHHHHHHHHHHHhhC-CCcEEEEcCCCCChHHHHHH----HHHHHcCCCCCHHHHHHHHHhhCCCCCC
Q 026154 146 PTWDTRSPQP-GEIESAVKWGSRKRAQ-NRPVFVHCAYGHGRSVAVAC----ALLVALSIVEDWREAEKLIKKRRPNIQM 219 (242)
Q Consensus 146 Pi~D~~~p~~-~~l~~av~~i~~~~~~-~~~VlVHC~~G~~RS~~vv~----ayLm~~~~~~~~~eA~~~vr~~Rp~i~~ 219 (242)
.|+|++.|+. ++|.++++.|...+.. +.||+|||.+|+||||++++ .||+......++.+.++.+|.+|-.+++
T Consensus 1035 aWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQ 1114 (1144)
T KOG0792|consen 1035 AWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQ 1114 (1144)
T ss_pred ccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcc
Confidence 4559888866 7788888888888776 67999999999999999986 4556666667889999999999999999
Q ss_pred CHHHHHHHHHHH
Q 026154 220 NALQRKALEEWS 231 (242)
Q Consensus 220 n~~~~~~L~~~~ 231 (242)
+..|++++.+--
T Consensus 1115 T~~QYkFVyevi 1126 (1144)
T KOG0792|consen 1115 TLSQYKFVYEVI 1126 (1144)
T ss_pred chHHhhHHHHHH
Confidence 999999988654
No 31
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=98.99 E-value=2.7e-09 Score=90.48 Aligned_cols=89 Identities=20% Similarity=0.222 Sum_probs=70.9
Q ss_pred EEEEEcCCCCCC-ChhHHHHHHHHHHHHh-hCCCcEEEEcCCCCChHHHHHHHHHH----HcCCCCCHHHHHHHHHhhCC
Q 026154 142 YLCVPTWDTRSP-QPGEIESAVKWGSRKR-AQNRPVFVHCAYGHGRSVAVACALLV----ALSIVEDWREAEKLIKKRRP 215 (242)
Q Consensus 142 y~~iPi~D~~~p-~~~~l~~av~~i~~~~-~~~~~VlVHC~~G~~RS~~vv~ayLm----~~~~~~~~~eA~~~vr~~Rp 215 (242)
|+...+.|...| +.+.+.++++.+.+.. ..++|++|||..|.||||+++++.++ ..++..+..++++.+|++||
T Consensus 138 ~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~ 217 (235)
T PF00102_consen 138 FHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRP 217 (235)
T ss_dssp EEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTST
T ss_pred eeeeeccccccccccchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCC
Confidence 333456676666 4466777777777766 45689999999999999999999884 34344789999999999999
Q ss_pred CCCCCHHHHHHHHHH
Q 026154 216 NIQMNALQRKALEEW 230 (242)
Q Consensus 216 ~i~~n~~~~~~L~~~ 230 (242)
+...+..|+.++...
T Consensus 218 ~~i~~~~qy~f~~~~ 232 (235)
T PF00102_consen 218 GAIQSPEQYRFCYMA 232 (235)
T ss_dssp TSSSSHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHH
Confidence 999999999998754
No 32
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.96 E-value=1.2e-09 Score=93.88 Aligned_cols=138 Identities=14% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCCceecCCeEEcCCcCccccCCCCCcEEEE-----cCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhh
Q 026154 96 EPYSEVCEGLYVGGWPNSMTTLPPGNPAIID-----CTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRA 170 (242)
Q Consensus 96 p~~~~I~~~L~lG~~p~~~~~L~~gi~~Vi~-----l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~ 170 (242)
-|+..+.+.+-+|..-......+.-...+++ ++..........++.|. -+.|...|+...+.+...-+...--
T Consensus 139 YWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~--nW~D~~~p~i~sl~~~~~sl~~sp~ 216 (302)
T COG5599 139 YWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYI--NWVDFNVPDIRSLTEVIHSLNDSPV 216 (302)
T ss_pred hCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCCCCccEEEEEEec--CccccCCcCHHHHHHHHHHhhcCcC
Confidence 3557888888888422211111112223333 33222211122233333 3668888866666665555554423
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcCCCCC-------------HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALSIVED-------------WREAEKLIKKRRPNIQMNALQRKALEEWSKHRL 235 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~-------------~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~ 235 (242)
.++|++|||.+|.|||||+++...+.+-...+ ..+.+..+|++|-.++.|..|.++|.+...++.
T Consensus 217 ~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~ 294 (302)
T COG5599 217 RTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELN 294 (302)
T ss_pred CCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 56899999999999999999988765433211 256788999999999999999999998777665
No 33
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.86 E-value=2.7e-08 Score=75.94 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=79.9
Q ss_pred CceecCCeEEcCCcCccc--cC-CCCCcEEEEcCCCCCCc-----------ccCCCceEEEEEcCCCCCCChhHHHHHHH
Q 026154 98 YSEVCEGLYVGGWPNSMT--TL-PPGNPAIIDCTCEFPKL-----------REFEGHSYLCVPTWDTRSPQPGEIESAVK 163 (242)
Q Consensus 98 ~~~I~~~L~lG~~p~~~~--~L-~~gi~~Vi~l~~e~~~~-----------~~~~g~~y~~iPi~D~~~p~~~~l~~av~ 163 (242)
+.+|.|.+.+++.++..| .+ ..|+++|||-..+.+++ ....|+.|.++|+.... .+.++++...+
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-iT~~dV~~f~~ 81 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-ITEADVEAFQR 81 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-CCHHHHHHHHH
Confidence 458999999999998776 34 46999999998754443 13578999999985543 55666777666
Q ss_pred HHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhh
Q 026154 164 WGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKR 213 (242)
Q Consensus 164 ~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~ 213 (242)
.+++. ++|||.||+.|- ||-++-..-.. .++ ++.+|..++-+..
T Consensus 82 Al~ea---egPVlayCrsGt-Rs~~ly~~~~~-~~g-m~~de~~a~g~a~ 125 (130)
T COG3453 82 ALDEA---EGPVLAYCRSGT-RSLNLYGLGEL-DGG-MSRDEIEALGQAA 125 (130)
T ss_pred HHHHh---CCCEEeeecCCc-hHHHHHHHHHH-hcC-CCHHHHHHHHHhh
Confidence 66654 699999999998 88776555553 333 6888887765543
No 34
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.83 E-value=5.9e-09 Score=83.84 Aligned_cols=60 Identities=22% Similarity=0.448 Sum_probs=47.6
Q ss_pred cCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 026154 136 EFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA 196 (242)
Q Consensus 136 ~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~ 196 (242)
...++.|+++|+.|+..|+.++++++++++... .++..+.+||.+|.|||.+.++.|.|-
T Consensus 89 ~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 89 EGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp HHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred hcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999999999988 667899999999999999999988764
No 35
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=98.78 E-value=6.1e-08 Score=77.04 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCC---CCCcccCCCceEEEEEcCCC-------CCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHH
Q 026154 118 PPGNPAIIDCTCE---FPKLREFEGHSYLCVPTWDT-------RSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSV 187 (242)
Q Consensus 118 ~~gi~~Vi~l~~e---~~~~~~~~g~~y~~iPi~D~-------~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~ 187 (242)
..|-++++++... +..+.....-+.+.+-+.|. ..|..++++..++|++++-+. .+++|||.+|+|||.
T Consensus 30 rh~~t~mlsl~a~~t~~~~pa~~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~aGISRSt 108 (172)
T COG5350 30 RHGPTHMLSLLAKGTYFHRPAVIAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYAGISRST 108 (172)
T ss_pred hcCCceEEEeecccccccCccccchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeeccccccch
Confidence 3577888888652 22221111113344444442 456667899999999999765 899999999999998
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHH
Q 026154 188 AVACALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALE 228 (242)
Q Consensus 188 ~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~ 228 (242)
+.+..--+.....++..|..+.+|..+|...||+....--.
T Consensus 109 A~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~d 149 (172)
T COG5350 109 AAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIAD 149 (172)
T ss_pred HHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHHH
Confidence 66543222222246889999999999999999987665433
No 36
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=98.70 E-value=3.5e-08 Score=80.32 Aligned_cols=105 Identities=26% Similarity=0.377 Sum_probs=52.2
Q ss_pred ecCC-eEEcCCcCccc-----cC-CCCCcEEEEcCCCCCCc----ccCCCceEEEEEcCCCCCCChhHH-----------
Q 026154 101 VCEG-LYVGGWPNSMT-----TL-PPGNPAIIDCTCEFPKL----REFEGHSYLCVPTWDTRSPQPGEI----------- 158 (242)
Q Consensus 101 I~~~-L~lG~~p~~~~-----~L-~~gi~~Vi~l~~e~~~~----~~~~g~~y~~iPi~D~~~p~~~~l----------- 158 (242)
|-+| +|-++.+.... .| +.||++|||+..+.+.. ....+++++++|+.+......+.+
T Consensus 16 ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 95 (164)
T PF13350_consen 16 IRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAP 95 (164)
T ss_dssp S-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHH
T ss_pred ecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchh
Confidence 4444 88888665432 23 46999999998754322 245689999999988654421110
Q ss_pred ---------------HHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHH
Q 026154 159 ---------------ESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAE 207 (242)
Q Consensus 159 ---------------~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~ 207 (242)
+...++++......+|||+||++|+.|||.+++..|...|- +.++.+
T Consensus 96 ~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV--~~~~I~ 157 (164)
T PF13350_consen 96 RGMLEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGV--PDEDII 157 (164)
T ss_dssp HHHHHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT----HHHHH
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCC--CHHHHH
Confidence 11111222223345799999999999999999999888774 445444
No 37
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=98.66 E-value=1.2e-08 Score=93.23 Aligned_cols=93 Identities=16% Similarity=0.203 Sum_probs=68.2
Q ss_pred ceEEEEEcCCCCCCCh-hHHHHHHHHHHHH---hhCCCcEEEEcCCCCChHHHHHHHHHH----HcCC---CCCHHHHHH
Q 026154 140 HSYLCVPTWDTRSPQP-GEIESAVKWGSRK---RAQNRPVFVHCAYGHGRSVAVACALLV----ALSI---VEDWREAEK 208 (242)
Q Consensus 140 ~~y~~iPi~D~~~p~~-~~l~~av~~i~~~---~~~~~~VlVHC~~G~~RS~~vv~ayLm----~~~~---~~~~~eA~~ 208 (242)
.+|+..-++|++.|.. -.+..+++-++.. ..+-+||.|||.+|+||+|++++.-++ +..+ ..|+...++
T Consensus 415 ~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIq 494 (600)
T KOG0790|consen 415 WHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQ 494 (600)
T ss_pred hhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHH
Confidence 3666777779998876 3344444444432 233479999999999999999876653 2221 257889999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHHH
Q 026154 209 LIKKRRPNIQMNALQRKALEEWSK 232 (242)
Q Consensus 209 ~vr~~Rp~i~~n~~~~~~L~~~~~ 232 (242)
+||++|.+++.++.|++++..--+
T Consensus 495 mVRsqRSGmVQTEaQYkFiY~Avq 518 (600)
T KOG0790|consen 495 MVRSQRSGMVQTEAQYKFIYVAVQ 518 (600)
T ss_pred HHHHHhcchhhhHHhHHHHHHHHH
Confidence 999999999999999999875433
No 38
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=98.53 E-value=4.6e-07 Score=76.99 Aligned_cols=113 Identities=24% Similarity=0.265 Sum_probs=82.8
Q ss_pred CCCCceecCCeEEcCCcCccc--cCC-CCCcEEEEcCCCC-CCc----ccCCCceEEEEEcCCCC----CC---Ch-hHH
Q 026154 95 EEPYSEVCEGLYVGGWPNSMT--TLP-PGNPAIIDCTCEF-PKL----REFEGHSYLCVPTWDTR----SP---QP-GEI 158 (242)
Q Consensus 95 ~p~~~~I~~~L~lG~~p~~~~--~L~-~gi~~Vi~l~~e~-~~~----~~~~g~~y~~iPi~D~~----~p---~~-~~l 158 (242)
+.+++.|.++||-+++|...+ .|+ .+.++||.++.|. |.. ....++++.++-+.... .| .. +.+
T Consensus 57 PlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P~~~~~~~~i 136 (249)
T KOG1572|consen 57 PLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEPFVNIPDHSI 136 (249)
T ss_pred CccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCCCCCChHHHH
Confidence 347888999999999998877 354 5899999999884 332 34678999999997654 23 22 347
Q ss_pred HHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 026154 159 ESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIK 211 (242)
Q Consensus 159 ~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr 211 (242)
.++++.+-+ +.+.|+||||..|.-|+++++.|.- +... |+..-.++..+
T Consensus 137 ~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgclR-klq~-W~lssil~Ey~ 185 (249)
T KOG1572|consen 137 RKALKVLLD--KRNYPILIHCKRGKHRTGCLVGCLR-KLQN-WSLSSILDEYL 185 (249)
T ss_pred HHHHHHHhc--ccCCceEEecCCCCcchhhhHHHHH-HHhc-cchhHHHHHHH
Confidence 888887544 3467999999999999999999977 3332 55544444433
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=98.49 E-value=8.3e-07 Score=79.67 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=72.5
Q ss_pred CCceEEEEEcCCCCCCCh-hHHHHHHHHHHHHhhC-CCcEEEEcCCCCChHHHHHHHHHHHcC----CCCCHHHHHHHHH
Q 026154 138 EGHSYLCVPTWDTRSPQP-GEIESAVKWGSRKRAQ-NRPVFVHCAYGHGRSVAVACALLVALS----IVEDWREAEKLIK 211 (242)
Q Consensus 138 ~g~~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~~-~~~VlVHC~~G~~RS~~vv~ayLm~~~----~~~~~~eA~~~vr 211 (242)
..++|.. ++|++.|+. ..+.+.++...+.... .+|+.|||.+|+|||||+++.--+.+. ...+.-..+..+|
T Consensus 253 r~f~y~~--wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR 330 (374)
T KOG0791|consen 253 RHFHYTA--WPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELR 330 (374)
T ss_pred EEEEEee--ccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhh
Confidence 3445554 459988855 4566766666666543 579999999999999999997765432 2245677888999
Q ss_pred hhCCCCCCCHHHHHHHHHHHHHHhc
Q 026154 212 KRRPNIQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 212 ~~Rp~i~~n~~~~~~L~~~~~~~~~ 236 (242)
..|+.+++|..|+-+|.+=-...+.
