Query 026156
Match_columns 242
No_of_seqs 260 out of 1227
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 04:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03121 nucleic acid binding 100.0 1.1E-82 2.4E-87 559.8 23.3 241 1-242 1-242 (243)
2 PLN03120 nucleic acid binding 100.0 5.5E-75 1.2E-79 517.1 21.0 225 5-241 4-232 (260)
3 PLN03134 glycine-rich RNA-bind 99.6 4.7E-14 1E-18 116.4 11.9 80 5-84 34-117 (144)
4 PF00076 RRM_1: RNA recognitio 99.6 1.9E-14 4.2E-19 101.3 8.1 67 8-74 1-70 (70)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 6.7E-13 1.4E-17 121.5 11.5 76 5-80 269-348 (352)
6 KOG0125 Ataxin 2-binding prote 99.4 4.6E-13 1E-17 122.6 7.8 78 4-81 95-174 (376)
7 PF14259 RRM_6: RNA recognitio 99.4 1.3E-12 2.9E-17 93.1 8.4 67 8-74 1-70 (70)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.5E-12 3.3E-17 119.1 10.8 76 5-80 3-82 (352)
9 smart00362 RRM_2 RNA recogniti 99.3 7E-12 1.5E-16 86.5 8.9 70 7-76 1-72 (72)
10 TIGR01659 sex-lethal sex-letha 99.3 4.5E-12 9.8E-17 118.4 9.8 76 4-79 106-185 (346)
11 KOG0121 Nuclear cap-binding pr 99.3 3.6E-12 7.8E-17 103.5 6.8 78 5-82 36-117 (153)
12 KOG0107 Alternative splicing f 99.3 6E-12 1.3E-16 106.8 8.3 77 4-82 9-86 (195)
13 KOG0105 Alternative splicing f 99.3 7.4E-12 1.6E-16 107.4 6.9 76 5-80 6-82 (241)
14 TIGR01622 SF-CC1 splicing fact 99.3 2E-11 4.4E-16 115.8 10.2 74 5-78 89-165 (457)
15 PLN03213 repressor of silencin 99.2 2.3E-11 4.9E-16 116.6 9.1 75 5-80 10-87 (759)
16 KOG0148 Apoptosis-promoting RN 99.2 3.2E-11 7E-16 108.3 9.1 76 2-81 161-237 (321)
17 TIGR01645 half-pint poly-U bin 99.2 5.7E-11 1.2E-15 117.9 10.7 78 5-82 204-285 (612)
18 TIGR01645 half-pint poly-U bin 99.2 4.1E-11 8.9E-16 118.9 9.6 75 5-79 107-185 (612)
19 cd00590 RRM RRM (RNA recogniti 99.2 1.3E-10 2.8E-15 80.4 9.4 70 7-76 1-73 (74)
20 TIGR01622 SF-CC1 splicing fact 99.2 9.3E-11 2E-15 111.4 11.4 80 5-84 186-269 (457)
21 TIGR01659 sex-lethal sex-letha 99.2 8.4E-11 1.8E-15 109.9 9.9 76 5-80 193-274 (346)
22 COG0724 RNA-binding proteins ( 99.2 1.2E-10 2.6E-15 98.2 9.7 75 5-79 115-193 (306)
23 smart00360 RRM RNA recognition 99.2 1.2E-10 2.5E-15 79.8 7.9 67 10-76 1-71 (71)
24 TIGR01628 PABP-1234 polyadenyl 99.2 1.3E-10 2.7E-15 113.8 10.6 76 4-79 284-362 (562)
25 TIGR01628 PABP-1234 polyadenyl 99.2 9.7E-11 2.1E-15 114.6 9.8 72 7-78 2-77 (562)
26 KOG0114 Predicted RNA-binding 99.1 2.1E-10 4.5E-15 90.3 8.4 74 6-79 19-93 (124)
27 KOG0149 Predicted RNA-binding 99.1 9.6E-11 2.1E-15 103.3 7.1 73 6-78 13-88 (247)
28 TIGR01642 U2AF_lg U2 snRNP aux 99.1 3.6E-10 7.8E-15 108.6 11.7 76 5-80 295-374 (509)
29 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.6E-10 5.7E-15 110.3 10.8 74 4-79 274-349 (481)
30 TIGR01648 hnRNP-R-Q heterogene 99.1 2.4E-10 5.3E-15 113.0 10.7 72 5-81 233-307 (578)
31 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.8E-10 8.2E-15 109.2 9.8 71 6-79 3-76 (481)
32 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.1E-10 8.8E-15 108.2 9.7 76 4-82 174-261 (509)
33 KOG0126 Predicted RNA-binding 99.1 4.3E-11 9.2E-16 102.4 2.1 84 1-84 31-118 (219)
34 KOG0113 U1 small nuclear ribon 99.1 6.4E-10 1.4E-14 101.1 8.8 73 6-78 102-178 (335)
35 TIGR01648 hnRNP-R-Q heterogene 99.0 7.4E-10 1.6E-14 109.6 9.0 74 5-78 58-135 (578)
36 KOG0122 Translation initiation 99.0 1.2E-09 2.6E-14 97.0 9.3 74 5-78 189-266 (270)
37 PF13893 RRM_5: RNA recognitio 99.0 2.7E-09 5.9E-14 73.4 7.9 54 22-77 1-55 (56)
38 KOG0117 Heterogeneous nuclear 98.9 1.4E-09 3.1E-14 103.1 6.8 75 4-83 258-333 (506)
39 KOG0108 mRNA cleavage and poly 98.9 3.1E-09 6.7E-14 102.0 8.5 82 1-82 13-99 (435)
40 KOG0415 Predicted peptidyl pro 98.9 2.2E-09 4.7E-14 99.7 6.9 78 1-78 235-316 (479)
41 KOG4207 Predicted splicing fac 98.9 2.6E-09 5.5E-14 93.2 6.1 74 5-78 13-90 (256)
42 KOG0131 Splicing factor 3b, su 98.8 3.9E-09 8.5E-14 90.3 4.9 78 4-81 8-89 (203)
43 KOG0123 Polyadenylate-binding 98.8 9.1E-09 2E-13 97.1 7.8 77 6-83 77-155 (369)
44 KOG0153 Predicted RNA-binding 98.8 1.5E-08 3.3E-13 93.7 7.5 72 6-81 229-302 (377)
45 smart00361 RRM_1 RNA recogniti 98.8 2.6E-08 5.7E-13 72.0 7.3 57 19-75 2-69 (70)
46 KOG0130 RNA-binding protein RB 98.8 1.3E-08 2.9E-13 83.7 5.9 74 5-78 72-149 (170)
47 KOG0145 RNA-binding protein EL 98.7 7.2E-08 1.6E-12 86.8 9.6 76 4-79 277-356 (360)
48 KOG0127 Nucleolar protein fibr 98.7 2.7E-08 5.9E-13 96.6 7.2 80 2-81 2-85 (678)
49 KOG0109 RNA-binding protein LA 98.7 2E-08 4.4E-13 91.2 6.0 70 7-81 4-74 (346)
50 KOG0117 Heterogeneous nuclear 98.7 4.4E-08 9.6E-13 93.2 8.3 76 3-78 81-161 (506)
51 KOG4211 Splicing factor hnRNP- 98.7 4.3E-08 9.3E-13 94.1 8.1 78 4-82 9-87 (510)
52 KOG0111 Cyclophilin-type pepti 98.7 1.6E-08 3.5E-13 89.0 4.6 80 1-80 6-89 (298)
53 KOG0127 Nucleolar protein fibr 98.7 4.8E-08 1E-12 94.9 7.8 73 6-78 118-193 (678)
54 KOG0124 Polypyrimidine tract-b 98.7 2E-08 4.2E-13 93.9 4.8 75 6-80 114-192 (544)
55 KOG0147 Transcriptional coacti 98.6 5.1E-08 1.1E-12 94.5 6.4 80 8-87 281-364 (549)
56 KOG4206 Spliceosomal protein s 98.6 1.4E-07 2.9E-12 82.9 7.4 77 7-83 11-92 (221)
57 KOG0148 Apoptosis-promoting RN 98.6 1E-07 2.3E-12 85.9 6.8 77 6-82 63-143 (321)
58 KOG0145 RNA-binding protein EL 98.6 1.8E-07 3.8E-12 84.3 8.1 77 6-82 42-122 (360)
59 KOG4676 Splicing factor, argin 98.6 9.2E-08 2E-12 89.9 6.0 79 6-84 8-92 (479)
60 KOG0144 RNA-binding protein CU 98.5 1.1E-07 2.3E-12 90.4 5.4 76 4-79 123-204 (510)
61 KOG4212 RNA-binding protein hn 98.5 4.3E-07 9.3E-12 86.6 7.9 77 4-80 43-123 (608)
62 KOG0109 RNA-binding protein LA 98.4 2.5E-07 5.4E-12 84.3 5.4 70 6-80 79-149 (346)
63 KOG4209 Splicing factor RNPS1, 98.4 3.4E-07 7.5E-12 81.4 6.2 77 4-80 100-179 (231)
64 KOG0116 RasGAP SH3 binding pro 98.4 4.2E-07 9.1E-12 87.0 7.1 75 6-80 289-366 (419)
65 KOG1548 Transcription elongati 98.4 8.1E-07 1.8E-11 82.4 7.5 73 6-78 135-218 (382)
66 KOG4205 RNA-binding protein mu 98.4 3.9E-07 8.5E-12 84.2 5.4 79 4-82 5-86 (311)
67 KOG4205 RNA-binding protein mu 98.4 6.1E-07 1.3E-11 83.0 5.8 78 6-83 98-178 (311)
68 KOG0123 Polyadenylate-binding 98.4 1.3E-06 2.7E-11 82.6 8.1 69 7-78 3-72 (369)
69 KOG0110 RNA-binding protein (R 98.3 1.1E-06 2.3E-11 87.6 7.7 74 6-79 516-596 (725)
70 KOG4212 RNA-binding protein hn 98.3 8.5E-07 1.8E-11 84.6 6.5 74 2-77 533-607 (608)
71 KOG0131 Splicing factor 3b, su 98.2 1.5E-06 3.4E-11 74.5 4.9 73 6-78 97-174 (203)
72 KOG0144 RNA-binding protein CU 98.2 2.5E-06 5.4E-11 81.2 6.7 74 6-79 35-115 (510)
73 KOG0124 Polypyrimidine tract-b 98.2 3E-06 6.5E-11 79.5 6.9 78 6-83 211-292 (544)
74 KOG0146 RNA-binding protein ET 98.2 2.1E-06 4.5E-11 77.8 5.1 77 3-79 283-363 (371)
75 KOG0533 RRM motif-containing p 98.2 5.9E-06 1.3E-10 74.0 7.9 78 5-82 83-163 (243)
76 KOG0106 Alternative splicing f 98.2 2.1E-06 4.6E-11 75.6 4.6 69 6-79 2-71 (216)
77 KOG0132 RNA polymerase II C-te 98.2 3.9E-06 8.5E-11 84.5 7.0 69 5-76 421-490 (894)
78 KOG4454 RNA binding protein (R 98.2 8.5E-07 1.8E-11 78.1 1.9 77 4-80 8-86 (267)
79 KOG4661 Hsp27-ERE-TATA-binding 98.1 5.8E-06 1.3E-10 81.2 7.0 80 3-82 403-486 (940)
80 KOG4208 Nucleolar RNA-binding 98.0 1.6E-05 3.5E-10 69.3 6.5 73 6-78 50-127 (214)
81 KOG0147 Transcriptional coacti 97.9 4.7E-06 1E-10 81.1 2.1 73 6-78 180-255 (549)
82 PF08777 RRM_3: RNA binding mo 97.9 4.2E-05 9.2E-10 60.1 6.4 52 6-60 2-53 (105)
83 KOG4660 Protein Mei2, essentia 97.8 1E-05 2.2E-10 78.9 3.3 68 5-74 75-143 (549)
84 KOG0110 RNA-binding protein (R 97.8 1.5E-05 3.3E-10 79.5 4.3 73 6-78 614-690 (725)
85 PF14605 Nup35_RRM_2: Nup53/35 97.8 4.7E-05 1E-09 52.8 5.0 52 6-61 2-53 (53)
86 KOG4211 Splicing factor hnRNP- 97.7 8.2E-05 1.8E-09 71.9 7.0 74 5-78 103-179 (510)
87 KOG1457 RNA binding protein (c 97.7 0.00022 4.8E-09 63.3 8.7 77 5-81 34-118 (284)
88 KOG0151 Predicted splicing reg 97.7 0.00017 3.8E-09 72.4 8.6 72 5-76 174-252 (877)
89 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00034 7.4E-09 54.8 7.9 73 5-78 6-88 (100)
90 KOG1995 Conserved Zn-finger pr 97.5 7.4E-05 1.6E-09 69.7 3.7 78 4-81 65-154 (351)
91 KOG1457 RNA binding protein (c 97.5 9.9E-05 2.1E-09 65.5 4.0 62 6-68 211-273 (284)
92 KOG0146 RNA-binding protein ET 97.5 0.00013 2.9E-09 66.2 4.5 63 4-66 18-83 (371)
93 PF11608 Limkain-b1: Limkain b 97.4 0.00092 2E-08 51.0 7.4 66 6-78 3-74 (90)
94 KOG3152 TBP-binding protein, a 97.1 0.00029 6.2E-09 63.5 2.2 66 6-71 75-156 (278)
95 KOG1190 Polypyrimidine tract-b 97.0 0.0029 6.2E-08 60.5 8.5 72 5-78 297-370 (492)
96 PF08952 DUF1866: Domain of un 97.0 0.0031 6.8E-08 52.5 7.7 74 1-79 23-105 (146)
97 KOG0106 Alternative splicing f 97.0 0.00064 1.4E-08 60.0 3.3 68 4-76 98-166 (216)
98 KOG4210 Nuclear localization s 97.0 0.00069 1.5E-08 62.1 3.6 76 6-81 185-264 (285)
99 KOG4206 Spliceosomal protein s 96.9 0.0045 9.7E-08 54.8 7.9 76 1-78 142-219 (221)
100 COG5175 MOT2 Transcriptional r 96.9 0.0021 4.6E-08 60.1 6.1 70 7-76 116-198 (480)
101 PF04059 RRM_2: RNA recognitio 96.8 0.012 2.5E-07 45.9 8.9 64 6-69 2-71 (97)
102 KOG4307 RNA binding protein RB 96.6 0.0085 1.9E-07 60.6 8.4 74 3-76 865-942 (944)
103 KOG0120 Splicing factor U2AF, 96.4 0.0034 7.4E-08 61.6 4.5 79 5-83 289-371 (500)
104 KOG0226 RNA-binding proteins [ 96.2 0.0065 1.4E-07 54.9 4.5 73 4-76 189-265 (290)
105 KOG0129 Predicted RNA-binding 96.1 0.016 3.5E-07 56.7 7.1 54 6-60 260-322 (520)
106 PLN03120 nucleic acid binding 96.0 0.0059 1.3E-07 55.4 3.1 41 147-190 117-157 (260)
107 KOG1855 Predicted RNA-binding 95.9 0.0054 1.2E-07 58.8 2.9 61 5-65 231-307 (484)
108 KOG1548 Transcription elongati 95.6 0.041 9E-07 51.7 7.4 77 4-81 264-352 (382)
109 KOG1190 Polypyrimidine tract-b 95.5 0.035 7.7E-07 53.2 6.6 73 5-78 414-488 (492)
110 KOG0129 Predicted RNA-binding 95.4 0.031 6.7E-07 54.7 6.0 73 6-79 371-452 (520)
