BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026161
(242 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WH7|A Chain A, Solution Structure Of Homeobox Domain Of Arabidopsis
Thaliana Hypothetical Protein F22k18.140
Length = 80
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 51/58 (87%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHT 237
KRFRTKFT EQK++ML AE+LGWRIQKHD+ V+QFC +TGV+R VLK+WMHNNK++
Sbjct: 18 KRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNS 75
>pdb|1WH5|A Chain A, Solution Structure Of Homeobox Domain Of
Arabidopsisthaliana Zinc Finger Homeobox Family Protein
Length = 80
Score = 97.1 bits (240), Expect = 9e-21, Method: Composition-based stats.
Identities = 42/59 (71%), Positives = 52/59 (88%)
Query: 179 RKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNKHT 237
RKR RTKFT EQK+RML LAE++GWRIQ+ D+EV+Q+FC +TGV R VLKVW+HNNKH+
Sbjct: 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHS 75
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 173 GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKH-DEEVVQQFCNDTGVKRHVLKVWM 231
G SG S KR RT F Q M K + I + D + ++Q TG+ + VL+VW
Sbjct: 1 GSSGSSGKRMRTSFKHHQLRTM-----KSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWF 55
Query: 232 HN 233
N
Sbjct: 56 QN 57
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 183 RTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVK 223
R KF EQK+ + E L I++ DEE+ ++F NDT V+
Sbjct: 240 RYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRF-NDTFVQ 279
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 180 KRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMHNNK 235
KR RT TPEQ LE+ + +++ ++ G+K+ V++VW N +
Sbjct: 18 KRLRTTITPEQ----LEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 69
>pdb|1XG2|B Chain B, Crystal Structure Of The Complex Between Pectin
Methylesterase And Its Inhibitor Protein
Length = 153
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 39 TAEAAHPGRKARYRECLKNHAVGIGGHALDGCGEFMAAGDEGTLDGLKCAA 89
T +A P K RY C +N+A I +L +F+ +GD +L+ AA
Sbjct: 60 TNQATDPKLKGRYETCSENYADAI--DSLGQAKQFLTSGDYNSLNIYASAA 108
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 165 DQEDASNL----GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDT 220
+QE NL GG +++ RT FTP+ + + EK + E ++ D
Sbjct: 75 NQEGQQNLXEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEXAKELNYD- 133
Query: 221 GVKRHVLKVWMHNNKHTL 238
R V++VW N + TL
Sbjct: 134 ---REVVRVWFSNRRQTL 148
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 27.3 bits (59), Expect = 8.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 173 GGSGGSRKRFRTKFTPEQKDRMLELAEKLGWRIQKHDEEVVQQFCNDTGVKRHVLKVWMH 232
G SG S KR RT+ T +Q R+L + EE +++ + +G+ + V+K W
Sbjct: 1 GSSGSSGKRPRTRITDDQL-RVLRQYFDIN---NSPSEEQIKEMADKSGLPQKVIKHWFR 56
Query: 233 N 233
N
Sbjct: 57 N 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,345,486
Number of Sequences: 62578
Number of extensions: 295483
Number of successful extensions: 599
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 12
length of query: 242
length of database: 14,973,337
effective HSP length: 96
effective length of query: 146
effective length of database: 8,965,849
effective search space: 1309013954
effective search space used: 1309013954
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)