Query 026159
Match_columns 242
No_of_seqs 95 out of 112
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 06:56:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_B SEC61gamma, protein tra 23.6 43 0.0015 24.0 2.2 26 111-136 31-56 (68)
2 3mp7_B Preprotein translocase 18.1 61 0.0021 22.6 2.0 26 111-136 28-53 (61)
3 3i9v_6 NADH-quinone oxidoreduc 17.7 74 0.0025 26.8 2.8 23 143-165 132-154 (181)
4 3myr_A Hydrogenase (NIFE) smal 14.2 1E+02 0.0034 27.4 2.8 25 142-166 138-162 (269)
5 1h2a_S Hydrogenase; SO ligand, 10.9 1.4E+02 0.0049 27.0 2.8 21 145-165 194-214 (317)
6 1yqw_A Periplasmic [NIFE] hydr 10.7 1.3E+02 0.0046 26.4 2.5 21 145-165 141-161 (264)
7 1wui_S Periplasmic [NIFE] hydr 10.4 1.4E+02 0.0048 26.2 2.5 21 145-165 144-164 (267)
8 3rgw_S Membrane-bound hydrogen 10.4 1.4E+02 0.0047 27.5 2.5 22 145-166 143-164 (339)
9 1yq9_A Periplasmic [NIFE] hydr 10.0 1.5E+02 0.005 26.1 2.5 21 145-165 142-162 (264)
10 3uqy_S Hydrogenase-1 small cha 9.9 1.4E+02 0.0049 27.2 2.5 23 143-165 139-163 (335)
No 1
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=23.55 E-value=43 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.0
Q ss_pred chhhHHHHHhccchhhHHHHHHHhhc
Q 026159 111 TDKMQIALAGGLGHGVAHAVFFCLSL 136 (242)
Q Consensus 111 ~~~~~la~v~GlGfG~ms~~f~~~n~ 136 (242)
++..++|.++|+|+.+|-.+=+.+-+
T Consensus 31 ~Ef~~iak~~~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 31 KEFQKIAMATAIGFAIMGFIGFFVKL 56 (68)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999887666543
No 2
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=18.09 E-value=61 Score=22.59 Aligned_cols=26 Identities=15% Similarity=0.111 Sum_probs=20.8
Q ss_pred chhhHHHHHhccchhhHHHHHHHhhc
Q 026159 111 TDKMQIALAGGLGHGVAHAVFFCLSL 136 (242)
Q Consensus 111 ~~~~~la~v~GlGfG~ms~~f~~~n~ 136 (242)
++..++|-+.|+|+.+|-.+=+.+.+
T Consensus 28 ~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 28 ATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999877666554
No 3
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=17.75 E-value=74 Score=26.76 Aligned_cols=23 Identities=43% Similarity=0.779 Sum_probs=18.2
Q ss_pred CcccccCCCCCchHHHHHHHHHH
Q 026159 143 PATFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 143 pGt~~~~~c~~~~~fl~SA~~tl 165 (242)
|=.++++|||+.|-=++.++..+
T Consensus 132 pVDv~IPGCPP~Pe~il~~l~~l 154 (181)
T 3i9v_6 132 PVDVYVPGCPPRPEALIYAVMQL 154 (181)
T ss_dssp CCSEEECCSSCCHHHHHHHHHHH
T ss_pred CccEEeeCCCCCHHHHHHHHHHH
Confidence 54579999999998888877554
No 4
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=14.21 E-value=1e+02 Score=27.35 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=20.5
Q ss_pred cCcccccCCCCCchHHHHHHHHHHH
Q 026159 142 GPATFYVDRCPQMPFFLISAIIALA 166 (242)
Q Consensus 142 GpGt~~~~~c~~~~~fl~SA~~tl~ 166 (242)
||=.++++|||+.|--++.++..++
T Consensus 138 ~~vdi~IPGCPp~Pe~i~~~l~~ll 162 (269)
T 3myr_A 138 DKPVINVPGCPPIPMVITGVIAHYL 162 (269)
T ss_dssp SSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHH
Confidence 4667899999999988888886653
No 5
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=10.92 E-value=1.4e+02 Score=26.95 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.5
Q ss_pred ccccCCCCCchHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl 165 (242)
.+++||||+.|--++.++..+
T Consensus 194 di~IPGCPP~Pe~i~~~l~~l 214 (317)
T 1h2a_S 194 AINIAGCPPNPYNLVGTIVYY 214 (317)
T ss_dssp CBCCCCSSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999998777777554
No 6
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=10.69 E-value=1.3e+02 Score=26.37 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=17.1
Q ss_pred ccccCCCCCchHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl 165 (242)
.++++|||+.|--++.++..+
T Consensus 141 Vi~IPGCPP~Pe~i~~~l~~l 161 (264)
T 1yqw_A 141 TINIPGCPPNPINFVGAVVHV 161 (264)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEeeCCCCCHHHHHHHHHHH
Confidence 489999999998777777554
No 7
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=10.44 E-value=1.4e+02 Score=26.24 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.5
Q ss_pred ccccCCCCCchHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl 165 (242)
.++++|||+.|--++.++..+
T Consensus 144 di~IPGCPP~Pe~i~~~l~~l 164 (267)
T 1wui_S 144 AINIAGCPPNPYNLVGTIVYY 164 (267)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 689999999998888777654
No 8
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=10.35 E-value=1.4e+02 Score=27.48 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.1
Q ss_pred ccccCCCCCchHHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIALA 166 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl~ 166 (242)
.++++|||+.|--++.++..++
T Consensus 143 di~IPGCPP~Pe~i~~~l~~ll 164 (339)
T 3rgw_S 143 IIKVPGCPPIAEVMTGVITYML 164 (339)
T ss_dssp EEEECSSSCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 5799999999988888876544
No 9
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=9.99 E-value=1.5e+02 Score=26.07 Aligned_cols=21 Identities=19% Similarity=0.640 Sum_probs=17.3
Q ss_pred ccccCCCCCchHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl 165 (242)
.++++|||+.|--++.++..+
T Consensus 142 di~IPGCPP~Pe~i~~~l~~l 162 (264)
T 1yq9_A 142 AINIAGCPPNPMNFVGTVVHL 162 (264)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 789999999998777777554
No 10
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=9.95 E-value=1.4e+02 Score=27.25 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=18.6
Q ss_pred Cc--ccccCCCCCchHHHHHHHHHH
Q 026159 143 PA--TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 143 pG--t~~~~~c~~~~~fl~SA~~tl 165 (242)
|+ .++++|||+.|--++.++..+
T Consensus 139 ~~~~di~IPGCPP~Pe~i~~~l~~l 163 (335)
T 3uqy_S 139 TDKPIIKVPGCPPIPDVMSAIITYM 163 (335)
T ss_dssp CSSCEEEECSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 55 489999999998888877554
Done!