T Consensus 331 ~~R~~mVqte~Qyvfl~~c~~~~l~ 355 (374)
T KOG0791|consen 331 SARMLMVQTEDQYVFLHQCVLESLQ 355 (374)
T ss_pred hccccccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999976555443
No 40
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=98.46 E-value=4.6e-06 Score=78.10 Aligned_cols=130 Identities=19% Similarity=0.307 Sum_probs=98.5
Q ss_pred ecCCeEEcCCcCcc-------ccCCCCCcEEEEcCCCCCC-cccCCCceEEEEEcCCCCCC--Ch-hHHHHHHHHHHHHh
Q 026154 101 VCEGLYVGGWPNSM-------TTLPPGNPAIIDCTCEFPK-LREFEGHSYLCVPTWDTRSP--QP-GEIESAVKWGSRKR 169 (242)
Q Consensus 101 I~~~L~lG~~p~~~-------~~L~~gi~~Vi~l~~e~~~-~~~~~g~~y~~iPi~D~~~p--~~-~~l~~av~~i~~~~ 169 (242)
++.++|+|...... ......+..||+|.+.... ........|+++|+.....- ++ ..+.+++.|+.+..
T Consensus 292 ~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~~~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L 371 (451)
T PF04179_consen 292 GTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPKESWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHL 371 (451)
T ss_pred CCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccccccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHh
Confidence 46799999977622 1234578899999875532 23455678999999775433 23 56999999999988
Q ss_pred hC--CCcEEEEcCCCCChHHHHHHHHHHHcCCC---------------CCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 026154 170 AQ--NRPVFVHCAYGHGRSVAVACALLVALSIV---------------EDWREAEKLIKKRRPNIQMNALQRKALEEW 230 (242)
Q Consensus 170 ~~--~~~VlVHC~~G~~RS~~vv~ayLm~~~~~---------------~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~ 230 (242)
.+ +++|+|||..|...|+.++.|.|+..... ....+-+..|-+.+|.+.|++..++++..|
T Consensus 372 ~~~~~~~iLV~C~sGkDlSVgVaLaILc~~Fd~~g~~~~~~~~~~itK~~IR~rL~~I~~~~p~aNPSRaTLqsVNsF 449 (451)
T PF04179_consen 372 SSDPGKPILVCCDSGKDLSVGVALAILCKLFDDDGNFRDSFERPSITKDDIRQRLAWIISSRPDANPSRATLQSVNSF 449 (451)
T ss_pred cccCCCcEEEEcCCcchHHHHHHHHHHHHhcCcccCcccccccCCCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHh
Confidence 77 89999999999999999999999775431 012455778888899999999999988765
No 41
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.30 E-value=3.6e-06 Score=77.68 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=64.0
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHH-HHHHhhCCCcEEEEcCCCCChHHHHHHHHH----H-HcCCCCCHHHHHHHHHhh
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKW-GSRKRAQNRPVFVHCAYGHGRSVAVACALL----V-ALSIVEDWREAEKLIKKR 213 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~-i~~~~~~~~~VlVHC~~G~~RS~~vv~ayL----m-~~~~~~~~~eA~~~vr~~ 213 (242)
.|+...++|+..|+. ..+...++. ......+.+|+.|||.+|.||||++++... + ..+...+..+.+..+|.+
T Consensus 266 ~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 266 HYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred EEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 555556668776663 444444433 123333468999999999999999997653 2 122235689999999999
Q ss_pred CCCCCCCHHHHHHHHHHH
Q 026154 214 RPNIQMNALQRKALEEWS 231 (242)
Q Consensus 214 Rp~i~~n~~~~~~L~~~~ 231 (242)
|+.+..+..|+.++.+-.
T Consensus 346 R~~~vqt~~Qy~f~~~~~ 363 (415)
T KOG0789|consen 346 RPGAVQSPLQYLFIYAAT 363 (415)
T ss_pred hhhcccchhHHHHHHHHH
Confidence 999999999997777443
No 42
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.21 E-value=3.4e-06 Score=77.11 Aligned_cols=114 Identities=23% Similarity=0.142 Sum_probs=87.3
Q ss_pred CCcEEEEcCCCC--C-Cc-ccCCCceEEEEEcCCCC-CCChhHHHHHHHHHHH----HhhCCCcEEEEcCCCCChHHHHH
Q 026154 120 GNPAIIDCTCEF--P-KL-REFEGHSYLCVPTWDTR-SPQPGEIESAVKWGSR----KRAQNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 120 gi~~Vi~l~~e~--~-~~-~~~~g~~y~~iPi~D~~-~p~~~~l~~av~~i~~----~~~~~~~VlVHC~~G~~RS~~vv 190 (242)
.+.-++|++... . .+ ....++.|+.+....+. .|+.+.....++.+++ ....++=|+|||.+|++|++-++
T Consensus 63 ~vgl~iDltnt~ryy~~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI 142 (393)
T KOG2386|consen 63 KVGLKIDLTNTLRYYDKPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLI 142 (393)
T ss_pred eEEEEEeccceeeeeccccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceee
Confidence 577899998642 1 11 34578889888877754 5666554444444443 34456789999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q 026154 191 CALLVALSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHR 234 (242)
Q Consensus 191 ~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~ 234 (242)
++||+..+. ++..+|++.+...||...-.......|...+...
T Consensus 143 ~~yL~~~~~-~s~~~aik~f~~~r~~gi~k~dyi~~L~~~~~~~ 185 (393)
T KOG2386|consen 143 CAYLADVGG-YSSSEAIKRFADARPPGIEKQDYIDALYSRYHDI 185 (393)
T ss_pred eeeeeeccC-ccHHHHHHHHHHhCCCccCchHHHHHHhhccccc
Confidence 999999998 8999999999999999888888888888766543
No 43
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=98.18 E-value=8.4e-06 Score=70.92 Aligned_cols=116 Identities=18% Similarity=0.130 Sum_probs=67.3
Q ss_pred CCeEEcCCcCcccc---C--CCCCcEEEEcCCCCCCc--c---------cCCCceEEEEEcCCCCCCChhHHHHHHHHHH
Q 026154 103 EGLYVGGWPNSMTT---L--PPGNPAIIDCTCEFPKL--R---------EFEGHSYLCVPTWDTRSPQPGEIESAVKWGS 166 (242)
Q Consensus 103 ~~L~lG~~p~~~~~---L--~~gi~~Vi~l~~e~~~~--~---------~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~ 166 (242)
...|.++.|...+. + ..++++++++..+.... . ....+....++.........+.+.+.+..+.
T Consensus 53 ~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~ 132 (249)
T COG2365 53 IIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSFPTREDAAERLVELLQLLA 132 (249)
T ss_pred eeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccCccchhhHHHHHHHHHHHh
Confidence 34666776655542 2 24888888888622111 0 1112222222222222222334444444333
Q ss_pred HHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCCCCCCH
Q 026154 167 RKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRPNIQMNA 221 (242)
Q Consensus 167 ~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~i~~n~ 221 (242)
+. +++|||+||.+|..|+|.++++|+...+. .+-..+-++++.-++......
T Consensus 133 ~~--e~~PvL~HC~~GkdRTGl~~al~r~~~~~-~~~~v~~dyl~~~~~~~~~~~ 184 (249)
T COG2365 133 DA--ENGPVLIHCTAGKDRTGLVAALYRKLVGG-SDETVAADYLLTNRYGEPERR 184 (249)
T ss_pred hc--ccCCEEEecCCCCcchHHHHHHHHHHhCC-chhHHHHHHHHcCCccchhhH
Confidence 32 24999999999999999999999999886 444566677776666544444
No 44
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.02 E-value=1.2e-05 Score=80.84 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHHHHHhh--CCCcEEEEcCCCCChHHHHHHHHH----HHcCCCCCHHHHHHHHHh
Q 026154 139 GHSYLCVPTWDTRSPQPGEIESAVKWGSRKRA--QNRPVFVHCAYGHGRSVAVACALL----VALSIVEDWREAEKLIKK 212 (242)
Q Consensus 139 g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~--~~~~VlVHC~~G~~RS~~vv~ayL----m~~~~~~~~~eA~~~vr~ 212 (242)
.++|.-+|..+..+.....+....+......+ +.+|+.|||..|.|||++++++-+ |+..+..|+-++++.+|.
T Consensus 983 qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~ 1062 (1087)
T KOG4228|consen 983 QFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRF 1062 (1087)
T ss_pred EEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhh
Confidence 34556666655333333334444443333332 258999999999999999998766 566777899999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHHh
Q 026154 213 RRPNIQMNALQRKALEEWSKHRL 235 (242)
Q Consensus 213 ~Rp~i~~n~~~~~~L~~~~~~~~ 235 (242)
.||+++-+.+|++++.+--.+++
T Consensus 1063 ~rp~mv~t~~QY~fcYdv~~~y~ 1085 (1087)
T KOG4228|consen 1063 QRPGMVDTSDQYQFCYDVALEYL 1085 (1087)
T ss_pred cCccccCcHHHHHHHHHHHHHhh
Confidence 99999999999999987654443
No 45
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.92 E-value=9.1e-06 Score=81.69 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=65.7
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh-CCCcEEEEcCCCCChHHHHHHHHH----HHcCCCCCHHHHHHHHHhhC
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKWGSRKRA-QNRPVFVHCAYGHGRSVAVACALL----VALSIVEDWREAEKLIKKRR 214 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~-~~~~VlVHC~~G~~RS~~vv~ayL----m~~~~~~~~~eA~~~vr~~R 214 (242)
+++.-.++|+..|.. ..+.++++-+..... ..||++|||.+|.||||++++.-- |...+..|.-+-+..+|.+|
T Consensus 697 qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR 776 (1087)
T KOG4228|consen 697 QFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQR 776 (1087)
T ss_pred eeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhcc
Confidence 344445779888865 445554444443331 239999999999999999876444 34444578888899999999
Q ss_pred CCCCCCHHHHHHHHHH
Q 026154 215 PNIQMNALQRKALEEW 230 (242)
Q Consensus 215 p~i~~n~~~~~~L~~~ 230 (242)
+.++.+.+|+-++.+-
T Consensus 777 ~~mVQt~eQYiFi~~A 792 (1087)
T KOG4228|consen 777 NNMVQTEEQYIFIHEA 792 (1087)
T ss_pred ccccccHHHHHHHHHH
Confidence 9999999999887754
No 46
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.91 E-value=2.3e-05 Score=75.40 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=67.2
Q ss_pred eEEEEEcCCCCCCCh-hHHHHHHHHHHHHhh-CCCcEEEEcCCCCChHHHHHHHHH----HHcCC-CCCHHHHHHHHHhh
Q 026154 141 SYLCVPTWDTRSPQP-GEIESAVKWGSRKRA-QNRPVFVHCAYGHGRSVAVACALL----VALSI-VEDWREAEKLIKKR 213 (242)
Q Consensus 141 ~y~~iPi~D~~~p~~-~~l~~av~~i~~~~~-~~~~VlVHC~~G~~RS~~vv~ayL----m~~~~-~~~~~eA~~~vr~~ 213 (242)
+++.+.|.|.+.|.. ..+.++-+.++++.+ ...||+|||..|-||||+.++.-+ |.+|. ..|....++++|.+
T Consensus 894 QFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQ 973 (1004)
T KOG0793|consen 894 QFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQ 973 (1004)
T ss_pred eeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhc
Confidence 456666778887766 446676667777643 346999999999999999887666 44432 24667789999999
Q ss_pred CCCCCCCHHHHHHHH
Q 026154 214 RPNIQMNALQRKALE 228 (242)
Q Consensus 214 Rp~i~~n~~~~~~L~ 228 (242)
||+++-+..|.++..
T Consensus 974 R~GmVaTkdQFef~l 988 (1004)
T KOG0793|consen 974 RPGMVATKDQFEFAL 988 (1004)
T ss_pred CCcceeehhhhHHHH
Confidence 999999999988765
No 47
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=96.72 E-value=0.0048 Score=49.09 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=57.8
Q ss_pred ecCCeEEcCCcCccccCCCCCcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhC---CCcEEE
Q 026154 101 VCEGLYVGGWPNSMTTLPPGNPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQ---NRPVFV 177 (242)
Q Consensus 101 I~~~L~lG~~p~~~~~L~~gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~---~~~VlV 177 (242)
|.+.||.+........ ..-.+-.++.+| ..|..+ -.|.++.++.++-+.+..+++.+++ .++.+|
T Consensus 4 i~drLyf~~~~~~p~~--~~~~~yF~iD~~---------l~Y~~F-~~DFGPlnL~~lyrfc~~l~~~L~~~~~~~k~iv 71 (141)
T PF14671_consen 4 IPDRLYFASLRNKPKS--TPNTHYFSIDDE---------LVYENF-YADFGPLNLAQLYRFCCKLNKKLKSPELKKKKIV 71 (141)
T ss_dssp SSSSEEEEE-SS------BTTEEEEE-TTT---------S----S-SS------HHHHHHHHHHHHHHHH-GGGTTSEEE
T ss_pred CCCcEEEEEeCCCCCC--CCCcEEEEeCCe---------EEEecc-cCcCCCccHHHHHHHHHHHHHHHcCHHhcCCeEE
Confidence 4566887776542211 112234444333 334433 3689999999999999999988765 578889
Q ss_pred EcCCCCCh----HHHHHHHHHHHcCCCCCHHHHHHHHHhhCC
Q 026154 178 HCAYGHGR----SVAVACALLVALSIVEDWREAEKLIKKRRP 215 (242)
Q Consensus 178 HC~~G~~R----S~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp 215 (242)
||.....+ ++.++++|+|...+ ++++||++.+.+.-|
T Consensus 72 ~yts~d~~kRaNAA~Lig~y~Vi~l~-~spe~A~~~l~~~~p 112 (141)
T PF14671_consen 72 HYTSSDPKKRANAAFLIGAYAVIYLG-MSPEEAYKPLASIQP 112 (141)
T ss_dssp EEE-S-HHHHHHHHHHHHHHHHHTS----HHHHHHHHTTTT-
T ss_pred EECCCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhcCC
Confidence 98876544 58899999999886 899999999987754
No 48
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=0.12 Score=49.73 Aligned_cols=33 Identities=27% Similarity=0.563 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHH
Q 026154 160 SAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 160 ~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
.++...++.-..+.+|||||..|..||+-+++.
T Consensus 362 ga~~Ia~kVe~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 362 GAVRIADKVESESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred HHHHHHHHHhcCCceEEEEcCCCccchHHHHHH
Confidence 344445555566789999999999999977653
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.16 Score=37.43 Aligned_cols=67 Identities=19% Similarity=0.164 Sum_probs=40.1
Q ss_pred CCCcEEEEcCCCCCCcccCCCce-EEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 119 PGNPAIIDCTCEFPKLREFEGHS-YLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 119 ~gi~~Vi~l~~e~~~~~~~~g~~-y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
.+-..++|+.++.+.. ...-.. ..++|+.+......... ..++++++|+|+.|. ||.. ++.+|...