111 KOG1365 RNA-binding protein Fu 95.4 0.011 2.5E-07 56.2 2.9 70 7-76 163-238 (508)
112 KOG0128 RNA-binding protein SA 95.3 0.0017 3.7E-08 66.4 -3.1 67 6-72 668-737 (881)
113 KOG0120 Splicing factor U2AF, 94.7 0.091 2E-06 51.8 7.0 58 21-78 425-489 (500)
114 KOG1996 mRNA splicing factor [ 94.5 0.1 2.2E-06 48.3 6.4 60 19-78 300-364 (378)
115 KOG4285 Mitotic phosphoprotein 94.3 0.18 3.8E-06 46.8 7.5 73 5-81 197-270 (350)
116 KOG4307 RNA binding protein RB 94.1 0.031 6.6E-07 56.7 2.3 79 5-83 434-516 (944)
117 KOG1365 RNA-binding protein Fu 94.0 0.058 1.3E-06 51.5 3.9 73 6-78 281-359 (508)
118 KOG0112 Large RNA-binding prot 93.6 0.016 3.4E-07 60.0 -0.6 72 5-76 372-446 (975)
119 KOG1456 Heterogeneous nuclear 93.6 0.36 7.7E-06 46.2 8.3 73 5-79 287-361 (494)
120 PF10309 DUF2414: Protein of u 93.3 0.43 9.3E-06 34.3 6.5 51 6-61 6-59 (62)
121 KOG0105 Alternative splicing f 93.1 0.27 5.9E-06 43.0 6.1 61 4-68 114-175 (241)
122 KOG2314 Translation initiation 92.9 0.13 2.9E-06 51.1 4.5 72 6-78 59-141 (698)
123 PF08675 RNA_bind: RNA binding 92.8 0.62 1.3E-05 35.6 7.0 66 6-81 10-76 (87)
124 KOG4849 mRNA cleavage factor I 92.7 0.11 2.3E-06 49.2 3.4 73 6-78 81-159 (498)
125 PF03467 Smg4_UPF3: Smg-4/UPF3 92.6 0.22 4.7E-06 42.6 4.9 68 5-72 7-84 (176)
126 KOG0115 RNA-binding protein p5 91.7 0.16 3.4E-06 46.2 3.0 76 6-81 32-114 (275)
127 KOG2202 U2 snRNP splicing fact 91.5 0.1 2.3E-06 47.1 1.7 59 20-78 83-145 (260)
128 KOG0128 RNA-binding protein SA 91.3 0.18 3.9E-06 52.2 3.4 73 6-78 737-812 (881)
129 PF07576 BRAP2: BRCA1-associat 91.1 1.6 3.6E-05 34.6 8.1 64 7-70 14-81 (110)
130 PF15023 DUF4523: Protein of u 90.6 1 2.2E-05 37.9 6.6 65 6-74 87-155 (166)
131 KOG1456 Heterogeneous nuclear 89.3 1.8 3.8E-05 41.6 7.9 67 10-78 127-196 (494)
132 PF04847 Calcipressin: Calcipr 88.5 1.7 3.8E-05 37.5 6.9 58 18-78 8-68 (184)
133 KOG0112 Large RNA-binding prot 88.3 0.67 1.4E-05 48.5 4.8 72 6-80 456-530 (975)
134 PLN03121 nucleic acid binding 88.1 0.53 1.1E-05 42.4 3.5 41 130-170 147-190 (243)
135 KOG2253 U1 snRNP complex, subu 87.8 0.29 6.3E-06 49.4 1.8 68 5-78 40-108 (668)
136 KOG2068 MOT2 transcription fac 87.2 0.25 5.4E-06 46.2 0.9 70 7-76 79-158 (327)
137 KOG0804 Cytoplasmic Zn-finger 86.2 2 4.3E-05 42.0 6.4 66 5-70 74-142 (493)
138 KOG2135 Proteins containing th 85.1 0.47 1E-05 46.4 1.6 67 7-76 374-441 (526)
139 PF15513 DUF4651: Domain of un 84.2 1.2 2.6E-05 32.1 3.0 19 20-38 9-27 (62)
140 KOG2591 c-Mpl binding protein, 82.6 2.3 5.1E-05 42.6 5.3 65 6-74 176-245 (684)
141 KOG2193 IGF-II mRNA-binding pr 82.6 1.3 2.7E-05 43.2 3.3 65 7-77 3-72 (584)
142 PF01296 Galanin: Galanin; In 78.8 0.37 8.1E-06 29.2 -1.0 26 126-151 4-29 (29)
143 PF03880 DbpA: DbpA RNA bindin 74.7 3.4 7.4E-05 29.9 2.9 59 15-78 11-74 (74)
144 KOG4008 rRNA processing protei 71.8 2.9 6.2E-05 37.7 2.2 39 1-39 36-74 (261)
145 KOG2416 Acinus (induces apopto 70.5 3.4 7.4E-05 41.7 2.7 69 6-77 445-518 (718)
146 KOG4210 Nuclear localization s 69.6 2.4 5.3E-05 38.9 1.4 74 5-78 88-165 (285)
147 KOG4676 Splicing factor, argin 68.5 3.9 8.4E-05 39.5 2.5 70 6-75 53-124 (479)
148 PF03468 XS: XS domain; Inter 65.4 8.9 0.00019 30.6 3.7 58 7-64 10-77 (116)
149 PRK14548 50S ribosomal protein 54.2 35 0.00075 25.9 5.0 54 7-60 22-77 (84)
150 PF11767 SET_assoc: Histone ly 44.5 90 0.0019 22.5 5.7 54 16-75 11-65 (66)
151 TIGR03636 L23_arch archaeal ri 40.2 76 0.0016 23.6 4.9 54 7-60 15-70 (77)
152 COG0724 RNA-binding proteins ( 35.7 62 0.0013 26.6 4.3 39 4-42 224-262 (306)
153 PF07292 NID: Nmi/IFP 35 domai 35.5 28 0.0006 26.7 1.9 23 4-26 51-73 (88)
154 smart00071 Galanin Galanin. Ga 34.6 7.4 0.00016 30.2 -1.3 29 125-153 15-43 (103)
155 PF10567 Nab6_mRNP_bdg: RNA-re 33.1 55 0.0012 30.6 3.8 54 6-59 16-79 (309)
156 KOG4410 5-formyltetrahydrofola 33.1 57 0.0012 30.6 3.8 49 6-57 331-380 (396)
157 KOG2891 Surface glycoprotein [ 32.7 38 0.00082 31.6 2.7 67 1-67 143-246 (445)
158 PF02714 DUF221: Domain of unk 30.2 51 0.0011 29.9 3.1 31 47-79 1-32 (325)
159 PF13600 DUF4140: N-terminal d 25.0 45 0.00097 25.3 1.5 33 3-37 21-55 (104)
160 COG5353 Uncharacterized protei 24.1 2.5E+02 0.0055 23.8 5.9 50 6-55 88-153 (161)
161 PF11492 Dicistro_VP4: Cricket 23.5 40 0.00086 23.8 0.9 18 215-232 36-53 (56)
162 PF09707 Cas_Cas2CT1978: CRISP 23.1 1.5E+02 0.0033 22.5 4.1 47 6-52 26-72 (86)
163 COG0351 ThiD Hydroxymethylpyri 22.2 72 0.0016 29.2 2.5 23 121-144 216-238 (263)
164 PRK11508 sulfur transfer prote 21.8 2.6E+02 0.0057 22.1 5.4 38 129-166 35-75 (109)
165 PF11411 DNA_ligase_IV: DNA li 21.8 59 0.0013 20.9 1.3 16 16-31 20-35 (36)
166 PF14893 PNMA: PNMA 21.2 74 0.0016 30.0 2.4 49 6-54 19-72 (331)
167 KOG4574 RNA-binding protein (c 20.8 77 0.0017 33.7 2.6 68 10-80 303-373 (1007)
168 PF11848 DUF3368: Domain of un 20.7 1.5E+02 0.0032 19.7 3.2 24 120-143 22-45 (48)
No 1
>PLN03121 nucleic acid binding protein; Provisional
Probab=100.00 E-value=1.1e-82 Score=559.75 Aligned_cols=241 Identities=71% Similarity=1.020 Sum_probs=227.4
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
|+++++||||+||++.+||++|++||++||+|.+|+|++++++.++|||+|++++++++|++|||.+|.|++|.|++|++
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 89999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCccccCccccCcchhhhhHHHHHHHHhhccceecHHHHHHHHHhhhhcCCcHHHHHHHH
Q 026156 81 YTDEPNPWIS-SWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVA 159 (242)
Q Consensus 81 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~a~~~a~~iva~~LA~Gyvl~~~ai~kA~~~Dekh~~ss~~~~~v~ 159 (242)
|.+++++|+. ++..++ ..+...+.+.+..+|++++++||+||++||||||+||+|+++|||+|||+||||++++++|.
T Consensus 81 y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~a~~~aq~Vv~tmLAkGyvLgkda~~KAkafDE~h~lss~a~a~v~ 159 (243)
T PLN03121 81 YEDEFDFWNRPSWDTED-ISTHNYETNQFASTPGEAVTVAQEVVKTMLAKGYVLGKDALSKAKAFDESHQVSATAAAKVA 159 (243)
T ss_pred cccCcccccCccccccc-cccccccccccCCCchhhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCccHhhhhhhh
Confidence 9999998876 223333 33444555667789999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccchhhhhHHHHHHHhhhhhchhHHhhHhhhhhhhhhhhcccccccchhhhhhhhhHhhHHHHHHHHHHhhccc
Q 026156 160 ELSNRIGLTDKINASMEAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAH 239 (242)
Q Consensus 160 ~~d~k~g~t~k~~~g~~~~~~vD~k~~vs~~t~sa~~~~~~~~~~~~~~~~~~~y~~~ga~w~~~a~~~~a~~~~~~~~~ 239 (242)
+||+||||||||++|+++||+|||||||||+||+|+.+|||++++||++||+||||++||+||||||+||||||.|+|++
T Consensus 160 ~~d~~iglt~k~~~g~~~vk~vDeky~vs~~tksA~~aa~~~~~~a~sai~~~~Y~~~Ga~w~sga~~~~akaa~~~g~~ 239 (243)
T PLN03121 160 ELSKRIGLTDKIFAGMEAVRSVDEKYHVSEFTKSAATATGRTAAAAANAVVNSSYFSKGALWVSDALTRAAKAAADLGAH 239 (243)
T ss_pred hhhhhccchhhhhhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhcchhhcchHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 026156 240 GAK 242 (242)
Q Consensus 240 ~~~ 242 (242)
|++
T Consensus 240 ~~~ 242 (243)
T PLN03121 240 GSN 242 (243)
T ss_pred ccC
Confidence 974
No 2
>PLN03120 nucleic acid binding protein; Provisional
Probab=100.00 E-value=5.5e-75 Score=517.10 Aligned_cols=225 Identities=43% Similarity=0.604 Sum_probs=209.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCCCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYTDE 84 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~~~ 84 (242)
.++|||+|||+.+||++|++||++||+|++|+|++++++.+||||+|++++++++|++|||.+|+|++|+|+++.++..|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~~~p 83 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDYQLP 83 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCCCCC
Confidence 58999999999999999999999999999999999887778999999999999999999999999999999999998877
Q ss_pred CCCCCCCCCCCCCCCCCccccCccccCcchhhhhHHHHHHHHhhccceecHHHHHHHHHhhhhcCCcHHHHHHHHhhhhc
Q 026156 85 PNPWISSWGFDENSGSTTTHVGQFVSTPGEAVTVAQDAVKTMIAKGYVLSKDALVKAKALDESYGLSASAAAKVAELSNR 164 (242)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~a~~~a~~iva~~LA~Gyvl~~~ai~kA~~~Dekh~~ss~~~~~v~~~d~k 164 (242)
+......+. +.....|+.+++++|+||++||||||+||||||+|||+|||+||||++|+++|++||+|
T Consensus 84 ~~~~~~~~~------------~~~~~~~~~~~~~a~~vva~mLAkGy~l~~dA~~kAk~fDekH~~ss~a~a~v~~~d~k 151 (260)
T PLN03120 84 PEALAPLSS------------NSPASGAESAVKKAEDVVSSMLAKGFILGKDAVNKAKAFDEKHQLTSTASAKVASLDKK 151 (260)
T ss_pred ccccccccc------------ccCCCCccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhchHHHHHHHHHhhhhh
Confidence 664322100 11223567789999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhhHH----HHHHHhhhhhchhHHhhHhhhhhhhhhhhcccccccchhhhhhhhhHhhHHHHHHHHHHhhcccC
Q 026156 165 IGLTDKINASM----EAIKSVDEKYHVSDVTKSAASFTGKTAVAAGTAVVNSRYFAKGALWVSGVLERAAKAAADLGAHG 240 (242)
Q Consensus 165 ~g~t~k~~~g~----~~~~~vD~k~~vs~~t~sa~~~~~~~~~~~~~~~~~~~y~~~ga~w~~~a~~~~a~~~~~~~~~~ 240 (242)
|||||||++|+ +++|+|||||||||||++|+.++||++++||++||+||||++||+||||||+||||||.|+|+++
T Consensus 152 ~gltek~~~g~~~v~~~~k~vDeky~vs~kt~sa~~~~~~~~~~a~sai~~~~y~~~ga~w~~~a~~~~a~aa~~~~~~~ 231 (260)
T PLN03120 152 IGLSEKLSAGTAVVNEKVKEVDQKYQVSEKTKSALAAAEQKVSSAGSAIMKNRYVLTGASWVTGAFNKVAKAAEEVGQKT 231 (260)
T ss_pred cCcccccccchHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999 89999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 026156 241 A 241 (242)
Q Consensus 241 ~ 241 (242)
+
T Consensus 232 ~ 232 (260)
T PLN03120 232 K 232 (260)
T ss_pred H
Confidence 6
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.56 E-value=4.7e-14 Score=116.43 Aligned_cols=80 Identities=20% Similarity=0.316 Sum_probs=71.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+||++|+++|+.||+|.+|.|+.+.. ..+||||+|.++++|+.|+ .|||..|+|+.|.|..+.+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 36899999999999999999999999999999997753 3479999999999999996 6999999999999998765
Q ss_pred CCCC
Q 026156 81 YTDE 84 (242)
Q Consensus 81 ~~~~ 84 (242)
.+..
