Query 026155
Match_columns 242
No_of_seqs 125 out of 1178
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 06:51:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026155.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026155hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 28.4 22 0.0016 21.4 3.0 28 29-56 1-29 (64)
2 d1f9fa_ d.58.8.1 (A:) Papillom 10.5 50 0.0037 21.1 1.4 14 23-36 53-66 (81)
3 d1a7ge_ d.58.8.1 (E:) Papillom 9.4 61 0.0045 20.7 1.5 14 23-36 54-67 (82)
4 d1ej5a_ a.68.1.1 (A:) Wiscott- 9.4 90 0.0066 20.9 2.5 28 9-37 11-53 (107)
5 d2q79a1 d.58.8.1 (A:284-362) P 9.1 63 0.0046 20.4 1.5 14 23-36 52-65 (79)
6 d1r8ha_ d.58.8.1 (A:) Papillom 8.4 67 0.0049 20.7 1.4 14 23-36 56-69 (87)
7 d2bopa_ d.58.8.1 (A:) Papillom 6.9 82 0.006 20.1 1.3 14 23-36 55-68 (85)
8 d1iwga7 f.35.1.1 (A:7-37,A:331 6.5 4.1E+02 0.03 18.6 10.3 35 185-219 99-135 (199)
9 d1zaka2 g.41.2.1 (A:128-158) M 4.9 73 0.0053 16.5 0.0 15 10-26 5-19 (31)
10 d1mwpa_ d.170.2.1 (A:) N-termi 4.8 1.5E+02 0.011 19.3 1.7 28 10-37 19-50 (96)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=28.35 E-value=22 Score=21.35 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 026155 29 RWAFIRKIYSIIAIQLLA-TIAVASVVVS 56 (242)
Q Consensus 29 r~~fl~kvy~~l~~~ll~-t~~~~~~~~~ 56 (242)
|.+..-|+...++.=++. |.+.+..++.
T Consensus 1 r~N~~mk~lT~it~iflP~t~i~gifGMN 29 (64)
T d2iuba2 1 KTNEVMKVLTIIATIFMPLTFIAGIYGMN 29 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 445566666666665554 3333333443
No 2
>d1f9fa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 18 [TaxId: 333761]}
Probab=10.45 E-value=50 Score=21.06 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|+|++.|..|++.|
T Consensus 53 F~s~~QR~~FL~~V 66 (81)
T d1f9fa_ 53 YHSETQRTKFLNTV 66 (81)
T ss_dssp CSSHHHHHHHHHHC
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999864
No 3
>d1a7ge_ d.58.8.1 (E:) Papillomavirus-1 E2 protein {Human papillomavirus type 31 [TaxId: 10585]}
Probab=9.42 E-value=61 Score=20.66 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|+|++.|..|+..|
T Consensus 54 F~s~~QR~~FL~~V 67 (82)
T d1a7ge_ 54 YISTSQRDDFLNTV 67 (82)
T ss_dssp CSCHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999864
No 4
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.35 E-value=90 Score=20.89 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=15.8
Q ss_pred CcccCCCC-CCCCcc--------------cCCHHHHHHHHHHHH
Q 026155 9 SDVEAGAT-PLYPMM--------------SESPQLRWAFIRKIY 37 (242)
Q Consensus 9 ~~~~~~~~-~~~~~~--------------~~~~~~r~~fl~kvy 37 (242)
|||++|.+ ...|+. ..||+.| .|+.+.|
T Consensus 11 ~D~~tGf~~~glp~eW~~lL~~sGIsk~~lkd~et~-~~I~~Fi 53 (107)
T d1ej5a_ 11 WDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETS-KLIYDFI 53 (107)
T ss_dssp CBTTTBCCTTTCCHHHHHHHHHTTCCHHHHSCHHHH-HHHHHHH
T ss_pred ecCCCCccccCCCHHHHHHHHHcCCCHHHhcCHHHH-HHHHHHH
Confidence 68888843 334433 2466766 4555554
No 5
>d2q79a1 d.58.8.1 (A:284-362) Papillomavirus-1 E2 protein {Human papillomavirus type 16 [TaxId: 333760]}
Probab=9.11 E-value=63 Score=20.44 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 52 F~s~~QR~~FL~~V 65 (79)
T d2q79a1 52 YDSEWQRDQFLSQV 65 (79)
T ss_dssp CSSHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999864
No 6
>d1r8ha_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Human papillomavirus type 6a [TaxId: 37122]}
Probab=8.45 E-value=67 Score=20.72 Aligned_cols=14 Identities=21% Similarity=0.325 Sum_probs=12.4
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|+|++.|..|+..|
T Consensus 56 F~s~~QR~~FL~~V 69 (87)
T d1r8ha_ 56 YHSEEQRQQFLNVV 69 (87)
T ss_dssp CSSHHHHHHHHHHC
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999864
No 7
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine papillomavirus type 1 [TaxId: 10559]}
Probab=6.95 E-value=82 Score=20.14 Aligned_cols=14 Identities=29% Similarity=0.541 Sum_probs=12.3
Q ss_pred cCCHHHHHHHHHHH
Q 026155 23 SESPQLRWAFIRKI 36 (242)
Q Consensus 23 ~~~~~~r~~fl~kv 36 (242)
|.|++.|..|+..|
T Consensus 55 F~s~~QR~~FL~~V 68 (85)
T d2bopa_ 55 FGSPSQRQDFLKHV 68 (85)
T ss_dssp ESSHHHHHHHHHHS
T ss_pred ECCHHHHHHHHhcC
Confidence 89999999999864
No 8
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.54 E-value=4.1e+02 Score=18.60 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-c-CCccHHHHHH
Q 026155 185 MIYGGLASIIFCGYIIYDTDNLIK-R-YSYDEYIWAA 219 (242)
Q Consensus 185 ~i~~~~g~~lf~~~l~~Dtq~i~~-~-~~~~dyi~~A 219 (242)
........+-++..+....++-.+ + .+++|.+..|
T Consensus 99 ~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a 135 (199)
T d1iwga7 99 MVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKS 135 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHG
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 444444555577777766655433 2 2456654433
No 9
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=4.92 E-value=73 Score=16.46 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=0.0
Q ss_pred cccCCCCCCCCcccCCH
Q 026155 10 DVEAGATPLYPMMSESP 26 (242)
Q Consensus 10 ~~~~~~~~~~~~~~~~~ 26 (242)
|||+| +.|-..|..|
T Consensus 5 DP~TG--~iYH~~f~pp 19 (31)
T d1zaka2 5 DPVTG--KIYHLKYSPP 19 (31)
T ss_dssp CTTTC--CEEESSSSCC
T ss_pred CCCCC--cEeEEecCCC
No 10
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=1.5e+02 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred cccCCCCCCCCcc----cCCHHHHHHHHHHHH
Q 026155 10 DVEAGATPLYPMM----SESPQLRWAFIRKIY 37 (242)
Q Consensus 10 ~~~~~~~~~~~~~----~~~~~~r~~fl~kvy 37 (242)
|.|+|.|...+.- +.|++.-.++=||+|
T Consensus 19 ~~~~G~W~~D~s~~~~C~~~k~~IL~YCqk~Y 50 (96)
T d1mwpa_ 19 NVQNGKWDSDPSGTKTCIDTKEGILQYCQEVY 50 (96)
T ss_dssp CTTTCCEEECTTSCCBCCCSHHHHHHHHHHHS
T ss_pred cccCCceeeCCCCCccccCChHHHHHHHHHHC
Done!