Query 026155
Match_columns 242
No_of_seqs 125 out of 1178
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 06:51:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026155.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026155hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k8v_A Neuropeptide F; moniezi 25.4 49 0.0017 19.7 2.3 29 10-39 2-30 (40)
2 1pfi_A Major coat protein of P 23.3 71 0.0024 19.1 2.7 26 148-173 14-39 (46)
3 1q90_R Cytochrome B6-F complex 10.2 3.3E+02 0.011 16.6 4.0 11 28-38 10-20 (49)
4 2q79_A Regulatory protein E2; 9.9 1.2E+02 0.004 21.4 1.5 14 23-36 53-66 (93)
5 1f9f_A Regulatory protein E2; 9.6 1.2E+02 0.0041 20.9 1.4 14 23-36 55-68 (83)
6 1a7g_E E2 DBD, regulatory prot 9.1 1.4E+02 0.0047 20.5 1.5 14 23-36 54-67 (82)
7 1r8h_A Regulatory protein E2; 8.6 1.4E+02 0.0047 20.7 1.4 14 23-36 56-69 (87)
8 2bop_A Protein (E2); protein-D 7.7 1.5E+02 0.0052 20.4 1.3 14 23-36 55-68 (85)
9 2a7o_A Huntingtin interacting 7.6 3.9E+02 0.013 19.4 3.5 26 4-36 35-60 (112)
10 1p22_C Beta-catenin, Pro2286; 7.3 1.4E+02 0.0047 16.0 0.7 16 1-16 6-22 (26)
No 1
>1k8v_A Neuropeptide F; moniezia expansa, NPF, unknown function; NMR {Synthetic} SCOP: j.6.1.1
Probab=25.42 E-value=49 Score=19.68 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=19.0
Q ss_pred cccCCCCCCCCcccCCHHHHHHHHHHHHHH
Q 026155 10 DVEAGATPLYPMMSESPQLRWAFIRKIYSI 39 (242)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~r~~fl~kvy~~ 39 (242)
|-..+.+|. ++.|++++.-+++++++=-.
T Consensus 2 ~~~~~~pp~-p~~F~s~~~l~~YL~~LneY 30 (40)
T 1k8v_A 2 DKDFIVNPS-DLVLDNKAALRDYLRQINEY 30 (40)
T ss_dssp CCSCSSCST-TCSCSSCSHHHHHHHHHHHH
T ss_pred ccccCCCCC-hhhcCCHHHHHHHHHHHHHH
Confidence 344555555 77888776666899886433
No 2
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=23.30 E-value=71 Score=19.13 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=21.5
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHHH
Q 026155 148 RRGHDFNFLGPFLFGAVMVLLVFAFI 173 (242)
Q Consensus 148 ~tk~d~~~~~~~l~~~l~~liv~~l~ 173 (242)
..|.|.+..++.+..++..+.++|++
T Consensus 14 ~G~~Dm~si~~~IVGaLvil~VAGLi 39 (46)
T 1pfi_A 14 DGQGDMKAIGGYIVGALVILAVAGLI 39 (46)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999998888888888875
No 3
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=10.17 E-value=3.3e+02 Score=16.64 Aligned_cols=11 Identities=9% Similarity=0.142 Sum_probs=7.3
Q ss_pred HHHHHHHHHHH
Q 026155 28 LRWAFIRKIYS 38 (242)
Q Consensus 28 ~r~~fl~kvy~ 38 (242)
.|++|+.++-.
T Consensus 10 ~RRqfln~l~~ 20 (49)
T 1q90_R 10 NKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 47688886543
No 4
>2q79_A Regulatory protein E2; beta barrel, DNA binding protein; 1.80A {Human papillomavirus type 16} SCOP: d.58.8.1 PDB: 1by9_A 1r8p_A 1zzf_A 3mi7_X
Probab=9.88 E-value=1.2e+02 Score=21.42 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 53 F~s~~QR~~FL~tV 66 (93)
T 2q79_A 53 YDSEWQRDQFLSQV 66 (93)
T ss_dssp CSSHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999875
No 5
>1f9f_A Regulatory protein E2; dimeric beta barrel, activator, DNA-binding, trans-acting factor, transcription; 1.90A {Human papillomavirus type 18} SCOP: d.58.8.1 PDB: 1jj4_A
Probab=9.65 E-value=1.2e+02 Score=20.86 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.5
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 55 F~s~~QR~~FL~~V 68 (83)
T 1f9f_A 55 YHSETQRTKFLNTV 68 (83)
T ss_dssp CSSHHHHHHHHHHC
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999865
No 6
>1a7g_E E2 DBD, regulatory protein E2; transcription regulation, cervical cance; 2.40A {Human papillomavirus type 31} SCOP: d.58.8.1 PDB: 1dhm_A
Probab=9.11 E-value=1.4e+02 Score=20.51 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 54 F~s~~QR~~FL~~V 67 (82)
T 1a7g_E 54 YISTSQRDDFLNTV 67 (82)
T ss_dssp CSCHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999865
No 7
>1r8h_A Regulatory protein E2; anti-parallel beta-barrel, DNA-binding domain, transcription, replication; 1.90A {Human papillomavirus type 6A} SCOP: d.58.8.1 PDB: 2ayb_A 2aye_A 2ayg_A
Probab=8.60 E-value=1.4e+02 Score=20.73 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 56 F~s~~QR~~FL~~V 69 (87)
T 1r8h_A 56 YHSEEQRQQFLNVV 69 (87)
T ss_dssp CSSHHHHHHHHHHC
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999865
No 8
>2bop_A Protein (E2); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.70A {Bovine papillomavirus type 1} SCOP: d.58.8.1 PDB: 1jjh_A
Probab=7.72 E-value=1.5e+02 Score=20.40 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 55 F~s~~QR~~FL~tV 68 (85)
T 2bop_A 55 FGSPSQRQDFLKHV 68 (85)
T ss_dssp ESSHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
No 9
>2a7o_A Huntingtin interacting protein B; SRI domain, SRI, HSRI, SET2, HSET2, phosphoctd associating protein, SET2 RPB1-interacting domain, PCID, PCAP; NMR {Homo sapiens}
Probab=7.62 E-value=3.9e+02 Score=19.41 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCCCCCCcccCCHHHHHHHHHHH
Q 026155 4 QPYRKSDVEAGATPLYPMMSESPQLRWAFIRKI 36 (242)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~fl~kv 36 (242)
+|||+.|+..| -+.+.+.=....||.
T Consensus 35 ~pYRk~~Ck~G-------RITs~EDFK~LaRKL 60 (112)
T 2a7o_A 35 NPYRKPDCKVG-------RITTTEDFKHLARKL 60 (112)
T ss_dssp TTTSSTTCSSS-------BCCCHHHHHHHHHHH
T ss_pred cccccCccccC-------ccccHHHHHHHHHHH
No 10
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=7.35 E-value=1.4e+02 Score=15.99 Aligned_cols=16 Identities=38% Similarity=0.634 Sum_probs=0.0
Q ss_pred CCCCCCC-CCcccCCCC
Q 026155 1 MWAQPYR-KSDVEAGAT 16 (242)
Q Consensus 1 ~~~~~~~-~~~~~~~~~ 16 (242)
||||++- -+-+.+|++
T Consensus 6 ~Wqq~~y~DSGI~SGat 22 (26)
T 1p22_C 6 HWQQQSYLDSGIHSGAT 22 (26)
T ss_pred hhhhcCccccccccCcc
Done!