T Consensus 114 ~~~~ 117 (144)
T PLN03134 114 RPSA 117 (144)
T ss_pred CCCC
Confidence 4443
No 4
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1.9e-14 Score=101.26 Aligned_cols=67 Identities=28% Similarity=0.506 Sum_probs=61.1
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-C-CcCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156 8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-G-ECGGTAYVTFSNAYALETAV-LLSGATIVDQPVC 74 (242)
Q Consensus 8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~-~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~ 74 (242)
|||+|||+.+|+++|+++|+.||+|..+.+..+ . ...++|||+|.++++|+.|+ .|||..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999985 2 23479999999999999996 5999999999885
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.44 E-value=6.7e-13 Score=121.46 Aligned_cols=76 Identities=28% Similarity=0.410 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
+++|||+|||+.+++++|+++|+.||.|++|+|+.+.. ..+||||+|.++++|..| ..|||..|+|+.|+|....+
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 35799999999999999999999999999999998742 457999999999999999 57999999999999986543
No 6
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=4.6e-13 Score=122.59 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=71.9
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe-ecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII-RSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~-~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
+.+.|+|+|||+...|-||+.+|.+||+|.+|+|+ +++++++|+||||+++++|++| -.|+|+.+.||.|.|..+...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 44789999999999999999999999999999998 5567789999999999999999 799999999999999977554
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=1.3e-12 Score=93.12 Aligned_cols=67 Identities=31% Similarity=0.530 Sum_probs=58.1
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcCCCeecCeeEE
Q 026156 8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLSGATIVDQPVC 74 (242)
Q Consensus 8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~ 74 (242)
|+|+|||+.+++++|++||+.||.|..|.+..++. ..++|||+|.+++.|..|+ .++|..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999997643 3479999999999999995 5666999999874
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.40 E-value=1.5e-12 Score=119.10 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
..+|||+|||+.++|++|+++|+.||+|.+|+|+++.. ..+||||+|.++++|+.|+ .|||..|.|+.|.|..+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 46999999999999999999999999999999998743 3479999999999999995 7999999999999986643
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=7e-12 Score=86.46 Aligned_cols=70 Identities=30% Similarity=0.431 Sum_probs=63.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
+|+|+|||+.+++++|+++|..||+|.++.+..+.+ ..++|||+|.+++.++.| ..++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999987642 347999999999999999 5789999999998873
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.34 E-value=4.5e-12 Score=118.37 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=68.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+|||+++||++|+++|+.||+|++|+|+.+.. ..+||||+|.++++|+.|+ .|||..|.+++|+|..+.
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 357999999999999999999999999999999998744 3469999999999999995 799999999999998653
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=3.6e-12 Score=103.54 Aligned_cols=78 Identities=27% Similarity=0.309 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
.+||||+|||..++|++|.++||.||+|..|.|--+..+ -+|+||+|-.+++|+.| ..+||+.|++++|.|.-...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~G 115 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAG 115 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecccc
Confidence 369999999999999999999999999999998766543 36999999999999999 58899999999999985544
Q ss_pred CC
Q 026156 81 YT 82 (242)
Q Consensus 81 ~~ 82 (242)
+.
T Consensus 116 F~ 117 (153)
T KOG0121|consen 116 FV 117 (153)
T ss_pred ch
Confidence 43
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=6e-12 Score=106.79 Aligned_cols=77 Identities=25% Similarity=0.279 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~ 82 (242)
..+.|||+||++.+++.||+..|+.||+|.+|.|-.. +.+||||+|+++.+|+.| -.|||..|+|..|.|+.....+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn--PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN--PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec--CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4579999999999999999999999999999999873 357999999999999999 6999999999999998765433
No 13
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.4e-12 Score=107.38 Aligned_cols=76 Identities=18% Similarity=0.106 Sum_probs=70.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+.|++|+++|.+||.|..|+|....+...||||+|+++.+|+.| .--||..++|+.|.|.....
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 47999999999999999999999999999999998777678999999999999999 58899999999999996643
No 14
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.27 E-value=2e-11 Score=115.83 Aligned_cols=74 Identities=28% Similarity=0.466 Sum_probs=68.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
.++|||+|||+.+++++|++||+.||+|.+|.|+.+.. ..++|||+|.+.+.|..|+.|+|..|.|++|.|...
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 47999999999999999999999999999999997643 347999999999999999999999999999999864
No 15
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=2.3e-11 Score=116.64 Aligned_cols=75 Identities=24% Similarity=0.311 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCH--HHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNA--YALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~--~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
..+|||+||++.+++++|+..|+.||.|.+|+|+++.+ .+||||+|..+ ..+.+| -.|||..+.|+.|+|..+.+
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 36899999999999999999999999999999998766 68999999988 678899 58999999999999987654
No 16
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=3.2e-11 Score=108.33 Aligned_cols=76 Identities=25% Similarity=0.312 Sum_probs=69.5
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
++++++|||+||++.+||++||+.|+.||+|.+|++..+ .+|+||.|+..++|-.| +.+||++|.|+.|++. |+.
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs-WGK 236 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS-WGK 236 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHHHhcCceeCceEEEEe-ccc
Confidence 467899999999999999999999999999999999976 46999999999999999 7999999999999986 544
Q ss_pred C
Q 026156 81 Y 81 (242)
Q Consensus 81 ~ 81 (242)
.
T Consensus 237 e 237 (321)
T KOG0148|consen 237 E 237 (321)
T ss_pred c
Confidence 3
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=5.7e-11 Score=117.91 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=70.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+++++|+++|+.||.|.+++|.++.. ..+||||+|.+.+++..| ..|||..|+|+.|+|..+-.
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 36899999999999999999999999999999998743 357999999999999999 59999999999999998765
Q ss_pred CC
Q 026156 81 YT 82 (242)
Q Consensus 81 ~~ 82 (242)
.+
T Consensus 284 pP 285 (612)
T TIGR01645 284 PP 285 (612)
T ss_pred Cc
Confidence 43
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.21 E-value=4.1e-11 Score=118.92 Aligned_cols=75 Identities=17% Similarity=0.157 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+||++.++|++|+++|+.||.|.+|.|+.+.. ..+||||+|.++++++.|+ .|||..|+|+.|.|.+..
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 47899999999999999999999999999999997743 3579999999999999995 799999999999998543
No 19
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.21 E-value=1.3e-10 Score=80.44 Aligned_cols=70 Identities=31% Similarity=0.490 Sum_probs=63.6
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
+|+|+|||+.+++++|+++|..||.|..+.+..+.. ..++|||+|.+++++..| ..+++..+.|+.+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999999999999997653 346999999999999999 6889999999999885
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.21 E-value=9.3e-11 Score=111.35 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=71.5
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+||++.+|+++|+++|+.||.|.+|.+..+.. ..++|||+|.+++.|..|+ .|||..|.|+.|.|..+.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 47999999999999999999999999999999997754 2479999999999999995 7999999999999998775
Q ss_pred CCCC
Q 026156 81 YTDE 84 (242)
Q Consensus 81 ~~~~ 84 (242)
....
T Consensus 266 ~~~~ 269 (457)
T TIGR01622 266 STYL 269 (457)
T ss_pred CCcc
Confidence 5443
No 21
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.19 E-value=8.4e-11 Score=109.87 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=66.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a 78 (242)
.++|||+|||+.+||++|+++|+.||.|++|+|+++.. ..++|||+|.+.++|+.| ..||+..|.+ ++|.|..+
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 46899999999999999999999999999999998743 236999999999999999 5799999876 68888866
Q ss_pred CC
Q 026156 79 GE 80 (242)
Q Consensus 79 ~~ 80 (242)
.+
T Consensus 273 ~~ 274 (346)
T TIGR01659 273 EE 274 (346)
T ss_pred Cc
Confidence 54
No 22
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.19 E-value=1.2e-10 Score=98.20 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=68.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
.++|||+||++.+++++|+++|..||.|..|.+..+. ...++|||+|.+++.+..| ..++|..|.|+.|.|....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 3799999999999999999999999999999999874 2457999999999999999 6889999999999999854
No 23
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=1.2e-10 Score=79.85 Aligned_cols=67 Identities=30% Similarity=0.513 Sum_probs=59.8
Q ss_pred EeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 10 VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
|+|||+.+++++|+++|+.||.|..+.+..+.. ..++|||+|.+++.+..| ..|+|..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999987632 346999999999999999 5889999999998873
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=1.3e-10 Score=113.77 Aligned_cols=76 Identities=22% Similarity=0.379 Sum_probs=68.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
...+|||+||++.+++++|+++|+.||.|.+|+++.+. ...++|||+|.++++|..| ..|||..|+|++|.|..+.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~ 362 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQ 362 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEecc
Confidence 34689999999999999999999999999999999774 2357999999999999999 5899999999999997654
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.17 E-value=9.7e-11 Score=114.57 Aligned_cols=72 Identities=25% Similarity=0.359 Sum_probs=66.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEec
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRW 78 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a 78 (242)
+|||+||++++||++|+++|+.||.|.+|+++++.. ..++|||+|.++++|+.|+ .||+..|.|+.|+|...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 799999999999999999999999999999998754 3479999999999999995 89999999999999754
No 26
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=2.1e-10 Score=90.33 Aligned_cols=74 Identities=19% Similarity=0.351 Sum_probs=69.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
+-+||.|||.++|.+++.++|+.||.|..|+|-.+.++.++|||.|++-.+|.+| -.|+|..+.++.+.|-.|.
T Consensus 19 riLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 5799999999999999999999999999999998888889999999999999999 6999999999999998653
No 27
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=9.6e-11 Score=103.33 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
++|||+||+|.++.+.||++|..||+|.+..++.|+. +++++||||+|.++|.+|+.=.+-.|+||+-.+..+
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchh
Confidence 5799999999999999999999999999999998854 347999999999999999888889999999887654
No 28
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.13 E-value=3.6e-10 Score=108.60 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=68.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~ 80 (242)
.++|||+|||+.+++++|+++|+.||.|..+.|+.+.. ..+||||+|.+++.|..|+ .|||..|+|+.|.|..+..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 36899999999999999999999999999999987632 3579999999999999995 8999999999999997743
No 29
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.13 E-value=2.6e-10 Score=110.26 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=67.4
Q ss_pred CCcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~ 79 (242)
..++|||+||++ .+|+++|+++|+.||.|.+|+++.+. .++|||+|.++++|..|+ .|||..|.|++|.|..+.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 347999999998 69999999999999999999998763 479999999999999995 799999999999998763
No 30
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.13 E-value=2.4e-10 Score=112.98 Aligned_cols=72 Identities=24% Similarity=0.225 Sum_probs=66.0
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccC--CCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHC--GDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~--G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.++|||+||+++++|++|+++|+.| |+|++|++++ .+|||+|+++++|++|+ .|||.+|+|+.|+|..+.+.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 4789999999999999999999999 9999998874 49999999999999995 79999999999999977543
No 31
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.09 E-value=3.8e-10 Score=109.15 Aligned_cols=71 Identities=21% Similarity=0.160 Sum_probs=65.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHh---cCCCeecCeeEEEEecC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVL---LSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~---Lng~~l~g~~I~V~~a~ 79 (242)
++|||+|||+.++|++|+++|+.||+|.+|.++++ .++|||+|+++++|+.|+. +|+..|.|++|.|..+.
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~ 76 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYST 76 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecC
Confidence 69999999999999999999999999999999864 3699999999999999963 68999999999998664
No 32
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=4.1e-10 Score=108.24 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=64.6
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccC------------CCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHC------------GDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ 71 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~------------G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~ 71 (242)
..++|||+|||+.+|+++|++||+.| +.|..+.+..+ .+||||+|.+++.|..|+.|||..|.|+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~---kg~afVeF~~~e~A~~Al~l~g~~~~g~ 250 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE---KNFAFLEFRTVEEATFAMALDSIIYSNV 250 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC---CCEEEEEeCCHHHHhhhhcCCCeEeeCc
Confidence 45799999999999999999999864 45556655433 4699999999999999999999999999
Q ss_pred eEEEEecCCCC
Q 026156 72 PVCIIRWGEYT 82 (242)
Q Consensus 72 ~I~V~~a~~~~ 82 (242)
.|.|.+..++.
T Consensus 251 ~l~v~r~~~~~ 261 (509)
T TIGR01642 251 FLKIRRPHDYI 261 (509)
T ss_pred eeEecCccccC
Confidence 99998766654
No 33
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=4.3e-11 Score=102.36 Aligned_cols=84 Identities=24% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
||.+..-|||+|||+..||.||--.||+||.|.+|.|++|..+ .+|||..|+|..+---| -.|||..|.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 3555678999999999999999999999999999999998653 47999999999998888 5999999999999999
Q ss_pred ecCCCCCC
Q 026156 77 RWGEYTDE 84 (242)
Q Consensus 77 ~a~~~~~~ 84 (242)
+...|..|
T Consensus 111 Hv~~Yk~p 118 (219)
T KOG0126|consen 111 HVSNYKKP 118 (219)
T ss_pred ecccccCC
Confidence 99888765
No 34
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=6.4e-10 Score=101.07 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=67.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+|+||+-|+..++|.+|++.|++||+|+.|.|+.+.. +.+||||+|+++.+...| ...+|..|+|+.|.|..-
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 6999999999999999999999999999999998843 347999999999999999 799999999999999743
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.03 E-value=7.4e-10 Score=109.58 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=64.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~V~~a 78 (242)
.++|||+|||++++|++|+++|+.||.|.+|+|+++. ...+||||+|.++++|+.| ..|||..|. |+.|.|...
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4799999999999999999999999999999999873 2347999999999999999 589999985 777777543
No 36
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.2e-09 Score=97.02 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
.++|.|+|||.+++|.+|+++|-.||.|..|.|.++.++ .+||||+|.+.+.|..| -.|||.-++.-.|+|.-.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 468999999999999999999999999999999998664 47999999999999999 599999999999999844
No 37
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.99 E-value=2.7e-09 Score=73.44 Aligned_cols=54 Identities=22% Similarity=0.417 Sum_probs=48.2
Q ss_pred HHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156 22 IHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR 77 (242)
Q Consensus 22 LrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~ 77 (242)
|+++|+.||+|.+|.+.+.. .++|||+|.++++|+.| ..|||..+.|++|+|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 68999999999999998655 47999999999999999 57999999999999974
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.94 E-value=1.4e-09 Score=103.12 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~ 82 (242)
....+||.||+.++||+.|++.|+.||+|+.|+.++| ||||+|.+.++|.+| ..+||.+|+|..|.|+.+.+..
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 4567999999999999999999999999999998865 999999999999999 6999999999999999886544
Q ss_pred C
Q 026156 83 D 83 (242)
Q Consensus 83 ~ 83 (242)
.
T Consensus 333 k 333 (506)
T KOG0117|consen 333 K 333 (506)
T ss_pred h
Confidence 3
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.92 E-value=3.1e-09 Score=101.98 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=73.1
Q ss_pred CCCCC-cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156 1 MYAGG-YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCI 75 (242)
Q Consensus 1 M~~~~-~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V 75 (242)
|++.. +.|||+||++.++|++|.++|+..|.|.++++..|+++ ++|+|++|.+++.+..| -.|||.++.|++|+|
T Consensus 13 ~~~~~~~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 13 NSPGLSSSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cCcccccceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 45555 89999999999999999999999999999999987553 47999999999999999 699999999999999
Q ss_pred EecCCCC
Q 026156 76 IRWGEYT 82 (242)
Q Consensus 76 ~~a~~~~ 82 (242)
.......
