BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026156
(242 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P87216|VIPI_SCHPO Protein vip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vip1 PE=1 SV=1
Length = 257
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 87/185 (47%), Gaps = 39/185 (21%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
V +SP TEK I +FFS CG ++ +SGE TA + F A +TA+LL A +
Sbjct: 7 VTNISPEVTEKQISDFFSFCGKVSNISTEKSGET-QTAKIQFERPSATKTALLLQDALLG 65
Query: 70 DQPVCIIRWGEYTDEPNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKT---- 125
+ I T E D + STT G G+ +D ++
Sbjct: 66 QNKIQI------TSE----------DGGAASTTDQGG----AGGDQAARQEDKPRSAIIS 105
Query: 126 -MIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEK 184
++++GY LS L K+ LD+SYG+S S G+ + +++ ++SV+E+
Sbjct: 106 ELLSRGYHLSDVTLEKSIQLDQSYGVS----------SKFKGI---LESALSGVRSVNER 152
Query: 185 YHVSD 189
YHV++
Sbjct: 153 YHVTE 157
>sp|Q6C2Q7|NOP12_YARLI Nucleolar protein 12 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=NOP12 PE=3 SV=1
Length = 509
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 19 EKDIHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATI 68
E+ + E FS CGD +V I+R + G AYV F + ++E A+LL+G I
Sbjct: 287 EESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALLLNGKGI 339
>sp|O13845|RSD1_SCHPO RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rsd1 PE=1 SV=2
Length = 603
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
V L+ T +++++FF G +I+R SG G AYV F + +++ A+ LSG
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALSGK 303
Query: 67 TIVDQPVCI 75
++ PV +
Sbjct: 304 RLLGLPVIV 312
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 38.5 bits (88), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEI---IRSGECGGTAYVTFSNAYALETAVLLSGA 66
V LS NATE D+ F CGD + + +SG G YVTFS+ + + V ++G
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGH 429
Query: 67 TIVDQP 72
I +P
Sbjct: 430 FIAGRP 435
>sp|Q54WM4|EIF3G_DICDI Eukaryotic translation initiation factor 3 subunit G
OS=Dictyostelium discoideum GN=eif3G PE=3 SV=1
Length = 233
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETAV 61
V LS NATEKD++E F G V I +S G G AYVT+++ + E A+
Sbjct: 156 VSNLSQNATEKDLYELFGQFGPVSRVSIPKSMEGSSKGFAYVTYNHLDSAEKAL 209
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 38.1 bits (87), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
V GL + TE+D+ + FS G+ V V+I CG +V F+N + E A+ T++
Sbjct: 331 VGGLDADVTEEDLMQPFSDFGEVVSVKIPVGKGCG---FVQFANRQSAEEAIGNLNGTVI 387
Query: 70 DQPVCIIRWGEYTDEPN-PWISSWGFDENSG 99
+ + WG PN W S G N G
Sbjct: 388 GKNTVRLSWGR---SPNKQWRSDSGNQWNGG 415
>sp|Q8TC92|ENOX1_HUMAN Ecto-NOX disulfide-thiol exchanger 1 OS=Homo sapiens GN=ENOX1 PE=1
SV=1
Length = 643
Score = 37.7 bits (86), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSG 65
GL NATE+ I E F CGD + + C ++ F+ + ++ A+ LSG
Sbjct: 148 GLPENATEEIIQEVFEQCGDITAIRKSKKNFC----HIRFAEEFMVDKAIYLSG 197
>sp|Q8BHR2|ENOX1_MOUSE Ecto-NOX disulfide-thiol exchanger 1 OS=Mus musculus GN=Enox1 PE=1
SV=1
Length = 643
Score = 37.7 bits (86), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 12 GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSG 65
GL NATE+ I E F CGD + + C ++ F+ + ++ A+ LSG
Sbjct: 148 GLPENATEEIIQEVFEQCGDITAIRKSKKNFC----HIRFAEEFMVDKAIYLSG 197
>sp|A5F9R5|SYH_FLAJ1 Histidine--tRNA ligase OS=Flavobacterium johnsoniae (strain ATCC
17061 / DSM 2064 / UW101) GN=hisS PE=3 SV=1
