BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026155
         (242 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
          Length = 425

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 173 IQILFPLGRISVMIYGGLASIIFCGYIIYDTDNLIKRYSYDEYIWAAVALYL-DIINLFL 231
           + +L P GRI  M+ GG AS+++   I  D   + +  +Y EY  A       D     L
Sbjct: 266 LTLLNPKGRIWTMVAGGGASVVYSDTIC-DLGGVNELANYGEYSGAPSEQQTYDYAKTIL 324

Query: 232 SLLTIFRAADN 242
           SL+T  +  D 
Sbjct: 325 SLMTREKHPDG 335


>pdb|3CNF|T Chain T, 3.88 Angstrom Structure Of Cytoplasmic Polyhedrosis Virus
           By Cryo-Electron Microscopy
          Length = 1057

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 141 LYTFWAARRGHDFNFLGPFLF 161
           LYTF + RR H    LGPF +
Sbjct: 39  LYTFNSQRRSHTLRLLGPFQY 59


>pdb|3J17|A Chain A, Structure Of A Transcribing Cypovirus By Cryo-Electron
           Microscopy
          Length = 1058

 Score = 28.5 bits (62), Expect = 3.1,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 141 LYTFWAARRGHDFNFLGPFLF 161
           LYTF + RR H    LGPF +
Sbjct: 39  LYTFNSQRRSHTLRLLGPFQY 59


>pdb|3IZ3|A Chain A, Cryoem Structure Of Cytoplasmic Polyhedrosis Virus
 pdb|3IZX|A Chain A, 3.1 Angstrom Cryoem Structure Of Cytoplasmic Polyhedrosis
           Virus
          Length = 1058

 Score = 28.5 bits (62), Expect = 3.2,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 141 LYTFWAARRGHDFNFLGPFLF 161
           LYTF + RR H    LGPF +
Sbjct: 39  LYTFNSQRRSHTLRLLGPFQY 59


>pdb|1JJU|B Chain B, Structure Of A Quinohemoprotein Amine Dehydrogenase With
          A Unique Redox Cofactor And Highly Unusual Crosslinking
 pdb|1PBY|B Chain B, Structure Of The Phenylhydrazine Adduct Of The
          Quinohemoprotein Amine Dehydrogenase From Paracoccus
          Denitrificans At 1.7 A Resolution
          Length = 337

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 11 VEAGATPLYPMMSESPQLRWAFIRKIYSIIAIQLL 45
           +AG TP+ PM++   ++ +A + K  S++ I L+
Sbjct: 30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64


>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
           Bound
          Length = 829

 Score = 26.9 bits (58), Expect = 9.6,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 173 IQILFPLGRISVMIYGGLASIIFCGYIIYDTDNLIKRYSYDEYIWA-AVALYLDIINLFL 231
           + +L P GRI  M+ GG AS+++   I  D   + +  +Y EY  A +     D     L
Sbjct: 266 LTLLNPKGRIWTMVAGGGASVVYSDTIC-DLGGVNELANYGEYSGAPSEQQTYDYAKTIL 324

Query: 232 SLLT 235
           SL+T
Sbjct: 325 SLMT 328


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.333    0.146    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,406,672
Number of Sequences: 62578
Number of extensions: 228735
Number of successful extensions: 360
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 8
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 50 (23.9 bits)