T Consensus 93 ~~~~~~~ 99 (435)
T KOG0108|consen 93 NYASNRK 99 (435)
T ss_pred ecccccc
Confidence 8765544
No 40
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.2e-09 Score=99.75 Aligned_cols=78 Identities=26% Similarity=0.303 Sum_probs=70.7
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
|-|-+..+||.-|.|-+|++||.-+||.||+|.+|+++++..+ -++|||+|++.++++.| ..|++..|++++|+|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3455689999999999999999999999999999999998543 37999999999999999 8999999999999997
Q ss_pred ec
Q 026156 77 RW 78 (242)
Q Consensus 77 ~a 78 (242)
..
T Consensus 315 FS 316 (479)
T KOG0415|consen 315 FS 316 (479)
T ss_pred hh
Confidence 43
No 41
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.89 E-value=2.6e-09 Score=93.18 Aligned_cols=74 Identities=22% Similarity=0.230 Sum_probs=67.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
-.+|.|-||.+.++.++|+..|.+||.|-+|-|.+|.- ..+||||-|.+..+|+.| -.|+|.+|+|+.|.|+.+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 36899999999999999999999999999999998843 457999999999999999 599999999999988754
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.83 E-value=3.9e-09 Score=90.27 Aligned_cols=78 Identities=17% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
...||||+||++.++++-|.|+|-++|+|.+|.+.++.. ..+|||++|.+++.++-| ..||...|.|++|+|..++
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 357999999999999999999999999999999998754 347999999999999999 6899999999999999887
Q ss_pred CC
Q 026156 80 EY 81 (242)
Q Consensus 80 ~~ 81 (242)
..
T Consensus 88 ~~ 89 (203)
T KOG0131|consen 88 AH 89 (203)
T ss_pred cc
Confidence 43
No 43
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=9.1e-09 Score=97.07 Aligned_cols=77 Identities=14% Similarity=0.258 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYTD 83 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~~ 83 (242)
..|||.||++.++.++|.++|+.||+|.+|++..+.+ .+++ ||+|+++++|.+| -.+||..+.|+.|.|.+..+-..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 4599999999999999999999999999999997744 4567 9999999999999 69999999999999987755433
No 44
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=93.70 Aligned_cols=72 Identities=28% Similarity=0.401 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH--HhcCCCeecCeeEEEEecCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA--VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA--l~Lng~~l~g~~I~V~~a~~~ 81 (242)
.|+||+||.+.++|.+|+++|.+||+|++|.+... .+.|||+|....+|+.| ..+|...|+|++|.|. |+..
T Consensus 229 ~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~-Wg~~ 302 (377)
T KOG0153|consen 229 KTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK-WGRP 302 (377)
T ss_pred eEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEE-eCCC
Confidence 68999999999999999999999999999999854 35899999999999999 5889889999999999 8765
No 45
>smart00361 RRM_1 RNA recognition motif.
Probab=98.78 E-value=2.6e-08 Score=71.96 Aligned_cols=57 Identities=25% Similarity=0.324 Sum_probs=49.0
Q ss_pred HHHHHHHhc----cCCCceEEE-EeecC-----CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156 19 EKDIHEFFS----HCGDPVHVE-IIRSG-----ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCI 75 (242)
Q Consensus 19 E~dLrefFs----~~G~I~~V~-l~~~~-----~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V 75 (242)
+++|+++|+ .||.|.+|. +..+. ...+++||+|.++++|..| ..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 689999999 999999995 54432 2357999999999999999 689999999999986
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=1.3e-08 Score=83.67 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=66.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+..|||+|+.+.+||++|.+.|+.||+|+.|.|.-+..+ ++||.|+|+....|+.| -.|||..|.|+.|.|.-+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 357999999999999999999999999999999866443 47999999999999999 699999999999999854
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=7.2e-08 Score=86.77 Aligned_cols=76 Identities=29% Similarity=0.417 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
++.+|||=||+|++.|.-|-.+|+.||-|.+|++++|-. +++|+||+..+.++|-.| ..|||..|+++.+.|..-.
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 357899999999999999999999999999999999843 567999999999999999 7999999999999998543
No 48
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.71 E-value=2.7e-08 Score=96.57 Aligned_cols=80 Identities=19% Similarity=0.204 Sum_probs=71.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR 77 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~ 77 (242)
...+.||||++||++++.++|.+|||.+|+|.++-+..++++ .+|+||+|.-.++++.| -.+++..+.|+.|+|.+
T Consensus 2 n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~ 81 (678)
T KOG0127|consen 2 NKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDP 81 (678)
T ss_pred CCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccc
Confidence 344589999999999999999999999999999999987654 47999999999999999 58899999999999998
Q ss_pred cCCC
Q 026156 78 WGEY 81 (242)
Q Consensus 78 a~~~ 81 (242)
+...
T Consensus 82 A~~R 85 (678)
T KOG0127|consen 82 AKKR 85 (678)
T ss_pred cccc
Confidence 7543
No 49
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.71 E-value=2e-08 Score=91.24 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=65.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
.+||+|||.++++.+||.+|..||+|.+|+|+. .++||+.++..+++.|+ .|+|.+|.|..|+|....+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-----ccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 799999999999999999999999999999994 59999999999999995 69999999999999977654
No 50
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=4.4e-08 Score=93.16 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCee-cCeeEEEEe
Q 026156 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATI-VDQPVCIIR 77 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l-~g~~I~V~~ 77 (242)
+.++-|||+.||.++.|++|.-+|...|+|-+++|+.|+. ..+||||+|.+.+.|+.| ..||+++| -|+.|.|+.
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 3457899999999999999999999999999999998733 457999999999999999 69999998 478777764
Q ss_pred c
Q 026156 78 W 78 (242)
Q Consensus 78 a 78 (242)
.
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 3
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.70 E-value=4.3e-08 Score=94.08 Aligned_cols=78 Identities=29% Similarity=0.451 Sum_probs=69.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC-CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG-ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~-~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~ 82 (242)
+..-|.+.+|||++|++||++||+.|+ |+++.+.+.+ ..++-|||+|+++++++.|+.++...++.+.|.|-.+...+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e 87 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAE 87 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCcc
Confidence 346799999999999999999999998 9999999874 45689999999999999999999999999999998775443
No 52
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.6e-08 Score=89.05 Aligned_cols=80 Identities=23% Similarity=0.212 Sum_probs=71.5
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
|....+|+||++|...++|+-|..-|-.||+|..|.+..|-+ ..+|+||+|+..++|..| -.+|+.+|.|+.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 555678999999999999999999999999999999997643 246999999999999999 5999999999999998
Q ss_pred ecCC
Q 026156 77 RWGE 80 (242)
Q Consensus 77 ~a~~ 80 (242)
.+.+
T Consensus 86 ~AkP 89 (298)
T KOG0111|consen 86 LAKP 89 (298)
T ss_pred ecCC
Confidence 7754
No 53
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=4.8e-08 Score=94.91 Aligned_cols=73 Identities=25% Similarity=0.361 Sum_probs=66.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
..++|.|||+.|.+.+|+.+||.||.|..|.|++..+ ..+||||.|.+..+|..| ..+||..|+|++|-|.-+
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 4689999999999999999999999999999996544 237999999999999999 589999999999999733
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=2e-08 Score=93.86 Aligned_cols=75 Identities=17% Similarity=0.160 Sum_probs=67.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
|.|||+.|++...|+.||.-|-.||+|++|.+..|.- .++||||+|+=|+++.-| ..+||..++|+.|+|.+..+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 5899999999999999999999999999999987743 357999999999999999 59999999999999985433
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.63 E-value=5.1e-08 Score=94.50 Aligned_cols=80 Identities=23% Similarity=0.268 Sum_probs=72.1
Q ss_pred EEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCCCC
Q 026156 8 AEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEYTD 83 (242)
Q Consensus 8 V~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~~~ 83 (242)
+||+||.++++|++|+..|..||+|+.|.+..+.+ +++|+||+|.+.+.+.+| ..|||-+|-|+.|.|....+..+
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 89999999999999999999999999999998743 568999999999999999 79999999999999998877666
Q ss_pred CCCC
Q 026156 84 EPNP 87 (242)
Q Consensus 84 ~~~~ 87 (242)
....
T Consensus 361 ~~~a 364 (549)
T KOG0147|consen 361 TKEA 364 (549)
T ss_pred cccc
Confidence 5443
No 56
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.59 E-value=1.4e-07 Score=82.94 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCCHHHHHH----HhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 7 VAEVVGLSPNATEKDIHE----FFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLre----fFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
|+||.||+..+..++|++ +||.||+|.+|...+.....+-|||.|.+.++|..| -.|+|-.+.|++++|..+...
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999999 999999999999987655568999999999999999 699999999999999987654
Q ss_pred CC
Q 026156 82 TD 83 (242)
Q Consensus 82 ~~ 83 (242)
.+
T Consensus 91 sd 92 (221)
T KOG4206|consen 91 SD 92 (221)
T ss_pred cc
Confidence 43
No 57
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=1e-07 Score=85.95 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=68.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
.-|||+.|++.++-++||+-|..||+|.+.++++|.. +++|+||.|.+.++|+.| ..|||.=|++|.|+-.=+...
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3599999999999999999999999999999999854 347999999999999999 799999999999997644443
Q ss_pred C
Q 026156 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
+
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 3
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.8e-07 Score=84.31 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=69.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
+.+.|.=||.+.|+++||.+|+..|+|++|+|++|+- +-+|+||.|-++++|++| -.|||-.|..+.|+|..+.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 4688889999999999999999999999999999853 347999999999999999 699999999999999977654
Q ss_pred C
Q 026156 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 122 s 122 (360)
T KOG0145|consen 122 S 122 (360)
T ss_pred h
Confidence 3
No 59
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.56 E-value=9.2e-08 Score=89.86 Aligned_cols=79 Identities=22% Similarity=0.381 Sum_probs=71.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~ 79 (242)
..|+|.||+|++|.++++.+|.+.|+|..+.|....+ ...+|||.|.|++.+..|.+|.++.+.|+.|.|-|+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 5899999999999999999999999999999986422 2369999999999999999999999999999999998
Q ss_pred CCCCC
Q 026156 80 EYTDE 84 (242)
Q Consensus 80 ~~~~~ 84 (242)
+.+.|
T Consensus 88 ~~~~p 92 (479)
T KOG4676|consen 88 DEVIP 92 (479)
T ss_pred CCCCc
Confidence 76654
No 60
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1.1e-07 Score=90.36 Aligned_cols=76 Identities=28% Similarity=0.316 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCe-ecC--eeEEEEe
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGAT-IVD--QPVCIIR 77 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~-l~g--~~I~V~~ 77 (242)
.++.+||+-|+-.+||.+||++|+.||.|++|.|+++.. +.++|||+|...+-|..| ..|||.. +.| .+|.|.-
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 367899999999999999999999999999999999754 457999999999999999 6899964 554 5677765
Q ss_pred cC
Q 026156 78 WG 79 (242)
Q Consensus 78 a~ 79 (242)
+.
T Consensus 203 AD 204 (510)
T KOG0144|consen 203 AD 204 (510)
T ss_pred cc
Confidence 43
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.47 E-value=4.3e-07 Score=86.59 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=68.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh-ccCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFF-SHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefF-s~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
..+.|||+|||+++...+|+++| ...|+|++|+|+.|.+ ..++|.|+|++++.+++| ..||...+.|++|.|....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 34679999999999999999999 4889999999997743 347999999999999999 6999999999999998654
Q ss_pred C
Q 026156 80 E 80 (242)
Q Consensus 80 ~ 80 (242)
+
T Consensus 123 d 123 (608)
T KOG4212|consen 123 D 123 (608)
T ss_pred c
Confidence 4
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.44 E-value=2.5e-07 Score=84.28 Aligned_cols=70 Identities=19% Similarity=0.260 Sum_probs=65.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
.+++|+||+|.++.++||.-|..+|.+.+++|.+ .++||+|...+++..| ..|||+++.|++++|.....
T Consensus 79 tkl~vgNis~tctn~ElRa~fe~ygpviecdivk-----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 79 TKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred cccccCCCCccccCHHHhhhhcccCCceeeeeec-----ceeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 5799999999999999999999999999999985 5999999999999999 69999999999999986543
No 63
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.44 E-value=3.4e-07 Score=81.38 Aligned_cols=77 Identities=23% Similarity=0.200 Sum_probs=69.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
+...|||+|+.+.+|-+++...|.-||.|..|.+..+.. ..+|+||.|.+...++.++.|||..|.|+.|.|+....
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeeeee
Confidence 457899999999999999999999999999999987643 35699999999999999999999999999999987643
No 64
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.44 E-value=4.2e-07 Score=87.02 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=65.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--Cc-CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--EC-GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~-~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
.+|||.|||+++++.+|+++|..||.|+...|.... +. .+|+||+|++..+++.|++-+--.|+++.+.|..-..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 469999999999999999999999999999888532 22 2899999999999999999998889999999985543
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.39 E-value=8.1e-07 Score=82.43 Aligned_cols=73 Identities=22% Similarity=0.315 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVC 74 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~ 74 (242)
..|||+|||+.+|-+++.++|+.||-|.. |+|.++.. .++-|.++|-..++++-| .+|++..|.|+.|+
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 35999999999999999999999998853 67776643 347899999999999999 69999999999999
Q ss_pred EEec
Q 026156 75 IIRW 78 (242)
Q Consensus 75 V~~a 78 (242)
|..+
T Consensus 215 VerA 218 (382)
T KOG1548|consen 215 VERA 218 (382)
T ss_pred Eehh
Confidence 9977
No 66
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=3.9e-07 Score=84.25 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=70.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~ 80 (242)
+.+++||++|++.++++.|+++|+.+|+|.++.++++..+ .+|+||+|.+++.+..++...-+.|+|+.|.+.++-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 3478999999999999999999999999999999987543 4699999999999999988888999999999988754
Q ss_pred CC
Q 026156 81 YT 82 (242)
Q Consensus 81 ~~ 82 (242)
..
T Consensus 85 r~ 86 (311)
T KOG4205|consen 85 RE 86 (311)
T ss_pred cc
Confidence 43
No 67
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.36 E-value=6.1e-07 Score=82.97 Aligned_cols=78 Identities=23% Similarity=0.291 Sum_probs=71.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEYT 82 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~~ 82 (242)
..|||++||+.++|++++++|.++|.|..+.++.|.++ .+|+||+|.++++++.++...-+.|.++.|.|..+.+-.
T Consensus 98 kkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 98 KKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred eEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccchh
Confidence 48999999999999999999999999999999987653 369999999999999999999999999999999886654
Q ss_pred C
Q 026156 83 D 83 (242)
Q Consensus 83 ~ 83 (242)
.
T Consensus 178 ~ 178 (311)
T KOG4205|consen 178 V 178 (311)
T ss_pred h
Confidence 3
No 68
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=1.3e-06 Score=82.64 Aligned_cols=69 Identities=25% Similarity=0.325 Sum_probs=63.3
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
.+||+ |.+||..|.++|+..|++.+|++.++-.+-++|||.|.++..|+.| -.||...|.|++|+|-..