T Consensus 18 ~~~~~liDvR~~~e~~-~~~i~~~~~~ip~~~~~~~~~~~~----------~~~~~~ivv~C~~G~-rS~~-aa~~L~~~ 84 (110)
T COG0607 18 GEDAVLLDVREPEEYE-RGHIPGAAINIPLSELKAAENLLE----------LPDDDPIVVYCASGV-RSAA-AAAALKLA 84 (110)
T ss_pred cCCCEEEeccChhHhh-hcCCCcceeeeecccchhhhcccc----------cCCCCeEEEEeCCCC-ChHH-HHHHHHHc
Confidence 3556899998763321 112224 67778766432211100 566789999999999 8844 45556555
Q ss_pred C
Q 026154 198 S 198 (242)
Q Consensus 198 ~ 198 (242)
|
T Consensus 85 G 85 (110)
T COG0607 85 G 85 (110)
T ss_pred C
Confidence 4
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.62 E-value=0.34 Score=35.46 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=18.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
.++++|+|+|..|. ||... +.+|...|
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a-~~~L~~~G 85 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKA-SAYLKERG 85 (101)
T ss_pred cCCCEEEEECCCch-hHHHH-HHHHHHhC
Confidence 45689999999984 88754 44554444
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=91.12 E-value=0.36 Score=37.93 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=17.0
Q ss_pred hhCCCcEEEEcCCCCChHHHHHH
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ 191 (242)
...+++|++||..|. ||...+.
T Consensus 78 ~~~~~~IivyC~sG~-RS~~Aa~ 99 (136)
T PLN02160 78 LNPADDILVGCQSGA-RSLKATT 99 (136)
T ss_pred cCCCCcEEEECCCcH-HHHHHHH
Confidence 356789999999995 8876643
No 52
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=89.73 E-value=0.79 Score=34.61 Aligned_cols=29 Identities=24% Similarity=0.060 Sum_probs=20.4
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
...+.+|+|+|..| +++++.++..|...|
T Consensus 76 ~~~~~~vv~~c~~g-~~~a~~~~~~l~~~G 104 (122)
T cd01448 76 ISNDDTVVVYDDGG-GFFAARAWWTLRYFG 104 (122)
T ss_pred CCCCCEEEEECCCC-CccHHHHHHHHHHcC
Confidence 34568999999998 566666666665554
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=88.82 E-value=0.87 Score=41.70 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=17.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHH
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
.+|.+|+|||..|..||+.+++.
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHH
Confidence 57889999999999999776653
No 54
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=88.78 E-value=1.2 Score=33.76 Aligned_cols=71 Identities=20% Similarity=0.207 Sum_probs=36.6
Q ss_pred cEEEEcCCCCCCccc-CCCc-eEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 122 PAIIDCTCEFPKLRE-FEGH-SYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 122 ~~Vi~l~~e~~~~~~-~~g~-~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..|||+..+.+. . ..++ .-+++|..+......+ ......+......+++|+|+|..|. ||...+ ..|...+
T Consensus 16 ~~vIDvR~~~e~--~~~ghIpgA~~ip~~~~~~~~~~--~~~~~~l~~~~~~~~~ivv~C~~G~-rs~~aa-~~L~~~G 88 (117)
T cd01522 16 AVLVDVRTEAEW--KFVGGVPDAVHVAWQVYPDMEIN--PNFLAELEEKVGKDRPVLLLCRSGN-RSIAAA-EAAAQAG 88 (117)
T ss_pred eEEEECCCHHHH--hcccCCCCceecchhhccccccC--HHHHHHHHhhCCCCCeEEEEcCCCc-cHHHHH-HHHHHCC
Confidence 468999864331 1 1222 3456665443221111 1122233333346689999999985 887653 3344443
No 55
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=88.39 E-value=0.64 Score=33.83 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=17.8
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
.++++|+|+|..|. ||.. ++..|-..
T Consensus 59 ~~~~~ivv~C~~G~-rs~~-aa~~L~~~ 84 (100)
T cd01523 59 PDDQEVTVICAKEG-SSQF-VAELLAER 84 (100)
T ss_pred CCCCeEEEEcCCCC-cHHH-HHHHHHHc
Confidence 45689999999995 7754 33444443
No 56
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=87.89 E-value=0.82 Score=44.15 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred HHHHhh-CCCcEEEEcCCCCChHHHHHHH
Q 026154 165 GSRKRA-QNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 165 i~~~~~-~~~~VlVHC~~G~~RS~~vv~a 192 (242)
+.+.+. +|-+|+|||..|..||..|+..
T Consensus 336 ia~~l~~~~~sVlvhcsdGwDrT~qV~SL 364 (573)
T KOG1089|consen 336 IAKCLSSEGASVLVHCSDGWDRTCQVSSL 364 (573)
T ss_pred HHHHHHhCCCeEEEEccCCcchhHHHHHH
Confidence 333444 5689999999999999888763
No 57
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=84.88 E-value=2.3 Score=32.68 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=18.6
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
..++++|+|.|..|-.||...+ ++++.
T Consensus 83 i~~~~~vvvyC~~~G~rs~~a~--~~L~~ 109 (128)
T cd01520 83 LERDPKLLIYCARGGMRSQSLA--WLLES 109 (128)
T ss_pred cCCCCeEEEEeCCCCccHHHHH--HHHHH
Confidence 4567899999986545877544 66554
No 58
>PRK01415 hypothetical protein; Validated
Probab=84.44 E-value=2.6 Score=36.64 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=20.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcCC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALSI 199 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~ 199 (242)
.++++|+++|+.|+ ||. .++.+|...|-
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~-kAa~~L~~~Gf 196 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCE-KSTSLLKSIGY 196 (247)
T ss_pred cCCCeEEEECCCCh-HHH-HHHHHHHHcCC
Confidence 46789999999997 875 45667766653
No 59
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.67 E-value=2.5 Score=38.07 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcCC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALSI 199 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~~ 199 (242)
++++|+|+|..|. ||.. ++.+|...|-
T Consensus 170 kdk~IvvyC~~G~-Rs~~-aa~~L~~~Gf 196 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEK-ASAWMKHEGF 196 (314)
T ss_pred CcCeEEEECCCCc-HHHH-HHHHHHHcCC
Confidence 5689999999997 8854 4667766553
No 60
>PRK05320 rhodanese superfamily protein; Provisional
Probab=80.85 E-value=3.7 Score=35.84 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++++|+++|+.|. ||.. ++.+|...|
T Consensus 174 kdk~IvvyC~~G~-Rs~~-Aa~~L~~~G 199 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEK-AAIHMQEVG 199 (257)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcC
Confidence 4689999999997 8766 456676655
No 61
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=80.55 E-value=4.4 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=17.9
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++.+|+|||..|. ||.. ++..|...|
T Consensus 65 ~~~~ivv~C~~G~-rs~~-a~~~L~~~G 90 (109)
T cd01533 65 PRTPIVVNCAGRT-RSII-GAQSLINAG 90 (109)
T ss_pred CCCeEEEECCCCc-hHHH-HHHHHHHCC
Confidence 4579999999997 8744 444554444
No 62
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=79.29 E-value=3.5 Score=29.90 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCcEEEEcCCCCCCcccCCCc-eEEEEEcCCC----CCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHH
Q 026154 120 GNPAIIDCTCEFPKLREFEGH-SYLCVPTWDT----RSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 120 gi~~Vi~l~~e~~~~~~~~g~-~y~~iPi~D~----~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
+-..|||+..+.+- ...++ .-.++|..+. .....+.+.+..........++.+|+++|..|. |+...+.+
T Consensus 12 ~~~~liD~R~~~~~--~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 12 ESVLLIDVRSPEEY--ERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp TTEEEEEESSHHHH--HHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeCCHHHH--HcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccchhHHH
Confidence 44589999864331 11222 2478887443 222224455555544454566778999997776 66555444
No 63
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=78.01 E-value=7.4 Score=31.41 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.8
Q ss_pred hCCCcEEEEcCCCCChHHH
Q 026154 170 AQNRPVFVHCAYGHGRSVA 188 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~ 188 (242)
.++.+|++.|..|..||..
T Consensus 114 ~~d~~IVvYC~~G~~~S~~ 132 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWN 132 (162)
T ss_pred CCCCEEEEEECCCCHHHHH
Confidence 3568999999998878876
No 64
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=75.72 E-value=6 Score=29.44 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCChHHHHH
Q 026154 172 NRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 172 ~~~VlVHC~~G~~RS~~vv 190 (242)
..+|++||..|-.||...+
T Consensus 66 ~~~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAA 84 (113)
T ss_pred CCEEEEECCCCCcccHHHH
Confidence 4689999998666776543
No 65
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=74.88 E-value=4.8 Score=29.26 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=35.4
Q ss_pred cEEEEcCCCCCCcccCCCc-eEEEEEcCCCC---CCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 122 PAIIDCTCEFPKLREFEGH-SYLCVPTWDTR---SPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 122 ~~Vi~l~~e~~~~~~~~g~-~y~~iPi~D~~---~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
..|||++.+.+-. ..++ .-+++|..+.. .++.+++.+..... ...++.+|+|+|..|. ||.. ++..|...
T Consensus 16 ~~iiDvR~~~e~~--~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~c~~g~-~s~~-~~~~l~~~ 89 (106)
T cd01519 16 KVLIDVREPEELK--TGKIPGAINIPLSSLPDALALSEEEFEKKYGFP--KPSKDKELIFYCKAGV-RSKA-AAELARSL 89 (106)
T ss_pred EEEEECCCHHHHh--cCcCCCcEEechHHhhhhhCCCHHHHHHHhccc--CCCCCCeEEEECCCcH-HHHH-HHHHHHHc
Confidence 5799998642211 1112 23456654421 12233344432211 1234679999999986 7644 34444444
Q ss_pred C
Q 026154 198 S 198 (242)
Q Consensus 198 ~ 198 (242)
|
T Consensus 90 G 90 (106)
T cd01519 90 G 90 (106)
T ss_pred C
Confidence 3
No 66
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=74.39 E-value=8 Score=27.97 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=18.1
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++++|+++|..| .||... +.+|.+.|
T Consensus 57 ~~~~vv~~c~~g-~rs~~~-~~~l~~~G 82 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQV-AQWLLRQG 82 (101)
T ss_pred CCCeEEEEeCCC-chHHHH-HHHHHHcC
Confidence 468999999998 487554 44555544
No 67
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=72.62 E-value=12 Score=27.64 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=15.1
Q ss_pred hCCCcEEEEcCCCCChHHHHHH
Q 026154 170 AQNRPVFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ 191 (242)
..+.+|++||..+-.||...+-
T Consensus 60 ~~~~~iv~yC~~~~~r~~~aa~ 81 (113)
T cd01531 60 SKKDTVVFHCALSQVRGPSAAR 81 (113)
T ss_pred CCCCeEEEEeecCCcchHHHHH
Confidence 3457899999855457766543
No 68
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=70.78 E-value=14 Score=33.05 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=53.7
Q ss_pred ecCCeEEcCCcCccc---cCCCCCcEEEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhh--CCCcE
Q 026154 101 VCEGLYVGGWPNSMT---TLPPGNPAIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRA--QNRPV 175 (242)
Q Consensus 101 I~~~L~lG~~p~~~~---~L~~gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~--~~~~V 175 (242)
|.|.-.+|......+ .+...-+.|||..+.++-. .=++ .+...|+.+.|++.-.++++..+ ++++|
T Consensus 105 v~p~~~vG~yl~p~~wn~~l~D~~~vviDtRN~YE~~-------iG~F--~gAv~p~~~tFrefP~~v~~~~~~~~~KkV 175 (308)
T COG1054 105 VDPLENVGTYLSPKDWNELLSDPDVVVIDTRNDYEVA-------IGHF--EGAVEPDIETFREFPAWVEENLDLLKDKKV 175 (308)
T ss_pred cCccccccCccCHHHHHHHhcCCCeEEEEcCcceeEe-------eeee--cCccCCChhhhhhhHHHHHHHHHhccCCcE
Confidence 455445555444443 2322226788887766531 1111 25566777888888888887653 47899
Q ss_pred EEEcCCCCChHHHHHHHHHHHcC
Q 026154 176 FVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 176 lVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
...|+.|+ |. =-+.+||...|
T Consensus 176 vmyCTGGI-RC-EKas~~m~~~G 196 (308)
T COG1054 176 VMYCTGGI-RC-EKASAWMKENG 196 (308)
T ss_pred EEEcCCce-ee-hhhHHHHHHhc
Confidence 99999999 65 34456666554
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=70.10 E-value=9.9 Score=34.19 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=14.3
Q ss_pred hCCCcEEEEcCCCCChHHHHH
Q 026154 170 AQNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv 190 (242)
..+.+|+|+|..|-.||..++
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa 92 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLA 92 (311)
T ss_pred CCCCcEEEEECCCChHHHHHH
Confidence 334459999975556887664
No 70
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=68.67 E-value=7 Score=30.72 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=37.4
Q ss_pred CCCCCcEEEEcCCCCCCcccCCC-ceEEEEEcCCCCC---CChhHHHHHHHHHHHHhh-CCCcEEEEcCCCCChHHHHH
Q 026154 117 LPPGNPAIIDCTCEFPKLREFEG-HSYLCVPTWDTRS---PQPGEIESAVKWGSRKRA-QNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 117 L~~gi~~Vi~l~~e~~~~~~~~g-~~y~~iPi~D~~~---p~~~~l~~av~~i~~~~~-~~~~VlVHC~~G~~RS~~vv 190 (242)
++++-...||+.+..+- ...+ -.-+++|..-... .+..+|.+-+. .... ..+.+.++|+.|. ||....
