BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026158
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 44/50 (88%)
Query: 189 CGSCGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSTK 238
CG+CG SY + +FWI CD+CE W+HGKCVKITPA+AE+IKQYKCPSCS K
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCST 237
C Y+ ++F+IGCD C+ WYHG+CV I ++AE I +Y CP C +
Sbjct: 13 CKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCST 237
C Y+ ++F+IGCD C+ WYHG+CV I ++AE I +Y CP C +
Sbjct: 13 CKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 33/48 (68%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSTKK 239
C Y+ ++F+IGCD C+ WYHG+CV I ++AE I +Y CP C + +
Sbjct: 13 CKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCST 237
C + ++F+IGCD C+ WYHG+CV I ++AE I +Y CP C +
Sbjct: 13 CKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCST 237
C Y+ +F I CD+C+ W+HG CV + KA +I Y CP+C
Sbjct: 10 CRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEV 55
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCST 237
C Y+ +F I CDIC+ W+HG CV + A +I Y CP+C+
Sbjct: 42 CRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 196 YNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSC 235
YN F I C +C+ W+HG CV I A +I Y CP C
Sbjct: 21 YNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDC 60
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSTKKAR 241
C Y+ +F I CD C+ W+HG CV + +A +I Y CP+C +
Sbjct: 15 CRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 200 QFWIGCDICERWYHGKCVKITPAKA----ENIKQYKCPSCS 236
+F I CD CE W+HG CV I+ A+ N + Y CP+C+
Sbjct: 28 RFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 180 DDAENDETFCGSCGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSTK 238
D+ N C C + + IGCD C+ WYH CV I A E + Q+ CP C+ K
Sbjct: 12 DEWGNQIWICPGCNKPDDGSPM-IGCDDCDDWYHWPCVGIMAAPPEEM-QWFCPKCANK 68
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 202 WIGCDICERWYHGKCVKITPAKAENIKQYKCPSC 235
WIGCD C+ WYH C + + +++ CP C
Sbjct: 58 WIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKC 91
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 202 WIGCDI-CERWYHGKCVKITPAKAENIKQYKCPSCS 236
W+ CD C+ W+H CV ++P AEN + Y C +C+
Sbjct: 18 WVQCDGGCDEWFHQVCVGVSPEMAEN-EDYICINCA 52
>pdb|2R5J|A Chain A, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|B Chain B, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|C Chain C, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|D Chain D, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|E Chain E, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|F Chain F, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|G Chain G, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|H Chain H, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|I Chain I, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|J Chain J, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|K Chain K, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|L Chain L, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|M Chain M, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|N Chain N, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
pdb|2R5J|O Chain O, Pentamer Structure Of Major Capsid Protein L1 Of Human
Papilloma Virus Type 35
Length = 423
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 20/82 (24%)
Query: 163 GQARSKHELLEESLGEVDDAENDETFCGSCGG--------SYNSAQF-WIGC--DICERW 211
G S H LL + +DD EN + G+ G Y Q IGC I E W
Sbjct: 95 GVGISGHPLLNK----LDDTENSNKYVGNSGTDNRECISMDYKQTQLCLIGCRPPIGEHW 150
Query: 212 YHGKCVKITPAKAENIKQYKCP 233
G TP+ A +K +CP
Sbjct: 151 GKG-----TPSNANQVKAGECP 167
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 6 SSPRTVEEIF---------KDFKARRSALVRALTYDVDQFYSQCDPEKENLCLYGHPNES 56
+SPRT E+ + AR + V Y Q + P+ + + +P S
Sbjct: 354 ASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHS 413
Query: 57 WEVTMPADEVPPEI 70
+ T PADE+PP +
Sbjct: 414 PDFTGPADELPPYV 427
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Query: 6 SSPRTVEEIF---------KDFKARRSALVRALTYDVDQFYSQCDPEKENLCLYGHPNES 56
+SPRT E+ + AR + V Y Q + P+ + + +P S
Sbjct: 354 ASPRTAYEVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIYPPHS 413
Query: 57 WEVTMPADEVPPEI 70
+ T PADE+PP +
Sbjct: 414 PDFTGPADELPPYV 427
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger
pdb|2PUY|B Chain B, Crystal Structure Of The Bhc80 Phd Finger
Length = 60
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 186 ETFCGSCGGSYNSAQFWIGCDICERWYHGKCVKITPAKAENIKQYKCPSCSTK 238
E FC C S Q + CD C R YH C+ P K + CP C +
Sbjct: 5 EDFCSVC---RKSGQLLM-CDTCSRVYHLDCLD-PPLKTIPKGMWICPRCQDQ 52
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 166 RSKHELLEESLGEVDDAENDETFCGSCGGS-YNSAQFWIGCDICERWYHGKCVKITPA 222
RSKH+ + G TFC CG Y + CD C+ H +CV P+
Sbjct: 15 RSKHKFKIHTYGS-------PTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPS 65
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 192 CGGSYNSAQFWIGCDICERWYHGKCVKITPAKA 224
CG + + + CD C W+H +C+ I A A
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADA 53
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 189 CGSCGGSYNSAQFWIGCDI-CERWYHGKCVKIT 220
CG+C N Q I C+ C++W+H +C +T
Sbjct: 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMT 38
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 28.1 bits (61), Expect = 5.1, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 189 CGSCGGSYNSAQFWIGCDI-CERWYHGKCVKITPA-----KAENIKQYKCPSC 235
CG C N Q I C+ C++W+H C +T AE + C +C
Sbjct: 8 CGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 60
>pdb|1TBN|A Chain A, Nmr Structure Of A Protein Kinase C-G Phorbol-Binding
Domain, Minimized Average Structure
pdb|1TBO|A Chain A, Nmr Structure Of A Protein Kinase C-g Phorbol-binding
Domain, 30 Structures
Length = 82
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 187 TFCGSCGGS-YNSAQFWIGCDICERWYHGKCVKITPA 222
TFC CG Y + C CE H +CV+ P+
Sbjct: 22 TFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPS 58
>pdb|1HX1|B Chain B, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
pdb|3FZF|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|B Chain B, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|B Chain B, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|B Chain B, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 114
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 13 EIFKDFKARRSALVRALTYDVDQFYSQCDPEKENLC 48
E FKD + +R LV+ V F ++CD ++N+C
Sbjct: 79 ENFKDSRLKRKGLVKK----VQAFLAECDTVEQNIC 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,987,002
Number of Sequences: 62578
Number of extensions: 339097
Number of successful extensions: 725
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 49
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)