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s 72 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWS 72 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehh
Confidence 68899 9999999999999999999999998873337999999999999999 599999999999999754
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.35 E-value=1.1e-06 Score=87.61 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=66.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+++||+||++.+|.++|.+.|+..|.|.++.|...+. +.||+||+|.+++.|+.| ..|+|+.|+|+.|.|..+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 3499999999999999999999999999999875432 238999999999999999 588999999999999987
Q ss_pred C
Q 026156 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 6
No 70
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.34 E-value=8.5e-07 Score=84.61 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=65.3
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEe
Q 026156 2 YAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIR 77 (242)
Q Consensus 2 ~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~ 77 (242)
.+..++|+|.|||.++|.+-||+-|..||.+.+.+|+..+.. .+.|.|.+++.|+.| -+|||..|+|+.|.|+.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks--kGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS--KGVVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc--cceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 445689999999999999999999999999999999644332 459999999999999 69999999999999974
No 71
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.22 E-value=1.5e-06 Score=74.52 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=64.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEE-EEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHV-EIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V-~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
..+||+||.|.+.|+-|.+.||+||.|.+- ++++++. ..+++||.|.+.++...| -.+||..+..++|+|..+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 579999999999999999999999998774 6666543 346999999999999999 588999999999999865
No 72
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.22 E-value=2.5e-06 Score=81.24 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=62.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH--hcCCCeecC--eeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV--LLSGATIVD--QPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl--~Lng~~l~g--~~I~V~~a 78 (242)
-.+||+-||-.++|+|||++|..||.|.+|.|++|+. +.++|||+|...+++..|+ +-|-.+|-| .+|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 4689999999999999999999999999999999854 4579999999999999993 446667755 56777765
Q ss_pred C
Q 026156 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 115 d 115 (510)
T KOG0144|consen 115 D 115 (510)
T ss_pred c
Confidence 3
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.21 E-value=3e-06 Score=79.47 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=69.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
..|||..+.|+.+|+||+..|.-||+|.+|.|.+... .++|+||+|.+.++-..| -.+|--.|+|+.++|..+-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999998743 457999999999999999 588989999999999877655
Q ss_pred CC
Q 026156 82 TD 83 (242)
Q Consensus 82 ~~ 83 (242)
|+
T Consensus 291 P~ 292 (544)
T KOG0124|consen 291 PD 292 (544)
T ss_pred Cc
Confidence 54
No 74
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.1e-06 Score=77.76 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=70.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+++|.+||=.||.+..+.+|...|-.||.|.+-++..|+ .+++|+||.|.++.+++.| ..+||-.|+-++++|..-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 577999999999999999999999999999999999774 3567999999999999999 699999999999999854
Q ss_pred C
Q 026156 79 G 79 (242)
Q Consensus 79 ~ 79 (242)
.
T Consensus 363 R 363 (371)
T KOG0146|consen 363 R 363 (371)
T ss_pred C
Confidence 3
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.18 E-value=5.9e-06 Score=74.04 Aligned_cols=78 Identities=23% Similarity=0.293 Sum_probs=68.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~~ 81 (242)
..+|+|+||++.++++||+++|..||.++.+-+..+ +.+.++|-|.|...++|..| ..|||..|+|.++.+....+.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 368999999999999999999999999999888755 34558999999999999999 699999999999999866543
Q ss_pred C
Q 026156 82 T 82 (242)
Q Consensus 82 ~ 82 (242)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.16 E-value=2.1e-06 Score=75.60 Aligned_cols=69 Identities=19% Similarity=0.291 Sum_probs=62.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
..|||++|++.+.+++|.+||..+|+|.++.|. .+|+||+|+++.+|+.| --|||..|.+..+.|..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 369999999999999999999999999999997 46899999999999999 6999999999987776554
No 77
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.16 E-value=3.9e-06 Score=84.46 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=64.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
.+|+||++|+.+++|.||+..|..||.|.+|.++.. .++|||+....++|++| ..|++..+.++.|+|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~ 490 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIA 490 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEe
Confidence 379999999999999999999999999999999854 36899999999999999 6999999999999997
No 78
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.15 E-value=8.5e-07 Score=78.14 Aligned_cols=77 Identities=19% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC-cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE-CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~-~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
.++||+|.|+...++|+-|.|+|-..|+|..|.|..... ..+||||.|+++-++.-| .++||..|.++.+.|++-+.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 358999999999999999999999999999999986543 335999999999999999 79999999999999986543
No 79
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.11 E-value=5.8e-06 Score=81.17 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
...+.++|++|+..+.-.||+.+||+||+|.-.+++.+ ++..+|+|||+.....|.++ ..|+.++|-|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34578999999999999999999999999999988854 44557999999999999999 699999999999999988
Q ss_pred CCCC
Q 026156 79 GEYT 82 (242)
Q Consensus 79 ~~~~ 82 (242)
.+-+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 6655
No 80
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.98 E-value=1.6e-05 Score=69.34 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=63.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC-CCceEEEEeecC---CcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHC-GDPVHVEIIRSG---ECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~-G~I~~V~l~~~~---~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
.-++|..++...-|.++..+|..+ |.+..+++-|+. .+.+||||+|++++-|+-| -.||+..|.++-+.+.--
T Consensus 50 g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 50 GVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred cceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 468999999999999999998777 889999997653 3457999999999999998 899999999999888744
No 81
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.91 E-value=4.7e-06 Score=81.14 Aligned_cols=73 Identities=29% Similarity=0.433 Sum_probs=66.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
+|||+--|+-.+++.+|.+||+.+|+|..|.|+.+.. ..+.+||+|.|.+.+..|+.|+|..+.|.+|.|.+.
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 6788888999999999999999999999999998743 357999999999999999999999999999999854
No 82
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.86 E-value=4.2e-05 Score=60.13 Aligned_cols=52 Identities=29% Similarity=0.463 Sum_probs=35.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA 60 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA 60 (242)
+.|+|.|++..++-++|++.|+.+|+|.+|.+.+. ...|||-|.++++|+.|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a 53 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKA 53 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHH
Confidence 57999999999999999999999999999999853 24899999999999988
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.85 E-value=1e-05 Score=78.91 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=61.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVC 74 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~ 74 (242)
.++|.|-||++.+++++|++.|+.||+|..|+..+.. .+..||+|-|-..|+.| ..||+..|.|+.|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~--~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK--RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc--CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3699999999999999999999999999997766443 36899999999999999 69999999999988
No 84
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.83 E-value=1.5e-05 Score=79.54 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=64.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+.|.|.|||..++-++|+++|+.||.|.+|+|+...+ ..+||||+|-.++.+..| -.|.++-|.|+++.+.-+
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA 690 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWA 690 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehh
Confidence 5799999999999999999999999999999996522 247999999999999999 577799999999988743
No 85
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=4.7e-05 Score=52.77 Aligned_cols=52 Identities=23% Similarity=0.407 Sum_probs=43.2
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl 61 (242)
+.|-|++.++...+ +++++|..||+|.++.+. ....+.||.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 58999999988765 455588899999999886 22469999999999999984
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.71 E-value=8.2e-05 Score=71.90 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=61.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecCC--cCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSGE--CGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~~--~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
...|.+.+||+.||++||.+||+-.=.+.. |.++.+.. ..+-|||.|+.++.++.||.-+...|+.+-|.|-++
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 468999999999999999999997754444 33444322 457999999999999999999999999999999754
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.68 E-value=0.00022 Score=63.34 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=63.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec-CC---cCceEEEEecCHHHHHHH-HhcCCCeec---CeeEEEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS-GE---CGGTAYVTFSNAYALETA-VLLSGATIV---DQPVCII 76 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~-~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~---g~~I~V~ 76 (242)
.+|+||++||.++-.++|..+|..|---+...|... ++ ++.+||++|.+.+.|..| -.|||..++ ++.++|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 689999999999999999999988866676666533 22 236999999999999999 699999986 6778888
Q ss_pred ecCCC
Q 026156 77 RWGEY 81 (242)
Q Consensus 77 ~a~~~ 81 (242)
.+...
T Consensus 114 lAKSN 118 (284)
T KOG1457|consen 114 LAKSN 118 (284)
T ss_pred ehhcC
Confidence 66443
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.66 E-value=0.00017 Score=72.38 Aligned_cols=72 Identities=22% Similarity=0.238 Sum_probs=63.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec---CCc---CceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS---GEC---GGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~---~~~---~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
.+.+||+||+|.++|+.|-.-|+.||+|.+|+|+-- .++ ..++||-|-+..+++.| ..|+|..+.+..+++.
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 468999999999999999999999999999999832 121 24899999999999999 5999999999888886
No 89
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.60 E-value=0.00034 Score=54.76 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEE-Eeec---------CCcCceEEEEecCHHHHHHHHhcCCCeecCeeEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVE-IIRS---------GECGGTAYVTFSNAYALETAVLLSGATIVDQPVC 74 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~-l~~~---------~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~ 74 (242)
.+.|.|=+.|+. .-..|-+.|+.||.|.+.. +.++ .....+-.|+|.++.+|.+||..||..|.|..+-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 467999999998 5667778899999998775 1111 1123599999999999999999999999987665
Q ss_pred EEec
Q 026156 75 IIRW 78 (242)
Q Consensus 75 V~~a 78 (242)
..++
T Consensus 85 GV~~ 88 (100)
T PF05172_consen 85 GVKP 88 (100)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 90
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.52 E-value=7.4e-05 Score=69.70 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=65.5
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceE--------EEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVH--------VEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~--------V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
...+|||-+|+..+++++|-+||..||.|.. |.|-.+.+ .++-|.|+|.|+.+++.| ..+++..+.++
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4468999999999999999999999999843 44444433 346999999999999999 79999999999
Q ss_pred eEEEEecCCC
Q 026156 72 PVCIIRWGEY 81 (242)
Q Consensus 72 ~I~V~~a~~~ 81 (242)
.|+|..+..-
T Consensus 145 ~ikvs~a~~r 154 (351)
T KOG1995|consen 145 TIKVSLAERR 154 (351)
T ss_pred Cchhhhhhhc
Confidence 9999877543
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.50 E-value=9.9e-05 Score=65.53 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=53.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI 68 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l 68 (242)
.|+||.||+++|+|++|+..|+.|--...++|...++ ...||++|++.+-|..| ..|.|-.|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4799999999999999999999887777777765443 47999999999999999 68888776
No 92
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00013 Score=66.24 Aligned_cols=63 Identities=24% Similarity=0.342 Sum_probs=55.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC--CcCceEEEEecCHHHHHHH-HhcCCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG--ECGGTAYVTFSNAYALETA-VLLSGA 66 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~--~~~~~AfV~F~~~~aA~tA-l~Lng~ 66 (242)
+++++||+=|...-+|+|+|.+|..||.|++|.+.+.. ..+++|||.|.+.-++..| ..|+|.
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 45789999999999999999999999999999999753 3568999999999999999 466664
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.38 E-value=0.00092 Score=51.03 Aligned_cols=66 Identities=24% Similarity=0.368 Sum_probs=46.5
Q ss_pred cEEEEeCCCCCCCHHHHH----HHhccCC-CceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIH----EFFSHCG-DPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLr----efFs~~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
..++|.|||.+..-..|+ .++..|| +|.+|. ++.|.|.|.+++.|..| ..|+|...-|+.|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 579999999999887765 5666896 555552 46899999999999999 799999999999999865
No 94
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.07 E-value=0.00029 Score=63.45 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=57.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc--------C-------ceEEEEecCHHHHHHH-HhcCCCeec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC--------G-------GTAYVTFSNAYALETA-VLLSGATIV 69 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~--------~-------~~AfV~F~~~~aA~tA-l~Lng~~l~ 69 (242)
..||++||||......||++|+.||.|-.|-|..+... + .-++|+|.+...|... .+|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 47999999999999999999999999999999875332 1 1589999999999887 899999999
Q ss_pred Ce
Q 026156 70 DQ 71 (242)
Q Consensus 70 g~ 71 (242)
|+
T Consensus 155 gk 156 (278)
T KOG3152|consen 155 GK 156 (278)
T ss_pred CC
Confidence 86
No 95
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.04 E-value=0.0029 Score=60.48 Aligned_cols=72 Identities=19% Similarity=0.242 Sum_probs=64.9
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
...|-|+||.+ .+|.+-|-.+|+-||+|.+|+|+..+. --|.|.+.|..-|+-| -.|+|..|-|+.|+|+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk--d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK--DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC--cceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 46899999966 589999999999999999999997653 4799999999999999 699999999999999865
No 96
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.02 E-value=0.0031 Score=52.53 Aligned_cols=74 Identities=20% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCCCCcEEEEeCCCCC-----CCHH----HHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCe
Q 026156 1 MYAGGYVAEVVGLSPN-----ATEK----DIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQ 71 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~-----~TE~----dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~ 71 (242)
|-|-..||.|+=++|. .-++ +|-+.|..||.+.-|++..+ .-+|+|.+-+.|-.|+.++|.+++|+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals~dg~~v~g~ 97 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALSLDGIQVNGR 97 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHHGCCSEETTE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHccCCcEECCE
Confidence 4455678888877722 2222 67778999999888887743 56999999999999999999999999
Q ss_pred eEEEEecC
Q 026156 72 PVCIIRWG 79 (242)
Q Consensus 72 ~I~V~~a~ 79 (242)
.|+|..-.
T Consensus 98 ~l~i~LKt 105 (146)
T PF08952_consen 98 TLKIRLKT 105 (146)
T ss_dssp EEEEEE--
T ss_pred EEEEEeCC
Confidence 99998653
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.96 E-value=0.00064 Score=60.05 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
+.+.+.|.|++..+...+|.++|+++|++.+..+. ..+++|.|..+.++..| -.|+|..|.++.|.+.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~-----~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDAR-----RNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhh-----ccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 45789999999999999999999999999766652 36899999999999999 6999999999999993
No 98
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.95 E-value=0.00069 Score=62.11 Aligned_cols=76 Identities=24% Similarity=0.219 Sum_probs=63.7
Q ss_pred cEEE-EeCCCCCCCHHHHHHHhccCCCceEEEEeecCCc---CceEEEEecCHHHHHHHHhcCCCeecCeeEEEEecCCC
Q 026156 6 YVAE-VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGEC---GGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~-VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~---~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a~~~ 81 (242)
.+++ |+||+..+++++|+++|..||.|..+++..+.+. .+++||.|........++..+...+.++++.+....+.
