Query 026159
Match_columns 242
No_of_seqs 95 out of 112
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 06:56:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 23.5 13 0.00092 24.3 1.0 26 111-136 21-46 (56)
2 d2fug61 e.19.1.2 (6:15-175) NA 20.2 27 0.002 27.0 2.6 24 141-164 116-139 (161)
3 d1yq9a1 e.19.1.1 (A:4-264) Nic 10.0 69 0.0051 25.9 2.5 21 145-165 139-159 (261)
4 d3cx5i1 f.23.14.1 (I:4-58) Sub 8.7 1.1E+02 0.0083 19.3 2.7 19 23-41 6-24 (55)
5 d1wuis1 e.19.1.1 (S:1-267) Nic 7.9 95 0.0069 25.1 2.5 23 142-164 141-163 (267)
6 d1frfs_ e.19.1.1 (S:) Nickel-i 7.2 1.1E+02 0.0078 24.7 2.5 20 146-165 139-158 (261)
7 d2gfoa1 d.3.1.9 (A:762-1109) U 6.3 1.4E+02 0.0099 22.7 2.6 27 141-168 11-37 (348)
8 d2bo9b2 d.17.1.5 (B:99-217) La 6.3 79 0.0057 23.2 1.0 31 210-242 27-57 (119)
9 d1ppjw_ f.23.14.1 (W:) Subunit 6.3 1.5E+02 0.011 19.1 2.4 23 20-42 9-31 (62)
10 d1xrda1 f.3.1.1 (A:1-52) Light 5.8 2.2E+02 0.016 17.8 2.9 20 27-47 8-27 (52)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=23.54 E-value=13 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=20.5
Q ss_pred chhhHHHHHhccchhhHHHHHHHhhc
Q 026159 111 TDKMQIALAGGLGHGVAHAVFFCLSL 136 (242)
Q Consensus 111 ~~~~~la~v~GlGfG~ms~~f~~~n~ 136 (242)
.+..++|.++|.|+-+|-.+=+.+-+
T Consensus 21 ~Ef~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 21 DEYLAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999877665543
No 2
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=20.24 E-value=27 Score=27.03 Aligned_cols=24 Identities=38% Similarity=0.647 Sum_probs=18.9
Q ss_pred ccCcccccCCCCCchHHHHHHHHH
Q 026159 141 FGPATFYVDRCPQMPFFLISAIIA 164 (242)
Q Consensus 141 ~GpGt~~~~~c~~~~~fl~SA~~t 164 (242)
.=|=.++++|||+.|-=++.++..
T Consensus 116 ~iPVDvyIPGCPPrPeail~gl~~ 139 (161)
T d2fug61 116 VVPVDVYVPGCPPRPEALIYAVMQ 139 (161)
T ss_dssp TSCCSEEECCSSCCHHHHHHHHHH
T ss_pred cCcCceeCCCCCcCHHHHHHHHHH
Confidence 337779999999999777777754
No 3
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=10.01 E-value=69 Score=25.91 Aligned_cols=21 Identities=19% Similarity=0.640 Sum_probs=17.1
Q ss_pred ccccCCCCCchHHHHHHHHHH
Q 026159 145 TFYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 145 t~~~~~c~~~~~fl~SA~~tl 165 (242)
.+.++|||..|--+..++.++
T Consensus 139 ~i~IpGCPp~p~~i~~~l~~l 159 (261)
T d1yq9a1 139 AINIAGCPPNPMNFVGTVVHL 159 (261)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred eEEeCCCCCCHHHHHHHHHHH
Confidence 578999999998887777654
No 4
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.72 E-value=1.1e+02 Score=19.30 Aligned_cols=19 Identities=5% Similarity=0.350 Sum_probs=9.6
Q ss_pred HhhcCCchhHHHHHHHHHH
Q 026159 23 AVISKKPFLILTVLSSTLL 41 (242)
Q Consensus 23 ~tIa~~P~lIIili~gaFf 41 (242)
....|++..+...++|||+
T Consensus 6 ~lfrRnSv~~~tI~~gAf~ 24 (55)
T d3cx5i1 6 TFFKRNAVFVGTIFAGAFV 24 (55)
T ss_dssp HHHTTSCCCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3444555555555555554
No 5
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=7.91 E-value=95 Score=25.11 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=17.0
Q ss_pred cCcccccCCCCCchHHHHHHHHH
Q 026159 142 GPATFYVDRCPQMPFFLISAIIA 164 (242)
Q Consensus 142 GpGt~~~~~c~~~~~fl~SA~~t 164 (242)
++=.++++|||..|--+..++..