Length = 475
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 12/73 (16%)
Query: 118 VAQDAVKT-MIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNRIGLTDKINASME 176
+ +D VK MI KG +S+DALVK + L + S + A K+A+LS D +++S E
Sbjct: 233 IGEDGVKKEMIEKG--ISEDALVKVQPL---FNFSGTFADKIAQLS------DLLSSSEE 281
Query: 177 AIKSVDEKYHVSD 189
+K V+E + D
Sbjct: 282 GMKGVEELKFICD 294
>sp|B5DGI7|RBM8A_SALSA RNA-binding protein 8A OS=Salmo salar GN=rbm8a PE=2 SV=1
Length = 175
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+DIH+ F+ G+ +H+ + R+G G A V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPVCIIRWG 79
L+G ++ QP+ + WG
Sbjct: 132 EGLNGQDMMGQPIS-VDWG 149
>sp|Q05AT9|U1SBP_XENLA U11/U12 small nuclear ribonucleoprotein 35 kDa protein OS=Xenopus
laevis GN=snrnp35 PE=2 SV=1
Length = 272
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGA 66
V LSP TE+ + E FS GD + ++R +G G A++ + A+ A +
Sbjct: 55 VSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKAHRDANK 114
Query: 67 TIVDQPVCII 76
++DQ +
Sbjct: 115 LVIDQREVFV 124
>sp|Q9DF42|RB8AA_XENLA RNA-binding protein 8A-A OS=Xenopus laevis GN=rbm8a-a PE=2 SV=1
Length = 174
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSN-AYALETA 60
G++ V G+ ATE+DIH+ F G+ +H+ + R+G G A V + AL
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 61 VLLSGATIVDQPVCIIRWG 79
L+G ++ QPV + WG
Sbjct: 132 EGLNGQDLMGQPVS-VDWG 149
>sp|Q6PH90|RB8AB_XENLA RNA-binding protein 8A-B OS=Xenopus laevis GN=rbm8a-b PE=2 SV=1
Length = 174
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSN-AYALETA 60
G++ V G+ ATE+DIH+ F G+ +H+ + R+G G A V + AL
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 61 VLLSGATIVDQPVCIIRWG 79
L+G ++ QPV + WG
Sbjct: 132 EGLNGQDLMGQPVS-VDWG 149
>sp|P53883|NOP13_YEAST Nucleolar protein 13 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP13 PE=1 SV=2
Length = 403
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSN 53
V LS + T+ + + F HCGD V + + SG+C G A++ F N
Sbjct: 243 VGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKN 289
>sp|Q28BZ1|RBM8A_XENTR RNA-binding protein 8A OS=Xenopus tropicalis GN=rbm8a PE=2 SV=1
Length = 174
Score = 35.8 bits (81), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSN-AYALETA 60
G++ V G+ ATE+DIH+ F G+ +H+ + R+G G A V + AL
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAM 131
Query: 61 VLLSGATIVDQPVCIIRWG 79
L+G ++ QP+ + WG
Sbjct: 132 EGLNGQDLMGQPIS-VDWG 149
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIV 69
V G+ P+ ++D+ + FS G+ V V+I CG +V F++ + E A+ T++
Sbjct: 325 VGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGKGCG---FVQFADRKSAEDAIESLNGTVI 381
Query: 70 DQPVCIIRWGE 80
+ + WG
Sbjct: 382 GKNTVRLSWGR 392
>sp|Q9YGW7|DAZL_DANRE Deleted in azoospermia-like OS=Danio rerio GN=dazl PE=1 SV=1
Length = 229
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 20/83 (24%)
Query: 3 AGGYVAEVVGLSPNAT----------EKDIHEFFSHCGDPVHVEII--RSGECGGTAYVT 50
+ GY+ ++PN E +I EFF+ G V+II R G C G +V
Sbjct: 34 SNGYILPEGKMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVY 93
Query: 51 FSNAYALETAVLLSGATIVDQPV 73
FS ++ TIVDQP+
Sbjct: 94 FSEDVDIQ--------TIVDQPI 108
>sp|Q5AJS6|MRD1_CANAL Multiple RNA-binding domain-containing protein 1 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=MRD1 PE=3
SV=1
Length = 841
Score = 35.4 bits (80), Expect = 0.33, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEII--RSGECGGTAYVTFSNAYALETAVLLSGAT 67
V GL TE+ + EFFS GD V+++ R+GE A++ + +A A E AV +