T Consensus 185 ~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 185 DTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCC
Confidence 4566 9999999999999999999999999999876543 46999999999888888655678888988888755433
No 99
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=96.88 E-value=0.0045 Score=54.76 Aligned_cols=76 Identities=16% Similarity=0.219 Sum_probs=64.0
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEEEEec
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVCIIRW 78 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~V~~a 78 (242)
|.+-..++++.|||..++.+.+...|..|.--..|+++.. .+..|||+|.+...+..| ..|.|..|- ...+.|+.+
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~--~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP--RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC--CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 4566689999999999999999999999998999999853 246999999999998888 688888776 677777643
No 100
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0021 Score=60.15 Aligned_cols=70 Identities=16% Similarity=0.376 Sum_probs=57.9
Q ss_pred EEEEeCCCCCCCHHH------HHHHhccCCCceEEEEeecC---C-cCc--eEEEEecCHHHHHHH-HhcCCCeecCeeE
Q 026156 7 VAEVVGLSPNATEKD------IHEFFSHCGDPVHVEIIRSG---E-CGG--TAYVTFSNAYALETA-VLLSGATIVDQPV 73 (242)
Q Consensus 7 tV~VsNLs~~~TE~d------LrefFs~~G~I~~V~l~~~~---~-~~~--~AfV~F~~~~aA~tA-l~Lng~~l~g~~I 73 (242)
-|||-+|+|.+-.++ -.+||++||+|..|-+-+.. + ... -.||+|...++|.++ ...+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999999987777 24899999999999887542 1 112 349999999999999 6899999999999
Q ss_pred EEE
Q 026156 74 CII 76 (242)
Q Consensus 74 ~V~ 76 (242)
+.+
T Consensus 196 kat 198 (480)
T COG5175 196 KAT 198 (480)
T ss_pred eee
Confidence 986
No 101
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.81 E-value=0.012 Score=45.92 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=53.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhc--cCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFS--HCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIV 69 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs--~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~ 69 (242)
+||-|.|||...|.++|.+.+. +.|..--+-|+-|-. ..|+|||.|.+++.+..- ..++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 5899999999999999998874 457777777776633 247999999999999988 788988774
No 102
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.59 E-value=0.0085 Score=60.58 Aligned_cols=74 Identities=24% Similarity=0.315 Sum_probs=62.1
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 3 AGGYVAEVVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G~I-~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
++.+.|-+.|+|..++-+||-+||+.|-.+ -+|.+.+.++ ..+-|-|-|++++.|..| .-|++..|..+.|.+.
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 344688999999999999999999999766 4555554332 457999999999999999 8999999999998875
No 103
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.45 E-value=0.0034 Score=61.58 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=69.9
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
...++|+||+...++.+++|...-||.+...++..+.. .++|||.+|.++.-...| -.|||..+++..+.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 36799999999999999999999999999999997644 457999999999999999 69999999999999998754
Q ss_pred CCC
Q 026156 81 YTD 83 (242)
Q Consensus 81 ~~~ 83 (242)
-..
T Consensus 369 g~~ 371 (500)
T KOG0120|consen 369 GAS 371 (500)
T ss_pred cch
Confidence 333
No 104
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=96.18 E-value=0.0065 Score=54.93 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=63.0
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
.+..||++.|..+++++.|-.-|..|=....-+++++.. +.+|+||.|.++.++..| ..+||..++.++|...
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 357899999999999999999999887777777777643 457999999999999999 6999999999888775
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.11 E-value=0.016 Score=56.66 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=43.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC------cCc---eEEEEecCHHHHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE------CGG---TAYVTFSNAYALETA 60 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~------~~~---~AfV~F~~~~aA~tA 60 (242)
+.|||++||+.++|+.|..+|..||.+ .|+.....+ ..+ |+|+.|+++..+..-
T Consensus 260 ~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~L 322 (520)
T KOG0129|consen 260 RKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSL 322 (520)
T ss_pred cceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHH
Confidence 579999999999999999999999985 455553211 234 999999999888764
No 106
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.96 E-value=0.0059 Score=55.38 Aligned_cols=41 Identities=22% Similarity=0.300 Sum_probs=28.7
Q ss_pred hcCCcHHHHHHHHhhhhccccchhhhhHHHHHHHhhhhhchhHH
Q 026156 147 SYGLSASAAAKVAELSNRIGLTDKINASMEAIKSVDEKYHVSDV 190 (242)
Q Consensus 147 kh~~ss~~~~~v~~~d~k~g~t~k~~~g~~~~~~vD~k~~vs~~ 190 (242)
=+-|+..+..+...||+|+|||.++ ..++.++|+|||+|||
T Consensus 117 Gy~l~~dA~~kAk~fDekH~~ss~a---~a~v~~~d~k~gltek 157 (260)
T PLN03120 117 GFILGKDAVNKAKAFDEKHQLTSTA---SAKVASLDKKIGLSEK 157 (260)
T ss_pred hhhhhHHHHHHHHHHHHhhchHHHH---HHHHHhhhhhcCcccc
Confidence 3446667777777777777777664 3457777777777776
No 107
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=95.93 E-value=0.0054 Score=58.85 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=51.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC---C-----c--------CceEEEEecCHHHHHHHHhcCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG---E-----C--------GGTAYVTFSNAYALETAVLLSG 65 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~---~-----~--------~~~AfV~F~~~~aA~tAl~Lng 65 (242)
.+||.+.|||.+-.-+.|.++|+.||.|+.|+|+.-+ + . .-.|+|+|+..++|.+|..|++
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 3799999999999999999999999999999998541 1 1 1279999999999999955443
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=95.65 E-value=0.041 Score=51.67 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=61.9
Q ss_pred CCcEEEEeCCC-C---CCC-------HHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCe
Q 026156 4 GGYVAEVVGLS-P---NAT-------EKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQ 71 (242)
Q Consensus 4 ~~~tV~VsNLs-~---~~T-------E~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~ 71 (242)
..+||.++||= | ..+ +++|++=-+.||.|.+|.+.. ..+.+.+.|.|.+++.|..+ ..|+|.-++||
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d-~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR 342 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD-RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGR 342 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec-cCCCceeEEEeCChHHHHHHHHHhcCeeecce
Confidence 35799999983 2 334 345556688999999998873 33457999999999999999 79999999999
Q ss_pred eEEEEecCCC
Q 026156 72 PVCIIRWGEY 81 (242)
Q Consensus 72 ~I~V~~a~~~ 81 (242)
.|....|...
T Consensus 343 ql~A~i~DG~ 352 (382)
T KOG1548|consen 343 QLTASIWDGK 352 (382)
T ss_pred EEEEEEeCCc
Confidence 9999988643
No 109
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=95.52 E-value=0.035 Score=53.22 Aligned_cols=73 Identities=12% Similarity=0.113 Sum_probs=57.8
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCe-eEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQ-PVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~-~I~V~~a 78 (242)
..|++.+|||++++|++|++.|..-|-..+--...-+ ..+.|++.+.+.+.|-.| ..+.++.+++. .++|+..
T Consensus 414 satlHlsnip~svsee~lk~~f~~~g~~vkafkff~k-d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFS 488 (492)
T KOG1190|consen 414 SATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK-DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFS 488 (492)
T ss_pred hhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-CcceeecccCChhHhhhhccccccccCCCCceEEEEee
Confidence 3589999999999999999999887765444333222 246999999999999999 68899999876 6787643
No 110
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.031 Score=54.74 Aligned_cols=73 Identities=26% Similarity=0.213 Sum_probs=60.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhc-cCCCceEEEEeecCC---cCceEEEEecCHHHHHHHH-----hcCCCeecCeeEEEE
Q 026156 6 YVAEVVGLSPNATEKDIHEFFS-HCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAV-----LLSGATIVDQPVCII 76 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs-~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl-----~Lng~~l~g~~I~V~ 76 (242)
+||||++||--++-++|-.+|. -||.|.++-|=.|.+ ..+-+-|+|.+.++..+|+ .|+...|. ++|.|.
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~-KRVEIk 449 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID-KRVEIK 449 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc-eeeeec
Confidence 7999999999999999999998 899999999987755 3478999999999888873 55655554 478888
Q ss_pred ecC
Q 026156 77 RWG 79 (242)
Q Consensus 77 ~a~ 79 (242)
|+-
T Consensus 450 PYv 452 (520)
T KOG0129|consen 450 PYV 452 (520)
T ss_pred cee
Confidence 764
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.41 E-value=0.011 Score=56.17 Aligned_cols=70 Identities=26% Similarity=0.390 Sum_probs=57.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhc-cC---CCceEEEEee--cCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEE
Q 026156 7 VAEVVGLSPNATEKDIHEFFS-HC---GDPVHVEIIR--SGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCII 76 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs-~~---G~I~~V~l~~--~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~ 76 (242)
.|...+||+++++.|+.+||. .| |..+.|..+. |+...+-|||.|..++.|+.||.-+...|+-+.|.+-
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 477789999999999999996 22 3456666664 3344689999999999999999999999998888774
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.28 E-value=0.0017 Score=66.43 Aligned_cols=67 Identities=28% Similarity=0.353 Sum_probs=55.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEe---ecCCcCceEEEEecCHHHHHHHHhcCCCeecCee
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEII---RSGECGGTAYVTFSNAYALETAVLLSGATIVDQP 72 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~---~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~ 72 (242)
.++||+||++.+.+.+|+++|+++|.|..+.+. ..+...+.||+.|.++..+..|+.++...+-|+.
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~ 737 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI 737 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh
Confidence 478999999999999999999999999888776 1233357999999999999999877666655543
No 113
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.70 E-value=0.091 Score=51.78 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=48.2
Q ss_pred HHHHHhccCCCceEEEEeec-CC-----cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 21 DIHEFFSHCGDPVHVEIIRS-GE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 21 dLrefFs~~G~I~~V~l~~~-~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+++.=++.||.|.+|++.++ .+ ..+..||+|.+.++++.| ..|+|..+.|+.|....+
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 34445789999999999976 22 136899999999999999 799999999998887754
No 114
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.48 E-value=0.1 Score=48.30 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=49.6
Q ss_pred HHHHHHHhccCCCceEEEEeecCC----cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 19 EKDIHEFFSHCGDPVHVEIIRSGE----CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 19 E~dLrefFs~~G~I~~V~l~~~~~----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
|.++++-..+||+|..|.|..... ..---||+|+..+.+-+| +.|||..++|+.+..+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 456777789999999999886532 123689999999999999 799999999999887754
No 115
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.32 E-value=0.18 Score=46.85 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=57.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCee-EEEEecCCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQP-VCIIRWGEY 81 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~-I~V~~a~~~ 81 (242)
+.-|.|=+.+|.-. .-|-..|+.||.|.+....+ ...+-+|.|.+...+++||..||..|+|.. |-|.+|.+.
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~---ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS---NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC---CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCH
Confidence 34677888888644 45667899999998877653 245999999999999999999999998765 677777553
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=94.09 E-value=0.031 Score=56.73 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=65.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceE-EEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecCC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVH-VEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWGE 80 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~-V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~~ 80 (242)
+..|||..||..+++.++-+||+..-.|++ |.|.+... ....|||.|.++.+..+| +.-+-..++.+.|+|.+..+
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 357999999999999999999999888888 77775532 236899999999999999 56677778899999987665
Q ss_pred CCC
Q 026156 81 YTD 83 (242)
Q Consensus 81 ~~~ 83 (242)
+..
T Consensus 514 ~~m 516 (944)
T KOG4307|consen 514 YAM 516 (944)
T ss_pred HHH
Confidence 543
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=94.02 E-value=0.058 Score=51.49 Aligned_cols=73 Identities=21% Similarity=0.273 Sum_probs=58.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC-CceE--EEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCG-DPVH--VEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G-~I~~--V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
.+|.+.+||+.++.+||-+||..|. .|.. |.+.-+ +..++-|||.|.+.+.+..| ..-..+....+.|.|-++
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 4799999999999999999998765 3433 555543 44578999999999999998 566666667899999765
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=93.65 E-value=0.016 Score=60.01 Aligned_cols=72 Identities=22% Similarity=0.168 Sum_probs=61.1
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEE
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCII 76 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~ 76 (242)
.+|+|++||.+.+++.+|+..|..+|+|.+|.|..- +....++||.|.+-.++..| ..+.+..|+...+.+.
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 479999999999999999999999999999999854 22346999999999999999 7888888865555543
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=93.59 E-value=0.36 Score=46.16 Aligned_cols=73 Identities=25% Similarity=0.372 Sum_probs=62.6
Q ss_pred CcEEEEeCCCC-CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEecC
Q 026156 5 GYVAEVVGLSP-NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRWG 79 (242)
Q Consensus 5 ~~tV~VsNLs~-~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a~ 79 (242)
++.+-|-+|.. ...-+.|-.+|..||.|+.|+.++.. .+.|.|+.-|+.+++.| ..||+..+-|..|.|....
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 35678888865 46778889999999999999999754 36999999999999999 6999999999999998653
No 120
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.30 E-value=0.43 Score=34.28 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=42.6
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccC---CCceEEEEeecCCcCceEEEEecCHHHHHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHC---GDPVHVEIIRSGECGGTAYVTFSNAYALETAV 61 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~---G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl 61 (242)
..|+|.|+. +.+.+||+.||..| ....+|+.+.|. .|=|.|.++..|..||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----ScNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----SCNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----cEEEEECCHHHHHHHH
Confidence 579999985 48899999999887 235789998763 6899999999999995
No 121
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=93.07 E-value=0.27 Score=42.96 Aligned_cols=61 Identities=21% Similarity=0.391 Sum_probs=53.1
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI 68 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l 68 (242)
+++.|.|++|||+.+-+||+++.-..|++-..++.++ +++.|+|...++.+-| ..|+...+
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeeehhhHHHHHHhhccccc
Confidence 3478999999999999999999999999998888876 3789999999999999 46666555
No 122
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=92.88 E-value=0.13 Score=51.11 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=55.0
Q ss_pred cEEEEeCCCCCCCHH-------HHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeec-CeeEE
Q 026156 6 YVAEVVGLSPNATEK-------DIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIV-DQPVC 74 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~-------dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~-g~~I~ 74 (242)
..|.|-|+|- +-.. -|...|+.+|+|..+.+..+ +++.++.|++|.+...|+.| ..|||..|+ .+...
T Consensus 59 ~vVvv~g~Pv-V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 59 SVVVVDGAPV-VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred eEEEECCCcc-cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 4677888764 3222 24567999999999999854 44668999999999999999 799999987 45566
Q ss_pred EEec
Q 026156 75 IIRW 78 (242)
Q Consensus 75 V~~a 78 (242)
|...
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6544
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=92.77 E-value=0.62 Score=35.60 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=45.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEEecCCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAV-LLSGATIVDQPVCIIRWGEY 81 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~~a~~~ 81 (242)
...+|+ .|..+-..||.++|+.||.| +|..+.| ..|||...+.+.+..++ .++ . +...+|..+.+|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~d----TSAfV~l~~r~~~~~v~~~~~-~---~~~y~i~tY~ey 76 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWIND----TSAFVALHNRDQAKVVMNTLK-K---NSSYRIQTYAEY 76 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECT----TEEEEEECCCHHHHHHHHHHT-T----SSSEEEEHHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcC----CcEEEEeecHHHHHHHHHHhc-c---CCceEEEEHHHH
Confidence 445666 99999999999999999985 6666654 47999999999999984 333 2 334555555443
No 124
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.68 E-value=0.11 Score=49.23 Aligned_cols=73 Identities=19% Similarity=0.302 Sum_probs=57.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCC--CceEEEEee---cCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEIIR---SGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l~~---~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
+++||+||-|.+|++||-+-....| .|.++++.. ++++++||.|...+..+.+.- -+|--.+|-|+.-.|.++
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 5799999999999999999876666 344444443 344668999999998888887 588889999988888754
No 125
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.55 E-value=0.22 Score=42.57 Aligned_cols=68 Identities=25% Similarity=0.243 Sum_probs=44.3
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhcc-CCCc---eEEEEeecCC-----cCceEEEEecCHHHHHHH-HhcCCCeecCee
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSH-CGDP---VHVEIIRSGE-----CGGTAYVTFSNAYALETA-VLLSGATIVDQP 72 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~-~G~I---~~V~l~~~~~-----~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~ 72 (242)
...|.|.+|||+.||+++.+-.+. +|.. .++.-..... ....|||.|.+.+.+..- ..++|..+.+..