T Consensus 34 ~~~~~~~llDVRepeEf--k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg---~~kp~~d~eiIf~C~SG~-Rs~~A~ 106 (136)
T KOG1530|consen 34 LQHPDVVLLDVREPEEF--KQGHIPASINIPYMSRPGAGALKNPEFLKQVG---SSKPPHDKEIIFGCASGV-RSLKAT 106 (136)
T ss_pred hcCCCEEEEeecCHHHh--hccCCcceEeccccccccccccCCHHHHHHhc---ccCCCCCCcEEEEeccCc-chhHHH
Confidence 35555788999863331 1222 2566777643221 22233444333 2222 2358999999998 886543
No 71
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=66.68 E-value=11 Score=34.31 Aligned_cols=20 Identities=30% Similarity=0.250 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCChHHHHH
Q 026154 171 QNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv 190 (242)
++.+|+|+|..|-.||..++
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa 106 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQ 106 (345)
T ss_pred CCCeEEEEECCCChHHHHHH
Confidence 56899999976656988864
No 72
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=64.26 E-value=11 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=18.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++.+|+|+|..|...++..++..|...+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G 76 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELG 76 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence 3679999999987444455555555544
No 73
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=63.00 E-value=10 Score=34.91 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=17.3
Q ss_pred CcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 173 RPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 173 ~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
.+|+|||+.|. ||... +..|...|
T Consensus 333 ~~Ivv~C~sG~-RS~~A-a~~L~~~G 356 (370)
T PRK05600 333 DNVVVYCASGI-RSADF-IEKYSHLG 356 (370)
T ss_pred CcEEEECCCCh-hHHHH-HHHHHHcC
Confidence 38999999996 88754 45555544
No 74
>PRK05569 flavodoxin; Provisional
Probab=58.13 E-value=46 Score=25.49 Aligned_cols=106 Identities=10% Similarity=-0.041 Sum_probs=56.2
Q ss_pred EEEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCC-hHHHHHHHHHHHcCCCC
Q 026154 123 AIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHG-RSVAVACALLVALSIVE 201 (242)
Q Consensus 123 ~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~-RS~~vv~ayLm~~~~~~ 201 (242)
.+.++.............-.+-.|+.+...+...++..+++.+....-+|++|.+-+..|.+ ..+.-...-.+...+ .
T Consensus 34 ~~~~~~~~~~~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g-~ 112 (141)
T PRK05569 34 TIKHVADAKVEDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYG-F 112 (141)
T ss_pred EEEECCcCCHHHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCC-C
Confidence 44555432221122334556777877665433345556555554444467899999998875 222212222222221 1
Q ss_pred CHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 026154 202 DWREAEKLIKKRRPNIQMNALQRKALEEWSKHRL 235 (242)
Q Consensus 202 ~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~ 235 (242)
+.-.. + .-.-.|+.+..+++++|-+++.
T Consensus 113 ~~~~~---~---~~~~~p~~~~~~~~~~~g~~l~ 140 (141)
T PRK05569 113 NVIGD---L---AVNESPNKEELNSAKELGKKLA 140 (141)
T ss_pred eEeee---E---EEccCCCHHHHHHHHHHHHHHh
Confidence 11111 1 1124588999999999977764
No 75
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=57.99 E-value=14 Score=26.44 Aligned_cols=27 Identities=15% Similarity=0.145 Sum_probs=18.6
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..+.+|+|+|..|. ||... +.+|...|
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~-~~~l~~~G 80 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFA-AQELLALG 80 (96)
T ss_pred CCCCCEEEEeCChH-HHHHH-HHHHHHcC
Confidence 45689999998774 77554 45565544
No 76
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=57.78 E-value=17 Score=29.90 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVA 188 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~ 188 (242)
+.++++.+.+.+...+|++|+++ |.|+|++
T Consensus 25 ~~I~~aa~~i~~~l~~G~Kvl~c---GNGgSaa 54 (176)
T COG0279 25 EAIERAAQLLVQSLLNGNKVLAC---GNGGSAA 54 (176)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---CCCcchh
Confidence 56888888888899999999885 6777765
No 77
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=56.99 E-value=14 Score=26.40 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
++.+|+++|..|. ||.. ++.+|...
T Consensus 55 ~~~~iv~~c~~G~-rs~~-aa~~L~~~ 79 (95)
T cd01534 55 RGARIVLADDDGV-RADM-TASWLAQM 79 (95)
T ss_pred CCCeEEEECCCCC-hHHH-HHHHHHHc
Confidence 3578999999987 7754 34445433
No 78
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=56.56 E-value=28 Score=29.08 Aligned_cols=37 Identities=19% Similarity=0.145 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLV 195 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm 195 (242)
+.++++++.+.+...++++|++. |.|+|++++...-.
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~---G~GgSa~~A~~~a~ 61 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCC---GNGTSAANAQHFAA 61 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEE---ECcHHHHHHHHHHH
Confidence 56889999999999999999885 88899887665444
No 79
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=56.29 E-value=6.2 Score=29.28 Aligned_cols=11 Identities=27% Similarity=1.020 Sum_probs=9.2
Q ss_pred CCcEEEEcCCC
Q 026154 172 NRPVFVHCAYG 182 (242)
Q Consensus 172 ~~~VlVHC~~G 182 (242)
..+|||||.-|
T Consensus 85 ~~~~yIhCsIG 95 (97)
T PF10302_consen 85 APRIYIHCSIG 95 (97)
T ss_pred CCeEEEEEecc
Confidence 36899999877
No 80
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=55.97 E-value=20 Score=26.41 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
.+.+|+|+|..|. ||... +..|...|
T Consensus 57 ~~~~vvlyC~~G~-rS~~a-a~~L~~~G 82 (101)
T TIGR02981 57 KNDTVKLYCNAGR-QSGMA-KDILLDMG 82 (101)
T ss_pred CCCeEEEEeCCCH-HHHHH-HHHHHHcC
Confidence 4568999999996 77655 34444443
No 81
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=54.42 E-value=23 Score=31.54 Aligned_cols=19 Identities=37% Similarity=0.557 Sum_probs=16.0
Q ss_pred cEEEEcCCCCChHHHHHHH
Q 026154 174 PVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 174 ~VlVHC~~G~~RS~~vv~a 192 (242)
.|-|-|+.|..||++++=.
T Consensus 244 tIaiGCTGG~HRSV~iae~ 262 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAER 262 (284)
T ss_pred EEEEEcCCCcCcHHHHHHH
Confidence 4888999999999998643
No 82
>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi. Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.
Probab=53.81 E-value=52 Score=24.63 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=45.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCCCCCCchHHHHHHH
Q 026154 3 VGISFLISLKATVHFIVFVFLRSLGFTLLSLPFLYASLVSLLIALASHPSINLPMLLGKKSDGSFPIWSIILF 75 (242)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~~~l~ 75 (242)
|.++..+..+.++++..+- .+| ..++...++-..++++..+..|. -+.|....++.++++.+...++.
T Consensus 25 m~la~~il~Pi~lvL~~~~--sr~-~~~~q~~~~~l~~~g~~~g~~~~--~~~p~lyp~n~H~k~g~il~~l~ 92 (105)
T PF10348_consen 25 MTLAWVILYPIGLVLGNAR--SRW-HLPVQTVFLVLMILGLFLGSVYN--GSTPDLYPNNAHGKMGWILFVLM 92 (105)
T ss_pred HHHHHHHHHHHHHHHHHcc--chH-HHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCCCCHHHHHHHHHHHHH
Confidence 5667777777776654333 233 33556666666667777777785 45577778888998887777665
No 83
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=52.78 E-value=27 Score=25.95 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++.+|+++|..|. ||...+ ..|...|
T Consensus 59 ~~~~IVlyC~~G~-rS~~aa-~~L~~~G 84 (104)
T PRK10287 59 KNDTVKLYCNAGR-QSGQAK-EILSEMG 84 (104)
T ss_pred CCCeEEEEeCCCh-HHHHHH-HHHHHcC
Confidence 4568999999884 666553 3444443
No 84
>PRK07411 hypothetical protein; Validated
Probab=52.10 E-value=17 Score=33.75 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=17.8
Q ss_pred CCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 171 QNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 171 ~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
++++|+|||..|. ||.. ++..|-..|
T Consensus 341 ~d~~IVvyC~~G~-RS~~-aa~~L~~~G 366 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAK-ALGILKEAG 366 (390)
T ss_pred CCCeEEEECCCCH-HHHH-HHHHHHHcC
Confidence 4679999999887 8855 344444433
No 85
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=51.18 E-value=23 Score=25.26 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=14.3
Q ss_pred hhCCCcEEEEcCCCCChHHH
Q 026154 169 RAQNRPVFVHCAYGHGRSVA 188 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~ 188 (242)
...+.+|+|+|..|. ||..
T Consensus 58 ~~~~~~ivv~c~~g~-~s~~ 76 (103)
T cd01447 58 FAEDKPFVFYCASGW-RSAL 76 (103)
T ss_pred CCCCCeEEEEcCCCC-cHHH
Confidence 345689999999884 7743
No 86
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=50.02 E-value=28 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=17.2
Q ss_pred hCCCc---EEEEcCCCCChHHHHHH
Q 026154 170 AQNRP---VFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 170 ~~~~~---VlVHC~~G~~RS~~vv~ 191 (242)
++|++ |-|=|+.|..||++++=
T Consensus 238 ~egks~lTIaIGCTGGqHRSV~iae 262 (286)
T COG1660 238 KEGKSYLTIAIGCTGGQHRSVYIAE 262 (286)
T ss_pred hcCCeEEEEEEccCCCccchHHHHH
Confidence 44553 67899999999999864
No 87
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=49.85 E-value=21 Score=25.52 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=17.7
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..+++|+++|..|. ||.. ++..|.+.+
T Consensus 52 ~~~~~iv~~c~~g~-~s~~-~~~~L~~~g 78 (99)
T cd01527 52 VGANAIIFHCRSGM-RTQQ-NAERLAAIS 78 (99)
T ss_pred CCCCcEEEEeCCCc-hHHH-HHHHHHHcC
Confidence 45689999999986 6554 344444443
No 88
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=49.82 E-value=33 Score=26.63 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHH
Q 026154 155 PGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 155 ~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ 191 (242)
.+.+.++.+.+.+..++|++|++. |.|-|++.+.
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~---G~G~S~~~a~ 51 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVC---GNGHSAAIAS 51 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEE---ESTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---cCchhhhHHH
Confidence 467899999999999998988874 4455655543
No 89
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=49.44 E-value=23 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.632 Sum_probs=14.4
Q ss_pred hCCCcEEEEcCCCCChHHHH
Q 026154 170 AQNRPVFVHCAYGHGRSVAV 189 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~v 189 (242)
.++.+|+++|..|. ||..+
T Consensus 76 ~~~~~iv~yc~~g~-~s~~~ 94 (118)
T cd01449 76 TPDKPVIVYCGSGV-TACVL 94 (118)
T ss_pred CCCCCEEEECCcHH-HHHHH
Confidence 35689999999875 66654
No 90
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=48.91 E-value=28 Score=27.28 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCC
Q 026154 158 IESAVKWGSRKRAQNRPVFVHCAY 181 (242)
Q Consensus 158 l~~av~~i~~~~~~~~~VlVHC~~ 181 (242)
..-+++.+++..++|.+|+|+|..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d 38 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPD 38 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC
Confidence 567888999999999999999954
No 91
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=48.79 E-value=33 Score=30.50 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=15.0
Q ss_pred EEEEcCCCCChHHHHHH
Q 026154 175 VFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 175 VlVHC~~G~~RS~~vv~ 191 (242)
|-|-|+.|..||++++=
T Consensus 248 i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 248 IAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEecCCCcccHHHHHH
Confidence 78899999999998864
No 92
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=48.16 E-value=76 Score=27.28 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCCCCCCchHHHHHHH-hhhhH
Q 026154 10 SLKATVHFIVFVFLRSLG-FTLLSLPFLYASLVSLLIALASHPSINLPMLLGKKSDGSFPIWSIILF-SPYIY 80 (242)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~~~l~-~P~~~ 80 (242)
++....++++.+.+.|.+ +.++-++-|+-++.. +-|++.|-+...-.+.. .||.+
T Consensus 156 aml~Vf~LF~lvmt~g~d~m~fl~v~~ly~~ia~----------------~ik~se~~~~~lwyi~Y~vPY~~ 212 (230)
T PF03904_consen 156 AMLFVFMLFALVMTIGSDFMDFLHVDHLYKAIAS----------------KIKASESFWTYLWYIAYLVPYIF 212 (230)
T ss_pred HHHHHHHHHHHHHHhcccchhhhhHHHHHHHHHH----------------HHhhhHhHHHHHHHHHHhhHHHH
Confidence 344444555555555555 336666666655544 33888886654333333 78887
No 93
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.23 E-value=17 Score=26.65 Aligned_cols=17 Identities=18% Similarity=0.442 Sum_probs=13.5
Q ss_pred CcEEEEcCCCCChHHHHH
Q 026154 173 RPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 173 ~~VlVHC~~G~~RS~~vv 190 (242)
.+|++-|.+|.+ |..++
T Consensus 4 ~~ILl~C~~G~s-SS~l~ 20 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV 20 (95)
T ss_pred cEEEEECCCchh-HHHHH
Confidence 689999999998 55443
No 94
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=46.96 E-value=30 Score=25.41 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=18.2
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..++.+|+|+|..|.+..+..++..|-..|
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G 90 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELG 90 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcC
Confidence 356789999999886433333344443433
No 95
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=46.63 E-value=27 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=17.0
Q ss_pred CCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 172 NRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 172 ~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
+++|+|+|..|. ||...+. .|...|
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~-~L~~~G 89 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA-FLVKCG 89 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH-HHHHcC
Confidence 578999999987 7765433 444444
No 96
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=46.51 E-value=25 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=18.2
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..+++|+|+|..|. ||...+ ..|-..|
T Consensus 70 ~~~~~ivv~C~~G~-rs~~aa-~~L~~~G 96 (122)
T cd01526 70 DKDSPIYVVCRRGN-DSQTAV-RKLKELG 96 (122)
T ss_pred CCCCcEEEECCCCC-cHHHHH-HHHHHcC
Confidence 45689999999995 876433 3444443
No 97
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=46.40 E-value=23 Score=26.84 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=16.8
Q ss_pred hCCCcEEEEcC-CCCChHHHHHHHHHHH
Q 026154 170 AQNRPVFVHCA-YGHGRSVAVACALLVA 196 (242)
Q Consensus 170 ~~~~~VlVHC~-~G~~RS~~vv~ayLm~ 196 (242)
.++.+|+|||. .| .||+.+ +.+|..
T Consensus 66 ~~~~~vv~yC~~sg-~rs~~a-a~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSS-KRGPRM-ARHLRN 91 (121)
T ss_pred CCCCEEEEECCCcc-ccHHHH-HHHHHH
Confidence 45689999997 66 477664 334544
No 98
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=45.17 E-value=30 Score=27.30 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYG 182 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G 182 (242)
+...-+++.+++..++|.+|+|+|..-
T Consensus 13 ~~~~~~c~L~~ka~~~g~rv~I~~~d~ 39 (142)
T PRK05728 13 ALEALLCELAEKALRAGWRVLVQCEDE 39 (142)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 346668889999999999999999543
No 99
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=44.37 E-value=50 Score=26.57 Aligned_cols=27 Identities=7% Similarity=-0.141 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCC
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYG 182 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G 182 (242)
..+.-+++.+++..++|.+|+|+|...