Sbjct: 6 VKGLPKYYTEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKS 65
Query: 68 IVDQPVCIIRWGEYTDEP 85
+D + + + +P
Sbjct: 66 FIDTARIEVEFAKTFSDP 83
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
V GL P E+ + + FS G+ VHV+I+ CG +V F + E A+ L+G +
Sbjct: 286 VGGLDPTVAEEHLRQVFSPYGELVHVKIVAGKRCG---FVQFGTRASAEQALSSLNGTQL 342
Query: 69 VDQPVCIIRWGE 80
Q + + WG
Sbjct: 343 GGQSI-RLSWGR 353
>sp|Q16206|ENOX2_HUMAN Ecto-NOX disulfide-thiol exchanger 2 OS=Homo sapiens GN=ENOX2 PE=1
SV=2
Length = 610
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
V GL N TE+ I E F CG+ + + + C ++ F+ Y ++ A+ LSG I
Sbjct: 132 VGGLPENGTEQIIVEVFEQCGEIIAIRKSKKNFC----HIRFAEEYMVDKALYLSGYRI 186
>sp|Q8R0Z2|ENOX2_MOUSE Ecto-NOX disulfide-thiol exchanger 2 OS=Mus musculus GN=Enox2 PE=2
SV=1
Length = 598
Score = 35.0 bits (79), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
V GL N TE+ I E F CG+ + + + C ++ F+ Y ++ A+ LSG I
Sbjct: 103 VGGLPENGTEQIIVEVFEQCGEIIAIRKSKKNFC----HIRFAEEYMVDKALYLSGYRI 157
>sp|Q5D018|RBM8A_DANRE RNA-binding protein 8A OS=Danio rerio GN=rbm8a PE=2 SV=1
Length = 174
Score = 34.7 bits (78), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+D+H+ F+ G+ +H+ + R+G G A V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDVHDKFAEFGEIKNLHLNLDRRTGYLKGYALVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPV----CIIR 77
L+G ++ QP+ C +R
Sbjct: 132 EGLNGQELMGQPISVDWCFVR 152
>sp|Q5M9F1|RBM34_RAT RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1
Length = 428
Score = 34.7 bits (78), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 22 IHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77
+ E F CG V V I+R+ G G YV F N A+ A+ L+ + ++ + + ++R
Sbjct: 301 LEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMR 359
>sp|Q2U256|PPIL4_ASPOR Peptidyl-prolyl cis-trans isomerase-like 4 OS=Aspergillus oryzae
(strain ATCC 42149 / RIB 40) GN=cyp6 PE=3 SV=1
Length = 461
Score = 34.7 bits (78), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGT---AYVTFSNAYALETAVLLSGA 66
V L+P ++D+H FS G + E+IR G + A++ F N E A
Sbjct: 252 VCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQG 311
Query: 67 TIVD 70
++D
Sbjct: 312 VLID 315
>sp|Q5ZLN5|TADBP_CHICK TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1
Length = 414
Score = 34.7 bits (78), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEI---IRSGECGGTAYVTFSNAYALETAV-LLSG 65
V+GL TE+D+ E+FS G+ + V++ I++G G +V F++ ET V ++S
Sbjct: 108 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTD---YETQVKVMSQ 164
Query: 66 ATIVDQPVC 74
++D C
Sbjct: 165 RHMIDGRWC 173
>sp|Q7QCB6|NCBP2_ANOGA Nuclear cap-binding protein subunit 2 OS=Anopheles gambiae GN=Cbp20
PE=3 SV=3
Length = 163
Score = 34.7 bits (78), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 13 LSPNATEKDIHEFFSHCGDPVHV----EIIRSGECGGTAYVTFSNAYALETAVLLSGATI 68
LS TE+ IHE FS CGD + + + C G +V + + E+A+ T
Sbjct: 45 LSFYTTEEQIHELFSRCGDVRRIIMGLDKFKKTPC-GFCFVEYYSRLDAESAMRYINGTR 103
Query: 69 VDQPVCIIRW 78
+D + + W
Sbjct: 104 LDDRIVRVDW 113
>sp|Q8C5L7|RBM34_MOUSE RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1
Length = 375
Score = 34.3 bits (77), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 22 IHEFFSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATIVDQPVCIIR 77
+ E F CG V V I+R+ G G YV F N A+ A+ L+ + ++ + + ++R
Sbjct: 307 LEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVMR 365