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 358999999999999999887765 6665 3443222111 124899999999887776 789998876543
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=91.68 E-value=0.16 Score=46.16 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=59.9
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC--cCceEEEEecCHHHHHHHH-hcC----CCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETAV-LLS----GATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tAl-~Ln----g~~l~g~~I~V~~a 78 (242)
..|+|.||++.++-+.+++-|+.||+|..--++.|.. .++-..|.|.+.-.+..|+ ..+ +.+..++++.|.|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 4699999999999999999999999999877775532 3568999999999999884 332 23556778888766
Q ss_pred CCC
Q 026156 79 GEY 81 (242)
Q Consensus 79 ~~~ 81 (242)
.-.
T Consensus 112 eq~ 114 (275)
T KOG0115|consen 112 EQP 114 (275)
T ss_pred hcc
Confidence 443
No 127
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=91.45 E-value=0.1 Score=47.12 Aligned_cols=59 Identities=17% Similarity=0.175 Sum_probs=47.8
Q ss_pred HHHHHHhc-cCCCceEEEEeecCC--cCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 20 KDIHEFFS-HCGDPVHVEIIRSGE--CGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 20 ~dLrefFs-~~G~I~~V~l~~~~~--~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
++|-..|+ .||.|+++.+....+ ..+-+||.|..+++|+.| ..|||.-+.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444555 999999998875533 346899999999999999 699999999999988754
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.31 E-value=0.18 Score=52.16 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=61.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeec--CCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRS--GECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~--~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
..|+|+|.|+..|.++++..|+..|.+++++++.. +...+.|+|.|.++..+..+ ...++..+.-+.+.|...
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs 812 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS 812 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence 46899999999999999999999999999988754 33568999999999999998 466777776666666543
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.08 E-value=1.6 Score=34.60 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=47.1
Q ss_pred EEEEeCCCC-CCCHHHHHHHhccC-CCceEEEEeecCCcCc-eEEEEecCHHHHHHH-HhcCCCeecC
Q 026156 7 VAEVVGLSP-NATEKDIHEFFSHC-GDPVHVEIIRSGECGG-TAYVTFSNAYALETA-VLLSGATIVD 70 (242)
Q Consensus 7 tV~VsNLs~-~~TE~dLrefFs~~-G~I~~V~l~~~~~~~~-~AfV~F~~~~aA~tA-l~Lng~~l~g 70 (242)
++.|--+|| -++-++|..|.+.+ ..|.+++|++++...+ -+.+.|.++..|..= ..+||..+..
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444444444 45556677666644 5788999999876555 688999999999988 8999998754
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.56 E-value=1 Score=37.86 Aligned_cols=65 Identities=17% Similarity=0.083 Sum_probs=48.0
Q ss_pred cEEEEe----CCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEE
Q 026156 6 YVAEVV----GLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVC 74 (242)
Q Consensus 6 ~tV~Vs----NLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~ 74 (242)
.||.|. |+.|.-+-+.+....+.||+|.+|.+.. .+.|.|+|+|-.+|-.|+.--+...-|..+.
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 466664 7777777777888899999999999872 3699999999999999954333333343333
No 131
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=89.27 E-value=1.8 Score=41.57 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=55.1
Q ss_pred EeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEec
Q 026156 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRW 78 (242)
Q Consensus 10 VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a 78 (242)
|-|--+.+|-+-|..+-..+|+|..|-|.+.. .-.|.|+|++-+.|+.| -.|||+.|.. +.++|..+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkn--gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKN--GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEecc--ceeeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 34555579999999999999999999998653 34899999999999999 7999999853 56667644
No 132
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=88.55 E-value=1.7 Score=37.46 Aligned_cols=58 Identities=21% Similarity=0.274 Sum_probs=45.2
Q ss_pred CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcC--CCeecCeeEEEEec
Q 026156 18 TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLS--GATIVDQPVCIIRW 78 (242)
Q Consensus 18 TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Ln--g~~l~g~~I~V~~a 78 (242)
....|+++|..++.+..+..++. .+-..|.|.+.+.|..| ..|+ +..+.|..++|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 45889999999999999888753 46789999999999999 7888 99999999999755
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=88.32 E-value=0.67 Score=48.46 Aligned_cols=72 Identities=15% Similarity=0.148 Sum_probs=61.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecC--eeEEEEecCC
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVD--QPVCIIRWGE 80 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g--~~I~V~~a~~ 80 (242)
+.++|++|.+.+....|...|..||.|..|.+-. ...+|||.|+++..+..| -.+-|..|++ +.+.|..+.+
T Consensus 456 tr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 456 TRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred eeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 5699999999999999999999999999988852 124999999999999999 6889999976 5577765544
No 134
>PLN03121 nucleic acid binding protein; Provisional
Probab=88.10 E-value=0.53 Score=42.43 Aligned_cols=41 Identities=17% Similarity=0.223 Sum_probs=28.7
Q ss_pred cceecHHHHHHHHHhhhhcCCcHHHH---HHHHhhhhccccchh
Q 026156 130 GYVLSKDALVKAKALDESYGLSASAA---AKVAELSNRIGLTDK 170 (242)
Q Consensus 130 Gyvl~~~ai~kA~~~Dekh~~ss~~~---~~v~~~d~k~g~t~k 170 (242)
-+-|+-.|-.|.-+||++.|||.++. .+|.++|+|||++|+
T Consensus 147 ~h~lss~a~a~v~~~d~~iglt~k~~~g~~~vk~vDeky~vs~~ 190 (243)
T PLN03121 147 SHQVSATAAAKVAELSKRIGLTDKIFAGMEAVRSVDEKYHVSEF 190 (243)
T ss_pred hcCccHhhhhhhhhhhhhccchhhhhhhHHHHHhhhhhhhhHHH
Confidence 34466677777777777777777664 466777777777777
No 135
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.82 E-value=0.29 Score=49.43 Aligned_cols=68 Identities=15% Similarity=-0.044 Sum_probs=59.6
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V~~a 78 (242)
..+|||+||+..+...-++....+||-|.++... .|+|..|.+....-.| ++|+--.++|..+.+.+.
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4699999999999999999999999999887654 3999999999999999 688888898888877654
No 136
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.22 E-value=0.25 Score=46.19 Aligned_cols=70 Identities=14% Similarity=0.260 Sum_probs=54.1
Q ss_pred EEEEeCCCCCCCHHHH-H--HHhccCCCceEEEEeecC--C----cCceEEEEecCHHHHHHHH-hcCCCeecCeeEEEE
Q 026156 7 VAEVVGLSPNATEKDI-H--EFFSHCGDPVHVEIIRSG--E----CGGTAYVTFSNAYALETAV-LLSGATIVDQPVCII 76 (242)
Q Consensus 7 tV~VsNLs~~~TE~dL-r--efFs~~G~I~~V~l~~~~--~----~~~~AfV~F~~~~aA~tAl-~Lng~~l~g~~I~V~ 76 (242)
-+||-+|++..-++.+ + ++|+.||+|..|.+.++. . ....+||||+..+.+..++ ..+|..++|+.++..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 4778899887655544 3 689999999999998754 1 2247999999999999994 778888888876654
No 137
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.23 E-value=2 Score=41.99 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=57.7
Q ss_pred CcEEEEeCCCCCCCHHHHHHHh-ccCCCceEEEEeecCCcCc-eEEEEecCHHHHHHH-HhcCCCeecC
Q 026156 5 GYVAEVVGLSPNATEKDIHEFF-SHCGDPVHVEIIRSGECGG-TAYVTFSNAYALETA-VLLSGATIVD 70 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefF-s~~G~I~~V~l~~~~~~~~-~AfV~F~~~~aA~tA-l~Lng~~l~g 70 (242)
.+.|.|--+|...|-.||-.|. +++-.|.+|++++++...+ ...|.|.+..+|.+- ..+||..+..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 4678999999999999999998 4667899999999877665 689999999999999 8999998765
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.08 E-value=0.47 Score=46.40 Aligned_cols=67 Identities=18% Similarity=0.166 Sum_probs=54.4
Q ss_pred EEEEeCCCCCC-CHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEE
Q 026156 7 VAEVVGLSPNA-TEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCII 76 (242)
Q Consensus 7 tV~VsNLs~~~-TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~ 76 (242)
.+.+--+++.. +-.+|..+|..||+|..|.+-.. ..-|.|||....++-.|-...+..|+++.|+|.
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhccccceecCceeEEE
Confidence 33444444443 67889999999999999988533 357999999999999999999999999999996
No 139
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=84.24 E-value=1.2 Score=32.08 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.9
Q ss_pred HHHHHHhccCCCceEEEEe
Q 026156 20 KDIHEFFSHCGDPVHVEII 38 (242)
Q Consensus 20 ~dLrefFs~~G~I~~V~l~ 38 (242)
.+||+|||..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5899999999999766554
No 140
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=82.64 E-value=2.3 Score=42.55 Aligned_cols=65 Identities=15% Similarity=0.311 Sum_probs=51.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhc--cCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcC--CCeecCeeEE
Q 026156 6 YVAEVVGLSPNATEKDIHEFFS--HCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLS--GATIVDQPVC 74 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs--~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Ln--g~~l~g~~I~ 74 (242)
|.|.+.-||..+-+++++-+|. .|=++.+|+.-..+. =||+|++..+|+.| ..|. -.+|-|++|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 5688999999999999999996 599999999876543 49999999999998 3332 2345555554
No 141
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=82.63 E-value=1.3 Score=43.18 Aligned_cols=65 Identities=23% Similarity=0.268 Sum_probs=51.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHH-HhcCCC-eecCeeEEEEe
Q 026156 7 VAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETA-VLLSGA-TIVDQPVCIIR 77 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tA-l~Lng~-~l~g~~I~V~~ 77 (242)
.+|++||+|.++..+|+..|... +| .-.++ ..+++||...+..-+..| ..|+|. ++-|.++.|..
T Consensus 3 klyignL~p~~~psdl~svfg~a-k~-----~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA-KI-----PGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred cccccccCCCCChHHHHHHhccc-cC-----CCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 68999999999999999999654 11 11111 357999999999999999 577775 57888888863
No 142
>PF01296 Galanin: Galanin; InterPro: IPR008174 Galanin is a peptide hormone that controls various biological activities []. Galanin-like immuno-reactivity has been found in the central and peripheral nervous systems of mammals, with high concentrations demonstrated in discrete regions of the central nervous system, including the median eminence, hypothalamus, arcuate nucleus, septum, neuro-intermediate lobe of the pituitary, and the spinal cord. Its localisation within neurosecretory granules suggests that galanin may function as a neurotransmitter, and it has been shown to coexist with a variety of other peptide and amine neurotransmitters within individual neurons []. Although the precise physiological role of galanin is uncertain, it has a number of pharmacological properties: it stimulates food intake, when injected into the third ventricle of rats; it increases levels of plasma growth hormone and prolactin, and decreases dopamine levels in the median eminence []; and infusion into humans results in hyperglycemia and glucose intolerance, and inhibits pancreatic release of insulin, somatostatin and pancreatic peptide. Galanin also modulates smooth muscle contractility within the gastro-intestinal and genito-urinary tracts, all such activities suggesting that the hormone may play an important role in the nervous modulation of endocrine and smooth muscle function []. Galanin is a 29 amino acid peptide processed from a larger precursor protein. Except in human, galanin is C-terminally amidated. Its sequence is highly conserved and the first 14 residues are identical in all currently known sequences.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=78.83 E-value=0.37 Score=29.17 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=22.7
Q ss_pred HhhccceecHHHHHHHHHhhhhcCCc
Q 026156 126 MIAKGYVLSKDALVKAKALDESYGLS 151 (242)
Q Consensus 126 ~LA~Gyvl~~~ai~kA~~~Dekh~~s 151 (242)
+-..||.||..+|.-=+.|-+||||.
T Consensus 4 lnsagyLlGPhaiD~HRSf~DK~Gla 29 (29)
T PF01296_consen 4 LNSAGYLLGPHAIDNHRSFGDKHGLA 29 (29)
T ss_pred ccccceEeccccccCccccccccCCC
Confidence 44679999999999999999999974
No 143
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=74.74 E-value=3.4 Score=29.94 Aligned_cols=59 Identities=19% Similarity=0.194 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHhccCCCc-----eEEEEeecCCcCceEEEEecCHHHHHHHHhcCCCeecCeeEEEEec
Q 026156 15 PNATEKDIHEFFSHCGDP-----VHVEIIRSGECGGTAYVTFSNAYALETAVLLSGATIVDQPVCIIRW 78 (242)
Q Consensus 15 ~~~TE~dLrefFs~~G~I-----~~V~l~~~~~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V~~a 78 (242)
..++..+|-.++...+.| -.|++. ..++||+-....+-.--..|++..+.|++|.|.++
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 467889999999877655 456665 35889998877554444789999999999999864
No 144
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=71.78 E-value=2.9 Score=37.75 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=32.6
Q ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEee
Q 026156 1 MYAGGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIR 39 (242)
Q Consensus 1 M~~~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~ 39 (242)
|.....++|+-|||+.+|++.|.+|-+.||-+..+....
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~ 74 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYND 74 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhheeccc
Confidence 455667899999999999999999999999776665543
No 145
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=70.52 E-value=3.4 Score=41.73 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=53.4
Q ss_pred cEEEEeCCCCCCCHHHHHHHhc-cCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee---cCeeEEEEe
Q 026156 6 YVAEVVGLSPNATEKDIHEFFS-HCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI---VDQPVCIIR 77 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs-~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l---~g~~I~V~~ 77 (242)
+.|||.||---.|..+|+++.. .||.|++..|-. -+.-|||.|...+.|-.- -.|+|... +++.|.+..
T Consensus 445 nvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk---IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 445 NVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK---IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred ceEeeecccccchHHHHHHHHhhccCchHHHHHHH---hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5799999999999999999998 888888873311 124799999988777655 67888876 456677653
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=69.64 E-value=2.4 Score=38.93 Aligned_cols=74 Identities=20% Similarity=0.062 Sum_probs=59.2
Q ss_pred CcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC---cCceEEEEecCHHHHHHHHhcCCC-eecCeeEEEEec
Q 026156 5 GYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE---CGGTAYVTFSNAYALETAVLLSGA-TIVDQPVCIIRW 78 (242)
Q Consensus 5 ~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~---~~~~AfV~F~~~~aA~tAl~Lng~-~l~g~~I~V~~a 78 (242)
..+.|+++++..+.+.+...||...|......+....+ ..+++++.|...+.+..++.+++. .+.++.+.....