T Consensus 13 ~~~~~acrL~~Ka~~~G~rv~I~~~d~ 39 (154)
T PRK06646 13 LLLKSILLLIEKCYYSDLKSVILTADA 39 (154)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 456778889999999999999999543
No 100
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=43.91 E-value=68 Score=21.94 Aligned_cols=28 Identities=39% Similarity=0.572 Sum_probs=16.5
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..++.+|+|+|..|. |+. .++.+|-..+
T Consensus 53 ~~~~~~iv~~c~~g~-~a~-~~~~~l~~~G 80 (100)
T smart00450 53 LDKDKPVVVYCRSGN-RSA-KAAWLLRELG 80 (100)
T ss_pred CCCCCeEEEEeCCCc-HHH-HHHHHHHHcC
Confidence 345689999996655 653 3334443433
No 101
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=42.84 E-value=54 Score=27.69 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA 196 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~ 196 (242)
+++.++++.|-+. .|+|+|- |.||||.+.-+.-|+
T Consensus 26 ~~~~~a~~~i~~~---~gkv~V~---G~GkSG~Igkk~Aa~ 60 (202)
T COG0794 26 EDFVRAVELILEC---KGKVFVT---GVGKSGLIGKKFAAR 60 (202)
T ss_pred HHHHHHHHHHHhc---CCcEEEE---cCChhHHHHHHHHHH
Confidence 4455666655544 5788884 999999998766654
No 102
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=42.28 E-value=25 Score=28.05 Aligned_cols=22 Identities=14% Similarity=0.347 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhCCCcEEEEcCC
Q 026154 160 SAVKWGSRKRAQNRPVFVHCAY 181 (242)
Q Consensus 160 ~av~~i~~~~~~~~~VlVHC~~ 181 (242)
-+++.+++...+|.+|+|+|..
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d 38 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCED 38 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCC
Confidence 7888999999999999999954
No 103
>PRK13938 phosphoheptose isomerase; Provisional
Probab=41.80 E-value=70 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA 196 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~ 196 (242)
+.+.++.+.+.+...++++|++. |.|+|+.++...-.+
T Consensus 29 ~~~~~~a~~~~~~l~~g~rI~i~---G~G~S~~~A~~fa~~ 66 (196)
T PRK13938 29 EAARAIGDRLIAGYRAGARVFMC---GNGGSAADAQHFAAE 66 (196)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHHHHHHHH
Confidence 56888888888889999999885 888888877655544
No 104
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=41.48 E-value=49 Score=27.35 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHH
Q 026154 155 PGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 155 ~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv 190 (242)
.+.++++++.|.+...++++|++. |.|.|+.++
T Consensus 27 ~~~i~~a~~~i~~al~~~~rI~i~---G~G~S~~~A 59 (192)
T PRK00414 27 IHAIQRAAVLIADSFKAGGKVLSC---GNGGSHCDA 59 (192)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 367999999999999999998775 666666643
No 105
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=40.83 E-value=80 Score=22.00 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=17.3
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..++.+|+|+|..|. ||.. ++..|-..|
T Consensus 53 ~~~~~~ivv~c~~g~-~s~~-a~~~l~~~G 80 (96)
T cd01444 53 LDRDRPVVVYCYHGN-SSAQ-LAQALREAG 80 (96)
T ss_pred cCCCCCEEEEeCCCC-hHHH-HHHHHHHcC
Confidence 356789999999664 5544 333444433
No 106
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=39.42 E-value=27 Score=30.29 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=22.0
Q ss_pred CCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 026154 149 DTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGH 183 (242)
Q Consensus 149 D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~ 183 (242)
+++..+.++++++++++.+... ..-++.||.++.
T Consensus 119 STG~stl~EI~~Av~~~~~~~~-~~l~llHC~s~Y 152 (241)
T PF03102_consen 119 STGMSTLEEIERAVEVLREAGN-EDLVLLHCVSSY 152 (241)
T ss_dssp E-TT--HHHHHHHHHHHHHHCT---EEEEEE-SSS
T ss_pred ECCCCCHHHHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence 5566778899999999965543 367899999875
No 107
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=39.06 E-value=34 Score=29.96 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=17.3
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..+++|+++|..|+ ||+. +..+|...|
T Consensus 229 ~~~~~ii~yC~~G~-~A~~-~~~~l~~~G 255 (281)
T PRK11493 229 SFDRPIIASCGSGV-TAAV-VVLALATLD 255 (281)
T ss_pred CCCCCEEEECCcHH-HHHH-HHHHHHHcC
Confidence 45679999998887 5544 333343333
No 108
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=38.01 E-value=43 Score=30.03 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHH
Q 026154 154 QPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVA 188 (242)
Q Consensus 154 ~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~ 188 (242)
+.+++++..+. ....++++|+++|..|+ |++.
T Consensus 253 ~~~el~~~~~~--~gi~~~~~iv~yC~sG~-~A~~ 284 (320)
T PLN02723 253 PAEELKKRFEQ--EGISLDSPIVASCGTGV-TACI 284 (320)
T ss_pred CHHHHHHHHHh--cCCCCCCCEEEECCcHH-HHHH
Confidence 33555554331 12455789999998876 5443
No 109
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=37.58 E-value=84 Score=24.38 Aligned_cols=58 Identities=17% Similarity=0.080 Sum_probs=30.2
Q ss_pred ceEEEEEcCCCCCCCh-hH-HHHHHHHHHHHhhCCC--cEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 140 HSYLCVPTWDTRSPQP-GE-IESAVKWGSRKRAQNR--PVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 140 ~~y~~iPi~D~~~p~~-~~-l~~av~~i~~~~~~~~--~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
+.-+.+|+.|...+.. .. ++...+.|.+..++++ ++++ |-+|--++-++.++|.+...
T Consensus 54 i~~i~~~~~DI~t~~d~~~~~~~I~~~i~~l~~~~~~~~lh~-~iaGGRK~Ms~~~~~a~sl~ 115 (124)
T TIGR03642 54 VHKIPLKFDDILSDEDILTFMSIAAKEVKKERENYGCERIIV-NISGGRKIMTIILALYAQLL 115 (124)
T ss_pred EEEeccCccccCCHHHHHHHHHHHHHHHHHHhhCCCcceEEE-EecCCHHHHHHHHHHHHHHh
Confidence 3344456666554332 22 3334444455555544 3444 45555478888888776543
No 110
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=37.56 E-value=49 Score=30.69 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=45.0
Q ss_pred EEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCH
Q 026154 124 IIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVEDW 203 (242)
Q Consensus 124 Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~ 203 (242)
||-+..+.+.....-|+.|..+|+.+...++.+.+.++++ .+-+-|+|.=+.|.+.-.++.. .+.
T Consensus 113 VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~------~~tk~v~IQRSrGYs~R~sl~i---------~~I 177 (403)
T PF06838_consen 113 VIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK------PNTKMVLIQRSRGYSWRPSLTI---------EEI 177 (403)
T ss_dssp HHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH------TTEEEEEEE-S-TTSSS----H---------HHH
T ss_pred HhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc------cCceEEEEecCCCCCCCCCCCH---------HHH
Confidence 3333443333334578999999999999898887777665 2335677776667753332211 145
Q ss_pred HHHHHHHHhhCCCCC
Q 026154 204 REAEKLIKKRRPNIQ 218 (242)
Q Consensus 204 ~eA~~~vr~~Rp~i~ 218 (242)
+++++.||+.+|.+.
T Consensus 178 ~~~i~~vk~~~p~~i 192 (403)
T PF06838_consen 178 KEIIKFVKEINPDVI 192 (403)
T ss_dssp HHHHHHHHHH-TTSE
T ss_pred HHHHHHHHhhCCCeE
Confidence 888999999999653
No 111
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=36.24 E-value=68 Score=25.74 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHH
Q 026154 154 QPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVA 190 (242)
Q Consensus 154 ~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv 190 (242)
+.++++++++.+.+...+.++|++. |.|.|..++
T Consensus 15 ~~~~i~~a~~~i~~~i~~~~~I~i~---G~G~S~~~A 48 (177)
T cd05006 15 LAEAIEQAAQLLAEALLNGGKILIC---GNGGSAADA 48 (177)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---eCcHHHHHH
Confidence 4578999999999988877888775 566666554
No 112
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=35.71 E-value=39 Score=23.97 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=12.6
Q ss_pred CcEEEEcCCCCChHHH
Q 026154 173 RPVFVHCAYGHGRSVA 188 (242)
Q Consensus 173 ~~VlVHC~~G~~RS~~ 188 (242)
++|++.|..|.|=|.+
T Consensus 1 ~kilvvCg~G~gtS~m 16 (87)
T cd05567 1 KKIVFACDAGMGSSAM 16 (87)
T ss_pred CEEEEECCCCccHHHH
Confidence 3699999999986544
No 113
>PF01964 ThiC: ThiC family; InterPro: IPR002817 ThiC is found within the thiamin biosynthesis operon. ThiC is involved in thiamin biosynthesis []. The precise catalytic function of ThiC is still not known. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis.; GO: 0009228 thiamine biosynthetic process; PDB: 3EPO_A 3EPN_B 3EPM_B.
Probab=35.45 E-value=91 Score=29.22 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCCCcEEEEcCCCCCCc------ccCCCceEEEEEcCCCC-----CCChhHHHHHHHHHHHHhhCC-CcEEEEcCC----
Q 026154 118 PPGNPAIIDCTCEFPKL------REFEGHSYLCVPTWDTR-----SPQPGEIESAVKWGSRKRAQN-RPVFVHCAY---- 181 (242)
Q Consensus 118 ~~gi~~Vi~l~~e~~~~------~~~~g~~y~~iPi~D~~-----~p~~~~l~~av~~i~~~~~~~-~~VlVHC~~---- 181 (242)
+.|-.+|.||+..-+-. .....+..-.+|+.+.. .+..-.-+...+.|+++.++| .=+-|||..
T Consensus 87 ~~GADtvMDLStggdl~~iR~~il~~~~vpvGTVPiYqa~~~~~~~~~~~t~d~~~~~ie~qa~~GVDfmtiH~git~~~ 166 (420)
T PF01964_consen 87 KAGADTVMDLSTGGDLDEIRRAILENSPVPVGTVPIYQAAIRKGGSIVDMTEDDFFDVIEKQAKDGVDFMTIHCGITRET 166 (420)
T ss_dssp HTT-SEEEE---STTHHHHHHHHHHT-SS-EEE-HHHHHHHHTTT-GGG--HHHHHHHHHHHHHHT--EEEE-TT--GGG
T ss_pred HhCCCEEEEcCCCCCHHHHHHHHHHhCCCccccchHHHHHHHhCCChhhCCHHHHHHHHHHHHHcCCCEEEEccchhHHH
Confidence 46999999998644322 12234556667765522 111112456666777887765 357899951
Q ss_pred ------------CCChHHHHHHHHHHHcCCCCCH-----HHHHHHHHh----------hCCCCCCCHHHHHHHHHH
Q 026154 182 ------------GHGRSVAVACALLVALSIVEDW-----REAEKLIKK----------RRPNIQMNALQRKALEEW 230 (242)
Q Consensus 182 ------------G~~RS~~vv~ayLm~~~~~~~~-----~eA~~~vr~----------~Rp~i~~n~~~~~~L~~~ 230 (242)
=+||.|+++++|+++.+. .++ ++-++..|+ .||+..-+..-..|++++
T Consensus 167 ~~~~~~~~R~~giVSRGGs~l~~WM~~n~~-ENPly~~fD~lLeI~k~yDVtLSLGDglRPG~i~Da~D~aQi~EL 241 (420)
T PF01964_consen 167 LERLKKSGRIMGIVSRGGSILAAWMLHNGK-ENPLYEHFDRLLEIAKEYDVTLSLGDGLRPGCIADATDRAQIQEL 241 (420)
T ss_dssp GGGGT--TSSS----HHHHHHHHHHHHHTS---HHHHTHHHHHHHHTTTT-EEEE--TT--SSGGGTT-HHHHHHH
T ss_pred HHHHhhhccccCccccchHHHHHHHHhcCC-cCcHHHhHHHHHHHHHHhCeeEecccccCCCCcCCCCcHHHHHHH
Confidence 269999999999999876 444 566666654 488777665555555554
No 114
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.26 E-value=1.4e+02 Score=26.54 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCCC----hHHHHHHHHHHHcCCCCCHHHHHHHHHhhCCC----CCCCHHHHHHHHH
Q 026154 158 IESAVKWGSRKRAQNRPVFVHCAYGHG----RSVAVACALLVALSIVEDWREAEKLIKKRRPN----IQMNALQRKALEE 229 (242)
Q Consensus 158 l~~av~~i~~~~~~~~~VlVHC~~G~~----RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~----i~~n~~~~~~L~~ 229 (242)
.+...+.+.+.+..||+++.||-.+.. +....+.-|.---+..++..+..+.+++..-. -...++..+.|+.
T Consensus 155 ~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 155 YDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCCCcCCCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 556777778888999999999998887 77777777776666555667777766655432 2344677888888
Q ss_pred HHHHHhcc
Q 026154 230 WSKHRLST 237 (242)
Q Consensus 230 ~~~~~~~~ 237 (242)
|...+.+.
T Consensus 235 W~~~f~~~ 242 (283)
T COG2230 235 WRERFEAN 242 (283)
T ss_pred HHHHHHHH
Confidence 88776654
No 115
>KOG3249 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.16 E-value=1.6e+02 Score=24.12 Aligned_cols=50 Identities=28% Similarity=0.399 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCcccccCCCCCCchHHH
Q 026154 12 KATVHFIVFVFLRSLGFTLLSLPFLYASLVSLLIALASHPSINLPMLLGKKSDGSFPIWS 71 (242)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~ 71 (242)
.-.+..++-+.|.++.. .+. +.++.|+.++.|.--+| -+|+..|.++.++
T Consensus 105 ~~~v~vllW~vL~~ia~-~l~-----fGlvff~lSlf~~iy~n----~~~rk~gEmSAYS 154 (181)
T KOG3249|consen 105 KMWVIVLLWFVLAPIAH-RLD-----FGLVFFLLSLFSIIYLN----TGKRKRGEMSAYS 154 (181)
T ss_pred hHHHHHHHHHHHHHHHH-HHH-----hhHHHHHHHHHHHheec----CCCCCCCccchhh
Confidence 33444444444444444 333 34444444444431144 6789999988765
No 116
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=34.82 E-value=1.7e+02 Score=27.58 Aligned_cols=114 Identities=14% Similarity=0.092 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCcc------cCCCceEEEEEcCCCCC------CChh--HHHHHHHHHHHHhhCC-CcEEEEcC--
Q 026154 118 PPGNPAIIDCTCEFPKLR------EFEGHSYLCVPTWDTRS------PQPG--EIESAVKWGSRKRAQN-RPVFVHCA-- 180 (242)
Q Consensus 118 ~~gi~~Vi~l~~e~~~~~------~~~g~~y~~iPi~D~~~------p~~~--~l~~av~~i~~~~~~~-~~VlVHC~-- 180 (242)
+.|-.+|.||+.--.-.. ....+..=.+|+.+... -+.. .-+...+.|+++.++| .=+-|||.