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 34.3 bits (77), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATI 68
V GL N T+ ++ F G+ +HV+I CG +V ++N + E A+ +L+G +
Sbjct: 264 VGGLDANVTDDELKSIFGQFGELLHVKIPPGKRCG---FVQYANKASAEHALSVLNGTQL 320
Query: 69 VDQPVCIIRWGE 80
Q + + WG
Sbjct: 321 GGQSIR-LSWGR 331
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 34.3 bits (77), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 16 NATEKDIHEFFSHCGDPVHVEIIR---SGECGGTAYVTFSNAYALETAVLLSGATIVDQP 72
N+T ++I E F CG V I + + + AY+ F ++ ++E A++++G+ +P
Sbjct: 65 NSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRP 124
Query: 73 VCI 75
+ +
Sbjct: 125 IVV 127
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR--SGECGGTAYVTFSNAY-AL 57
+YAG L P TE + + F H + V V + R + G AY+ FSN A
Sbjct: 51 LYAGD-------LDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAY 103
Query: 58 ETAVLLSGATIVDQPVCII 76
L+ + D+P+ I+
Sbjct: 104 RAMEALNYTPLFDRPIRIM 122
>sp|Q9CWZ3|RBM8A_MOUSE RNA-binding protein 8A OS=Mus musculus GN=Rbm8a PE=1 SV=3
Length = 174
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+DIH+ F+ G+ +H+ + R+G G V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPVCI 75
L+G ++ QP+ +
Sbjct: 132 EGLNGQDLMGQPISV 146
>sp|O14369|SCE3_SCHPO Probable RNA-binding protein sce3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sce3 PE=1 SV=1
Length = 388
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETAVLLS 64
+ A V LS + TE D+ +FF + + I E G YV F A L A+ LS
Sbjct: 94 FTAHVGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALS 153
Query: 65 GATIVDQPVCI 75
G ++ +PV I
Sbjct: 154 GEDLMGRPVRI 164
>sp|Q27W01|RBM8A_RAT RNA-binding protein 8A OS=Rattus norvegicus GN=Rbm8a PE=2 SV=1
Length = 174
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+DIH+ F+ G+ +H+ + R+G G V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPVCI 75
L+G ++ QP+ +
Sbjct: 132 EGLNGQDLMGQPISV 146
>sp|Q9Y5S9|RBM8A_HUMAN RNA-binding protein 8A OS=Homo sapiens GN=RBM8A PE=1 SV=1
Length = 174
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+DIH+ F+ G+ +H+ + R+G G V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPVCI 75
L+G ++ QP+ +
Sbjct: 132 EGLNGQDLMGQPISV 146
>sp|Q3ZCE8|RBM8A_BOVIN RNA-binding protein 8A OS=Bos taurus GN=RBM8A PE=2 SV=2
Length = 174
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGD--PVHVEI-IRSGECGGTAYVTFSNAYALETAV 61
G++ V G+ ATE+DIH+ F+ G+ +H+ + R+G G V + + A+
Sbjct: 72 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAM 131
Query: 62 L-LSGATIVDQPVCI 75
L+G ++ QP+ +
Sbjct: 132 EGLNGQDLMGQPISV 146
>sp|Q08208|NOP12_YEAST Nucleolar protein 12 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NOP12 PE=1 SV=1
Length = 459
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 26 FSHCGDPVHVEIIRSGECG---GTAYVTFSNAYALETAVLLSGATIVDQ 71
F CGD +V IIR + G AYV F + ++ A+LL+ + Q
Sbjct: 299 FEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALLLNEKPMKSQ 347
>sp|B4NB54|NCBP2_DROWI Nuclear cap-binding protein subunit 2 OS=Drosophila willistoni
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 10 VVGLSPNATEKDIHEFFSHCGD----PVHVEIIRSGECGGTAYVTFSNAYALETAVLLSG 65
V LS TE+ IHE FS CGD + ++ + C G +V + E+A+
Sbjct: 34 VGNLSFYTTEEQIHELFSRCGDVRLIVMGLDKYKKTPC-GFCFVEYYTRSEAESAMRFVN 92
Query: 66 ATIVDQPVCIIRW 78
T +D + + W
Sbjct: 93 GTRLDDRLIRVDW 105
>sp|B4KCD5|NCBP2_DROMO Nuclear cap-binding protein subunit 2 OS=Drosophila mojavensis
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG-------ECGGTAYVTFSNAYALETAVL 62