T Consensus 141 ~~vdi~IpGCPp~p~~i~~~l~~ 163 (267)
T d1wuis1 141 GVKAINIAGCPPNPYNLVGTIVY 163 (267)
T ss_dssp TCCCEEECSSSCCHHHHHHHHHH
T ss_pred CCCeEEeCCCCCCHHHHHHHHHH
Confidence 34468999999999777666643
No 6
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=7.23 E-value=1.1e+02 Score=24.73 Aligned_cols=20 Identities=20% Similarity=0.639 Sum_probs=15.9
Q ss_pred cccCCCCCchHHHHHHHHHH
Q 026159 146 FYVDRCPQMPFFLISAIIAL 165 (242)
Q Consensus 146 ~~~~~c~~~~~fl~SA~~tl 165 (242)
+.++|||..|--+..++..+
T Consensus 139 inIpGCPp~p~~i~~~l~~l 158 (261)
T d1frfs_ 139 INIPGCPPNPINFVGAVVHV 158 (261)
T ss_dssp EEECSSSCCHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHH
Confidence 57999999998777777544
No 7
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.32 E-value=1.4e+02 Score=22.74 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=20.8
Q ss_pred ccCcccccCCCCCchHHHHHHHHHHHHH
Q 026159 141 FGPATFYVDRCPQMPFFLISAIIALAFV 168 (242)
Q Consensus 141 ~GpGt~~~~~c~~~~~fl~SA~~tl~~~ 168 (242)
.|||-+|+.- .....|+.|.+|++..+
T Consensus 11 ~~~g~vGL~N-~GNtCYlNSvLQ~L~~i 37 (348)
T d2gfoa1 11 SGPALTGLRN-LGNTCYMNSILQCLCNA 37 (348)
T ss_dssp SSTTCCEECC-SSSCHHHHHHHHHHHTC
T ss_pred CCCCeECCcc-CCchhHHHHHHHHHHcC
Confidence 3899999985 33358999999988663
No 8
>d2bo9b2 d.17.1.5 (B:99-217) Latexin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.30 E-value=79 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=18.9
Q ss_pred CCCceehHHHHHHHHHHHHHHhhhhheecccCC
Q 026159 210 SGGCVVGIPLLYILASLILLHCGKMVWRRLTAS 242 (242)
Q Consensus 210 ~~gc~~s~~~~~~~~~~~~~~~~~~~w~~~~~~ 242 (242)
+.|.+-.-- =-+=-++.+-|+++.||+.||.
T Consensus 27 s~G~i~p~m--~P~w~LA~vgssyvmW~~sTe~ 57 (119)
T d2bo9b2 27 NFGNVSPEM--TLVLHLAWVACGYIIWQNSTED 57 (119)
T ss_dssp TTSCCCHHH--HHHHHHHHHHHHHHHHHHCCTT
T ss_pred ccCCcCchh--HHHHHHHHhcceeeeecccchh
Confidence 345555442 1123345667888999999874
No 9
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.26 E-value=1.5e+02 Score=19.14 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=13.0
Q ss_pred HhHHhhcCCchhHHHHHHHHHHH
Q 026159 20 LFVAVISKKPFLILTVLSSTLLW 42 (242)
Q Consensus 20 lF~~tIa~~P~lIIili~gaFfW 42 (242)
+|=....|++..+...++|||++
T Consensus 9 lYn~lfrRnStf~~tI~~gAf~f 31 (62)
T d1ppjw_ 9 LYSLLFRRTSTFALTIVVGALFF 31 (62)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445556666666666666544
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.83 E-value=2.2e+02 Score=17.80 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 026159 27 KKPFLILTVLSSTLLWLISLI 47 (242)
Q Consensus 27 ~~P~lIIili~gaFfWLvSLL 47 (242)
=||.|+.+.+.. |.-.+.++
T Consensus 8 fDPRr~lva~~~-fL~~LAl~ 27 (52)
T d1xrda1 8 FDPRQALVGLAT-FLFVLALL 27 (52)
T ss_dssp SSHHHHHHHHHH-HHHHHHHH
T ss_pred ecHHHHHHHHHH-HHHHHHHH
Confidence 389998887654 44444443
Done!