T Consensus 88 ~~GADtiMDLStggdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~k~~~~~~mt~d~~~~~ie~qa~~GVDfmTiHcGi~ 167 (431)
T PRK13352 88 KYGADTIMDLSTGGDLDEIRRAIIEASPVPVGTVPIYQAAVEAARKYGSVVDMTEDDLFDVIEKQAKDGVDFMTIHCGVT 167 (431)
T ss_pred HcCCCeEeeccCCCCHHHHHHHHHHcCCCCCcChhHHHHHHHHHhcCCChhhCCHHHHHHHHHHHHHhCCCEEEEccchh
Confidence 469999999986433211 11122233444433100 0111 1345566677777775 34789995
Q ss_pred --------------CCCChHHHHHHHHHHHcCCCCCH----HHHHHHHHh----------hCCCCCCCHHHHHHHHHHH
Q 026154 181 --------------YGHGRSVAVACALLVALSIVEDW----REAEKLIKK----------RRPNIQMNALQRKALEEWS 231 (242)
Q Consensus 181 --------------~G~~RS~~vv~ayLm~~~~~~~~----~eA~~~vr~----------~Rp~i~~n~~~~~~L~~~~ 231 (242)
.=+||-|++.++|++..+.+..+ ++-++..++ .||+..-...-..|++++.
T Consensus 168 ~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~Da~D~aQi~El~ 246 (431)
T PRK13352 168 RETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTLSLGDGLRPGCIADATDRAQIQELI 246 (431)
T ss_pred HHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHH
Confidence 12689999999999988764322 555555554 4888777666566666553
No 117
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=32.96 E-value=2.1e+02 Score=24.78 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=29.4
Q ss_pred HHHHHHHHhhccCCCCcccccCCCCCCchHHHHHHHhhhhHHHHHHHHHHHhhcCCCCCcee
Q 026154 40 LVSLLIALASHPSINLPMLLGKKSDGSFPIWSIILFSPYIYFVRIFSVLRRLNSGEEPYSEV 101 (242)
Q Consensus 40 ~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~~~l~~P~~~~~~~~~~~~~~~~~~p~~~~I 101 (242)
+.-...+++|- - -+..+|..+ ++.+++..|-++ +|+.|.++|.-+++
T Consensus 176 llPvvagisYE-i---ir~~~~~~~----~l~~~l~~PGl~-------lQ~lTT~EPdd~ql 222 (236)
T PF07136_consen 176 LLPVVAGISYE-I---IRWAGRSDN----PLVRILSAPGLW-------LQRLTTREPDDDQL 222 (236)
T ss_pred HHHHHHHHHHH-H---HHHhccCcc----HHHHHHHhHHHH-------HHHHHcCCCCHHHH
Confidence 33444567773 1 234445444 789999999774 45678888876554
No 118
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=32.69 E-value=2e+02 Score=26.98 Aligned_cols=113 Identities=12% Similarity=0.083 Sum_probs=67.5
Q ss_pred CCCCcEEEEcCCCCCCcc------cCCCceEEEEEcCCCCC---CChh--HHHHHHHHHHHHhhCC-CcEEEEcC-----
Q 026154 118 PPGNPAIIDCTCEFPKLR------EFEGHSYLCVPTWDTRS---PQPG--EIESAVKWGSRKRAQN-RPVFVHCA----- 180 (242)
Q Consensus 118 ~~gi~~Vi~l~~e~~~~~------~~~g~~y~~iPi~D~~~---p~~~--~l~~av~~i~~~~~~~-~~VlVHC~----- 180 (242)
+.|-.+|.||+.--.-.. ....+..=.+|+.+... -+.. .-+...+.|+++.++| .=+-|||.
T Consensus 88 ~~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~ 167 (423)
T TIGR00190 88 KYGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAKDGVDFMTIHAGVLLEY 167 (423)
T ss_pred HcCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHHhCCCEEEEccchhHHH
Confidence 469999999986433211 11122233344433100 0121 1455666777877775 34788995
Q ss_pred ------C-----CCChHHHHHHHHHHHcCCCCCH----HHHHHHHHh----------hCCCCCCCHHHHHHHHHH
Q 026154 181 ------Y-----GHGRSVAVACALLVALSIVEDW----REAEKLIKK----------RRPNIQMNALQRKALEEW 230 (242)
Q Consensus 181 ------~-----G~~RS~~vv~ayLm~~~~~~~~----~eA~~~vr~----------~Rp~i~~n~~~~~~L~~~ 230 (242)
. =+||-|++.++|++..+.+..+ ++-++..|+ .||+..-...-..|++++
T Consensus 168 ~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~lLeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El 242 (423)
T TIGR00190 168 VERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYILEIAKEYDVTLSLGDGLRPGCIADATDRAQISEL 242 (423)
T ss_pred HHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeeeeccCCcCCCccccCCcHHHHHHH
Confidence 1 2589999999999998864333 455555553 488877776666666655
No 119
>PRK15043 transcriptional regulator MirA; Provisional
Probab=32.40 E-value=1e+02 Score=26.83 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHh-hCCCcEEEEcCCCCChHHHHHHHHHHHcCCCCCHHHHHHHHHhhCC------------CCCCCHHHHHHHHHHH
Q 026154 165 GSRKR-AQNRPVFVHCAYGHGRSVAVACALLVALSIVEDWREAEKLIKKRRP------------NIQMNALQRKALEEWS 231 (242)
Q Consensus 165 i~~~~-~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~~~~eA~~~vr~~Rp------------~i~~n~~~~~~L~~~~ 231 (242)
++..+ +.|+++|+-|..|..+...-..|++....+. .++=--.-+..-|| ...+++.|.++|..|.
T Consensus 154 l~~~rk~~~~~~Ll~~~~~~~~~~lwl~a~~l~~~g~-~v~vl~~~~~~~~pelf~~~~~~~~~~~~~t~~q~~~~~~w~ 232 (243)
T PRK15043 154 LASARKKQGKDALVVGWNIHDTTRLWLEGWIASQQGW-RIDVLAHSLNQLRPELFEGRTLLVWCGENRTSAQQQQLTSWQ 232 (243)
T ss_pred HHHHhccCCCCEEEEeCCCCCcHHHHHHHHHHhcCCc-eEEEeCCcccccChhhcCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 44444 4466799999999999999999988876652 21100001122333 3567899999999998
Q ss_pred HHH
Q 026154 232 KHR 234 (242)
Q Consensus 232 ~~~ 234 (242)
++-
T Consensus 233 ~~g 235 (243)
T PRK15043 233 EQG 235 (243)
T ss_pred HhC
Confidence 764
No 120
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=32.17 E-value=1.6e+02 Score=22.44 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCcccccCCCCCCchHHHHHHHhhhhHHHHHHHH
Q 026154 30 LLSLPFLYASLVSLLIALASHPSINLPMLLGKKSDGSFPIWSIILFSPYIYFVRIFSV 87 (242)
Q Consensus 30 ~~~~~~l~~~~~~~~v~~ay~~~~~~~~~f~K~~~G~~~~~~~~l~~P~~~~~~~~~~ 87 (242)
++.|.++|.+++.|.+.=-. +...+.+|+---.=..=....+...=|+ .-++|-.
T Consensus 40 ll~W~~~wv~vlifal~P~f--s~~Ia~ilGlGRGlDaL~vitI~~ayyL-lfrlYl~ 94 (121)
T COG2456 40 LLFWEAFWVFVLIFALFPEF--SGEIAEILGLGRGLDALFVITIGLAYYL-LFRLYLD 94 (121)
T ss_pred hHHHHHHHHHHHHHHhcchH--HHHHHHHhccccccchhhHHHHHHHHHH-HHHHHHH
Confidence 78899999999886654332 1233555554322222233444443333 3345443
No 121
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.65 E-value=1.3e+02 Score=23.21 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHHHHHhc
Q 026154 205 EAEKLIKKRRPNIQMNALQRKALEEWSKHRLS 236 (242)
Q Consensus 205 eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~~ 236 (242)
+.+..+.++.| +.+...+++.|-+|.-....
T Consensus 73 ~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 73 KLVDFFSRKYP-IPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHhcC
Confidence 33556677888 89999999999999654444
No 122
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=31.41 E-value=53 Score=28.73 Aligned_cols=26 Identities=35% Similarity=0.171 Sum_probs=18.7
Q ss_pred CCCCChHHHHHHHHHHHcCCCCCHHHHHH
Q 026154 180 AYGHGRSVAVACALLVALSIVEDWREAEK 208 (242)
Q Consensus 180 ~~G~~RS~~vv~ayLm~~~~~~~~~eA~~ 208 (242)
--|.||||+.+++-++.- .+.++|.+
T Consensus 159 ~PGiSRSG~Ti~~~l~~G---~~r~~A~~ 184 (259)
T PF02673_consen 159 IPGISRSGATITAGLLLG---LDREEAAR 184 (259)
T ss_pred CCCcChHHHHHHHHHHCC---CCHHHHHH
Confidence 459999999998877653 35666544
No 123
>PRK15087 hemolysin; Provisional
Probab=30.50 E-value=1.1e+02 Score=25.94 Aligned_cols=51 Identities=10% Similarity=0.039 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC--CCcccccCCCCCCchHHHHHHHhhhhH
Q 026154 30 LLSLPFLYASLVSLLIALASHPSI--NLPMLLGKKSDGSFPIWSIILFSPYIY 80 (242)
Q Consensus 30 ~~~~~~l~~~~~~~~v~~ay~~~~--~~~~~f~K~~~G~~~~~~~~l~~P~~~ 80 (242)
.....++-..+.++++|..||..- +...+|+|=++..|-....-.+.|+.+
T Consensus 52 ~~~~vy~~s~~~l~~~StlYH~~~~~~~~~~~~rlDh~~I~llIaGsytP~~~ 104 (219)
T PRK15087 52 TSYSLYGGSMILLFLASTLYHAIPHQRAKRWLKKFDHCAIYLLIAGTYTPFLL 104 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHccHHHHHHHHHHhhHHHHH
Confidence 444677888888999999999321 122466665554444444444445443
No 124
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=69 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhCCCcEEEEcCCCC
Q 026154 158 IESAVKWGSRKRAQNRPVFVHCAYGH 183 (242)
Q Consensus 158 l~~av~~i~~~~~~~~~VlVHC~~G~ 183 (242)
-..+++.|.+..++.+||+.|=..|-
T Consensus 10 T~aAl~Li~~l~~~hgpvmFHQSGGC 35 (116)
T COG3564 10 TPAALDLIAELQAEHGPVMFHQSGGC 35 (116)
T ss_pred CHHHHHHHHHHHHhcCCEEEeccCCc
Confidence 35678888899899999999966654
No 125
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=29.56 E-value=1.5e+02 Score=21.33 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=16.9
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
..+++++|+|..|. ||.. ++..|-..
T Consensus 56 ~~~~~ivv~c~~g~-~s~~-a~~~L~~~ 81 (108)
T PRK00162 56 DFDTPVMVMCYHGN-SSQG-AAQYLLQQ 81 (108)
T ss_pred CCCCCEEEEeCCCC-CHHH-HHHHHHHC
Confidence 45689999999886 6643 33344443
No 126
>PRK02947 hypothetical protein; Provisional
Probab=29.07 E-value=98 Score=26.61 Aligned_cols=35 Identities=26% Similarity=0.278 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHH
Q 026154 154 QPGEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVAC 191 (242)
Q Consensus 154 ~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ 191 (242)
+.+.++++++.+.+...++++|++. |.|.|..++.
T Consensus 22 ~~e~i~~aa~lla~~i~~a~~I~i~---G~G~S~~vA~ 56 (246)
T PRK02947 22 QAEAIEKAADLIADSIRNGGLIYVF---GTGHSHILAE 56 (246)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEE---cCcHHHHHHH
Confidence 3467999999999999988999886 6666666543
No 127
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=28.48 E-value=1.4e+02 Score=22.75 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHHcCCCC-------CH-HHHHHHHHhhCCCC-------CCC
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVALSIVE-------DW-REAEKLIKKRRPNI-------QMN 220 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~~~~~~-------~~-~eA~~~vr~~Rp~i-------~~n 220 (242)
..+.+..+.+++..+.+.||+|..-.|-|++-. |-++-...... +. +...+.+.+.+.+. .++
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~--A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLL--ARALHRYSGRANGPFIVIDCASLPAELLEQAKGGTLYLKNIDRLS 82 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHH--HHCCHHTTTTCCS-CCCCCHHCTCHHHHHHCTTSEEEEECGCCS-
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHH--HHHHHhhcCccCCCeEEechhhCcHHHHHHcCCCEEEECChHHCC
Confidence 446777778888888889999999999999974 34443332210 00 01133444444422 455
Q ss_pred HHHHHHHHHHHHH
Q 026154 221 ALQRKALEEWSKH 233 (242)
Q Consensus 221 ~~~~~~L~~~~~~ 233 (242)
+...+.|.++-+.
T Consensus 83 ~~~Q~~L~~~l~~ 95 (138)
T PF14532_consen 83 PEAQRRLLDLLKR 95 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6777777766554
No 128
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=28.27 E-value=50 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.1
Q ss_pred CcEEEEcCCCCChH
Q 026154 173 RPVFVHCAYGHGRS 186 (242)
Q Consensus 173 ~~VlVHC~~G~~RS 186 (242)
++|++.|.+|.+=|
T Consensus 2 kkILlvCg~G~STS 15 (104)
T PRK09590 2 KKALIICAAGMSSS 15 (104)
T ss_pred cEEEEECCCchHHH
Confidence 36999999999433
No 129
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=27.85 E-value=57 Score=29.78 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=14.6
Q ss_pred hhCCCcEEEEcCCCCChHH
Q 026154 169 RAQNRPVFVHCAYGHGRSV 187 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~ 187 (242)
...|..||.||.+|..+++
T Consensus 145 I~~g~~ILThc~sg~lat~ 163 (339)
T PRK06036 145 LEDGDTVLTHCNAGRLACV 163 (339)
T ss_pred ccCCCEEEEecCCcccccc
Confidence 3457789999999977653
No 130
>TIGR00753 undec_PP_bacA undecaprenyl-diphosphatase UppP. This is a family of small, highly hydrophobic proteins. Overexpression of this protein in Escherichia coli is associated with bacitracin resistance, and the protein was originally proposed to be an undecaprenol kinase and called bacA. It is now known to be an undecaprenyl pyrophosphate phosphatase (EC 3.6.1.27) and is renamed UppP.