V LS TE+ IHE FS CGD V II G C G +V + E A+
Sbjct: 34 VGNLSFYTTEEQIHELFSRCGD---VRIIVMGLDKYKKTPC-GFCFVEYYTRAEAEAAMR 89
Query: 63 LSGATIVDQPVCIIRW 78
T +D + + W
Sbjct: 90 FVNGTRLDDRLIRVDW 105
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 20 KDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCI 75
+D+ EFFS G V +I S G AYV F + ++ A+ L+G ++ P+ +
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 20 KDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCI 75
+D+ EFFS G V +I S G AYV F + ++ A+ L+G ++ P+ +
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 20 KDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCI 75
+D+ EFFS G V +I S G AYV F + ++ A+ L+G ++ P+ +
Sbjct: 167 RDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIV 225
>sp|B4JUT1|NCBP2_DROGR Nuclear cap-binding protein subunit 2 OS=Drosophila grimshawi
GN=Cbp20 PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG-------ECGGTAYVTFSNAYALETAVL 62
V LS TE+ IHE FS CGD V II G C G +V + E A+
Sbjct: 34 VGNLSFYTTEEQIHELFSRCGD---VRIIVMGLDKYKKTPC-GFCFVEYYTRAEAEAAMR 89
Query: 63 LSGATIVDQPVCIIRW 78
T +D + + W
Sbjct: 90 FVNGTRLDDRLIRVDW 105
>sp|B4LZ88|NCB2B_DROVI Nuclear cap-binding protein subunit 2B OS=Drosophila virilis
GN=Cbp20-B PE=3 SV=1
Length = 154
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG-------ECGGTAYVTFSNAYALETAVL 62
V LS TE+ IHE FS CGD V II G C G +V + E A+
Sbjct: 34 VGNLSFYTTEEQIHELFSRCGD---VRIIVMGLDKYKKTPC-GFCFVEYYTRAEAEAAMR 89
Query: 63 LSGATIVDQPVCIIRW 78
T +D + + W
Sbjct: 90 FVNGTRLDDRLIRVDW 105
>sp|Q6AY09|HNRH2_RAT Heterogeneous nuclear ribonucleoprotein H2 OS=Rattus norvegicus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFA 336
>sp|P70333|HNRH2_MOUSE Heterogeneous nuclear ribonucleoprotein H2 OS=Mus musculus
GN=Hnrnph2 PE=1 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFA 336
>sp|Q5RD26|HNRH2_PONAB Heterogeneous nuclear ribonucleoprotein H2 OS=Pongo abelii
GN=HNRNPH2 PE=2 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFA 336
>sp|P55795|HNRH2_HUMAN Heterogeneous nuclear ribonucleoprotein H2 OS=Homo sapiens
GN=HNRNPH2 PE=1 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFA 336
>sp|Q3SZF3|HNRH2_BOVIN Heterogeneous nuclear ribonucleoprotein H2 OS=Bos taurus GN=HNRNPH2
PE=2 SV=1
Length = 449
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPMRVHIEIGPDGRVTGEADVEFA 336
>sp|P31943|HNRH1_HUMAN Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens
GN=HNRNPH1 PE=1 SV=4
Length = 449
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPVRVHIEIGPDGRVTGEADVEFA 336
>sp|O35737|HNRH1_MOUSE Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus
GN=Hnrnph1 PE=1 SV=3
Length = 449
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 5 GYVAEVVGLSPNATEKDIHEFFSHCGDP--VHVEIIRSGECGGTAYVTFS 52
G+ + GL ATE DI+ FFS +P VH+EI G G A V F+
Sbjct: 288 GHCVHMRGLPYRATENDIYNFFSPL-NPVRVHIEIGPDGRVTGEADVEFA 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,224,210
Number of Sequences: 539616
Number of extensions: 3406409
Number of successful extensions: 7633
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 7550
Number of HSP's gapped (non-prelim): 178
length of query: 242
length of database: 191,569,459
effective HSP length: 114
effective length of query: 128
effective length of database: 130,053,235
effective search space: 16646814080
effective search space used: 16646814080
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)