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 46899999999999999999999999877776664322 347999999999999999998885 666665555433
No 147
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=68.49 E-value=3.9 Score=39.47 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=53.5
Q ss_pred cEEEEeCCCCC-CCHHHHHHHhccCCCceEEEEeecC-CcCceEEEEecCHHHHHHHHhcCCCeecCeeEEE
Q 026156 6 YVAEVVGLSPN-ATEKDIHEFFSHCGDPVHVEIIRSG-ECGGTAYVTFSNAYALETAVLLSGATIVDQPVCI 75 (242)
Q Consensus 6 ~tV~VsNLs~~-~TE~dLrefFs~~G~I~~V~l~~~~-~~~~~AfV~F~~~~aA~tAl~Lng~~l~g~~I~V 75 (242)
+++||+++.+. ++-.+.-.+|-|.+...-|.+..+. ....+||+.|.+..++.-+|-.+|..+...+++.
T Consensus 53 RtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~ 124 (479)
T KOG4676|consen 53 RTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTK 124 (479)
T ss_pred eeEEEeccCCcceeHHhhhccceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCcccc
Confidence 68999999775 5667777888888776666665442 2335799999999999888888888887777754
No 148
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=65.36 E-value=8.9 Score=30.61 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=32.4
Q ss_pred EEEEeCCCCC---------CCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCH-HHHHHHHhcC
Q 026156 7 VAEVVGLSPN---------ATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNA-YALETAVLLS 64 (242)
Q Consensus 7 tV~VsNLs~~---------~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~-~aA~tAl~Ln 64 (242)
++.|-|++.. .+-++|++.|+.|..++-.-+....+..+++.|.|... .....|+.|.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 6788888654 46789999999888876444444444557999999854 5666665544
No 149
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=54.24 E-value=35 Score=25.85 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=40.2
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc-CC-CceEEEEeecCCcCceEEEEecCHHHHHHH
Q 026156 7 VAEVVGLSPNATEKDIHEFFSH-CG-DPVHVEIIRSGECGGTAYVTFSNAYALETA 60 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~-~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA 60 (242)
..|+=.+++.++..+|++.+.. || +|.+|..+.-...-+-|||++...+.|...
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~v 77 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEI 77 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHH
Confidence 3455567789999999998864 45 788887776554447999999887766654
No 150
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=44.47 E-value=90 Score=22.51 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=40.9
Q ss_pred CCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCeecCeeEEE
Q 026156 16 NATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATIVDQPVCI 75 (242)
Q Consensus 16 ~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l~g~~I~V 75 (242)
.++-+|++.-+..|+- ..|.. +. .--||.|.+..+|+++ ...||..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~---tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR---TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC---CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4678899999988874 44442 21 2369999999999999 688999888877654
No 151
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=40.25 E-value=76 Score=23.59 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCCHHHHHHHhcc-CC-CceEEEEeecCCcCceEEEEecCHHHHHHH
Q 026156 7 VAEVVGLSPNATEKDIHEFFSH-CG-DPVHVEIIRSGECGGTAYVTFSNAYALETA 60 (242)
Q Consensus 7 tV~VsNLs~~~TE~dLrefFs~-~G-~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA 60 (242)
.-|+-.+++.++..+|++.++. || +|.+|..+.-...-+-|||++...+.|...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~v 70 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEI 70 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHH
Confidence 4566678899999999988864 45 778887775554447899999776665543
No 152
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=35.66 E-value=62 Score=26.60 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=33.2
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCC
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGE 42 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~ 42 (242)
....+++.|++..+++.++...|..+|.|....+.....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 224 KSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 446899999999999999999999999997777765433
No 153
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.49 E-value=28 Score=26.66 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=20.3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHh
Q 026156 4 GGYVAEVVGLSPNATEKDIHEFF 26 (242)
Q Consensus 4 ~~~tV~VsNLs~~~TE~dLrefF 26 (242)
+.++|-|+|||....|++|+|..
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 45799999999999999999864
No 154
>smart00071 Galanin Galanin. Galanin [1,2,3] is a neuropeptide that controls various biological activities: it regulates the release growth hormone, inhibits the release of insulin and somatostatin, contracts smooth muscle of the gastrointestinal and genitourinary tract and may be involved in the control of adrenal secretion
Probab=34.65 E-value=7.4 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.523 Sum_probs=24.8
Q ss_pred HHhhccceecHHHHHHHHHhhhhcCCcHH
Q 026156 125 TMIAKGYVLSKDALVKAKALDESYGLSAS 153 (242)
Q Consensus 125 ~~LA~Gyvl~~~ai~kA~~~Dekh~~ss~ 153 (242)
++-.-||.||..+|.--+.|-+|||++.+
T Consensus 15 tlnsagyllgp~aid~hrs~~dk~g~~gK 43 (103)
T smart00071 15 TLNSAGYLLGPHAIDNHRSFHDKHGLTGK 43 (103)
T ss_pred eeccCceeeCccccccccccccCCCcccc
Confidence 35567999999999999999999998763
No 155
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.15 E-value=55 Score=30.58 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=42.7
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecC----------CcCceEEEEecCHHHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSG----------ECGGTAYVTFSNAYALET 59 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~----------~~~~~AfV~F~~~~aA~t 59 (242)
|.+-..||..+++-..+-.-|-.||+|++|.++.+. ...+...+.|-..+.+-.
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 567788999888888888889999999999999654 123588899988876654
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.07 E-value=57 Score=30.59 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=35.8
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCc-eEEEEeecCCcCceEEEEecCHHHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDP-VHVEIIRSGECGGTAYVTFSNAYAL 57 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I-~~V~l~~~~~~~~~AfV~F~~~~aA 57 (242)
.-|+++|||-++.-+||+.-...-|-+ .+|.+ .+..+.||.+|.+..++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw---kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW---KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee---ecCCcceeEecCCccCC
Confidence 359999999999999999887665532 33433 34457899999876543
No 157
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=32.67 E-value=38 Score=31.64 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=46.9
Q ss_pred CCCCC--cEEEEeCCCCC------------CCHHHHHHHhccCCCceEEEEeecC-------C-cC-----c--------
Q 026156 1 MYAGG--YVAEVVGLSPN------------ATEKDIHEFFSHCGDPVHVEIIRSG-------E-CG-----G-------- 45 (242)
Q Consensus 1 M~~~~--~tV~VsNLs~~------------~TE~dLrefFs~~G~I~~V~l~~~~-------~-~~-----~-------- 45 (242)
|-|+. -||++.+||.. .+|+-|+..|..||.|..|.|+-.+ + -+ +
T Consensus 143 mkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlf 222 (445)
T KOG2891|consen 143 MKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLF 222 (445)
T ss_pred cCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchh
Confidence 34444 48999998863 5788999999999999999887431 1 00 1
Q ss_pred -eEEEEecCHHHHHHH-HhcCCCe
Q 026156 46 -TAYVTFSNAYALETA-VLLSGAT 67 (242)
Q Consensus 46 -~AfV~F~~~~aA~tA-l~Lng~~ 67 (242)
-|||.|-.....-+| -.|.|..
T Consensus 223 feayvqfmeykgfa~amdalr~~k 246 (445)
T KOG2891|consen 223 FEAYVQFMEYKGFAQAMDALRGMK 246 (445)
T ss_pred HHHHHHHHHHHhHHHHHHHHhcch
Confidence 267777777777777 4555544
No 158
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=30.16 E-value=51 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=20.6
Q ss_pred EEEEecCHHHHHHHHhc-CCCeecCeeEEEEecC
Q 026156 47 AYVTFSNAYALETAVLL-SGATIVDQPVCIIRWG 79 (242)
Q Consensus 47 AfV~F~~~~aA~tAl~L-ng~~l~g~~I~V~~a~ 79 (242)
|||+|+++.+|..+..+ .... ++.+.+.+++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCC
Confidence 79999999999999542 2222 2445666553
No 159
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.05 E-value=45 Score=25.32 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=22.3
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHhccCC--CceEEEE
Q 026156 3 AGGYVAEVVGLSPNATEKDIHEFFSHCG--DPVHVEI 37 (242)
Q Consensus 3 ~~~~tV~VsNLs~~~TE~dLrefFs~~G--~I~~V~l 37 (242)
++.+.|.+.|||+.+.++.|+ .+-.| .|.+|.+
T Consensus 21 ~G~~~i~~~~Lp~~~d~~Sl~--V~~~g~~~i~~v~~ 55 (104)
T PF13600_consen 21 AGENEIIFEGLPPSLDPDSLR--VSGEGGVTILSVRF 55 (104)
T ss_pred CCceEEEEeCCCcccCCCcEE--EEecCCEEEEEEEE
Confidence 456789999999999888775 34444 3444433
No 160
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.12 E-value=2.5e+02 Score=23.78 Aligned_cols=50 Identities=20% Similarity=0.104 Sum_probs=39.3
Q ss_pred cEEEEeCCCCCCCHHHHHHHhcc---CCCceEEEEeecCCc-------------CceEEEEecCHH
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSH---CGDPVHVEIIRSGEC-------------GGTAYVTFSNAY 55 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~---~G~I~~V~l~~~~~~-------------~~~AfV~F~~~~ 55 (242)
..|++.-++..++|++.++.-+. .++|.+|.+-+.++. ..|-+|.|++-.
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~ 153 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGK 153 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccch
Confidence 58999999999999999999875 478888888775441 127888887644
No 161
>PF11492 Dicistro_VP4: Cricket paralysis virus, VP4; InterPro: IPR024343 This domain represents VP4, a minor capsid protein from dicistroviridae which is processed from the capsid polyprotein. The dicistroviridae is a group of small, RNA-containing viruses that are closely structurally related to the picornaviridae. VP4 is a short, extended polypeptide chain found within the viral capsid, at the interface between the external protein shell and packaged RNA genome [].; PDB: 1B35_D.
Probab=23.53 E-value=40 Score=23.79 Aligned_cols=18 Identities=39% Similarity=0.558 Sum_probs=9.9
Q ss_pred hhhhhhhHhhHHHHHHHH
Q 026156 215 FAKGALWVSGVLERAAKA 232 (242)
Q Consensus 215 ~~~ga~w~~~a~~~~a~~ 232 (242)
+.+...||+++...+||-
T Consensus 36 ~ak~~~wvs~~v~~vAki 53 (56)
T PF11492_consen 36 IAKPTSWVSDAVSDVAKI 53 (56)
T ss_dssp SSSS-TT----HHHHHHH
T ss_pred hhchHHHHHHHHHHHHHH
Confidence 345599999999999874
No 162
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.06 E-value=1.5e+02 Score=22.46 Aligned_cols=47 Identities=17% Similarity=0.100 Sum_probs=33.1
Q ss_pred cEEEEeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEec
Q 026156 6 YVAEVVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFS 52 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~ 52 (242)
.-|||+|++..+.|.=.......+++=.-+-+..+....+|.|-++-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 35999999999999888888877765333333344444568887773
No 163
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=22.24 E-value=72 Score=29.17 Aligned_cols=23 Identities=39% Similarity=0.557 Sum_probs=20.0
Q ss_pred HHHHHHhhccceecHHHHHHHHHh
Q 026156 121 DAVKTMIAKGYVLSKDALVKAKAL 144 (242)
Q Consensus 121 ~iva~~LA~Gyvl~~~ai~kA~~~ 144 (242)
..+|..||+||-| .+|+++||+|
T Consensus 216 aAIaa~LA~G~~l-~~AV~~Ak~f 238 (263)
T COG0351 216 AAIAANLAKGLSL-EEAVKKAKEF 238 (263)
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHH
Confidence 3689999999999 7788889877
No 164
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=21.83 E-value=2.6e+02 Score=22.13 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=32.6
Q ss_pred ccceecHH---HHHHHHHhhhhcCCcHHHHHHHHhhhhccc
Q 026156 129 KGYVLSKD---ALVKAKALDESYGLSASAAAKVAELSNRIG 166 (242)
Q Consensus 129 ~Gyvl~~~---ai~kA~~~Dekh~~ss~~~~~v~~~d~k~g 166 (242)
.|..|.++ .|+-.++|=++||++.....-+..+.+++|
T Consensus 35 egieLT~~HW~VI~~lR~~y~e~~~~P~~R~l~K~~~~~~g 75 (109)
T PRK11508 35 EGISLSPEHWEVVRFVRDFYLEFNTSPAIRMLVKAMANKFG 75 (109)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHhC
Confidence 48889987 788889999999999998888888888776
No 165
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=21.78 E-value=59 Score=20.93 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=10.1
Q ss_pred CCCHHHHHHHhccCCC
Q 026156 16 NATEKDIHEFFSHCGD 31 (242)
Q Consensus 16 ~~TE~dLrefFs~~G~ 31 (242)
.+++++||+.|+..++
T Consensus 20 Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 20 DTDEDQLKEVFNRIKK 35 (36)
T ss_dssp ---HHHHHHHHHCS--
T ss_pred cCCHHHHHHHHHHhcc
Confidence 6899999999987654
No 166
>PF14893 PNMA: PNMA
Probab=21.17 E-value=74 Score=30.04 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=33.0
Q ss_pred cEEEEeCCCCCCCHHHHHHHh----ccCCCceEE-EEeecCCcCceEEEEecCH
Q 026156 6 YVAEVVGLSPNATEKDIHEFF----SHCGDPVHV-EIIRSGECGGTAYVTFSNA 54 (242)
Q Consensus 6 ~tV~VsNLs~~~TE~dLrefF----s~~G~I~~V-~l~~~~~~~~~AfV~F~~~ 54 (242)
+.+-|.+||.+|++.+|++-. ...|.-.=+ ++.+..+..+.|+|+|...
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 568899999999999999875 445543222 1222233457888888744
No 167
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=20.81 E-value=77 Score=33.71 Aligned_cols=68 Identities=19% Similarity=0.156 Sum_probs=53.0
Q ss_pred EeCCCCCCCHHHHHHHhccCCCceEEEEeecCCcCceEEEEecCHHHHHHH-HhcCCCee--cCeeEEEEecCC
Q 026156 10 VVGLSPNATEKDIHEFFSHCGDPVHVEIIRSGECGGTAYVTFSNAYALETA-VLLSGATI--VDQPVCIIRWGE 80 (242)
Q Consensus 10 VsNLs~~~TE~dLrefFs~~G~I~~V~l~~~~~~~~~AfV~F~~~~aA~tA-l~Lng~~l--~g~~I~V~~a~~ 80 (242)
+.|..-+.+-.-|.-+|+.||.+.+.+.+++. .-|.|.|..-+.+..| -.|.|.++ .|.+.+|..+..
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33444467788899999999999999998764 3689999999988888 47888775 577788876543
No 168
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.74 E-value=1.5e+02 Score=19.67 Aligned_cols=24 Identities=8% Similarity=0.196 Sum_probs=20.8
Q ss_pred HHHHHHHhhccceecHHHHHHHHH
Q 026156 120 QDAVKTMIAKGYVLSKDALVKAKA 143 (242)
Q Consensus 120 ~~iva~~LA~Gyvl~~~ai~kA~~ 143 (242)
...+..|..+||-++++.+++++.
T Consensus 22 ~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 22 KPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHHHHHHcCcccCHHHHHHHHH
Confidence 357999999999999999988874
Done!