Probab=27.30 E-value=62 Score=28.28 Aligned_cols=25 Identities=20% Similarity=0.069 Sum_probs=17.4
Q ss_pred CCCChHHHHHHHHHHHcCCCCCHHHHHH
Q 026154 181 YGHGRSVAVACALLVALSIVEDWREAEK 208 (242)
Q Consensus 181 ~G~~RS~~vv~ayLm~~~~~~~~~eA~~ 208 (242)
-|.||||+.+++-++.. .+-++|.+
T Consensus 160 PGiSRSG~TI~a~l~~G---~~r~~Aa~ 184 (255)
T TIGR00753 160 PGVSRSGSTISGGLFIG---LNRKAAAE 184 (255)
T ss_pred cCCCCchHHHHHHHHcC---CCHHHHHH
Confidence 49999998888877653 34555543
No 131
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=27.20 E-value=1.6e+02 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=17.8
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
..+.+|+|+|..| ..+..++..|-..+
T Consensus 47 ~~~~~vVv~c~~g--~~a~~aa~~L~~~G 73 (145)
T cd01535 47 PAAERYVLTCGSS--LLARFAAADLAALT 73 (145)
T ss_pred CCCCCEEEEeCCC--hHHHHHHHHHHHcC
Confidence 3467999999986 34455566665444
No 132
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=26.75 E-value=2.7e+02 Score=20.72 Aligned_cols=89 Identities=12% Similarity=0.034 Sum_probs=48.0
Q ss_pred CceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCC----hHHHHHHHHHHHcCCCCCHHHHHHHHHhhC
Q 026154 139 GHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHG----RSVAVACALLVALSIVEDWREAEKLIKKRR 214 (242)
Q Consensus 139 g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~----RS~~vv~ayLm~~~~~~~~~eA~~~vr~~R 214 (242)
..-.+..|+.....++...+...++.+.+..-+|+++.|-+..|.+ .+.-.+...|-..+. .-+.+.+ +
T Consensus 47 d~iilgspty~~g~~p~~~~~~f~~~l~~~~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~-~~v~~~~------~ 119 (140)
T TIGR01753 47 DAVLLGCSTWGDEDLEQDDFEPFFEELEDIDLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGA-TIIAEGL------K 119 (140)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHhhhCCCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCC-EEecCCe------e
Confidence 4457777886654332234455555554433457889998887754 222233333322221 1111111 1
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 026154 215 PNIQMNALQRKALEEWSKHR 234 (242)
Q Consensus 215 p~i~~n~~~~~~L~~~~~~~ 234 (242)
-.-.|+....+.+++|-+++
T Consensus 120 ~~~~p~~~~~~~~~~~~~~l 139 (140)
T TIGR01753 120 VDGDPEEEDLDKCREFAKDL 139 (140)
T ss_pred eecCCCHHHHHHHHHHHHHh
Confidence 12467888999999997764
No 133
>PRK05568 flavodoxin; Provisional
Probab=26.71 E-value=2.8e+02 Score=20.93 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=54.9
Q ss_pred CCc-EEEEcCCCCCCcccCCCceEEEEEcCCCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCCC--hHHHHHHHHHHH
Q 026154 120 GNP-AIIDCTCEFPKLREFEGHSYLCVPTWDTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGHG--RSVAVACALLVA 196 (242)
Q Consensus 120 gi~-~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~~--RS~~vv~ayLm~ 196 (242)
|+. .++++...........+.-.+-.|+.....+....+...++.+... .+++++.+-|..|.+ .+.-.+...+ .
T Consensus 30 g~~v~~~~~~~~~~~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~~~~~-~~~k~~~~f~t~G~~~~~~~~~~~~~l-~ 107 (142)
T PRK05568 30 GAEVKLLNVSEASVDDVKGADVVALGSPAMGDEVLEEGEMEPFVESISSL-VKGKKLVLFGSYGWGDGEWMRDWVERM-E 107 (142)
T ss_pred CCeEEEEECCCCCHHHHHhCCEEEEECCccCcccccchhHHHHHHHhhhh-hCCCEEEEEEccCCCCChHHHHHHHHH-H
Confidence 443 4566654322222233455667777765543223344444433322 357889998888874 3333333333 3
Q ss_pred cCCCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHh
Q 026154 197 LSIVEDWREAEKLIKKRRPNIQMNALQRKALEEWSKHRL 235 (242)
Q Consensus 197 ~~~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~~~~~~ 235 (242)
..+..-..+.+ +- .-.|+++..++.++|-+++.
T Consensus 108 ~~g~~~~~~~~---~~---~~~p~~~~l~~~~~~g~~l~ 140 (142)
T PRK05568 108 GYGANLVNEGL---IV---NNTPEGEGIEKCKALGEALA 140 (142)
T ss_pred HCCCEEeCCcE---EE---ecCCCHHHHHHHHHHHHHHH
Confidence 22111111111 11 12578999999999887764
No 134
>COG3402 Uncharacterized conserved protein [Function unknown]
Probab=26.55 E-value=1.3e+02 Score=24.34 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHHHHHHHHHhh
Q 026154 7 FLISLKATVHFIVFVFLRSLGFTLLS----LPFLYASLVSLLIALAS 49 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~v~~ay 49 (242)
...++.+++.+++++..+.+++ ++. |++.....+..+++..+
T Consensus 19 ~~~~i~~~l~Ll~av~~~~~~~-~~~~~~~w~~~a~~av~l~~~vv~ 64 (161)
T COG3402 19 VQEWIPIALVLLIAVAAGVLLY-FVGLDPNWSSVAAVAVILLAAVVT 64 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-eeccCCccHHHHHHHHHHHHHHHH
Confidence 3467777777777777777766 555 44444433433333333
No 135
>PRK00281 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=26.36 E-value=67 Score=28.29 Aligned_cols=25 Identities=24% Similarity=0.073 Sum_probs=17.7
Q ss_pred CCCChHHHHHHHHHHHcCCCCCHHHHHH
Q 026154 181 YGHGRSVAVACALLVALSIVEDWREAEK 208 (242)
Q Consensus 181 ~G~~RS~~vv~ayLm~~~~~~~~~eA~~ 208 (242)
-|.||||+.+++-++.- .+-++|.+
T Consensus 164 PGiSRSG~TI~~~l~~G---~~r~~Aa~ 188 (268)
T PRK00281 164 PGTSRSGATISGGLLLG---LSREAAAE 188 (268)
T ss_pred CCCCccHHHHHHHHHcC---CCHHHHHH
Confidence 49999998888877652 35566543
No 136
>PRK12554 undecaprenyl pyrophosphate phosphatase; Reviewed
Probab=26.36 E-value=65 Score=28.49 Aligned_cols=25 Identities=28% Similarity=0.073 Sum_probs=17.5
Q ss_pred CCCChHHHHHHHHHHHcCCCCCHHHHHH
Q 026154 181 YGHGRSVAVACALLVALSIVEDWREAEK 208 (242)
Q Consensus 181 ~G~~RS~~vv~ayLm~~~~~~~~~eA~~ 208 (242)
-|.||||+.+++-++.- .+-++|.+
T Consensus 166 PGiSRSG~TI~a~l~~G---~~r~~Aa~ 190 (276)
T PRK12554 166 PGVSRSGATIIAGLLLG---LTREAAAR 190 (276)
T ss_pred cCCCCchHHHHHHHHcC---CCHHHHHH
Confidence 49999998888877652 35566543
No 137
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=26.23 E-value=2e+02 Score=19.88 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=16.7
Q ss_pred hhCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 169 RAQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
...+++|+++|..|. ||... +..|.+.
T Consensus 48 ~~~~~~vvl~c~~g~-~a~~~-a~~L~~~ 74 (90)
T cd01524 48 LPKDKEIIVYCAVGL-RGYIA-ARILTQN 74 (90)
T ss_pred cCCCCcEEEEcCCCh-hHHHH-HHHHHHC
Confidence 355689999999874 54443 3344333
No 138
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=26.18 E-value=1.1e+02 Score=30.34 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=20.2
Q ss_pred ChhHHHHHHHHHHHH-hhCCCcEEEEcCCCCChHHHH
Q 026154 154 QPGEIESAVKWGSRK-RAQNRPVFVHCAYGHGRSVAV 189 (242)
Q Consensus 154 ~~~~l~~av~~i~~~-~~~~~~VlVHC~~G~~RS~~v 189 (242)
+.+++++..+ +. ...+++|.++|..|. ||+.+
T Consensus 207 ~~~el~~~~~---~~Gi~~~~~VVvYC~sG~-rAa~~ 239 (610)
T PRK09629 207 IRQDMPEILR---DLGITPDKEVITHCQTHH-RSGFT 239 (610)
T ss_pred CHHHHHHHHH---HcCCCCCCCEEEECCCCh-HHHHH
Confidence 3345554432 32 355789999999986 66654
No 139
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=26.17 E-value=1.3e+02 Score=25.77 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHhhccC---CCCcccccCCCC
Q 026154 5 ISFLISLKATVHFIVFVFLRS-LGFTLLSLPFLYASLVSLLIALASHPS---INLPMLLGKKSD 64 (242)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~v~~ay~~~---~~~~~~f~K~~~ 64 (242)
++.+.++.++.++.......+ ..-......++-..+.++++|..||.. -.....|+|=++
T Consensus 30 vGail~i~~l~~l~~~a~~~~~~~~~~~~~iy~~sl~~l~~~St~YH~~~~~~~~k~~~rk~DH 93 (226)
T COG1272 30 IGAILAIVGLVLLLVYALITGSALAVIVFSIYGLSLFLLFLVSTLYHSIPNGQKAKAILRKFDH 93 (226)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhHhhhhhHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHccH
Confidence 445555555555554444432 223355667778888999999999922 122345666554
No 140
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=26.17 E-value=43 Score=23.45 Aligned_cols=16 Identities=38% Similarity=0.698 Sum_probs=12.6
Q ss_pred cEEEEcCCCCChHHHH
Q 026154 174 PVFVHCAYGHGRSVAV 189 (242)
Q Consensus 174 ~VlVHC~~G~~RS~~v 189 (242)
+|++-|.+|.|=|-++
T Consensus 1 kIlvvC~~Gi~TS~~~ 16 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMV 16 (90)
T ss_dssp EEEEEESSSSHHHHHH
T ss_pred CEEEECCChHHHHHHH
Confidence 5899999999766544
No 141
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=25.54 E-value=1.2e+02 Score=28.04 Aligned_cols=20 Identities=30% Similarity=0.595 Sum_probs=15.4
Q ss_pred HHHHHHHHH----HHHHHHHHhhc
Q 026154 31 LSLPFLYAS----LVSLLIALASH 50 (242)
Q Consensus 31 ~~~~~l~~~----~~~~~v~~ay~ 50 (242)
+.+|++|.. ...++|+++|+
T Consensus 34 l~~p~~~~~~~~r~~a~~~~~~y~ 57 (388)
T PRK13825 34 LAFPVLWANSPSRLAAALVSAGYF 57 (388)
T ss_pred HHHHHHHhhCccHHHHHHHHHHHH
Confidence 678889864 56778888886
No 142
>cd01317 DHOase_IIa Dihydroorotase (DHOase), subgroup IIa; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This subgroup also contains proteins that lack the active site, like unc-33, a C.elegans protein involved in axon growth.
Probab=25.44 E-value=3.3e+02 Score=24.64 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=12.8
Q ss_pred HHHHHHhhCCCcEEEEcC
Q 026154 163 KWGSRKRAQNRPVFVHCA 180 (242)
Q Consensus 163 ~~i~~~~~~~~~VlVHC~ 180 (242)
+.++...+.|.+|.|||.
T Consensus 124 ~~~~~~~~~g~~v~~H~E 141 (374)
T cd01317 124 RALEYAAMLDLPIIVHPE 141 (374)
T ss_pred HHHHHHHhcCCeEEEecC
Confidence 334455566889999995
No 143
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=25.16 E-value=1e+02 Score=29.43 Aligned_cols=27 Identities=19% Similarity=0.205 Sum_probs=18.7
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHcC
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVALS 198 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~~ 198 (242)
.++++++++|..|. ||... +.+|-..|
T Consensus 447 ~~~~~iivyC~~G~-rS~~a-a~~L~~~G 473 (482)
T PRK01269 447 DQSKTYLLYCDRGV-MSRLQ-ALYLREQG 473 (482)
T ss_pred CCCCeEEEECCCCH-HHHHH-HHHHHHcC
Confidence 45689999999997 77655 44454433
No 144
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=24.60 E-value=1.8e+02 Score=26.18 Aligned_cols=58 Identities=12% Similarity=0.064 Sum_probs=37.9
Q ss_pred hCCCcEEEEcCCCCC-hHHHHHHHHHHH-cC--CCCCHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q 026154 170 AQNRPVFVHCAYGHG-RSVAVACALLVA-LS--IVEDWREAEKLIKKRRPNIQMNALQRKALEEW 230 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~-RS~~vv~ayLm~-~~--~~~~~~eA~~~vr~~Rp~i~~n~~~~~~L~~~ 230 (242)
..|-||+.|+.-|.+ +|++. -++. .+ ...+++++.+.+++......+-+.+-..++..
T Consensus 97 ~~G~~V~kHG~r~~~s~~Gs~---d~le~LGi~~~~s~~~~~~~l~~~g~~f~~~~~~~P~~~~l 158 (330)
T TIGR01245 97 AAGVKVAKHGNRSVSSKSGSA---DVLEALGVNLDLGPEKVARSLEETGIGFLFAPLYHPAMKHV 158 (330)
T ss_pred hCCCEEEEeCCCCCCCCccHH---HHHHHcCCCCCCCHHHHHHHHHHhCcEEeechhhCHHHHHH
Confidence 447899999998877 77752 2322 12 23578999999998776555545544444433
No 145
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=24.41 E-value=3.1e+02 Score=21.34 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 026154 7 FLISLKATVHFIVFVFLRSLGFTLLSLPFLYASLVS 42 (242)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (242)
.+++..+++.+..+...-..|. +..+||.-.-+.+
T Consensus 14 ~~~~~~~~~~~~~a~~f~~~Ga-W~Vl~F~glev~~ 48 (140)
T PF10003_consen 14 IFIAILAAVSLIIAIAFLLMGA-WPVLPFAGLEVLA 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHH
Confidence 4555666666666666666666 5666665444333
No 146
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=23.54 E-value=1.4e+02 Score=26.03 Aligned_cols=20 Identities=15% Similarity=-0.064 Sum_probs=13.8
Q ss_pred hhCCCcEEEEcCCCCChHHHH
Q 026154 169 RAQNRPVFVHCAYGHGRSVAV 189 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~~RS~~v 189 (242)
..++.+|+|+|..|. ++++.
T Consensus 84 i~~d~~VVvyc~~~~-~~a~~ 103 (281)
T PRK11493 84 VNQDKHLVVYDEGNL-FSAPR 103 (281)
T ss_pred CCCCCEEEEECCCCC-chHHH
Confidence 455689999998764 54443
No 147
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=23.43 E-value=1.1e+02 Score=26.62 Aligned_cols=57 Identities=18% Similarity=0.100 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHH-H----cCCCCCHHHHHHHHHh
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLV-A----LSIVEDWREAEKLIKK 212 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm-~----~~~~~~~~eA~~~vr~ 212 (242)
.|.+-+.++++-+.+.+.||.|||+.-....-.++--+.. . ..=..|.++|.+.+..
T Consensus 109 ~Q~~~F~~ql~lA~~~~lPviIH~R~A~~d~~~iL~~~~~~~~gi~HcFsGs~e~a~~~~d~ 170 (256)
T COG0084 109 RQEEVFEAQLELAKELNLPVIIHTRDAHEDTLEILKEEGAPVGGVLHCFSGSAEEARKLLDL 170 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEccccHHHHHHHHHhcCCCCCEEEEccCCCHHHHHHHHHc
Confidence 3445555567777777899999997765555554443321 0 0001366777777653
No 148
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.95 E-value=2.1e+02 Score=23.51 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACA 192 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~a 192 (242)
+.++++++.+.+...++++|++. |.|.|+.++.-
T Consensus 27 ~~i~~a~~~~~~~l~~a~~I~i~---G~G~S~~~A~~ 60 (197)
T PRK13936 27 PPIAQAVELMVQALLNEGKILAC---GNGGSAADAQH 60 (197)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEE---eCcHhHHHHHH
Confidence 45778888888888888998886 77777765543
No 149
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=22.57 E-value=1.3e+02 Score=20.12 Aligned_cols=26 Identities=38% Similarity=0.630 Sum_probs=17.0
Q ss_pred hCCCcEEEEcCCCCChHHHHHHHHHHHc
Q 026154 170 AQNRPVFVHCAYGHGRSVAVACALLVAL 197 (242)
Q Consensus 170 ~~~~~VlVHC~~G~~RS~~vv~ayLm~~ 197 (242)
.++.+|+|+|..|. || ..++..|...
T Consensus 48 ~~~~~vv~~c~~~~-~a-~~~~~~l~~~ 73 (89)
T cd00158 48 DKDKPIVVYCRSGN-RS-ARAAKLLRKA 73 (89)
T ss_pred CCCCeEEEEeCCCc-hH-HHHHHHHHHh
Confidence 45689999999864 44 4444555444
No 150
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=22.46 E-value=4.3e+02 Score=24.40 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHH---HHH-----HHcCCCCCHHHHHHHHHhhCCCCCCCHHHH-HH
Q 026154 156 GEIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVAC---ALL-----VALSIVEDWREAEKLIKKRRPNIQMNALQR-KA 226 (242)
Q Consensus 156 ~~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~---ayL-----m~~~~~~~~~eA~~~vr~~Rp~i~~n~~~~-~~ 226 (242)
..+++|..|+.+..+.|..|+.. |.||.+..+= +.+ +.++...-.++|.+..++.-|...|+..+. +.
T Consensus 105 ~nI~~AYrFL~~~yepGD~Iy~F---GFSRGAf~aRVlagmir~vGlls~~~~~~~d~Aw~~y~~r~~~~dp~~~~~tr~ 181 (423)
T COG3673 105 QNIREAYRFLIFNYEPGDEIYAF---GFSRGAFSARVLAGMIRHVGLLSRKHAARIDEAWAHYRQRLSGLDPEGQKVTRF 181 (423)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEe---eccchhHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhcCCCChhhhhhhHh
Confidence 45899999999999999999875 8999765442 222 222322335899999999988888885543 44
Q ss_pred HHHHHHHHhc
Q 026154 227 LEEWSKHRLS 236 (242)
Q Consensus 227 L~~~~~~~~~ 236 (242)
+.++.+....
T Consensus 182 rae~f~~~~~ 191 (423)
T COG3673 182 RAEYFRNICV 191 (423)
T ss_pred hhHHHHhhcc
Confidence 4455554443
No 151
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.22 E-value=1.4e+02 Score=25.80 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=45.6
Q ss_pred CeEEcCCcCccc---cC-CCCCcEEEEcCCCCCCc--------ccCCCceEEEEEcCCCCCC------ChhHHHHHHHHH
Q 026154 104 GLYVGGWPNSMT---TL-PPGNPAIIDCTCEFPKL--------REFEGHSYLCVPTWDTRSP------QPGEIESAVKWG 165 (242)
Q Consensus 104 ~L~lG~~p~~~~---~L-~~gi~~Vi~l~~e~~~~--------~~~~g~~y~~iPi~D~~~p------~~~~l~~av~~i 165 (242)
.+..|++-+..+ .+ +++|+.|||.|..+-.. +...++.|+++-=...... ..++++++++.+
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~~~v~~~~eA~~~l 125 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNWHYVDSYEEAAELL 125 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeEEEeCCHHHHHHHH
Confidence 578888743333 34 47999999999877543 3456788887764333221 125688888877
Q ss_pred HHHhhCCCcEEE
Q 026154 166 SRKRAQNRPVFV 177 (242)
Q Consensus 166 ~~~~~~~~~VlV 177 (242)
.+. .+++|+.
T Consensus 126 ~~~--~~~~ifl 135 (249)
T PF02571_consen 126 KEL--GGGRIFL 135 (249)
T ss_pred hhc--CCCCEEE
Confidence 543 2266766
No 152
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=22.15 E-value=1.6e+02 Score=27.22 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.5
Q ss_pred hhCCCcEEEEcCCCC
Q 026154 169 RAQNRPVFVHCAYGH 183 (242)
Q Consensus 169 ~~~~~~VlVHC~~G~ 183 (242)
...|..||.||.+|.
T Consensus 164 I~dg~~ILThcnsg~ 178 (363)
T PRK05772 164 LNDGDTVLTQCNAGG 178 (363)
T ss_pred cCCCCEEEEecCCcc
Confidence 346778999998873
No 153
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=21.85 E-value=66 Score=23.83 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=13.1
Q ss_pred cEEEEcCCCCChHHHHHHHHH
Q 026154 174 PVFVHCAYGHGRSVAVACALL 194 (242)
Q Consensus 174 ~VlVHC~~G~~RS~~vv~ayL 194 (242)
+|++.|.+| .|.++++--+
T Consensus 2 ~Ill~C~~G--aSSs~la~km 20 (99)
T cd05565 2 NVLVLCAGG--GTSGLLANAL 20 (99)
T ss_pred EEEEECCCC--CCHHHHHHHH
Confidence 489999777 5666665433
No 154
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=21.68 E-value=1.7e+02 Score=29.06 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=33.5
Q ss_pred CCCcEEEEcCCCCCCcccCCCceEEEEEcCCCC-CCChhHHHHHHHHHHH-----Hh---hCCCcEEEEcCCCC
Q 026154 119 PGNPAIIDCTCEFPKLREFEGHSYLCVPTWDTR-SPQPGEIESAVKWGSR-----KR---AQNRPVFVHCAYGH 183 (242)
Q Consensus 119 ~gi~~Vi~l~~e~~~~~~~~g~~y~~iPi~D~~-~p~~~~l~~av~~i~~-----~~---~~~~~VlVHC~~G~ 183 (242)
.+.+.-+++...... ...+-..+.++..|.. .|+.+..-.++..--+ +. ...+.+++||..|-
T Consensus 335 ~~~~~~v~is~p~ah--tgp~pv~vri~s~~~r~g~~~~~sssllss~g~~~~~~wh~P~p~S~sli~HcHGGG 406 (880)
T KOG4388|consen 335 ADPTLTVTISPPLAH--TGPGPVLVRIISYDLREGQDSEESSSLLSSNGQRSLELWHRPAPRSRSLIVHCHGGG 406 (880)
T ss_pred CCCCceeecCChhhc--cCCCCeEEEeechhhhcCCCchhhHHHHhhcCccccccCCCCCCCCceEEEEecCCc
Confidence 356677777654432 2334567788888853 4444433332221100 01 11356999998874
No 155
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=21.22 E-value=3.2e+02 Score=20.81 Aligned_cols=50 Identities=2% Similarity=-0.238 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCCCCc--ccCCCceEEEEEcCCCCCCC------hhHHHHHHHHHHHHh
Q 026154 120 GNPAIIDCTCEFPKL--REFEGHSYLCVPTWDTRSPQ------PGEIESAVKWGSRKR 169 (242)
Q Consensus 120 gi~~Vi~l~~e~~~~--~~~~g~~y~~iPi~D~~~p~------~~~l~~av~~i~~~~ 169 (242)
....||.+|.+.... ..+....+.++++.|-..-+ .+.++++.+.|++..
T Consensus 69 ~~D~vitm~~~~~~~~~~~p~~~~~~~w~i~DP~~~~g~~~~~~~~~~~~~~~I~~~v 126 (129)
T TIGR02691 69 KADLVVTLCGDARDKCPATPPHVKREHWGLDDPARAEGTEEEKWAVFRRVRDEIKERV 126 (129)
T ss_pred cCCEEEEeCchhccCCCccCCCCeEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 577899887542221 12233456677887753333 455777777777654
No 156
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=20.47 E-value=1e+02 Score=28.18 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCCCChhHHHHHHHHHHHHhhCCCcEEEEcCCCC
Q 026154 149 DTRSPQPGEIESAVKWGSRKRAQNRPVFVHCAYGH 183 (242)
Q Consensus 149 D~~~p~~~~l~~av~~i~~~~~~~~~VlVHC~~G~ 183 (242)
.++..+.++++++++.+++.-.. .-+|.||....
T Consensus 153 STGma~~~ei~~av~~~r~~g~~-~i~LLhC~s~Y 186 (347)
T COG2089 153 STGMATIEEIEEAVAILRENGNP-DIALLHCTSAY 186 (347)
T ss_pred EcccccHHHHHHHHHHHHhcCCC-CeEEEEecCCC
Confidence 35556778899988877654222 34999998765
No 157
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=20.47 E-value=2e+02 Score=24.94 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhCCCcEEEEcCCCCChHHHHHHHHHHH-----cCCCCCHHHHHHHHHh
Q 026154 157 EIESAVKWGSRKRAQNRPVFVHCAYGHGRSVAVACALLVA-----LSIVEDWREAEKLIKK 212 (242)
Q Consensus 157 ~l~~av~~i~~~~~~~~~VlVHC~~G~~RS~~vv~ayLm~-----~~~~~~~~eA~~~vr~ 212 (242)
|.+-+.++++-+.+.+.||.|||........-++-.+-.. ..-.-+.++|-+.++.
T Consensus 112 Q~~vf~~ql~lA~~~~~Pv~iH~r~a~~~~~~il~~~~~~~~~i~H~fsG~~~~a~~~l~~ 172 (258)
T PRK11449 112 QQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLPRTGVVHGFSGSLQQAERFVQL 172 (258)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecCccHHHHHHHHhcCCCCCeEEEcCCCCHHHHHHHHHC
Confidence 4444444555555668999999987555444444332100 0001367888887774
No 158
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=20.45 E-value=1.3e+02 Score=21.77 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=18.0
Q ss_pred CCCChhHHHHHHHHHHHHhhCCCcEEEE
Q 026154 151 RSPQPGEIESAVKWGSRKRAQNRPVFVH 178 (242)
Q Consensus 151 ~~p~~~~l~~av~~i~~~~~~~~~VlVH 178 (242)
..|+.+++++++.--....++ ||.+|
T Consensus 60 ~~Pt~EevDdfL~~y~~l~~q--Pvv~H 85 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDALMQQ--PVVLH 85 (85)
T ss_pred cCCCHHHHHHHHHHHHHHHhC--CeecC
Confidence 457777777776666666554 88887
No 159
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=20.26 E-value=1.2e+02 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=16.0
Q ss_pred CCChhHHHHHHHHHHHHhhCC-CcEEEEcCCC
Q 026154 152 SPQPGEIESAVKWGSRKRAQN-RPVFVHCAYG 182 (242)
Q Consensus 152 ~p~~~~l~~av~~i~~~~~~~-~~VlVHC~~G 182 (242)
..+.++++.+++++.+.-..+ .-++.||..+
T Consensus 142 matl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 142 MATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 345566666666665321110 2456677654
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=20.22 E-value=49 Score=23.99 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=14.4
Q ss_pred CCceecCCeEEcCCcCc
Q 026154 97 PYSEVCEGLYVGGWPNS 113 (242)
Q Consensus 97 ~~~~I~~~L~lG~~p~~ 113 (242)
|+.||.+|+|+|+....
T Consensus 20 wl~Ei~~GVyVg~~s~r 36 (86)
T PF09707_consen 20 WLLEIRPGVYVGNVSAR 36 (86)
T ss_pred eeEecCCCcEEcCCCHH
Confidence 78899999999976654
No 161
>PRK15358 pathogenicity island 2 effector protein SseF; Provisional
Probab=20.08 E-value=31 Score=28.87 Aligned_cols=30 Identities=13% Similarity=-0.078 Sum_probs=24.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 026154 23 LRSLGFTLLSLPFLYASLVSLLIALASHPS 52 (242)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~~~~v~~ay~~~ 52 (242)
-+|.|.+++.+.-+-+.++..=++.|||.|
T Consensus 64 SGGAg~PLlilAGv~l~LAVaD~aCAYhNW 93 (239)
T PRK15358 64 SGGAGLPIAILAGAALVIAIGDACCAYHNY 93 (239)
T ss_pred cCCccchHHHHhhhHHHHHHHHHHHHhhhh
Confidence 468888888877777888888889999966
Done!